Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35004.t1 | RHN42290.1 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 4.40E-127 | 464.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35004.t1 | F4IP06 | 58.1 | 360 | 146 | 2 | 9 | 363 | 4 | 363 | 1.7e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35004.t1 | A0A396GMM6 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 3.2e-127 | 464.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35004 | 0.836355 | 9.82E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene35004 | 0.840652 | 7.64E-58 | -1.69E-46 |
| MS.gene049341 | MS.gene35004 | 0.824472 | 7.92E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene35004 | 0.832059 | 1.17E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene35004 | 0.806777 | 6.98E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene35004 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene35004 | 0.839229 | 1.80E-57 | -1.69E-46 |
| MS.gene050386 | MS.gene35004 | 0.836458 | 9.25E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene35004 | 0.836235 | 1.05E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene35004 | 0.81565 | 8.29E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene35004 | 0.828642 | 8.03E-55 | -1.69E-46 |
| MS.gene051180 | MS.gene35004 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene35004 | 0.821267 | 4.42E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene35004 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene35004 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene35004 | 0.812787 | 3.56E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene35004 | 0.802196 | 6.29E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene35004 | 0.813137 | 2.98E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene35004 | 0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene35004 | 0.83769 | 4.48E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene35004 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene35004 | 0.826885 | 2.12E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene35004 | 0.819696 | 1.01E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene35004 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene35004 | 0.837782 | 4.24E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene35004 | 0.829036 | 6.44E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene35004 | 0.822142 | 2.77E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene35004 | 0.833789 | 4.36E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene35004 | 0.813304 | 2.74E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene35004 | 0.817743 | 2.82E-52 | -1.69E-46 |
| MS.gene053565 | MS.gene35004 | 0.841316 | 5.12E-58 | -1.69E-46 |
| MS.gene05364 | MS.gene35004 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene35004 | 0.813258 | 2.80E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene35004 | 0.854198 | 1.44E-61 | -1.69E-46 |
| MS.gene055363 | MS.gene35004 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene055512 | MS.gene35004 | 0.870333 | 1.58E-66 | -1.69E-46 |
| MS.gene055890 | MS.gene35004 | 0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene055891 | MS.gene35004 | 0.805053 | 1.61E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene35004 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene35004 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene35004 | 0.835934 | 1.26E-56 | -1.69E-46 |
| MS.gene056760 | MS.gene35004 | 0.843072 | 1.75E-58 | -1.69E-46 |
| MS.gene057057 | MS.gene35004 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene35004 | 0.822714 | 2.04E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene35004 | 0.801993 | 6.93E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene35004 | 0.822323 | 2.52E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene35004 | 0.815073 | 1.11E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene35004 | 0.819539 | 1.10E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene35004 | 0.814908 | 1.21E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene35004 | 0.80762 | 4.62E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene35004 | 0.815876 | 7.38E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene35004 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene35004 | 0.800175 | 1.63E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene35004 | 0.805685 | 1.18E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene35004 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene35004 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene059317 | MS.gene35004 | 0.814063 | 1.86E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene35004 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene35004 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene35004 | 0.829279 | 5.63E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene35004 | 0.800197 | 1.61E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene35004 | 0.815369 | 9.58E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene35004 | 0.801107 | 1.05E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene35004 | 0.827576 | 1.45E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35004.t1 | AT2G36740 | 59.710 | 345 | 130 | 3 | 14 | 351 | 9 | 351 | 1.77e-129 | 375 |
