AlfalfaGEDB | MS.gene35004

M. sativa cultivar XinJiangDaYe / MS.gene35004

KEGG: K11664
GO: GO:0005575 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071824 GO:0071840 GO:0080090 GO:0110165 GO:1903506 GO:2000112 GO:2001141
PFAM: PF05764.16 PF08265.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35004.t1	RHN42290.1	98.9	363	4	0	1	363	1	363	4.40E-127	464.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35004.t1	F4IP06	58.1	360	146	2	9	363	4	363	1.7e-71	271.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35004.t1	A0A396GMM6	98.9	363	4	0	1	363	1	363	3.2e-127	464.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene35004	0.836355	9.82E-57	-1.69E-46
MS.gene049159	MS.gene35004	0.840652	7.64E-58	-1.69E-46
MS.gene049341	MS.gene35004	0.824472	7.92E-54	-1.69E-46
MS.gene049808	MS.gene35004	0.832059	1.17E-55	-1.69E-46
MS.gene049850	MS.gene35004	0.806777	6.98E-50	-1.69E-46
MS.gene050237	MS.gene35004	0.814486	1.50E-51	-1.69E-46
MS.gene050384	MS.gene35004	0.839229	1.80E-57	-1.69E-46
MS.gene050386	MS.gene35004	0.836458	9.25E-57	-1.69E-46
MS.gene050689	MS.gene35004	0.836235	1.05E-56	-1.69E-46
MS.gene050807	MS.gene35004	0.81565	8.29E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35004.t1	AT2G36740	59.710	345	130	3	14	351	9	351	1.77e-129	375
MS.gene35004.t1	AT2G36740	62.126	301	105	3	10	303	5	303	2.01e-116	341

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Find 64 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATACATCCACATGAT+CGG	0.556585	4.4:+18412639	MS.gene35004:CDS
AAAATTGATGATAATGATGA+CGG	0.559093	4.4:+18408884	MS.gene35004:CDS
AAACAACAAGAACAACAACC+AGG	0.612812	4.4:+18408919	MS.gene35004:CDS
AAACCAGTAATAACGCAAAC+AGG	0.498211	4.4:-18411427	None:intergenic
AAGAAAGGCTCTTACTTGGC+AGG	0.501328	4.4:-18411451	None:intergenic
AAGAAGCGATTGGTATATCC+TGG	0.422746	4.4:+18408797	MS.gene35004:CDS
AATTATGAACTTGAGGAATT+TGG	0.176156	4.4:+18409852	MS.gene35004:CDS
AATTCTACGAAACCGAGCCA+AGG	0.655235	4.4:-18412663	None:intergenic
ACAATGGAGGAAAAGAATTC+AGG	0.384881	4.4:+18408424	None:intergenic
ACATCCACATGATCGGTCCT+TGG	0.525200	4.4:+18412646	MS.gene35004:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGAAGTAGTTCAGC+CGG	+	chr4.4:18411536-18411555	MS.gene35004:intron	30.0%
AAGTTTACTTGCAATCTAGA+AGG	-	chr4.4:18411699-18411718	None:intergenic	30.0%
AATTCAATAACATCATGGTG+GGG	-	chr4.4:18411927-18411946	None:intergenic	30.0%
ACATAGTTGCAAATCTTACT+AGG	-	chr4.4:18410906-18410925	None:intergenic	30.0%
ACTACATATCACAAAATGGT+TGG	+	chr4.4:18409953-18409972	MS.gene35004:intron	30.0%
ATAGACAAAGGGAAATATTC+CGG	-	chr4.4:18411558-18411577	None:intergenic	30.0%
ATAGTAAACAATGAGTAGGA+AGG	+	chr4.4:18410525-18410544	MS.gene35004:intron	30.0%
ATTGTTGGATAGCTAATGAT+GGG	+	chr4.4:18412124-18412143	MS.gene35004:intron	30.0%
CAAAGAAATTGTTTCGTCAT+TGG	+	chr4.4:18410232-18410251	MS.gene35004:intron	30.0%
CAATGACGAAACAATTTCTT+TGG	-	chr4.4:18410234-18410253	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	18408427	18412715	18408427	ID=MS.gene35004
chr4.4	mRNA	18408427	18412715	18408427	ID=MS.gene35004.t1;Parent=MS.gene35004
chr4.4	exon	18408427	18408651	18408427	ID=MS.gene35004.t1.exon1;Parent=MS.gene35004.t1
chr4.4	CDS	18408427	18408651	18408427	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18408743	18409048	18408743	ID=MS.gene35004.t1.exon2;Parent=MS.gene35004.t1
chr4.4	CDS	18408743	18409048	18408743	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18409669	18409741	18409669	ID=MS.gene35004.t1.exon3;Parent=MS.gene35004.t1
chr4.4	CDS	18409669	18409741	18409669	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18409851	18409970	18409851	ID=MS.gene35004.t1.exon4;Parent=MS.gene35004.t1
chr4.4	CDS	18409851	18409970	18409851	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18410055	18410123	18410055	ID=MS.gene35004.t1.exon5;Parent=MS.gene35004.t1
chr4.4	CDS	18410055	18410123	18410055	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18411416	18411458	18411416	ID=MS.gene35004.t1.exon6;Parent=MS.gene35004.t1
chr4.4	CDS	18411416	18411458	18411416	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18411624	18411689	18411624	ID=MS.gene35004.t1.exon7;Parent=MS.gene35004.t1
chr4.4	CDS	18411624	18411689	18411624	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1
chr4.4	exon	18412526	18412715	18412526	ID=MS.gene35004.t1.exon8;Parent=MS.gene35004.t1
chr4.4	CDS	18412526	18412715	18412526	ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1