| MS.gene35004.t1 | AT2G36740 | 62.126 | 301 | 105 | 3 | 10 | 303 | 5 | 303 | 2.01e-116 | 341 |
Find 64 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTATCATCAATTT+TGG | 0.077559 | 4.4:-18408882 | None:intergenic |
| GAAGAAAATCTTATCTAATT+TGG | 0.115613 | 4.4:+18408850 | MS.gene35004:CDS |
| GGCTTATATGATTCAGTTTC+TGG | 0.127458 | 4.4:+18412572 | MS.gene35004:CDS |
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4.4:+18409852 | MS.gene35004:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4.4:-18409669 | None:intergenic |
| TATGATTCAGTTTCTGGATA+TGG | 0.207235 | 4.4:+18412578 | MS.gene35004:CDS |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4.4:+18409919 | MS.gene35004:CDS |
| CGGCGATTTCGGCTTCTTCT+TGG | 0.253320 | 4.4:-18408600 | None:intergenic |
| GTCGAATTCGTCGGCGATTT+CGG | 0.266319 | 4.4:-18408611 | None:intergenic |
| TTCAACAAGATGAATTGTTC+TGG | 0.284399 | 4.4:+18408536 | MS.gene35004:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4.4:+18411424 | MS.gene35004:CDS |
| CTCTAGAAAAGAAACGAATA+TGG | 0.304931 | 4.4:+18412547 | MS.gene35004:CDS |
| GGCTGTTCTTCATCGGGTTC+AGG | 0.307025 | 4.4:-18408746 | None:intergenic |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4.4:-18408978 | None:intergenic |
| ACAATGGAGGAAAAGAATTC+AGG | 0.384881 | 4.4:+18408424 | None:intergenic |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4.4:-18411418 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4.4:+18410061 | MS.gene35004:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4.4:-18411634 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4.4:-18409041 | None:intergenic |
| AGATGAATTGTTCTGGGGTC+AGG | 0.416421 | 4.4:+18408543 | MS.gene35004:CDS |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4.4:+18409949 | MS.gene35004:CDS |
| AAGAAGCGATTGGTATATCC+TGG | 0.422746 | 4.4:+18408797 | MS.gene35004:CDS |
| TCAACAAGATGAATTGTTCT+GGG | 0.454323 | 4.4:+18408537 | MS.gene35004:CDS |
| CTTCCTAATCATTACCTCCT+TGG | 0.455438 | 4.4:-18408951 | None:intergenic |
| TTAGCCAATGTCGCCTTCCC+AGG | 0.459198 | 4.4:-18408815 | None:intergenic |
| CCTCCTTGGCATCATCGTCC+TGG | 0.471257 | 4.4:-18408937 | None:intergenic |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4.4:+18410060 | MS.gene35004:CDS |
| ATGCCAAGGAGGTAATGATT+AGG | 0.476554 | 4.4:+18408948 | MS.gene35004:CDS |
| CACATGATCGGTCCTTGGCT+CGG | 0.478772 | 4.4:+18412651 | MS.gene35004:CDS |
| GAGATCGAATCTTCTACTAC+TGG | 0.491006 | 4.4:+18408456 | MS.gene35004:CDS |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4.4:-18409000 | None:intergenic |
| AGTTACGTCTTGATCGAAAT+CGG | 0.494921 | 4.4:-18408635 | None:intergenic |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4.4:-18411427 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4.4:-18411451 | None:intergenic |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4.4:-18408987 | None:intergenic |
| ACATCCACATGATCGGTCCT+TGG | 0.525200 | 4.4:+18412646 | MS.gene35004:CDS |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4.4:+18411622 | MS.gene35004:intron |
| GAATCTTCATCCTCAAAAGT+AGG | 0.528439 | 4.4:-18412686 | None:intergenic |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4.4:+18409845 | MS.gene35004:intron |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4.4:-18409017 | None:intergenic |
| TCTAGAAAAGAAACGAATAT+GGG | 0.542033 | 4.4:+18412548 | MS.gene35004:CDS |
| ATATCCTGGGAAGGCGACAT+TGG | 0.555043 | 4.4:+18408811 | MS.gene35004:CDS |
| AAAATATACATCCACATGAT+CGG | 0.556585 | 4.4:+18412639 | MS.gene35004:CDS |
| AAAATTGATGATAATGATGA+CGG | 0.559093 | 4.4:+18408884 | MS.gene35004:CDS |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4.4:+18409666 | MS.gene35004:intron |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4.4:+18409027 | MS.gene35004:CDS |
| CGTGCATCTCGAGCGACAAG+AGG | 0.584790 | 4.4:+18408481 | MS.gene35004:CDS |
| AGAAGCGATTGGTATATCCT+GGG | 0.596937 | 4.4:+18408798 | MS.gene35004:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4.4:+18410062 | MS.gene35004:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4.4:-18410106 | None:intergenic |
| CGAGCCAAGGACCGATCATG+TGG | 0.604117 | 4.4:-18412650 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4.4:+18409692 | MS.gene35004:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4.4:-18409943 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4.4:-18411627 | None:intergenic |