Gene Sequence

>MS.gene35004

ATGGAGGAAAAGAATTCAGGCGAAGAAGAGAGATCGAATCTTCTACTACTGGATCGTGCATCTCGAGCGACAAGAGGTAAACGTCTTTCGAAGCTTCTCGACGACGAAGTTCAACAAGATGAATTGTTCTGGGGTCAGGATGCTCTCAAAGAAGAAGACGAAGACGATAACTACCAAGAAGAAGCCGAAATCGCCGACGAATTCGACTCCGATTTCGATCAAGACGTAACTCTCTCTCCAAAACTCATTCATACCGATTAATTAATTAATTAATTCAATTCAATTCAATTAAACTAATTCTTCTTGATTTTCTCAGGAGCCTGAACCCGATGAAGAACAGCCACAAAACGATGATGAAAGAATGAATAAAAAGAAGCGATTGGTATATCCTGGGAAGGCGACATTGGCTAAAAAGAAGAAAAAGAAGAAAATCTTATCTAATTTGGATGATCCTCCCAAAATTGATGATAATGATGACGGAGATGATGATAAAAACAACAAGAACAACAACCAGGACGATGATGCCAAGGAGGTAATGATTAGGAAGTCTACCAGAACTTCCGTCATTGTTCGCCAAGCTGAAAGAGAAGCCATTCGCGAAGCTCTCAAAGCAACCTACAAGGTTATCTCCAATATCTTTTTCTGTGATTCATTAGGGTTTCTTTTCAATTCTTCATGTTATATCAGTTTTTCGATTATATATTTGTTTGAATTAGTGTATTTGTGCTCATCTAGTGGGATATACACCTGTGAGATTATTTGTGAGAGCTTATGTAAATAACTTATGACATATCCATAAGCTGTTTTTCAAGATAGCTTATGCTTCTGTTTGGATAAACAACTTAATTTGCACCTTATCACAACAATAGATAAAATGAAGTGAAACTGCTTTTGTATAAGCTATAAGCTGTTTTCACAAGTTACCCCAGAAAGATTATTGAAATAAGCTTATAACAGCTTATGGACATGGTATAAGTTCTTCTAAACAATATCCCAGGTGCTTATGCTAGTAGATAAGCTAAAATAAGCCAATCTTAACAGAATCTATGTAAATGGATTATATCTTATATATGAAAACAGTTGTCATTATTTTTAATCTTTTGTTATAGAAATAGACTATACATAAGCACCTATATGATAAGCATTTAAGTTAGAAGCACTGGATTAAGTTGTTTACTCAAGTTCCAAACAACACCTGATTATGGTCTGAAAATGTTTTTTTTCTTTTTTTTTTTGGCTCAGCCAGTAATAAGGAAGAAAGGCGAGGAGAAGAAAATGTCACAAGAGGAGATGCTTTTAGAAGCTGCTCAAACAGGTCAATATTAGAATACACTTGGCATCTACTTGTTGATTTCTTTGCCTGCTTGTTTGTTTTAGTTTTCTAAAGATCCTTTGATGTTTCAATTATGCTTTTGGCTCTGCAGAAATTATGAACTTGAGGAATTTGGAGCGAGTTTTAGCTAGAGAGGAAGAAGTTAAGAGAAGAGCTATTGTGCATAAAACTGTCTTTAATGGTCCACAGATACACTACATATCACAAAATGGTTGGATGCTGCATTCCATGTGCATTTAGTTTGGTTGTATTGGTTCTTGCCATTTTACATATAGCAATCTGTTTATTTTTTCAGGTTGTTCGTATTTGGAGTTTACTAAAGGGGCATCATTTCACTCAGATATTGCCACAACGTCTCAAGAATGTGCGTCCCTTTTATTCTAGCACTATATTTTGGTTCATTTTTATGTTGAAGAATGTAATATATTCCGTTTCTTGGTTCATAAAGTTCTCACATGTGAAATTAAATTCCCAAAGAAATTGTTTCGTCATTGGTTTTCACAATACATTATTTGTTTGACTTATTGTTATTAGTTTATAGACAATAACTCGAATAACTGGACACATTCCAAAGGAAGGACCTTGGTAGAGGCTTTGTTTCAGATGGTATCATTTTGCTGGATTAGACTGATGACATTATAACAAGTGCTAAGGTGCAGTTGAACATAAATGTTTTGGAGACCAAGGGATTTCTCTTGAGTTGTCCAAATACCGAATTTACAAAAATTAGTTAGGTTTAGGAAAGGAGGATGGATGAGAGTATGTATAGTAAACAATGAGTAGGAAGGAAGAGTACCCACAACTAAGTAAGGGCAATCCGGTGCACTGAAGCTTCCGCATATGCAGGGTCCAGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCCTGTTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCGTGACCTTACAGTCACATGACAACAACTTTACCAGTTGCGCCAAGGTTACCCCTCAGTACCCACAACTAAGTGTTTTAGATAATTAGGGTGTATCTTACAAAAGAAAGGATTGATAATAATGTCCCACAATATCCAAACAGGACAGGTTAAAGTAGAAAAATGTTTCAGGTGTTTGTATGTGCCTTTAAGTAGAAAAAGTTTTACAAAATCCTAGTAAGATTTGCAACTATGTATGGGTCAGAAATGTTGGGAAATAAACTGCAATCATGAGCATAAATGATGGTTGTAGGAATGAGTGGAGTATGGGACGAGTGGGCATACTGAGATGGATAGGTTTAAAGTGAATTCGTTAGATAAAAAATTGGAAAAGCTTCAATACAAAAAAAATTGACGGTTTAATTAGTTTAAAGTTAGGGTAGCTACTATATGGATAATGATTGACAAATCGTATATCATACTACCACCACATGCCTTCATAATATGCGAGGTTGAAGATGGCATGTTGGTAACTCTTACAAATGGGTAGGGGGAGATGAAAAAAAATGTGATAAAACTTGAAAGACTATTGAGAAGAATTTAAAGTACCCGGCATCAGGAAATTCTATGTAGCTAAATAACTATTTTATTTTTTTACTTATAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTATTTGTTTTTTTACTTATACGATATATTGATACTTCTTTTCAGATCCAGAACAACCTGTTTGCGTTATTACTGGTTTGCCTGCCAAGTAAGAGCCTTTCTTGATGTATTGATGTGATTGTCACTGATTGATTACCAGTAGTTCAGTTGGATTATTAAAAAAAAAAAAAAAGAAGTAGTTCAGCCGGAATATTTCCCTTTGTCTATAGCCACTGTACCTCAAATATTGTTAAGGAGTTCTCTCTTGATACAGGTACCGTGATCCAAAGACTGGGCTGCCATACGCTACAAAAGAAGCTTTTAAAATAATTCGACAACGGTATGACCTTCTAGATTGCAAGTAAACTTTTTCTGAATGTGTATTGAATTTGTCCTAATATTCTTTTATAACAGTATGTTAATGTGATTCACTTCATAGGAGTATTTTACAAAAACATCGACCAAAAAGATAACTTTTTATGATGCTATTTTCTCGCTACTCTCTCGTTTTTTTTTTCATTCTGCAATGGTTTGATCTAATGTTCCAATAGAAGGATGACTGCAGACCAGTTTTCCCCACCATGATGTTATTGAATTACTAAAGCTATCAAAGTTATTTTGAATACAGAATAGAATAGCATGAAATTACAAACCAATGAACCATGTCATCTTAAGAAGGAAAGAAGTAATTGACAAATTGATGCTCAACTTGCGTCATTTGGATATTATCTTCGTTTATTCTTTTTCTTAGTCTTGAAGTCCAAGGCACATACTATTGTTGGATAGCTAATGATGGGTGTTATGTATAAAAACCATGCACGTGCCTTCACCCAATTTCTCTAGCTTTTCAGAGAGAGATGGTTTAGACATAGTATTAGAGCTTCCACACCCATGAAATTGTGTTTAATCCTAGTTATAATTGTTCTTATAATATCGAAAAATTAAATTTCACGAGTGTCAGATAGCTTGTATGTTGTCTGCCAACTCTACACGTCAAGCTGTAAGAGCTATTGCATGAGGGGTTGTGTTAAATATAAAAGCATTCATGTGGGAGTTGGTTAATGATAGTAGGATTAGGCTTTATTTTAAAAAACGTGTTGATCATTGAATATATTGTTCAGAGCATGTAATCAAGTGATTGCTTGTAATTGATTTTAATTGGGGATTATTTTGCAGCATTCTGGATGAAAGTGCAAACTCTAGAAAAGAAACGAATATGGGAGGCTTATATGATTCAGTTTCTGGATATGGTTTTCCAACCAAGAAAAAGAGATCGACAATGCGAGATAAAAATATACATCCACATGATCGGTCCTTGGCTCGGTTTCGTAGAATTCCTACTTTTGAGGATGAAGATTCTGACTAA

Protein sequence

>MS.gene35004.t1

MEEKNSGEEERSNLLLLDRASRATRGKRLSKLLDDEVQQDELFWGQDALKEEDEDDNYQEEAEIADEFDSDFDQDEPEPDEEQPQNDDERMNKKKRLVYPGKATLAKKKKKKKILSNLDDPPKIDDNDDGDDDKNNKNNNQDDDAKEVMIRKSTRTSVIVRQAEREAIREALKATYKPVIRKKGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIHYISQNGCSYLEFTKGASFHSDIATTSQEYPEQPVCVITGLPAKYRDPKTGLPYATKEAFKIIRQRILDESANSRKETNMGGLYDSVSGYGFPTKKKRSTMRDKNIHPHDRSLARFRRIPTFEDEDSD