| CAACCAGGACGATGATGCCA+AGG | 0.612779 | 4.4:+18408934 | MS.gene35004:CDS |
| AAACAACAAGAACAACAACC+AGG | 0.612812 | 4.4:+18408919 | MS.gene35004:CDS |
| GCGATTGGTATATCCTGGGA+AGG | 0.627485 | 4.4:+18408802 | MS.gene35004:CDS |
| AGAAAAGAAACGAATATGGG+AGG | 0.647868 | 4.4:+18412551 | MS.gene35004:CDS |
| AATTCTACGAAACCGAGCCA+AGG | 0.655235 | 4.4:-18412663 | None:intergenic |
| CAACAAGATGAATTGTTCTG+GGG | 0.658361 | 4.4:+18408538 | MS.gene35004:CDS |
| GAAATCGGAGTCGAATTCGT+CGG | 0.659651 | 4.4:-18408620 | None:intergenic |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4.4:+18409671 | MS.gene35004:CDS |
| CCAGGACGATGATGCCAAGG+AGG | 0.685706 | 4.4:+18408937 | MS.gene35004:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4.4:+18411623 | MS.gene35004:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTCTTTTTTTTTT+TGG | + | chr4.4:18409641-18409660 | MS.gene35004:intron | 10.0% |
| !! | TACTGTTATAAAAGAATATT+AGG | - | chr4.4:18411746-18411765 | None:intergenic | 15.0% |
| !! | TTATAAGAACAATTATAACT+AGG | - | chr4.4:18412261-18412280 | None:intergenic | 15.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | + | chr4.4:18411065-18411084 | MS.gene35004:intron | 15.0% |
| !!! | ATCATAAAAAGTTATCTTTT+TGG | - | chr4.4:18411814-18411833 | None:intergenic | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | - | chr4.4:18410474-18410493 | None:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | + | chr4.4:18411087-18411106 | MS.gene35004:intron | 15.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | - | chr4.4:18410134-18410153 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | - | chr4.4:18409559-18409578 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | - | chr4.4:18410133-18410152 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | + | chr4.4:18410472-18410491 | MS.gene35004:intron | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | - | chr4.4:18409354-18409373 | None:intergenic | 20.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | + | chr4.4:18408850-18408869 | MS.gene35004:CDS | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | + | chr4.4:18411036-18411055 | MS.gene35004:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | + | chr4.4:18410478-18410497 | MS.gene35004:intron | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | + | chr4.4:18410840-18410859 | MS.gene35004:intron | 20.0% |
| !! | TTAGTAATTCAATAACATCA+TGG | - | chr4.4:18411932-18411951 | None:intergenic | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | - | chr4.4:18409353-18409372 | None:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | + | chr4.4:18408884-18408903 | MS.gene35004:CDS | 20.0% |
| !!! | AAATATAAAAGCATTCATGT+GGG | + | chr4.4:18412379-18412398 | MS.gene35004:intron | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | + | chr4.4:18410758-18410777 | MS.gene35004:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | - | chr4.4:18410467-18410486 | None:intergenic | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | + | chr4.4:18410759-18410778 | MS.gene35004:intron | 20.0% |
| !!! | CTTGTAATTGATTTTAATTG+GGG | + | chr4.4:18412491-18412510 | MS.gene35004:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | + | chr4.4:18411668-18411687 | MS.gene35004:CDS | 20.0% |
| !!! | GCTTGTAATTGATTTTAATT+GGG | + | chr4.4:18412490-18412509 | MS.gene35004:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | + | chr4.4:18411086-18411105 | MS.gene35004:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | - | chr4.4:18410878-18410897 | None:intergenic | 20.0% |
| !!! | TAAATATAAAAGCATTCATG+TGG | + | chr4.4:18412378-18412397 | MS.gene35004:intron | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | - | chr4.4:18408884-18408903 | None:intergenic | 20.0% |
| !!! | TGCTTGTAATTGATTTTAAT+TGG | + | chr4.4:18412489-18412508 | MS.gene35004:intron | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | + | chr4.4:18410134-18410153 | MS.gene35004:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | - | chr4.4:18409282-18409301 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCATTCTGCAA+TGG | + | chr4.4:18411857-18411876 | MS.gene35004:intron | 20.0% |
| ! | AAAATATACATCCACATGAT+CGG | + | chr4.4:18412639-18412658 | MS.gene35004:CDS | 25.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | + | chr4.4:18410483-18410502 | MS.gene35004:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | - | chr4.4:18409819-18409838 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | + | chr4.4:18409368-18409387 | MS.gene35004:intron | 25.0% |
| ! | AATGAATAAAAAGAAGCGAT+TGG | + | chr4.4:18408787-18408806 | MS.gene35004:CDS | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | - | chr4.4:18410233-18410252 | None:intergenic | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | + | chr4.4:18409852-18409871 | MS.gene35004:CDS | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | - | chr4.4:18410023-18410042 | None:intergenic | 25.0% |
| ! | AGGATTAAACACAATTTCAT+GGG | - | chr4.4:18412241-18412260 | None:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | + | chr4.4:18409949-18409968 | MS.gene35004:CDS | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | + | chr4.4:18410176-18410195 | MS.gene35004:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | + | chr4.4:18410521-18410540 | MS.gene35004:intron | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | + | chr4.4:18409460-18409479 | MS.gene35004:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | - | chr4.4:18409355-18409374 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | + | chr4.4:18410908-18410927 | MS.gene35004:intron | 25.0% |
| ! | TAATTCAATAACATCATGGT+GGG | - | chr4.4:18411928-18411947 | None:intergenic | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | - | chr4.4:18409458-18409477 | None:intergenic | 25.0% |
| ! | TAGGATTAAACACAATTTCA+TGG | - | chr4.4:18412242-18412261 | None:intergenic | 25.0% |
| ! | TCTAGAAAAGAAACGAATAT+GGG | + | chr4.4:18412548-18412567 | MS.gene35004:CDS | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | - | chr4.4:18409059-18409078 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | + | chr4.4:18409061-18409080 | MS.gene35004:intron | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | - | chr4.4:18408885-18408904 | None:intergenic | 25.0% |
| !! | TAATTCTTCTTGATTTTCTC+AGG | + | chr4.4:18408721-18408740 | MS.gene35004:intron | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | - | chr4.4:18410755-18410774 | None:intergenic | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | + | chr4.4:18409062-18409081 | MS.gene35004:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | + | chr4.4:18409820-18409839 | MS.gene35004:intron | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | - | chr4.4:18410756-18410775 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | + | chr4.4:18410033-18410052 | MS.gene35004:intron | 25.0% |
| AAAAAAAGAAGTAGTTCAGC+CGG | + | chr4.4:18411536-18411555 | MS.gene35004:intron | 30.0% | |
| AAGTTTACTTGCAATCTAGA+AGG | - | chr4.4:18411699-18411718 | None:intergenic | 30.0% | |
| AATTCAATAACATCATGGTG+GGG | - | chr4.4:18411927-18411946 | None:intergenic | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | - | chr4.4:18410906-18410925 | None:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | + | chr4.4:18409953-18409972 | MS.gene35004:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | - | chr4.4:18411558-18411577 | None:intergenic | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | + | chr4.4:18410525-18410544 | MS.gene35004:intron | 30.0% | |
| ATTGTTGGATAGCTAATGAT+GGG | + | chr4.4:18412124-18412143 | MS.gene35004:intron | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | + | chr4.4:18410232-18410251 | MS.gene35004:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | - | chr4.4:18410234-18410253 | None:intergenic | 30.0% | |
| CTATCTTGAAAAACAGCTTA+TGG | - | chr4.4:18409223-18409242 | None:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | + | chr4.4:18411583-18411602 | MS.gene35004:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | - | chr4.4:18409789-18409808 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | - | chr4.4:18411591-18411610 | None:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | - | chr4.4:18410191-18410210 | None:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | + | chr4.4:18409741-18409760 | MS.gene35004:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | + | chr4.4:18410907-18410926 | MS.gene35004:intron | 30.0% | |
| GTAATTCAATAACATCATGG+TGG | - | chr4.4:18411929-18411948 | None:intergenic | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | + | chr4.4:18409919-18409938 | MS.gene35004:CDS | 30.0% | |
| GTTAATGTGATTCACTTCAT+AGG | + | chr4.4:18411767-18411786 | MS.gene35004:intron | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | - | chr4.4:18411509-18411528 | None:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | + | chr4.4:18410298-18410317 | MS.gene35004:intron | 30.0% | |
| TATTGTTGGATAGCTAATGA+TGG | + | chr4.4:18412123-18412142 | MS.gene35004:intron | 30.0% | |
| TCAACAAGATGAATTGTTCT+GGG | + | chr4.4:18408537-18408556 | MS.gene35004:CDS | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | - | chr4.4:18411469-18411488 | None:intergenic | 30.0% | |
| TCTGAAAAGCTAGAGAAATT+GGG | - | chr4.4:18412182-18412201 | None:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | + | chr4.4:18410391-18410410 | MS.gene35004:intron | 30.0% | |
| TGATCTAATGTTCCAATAGA+AGG | + | chr4.4:18411882-18411901 | MS.gene35004:intron | 30.0% | |
| TTCAACAAGATGAATTGTTC+TGG | + | chr4.4:18408536-18408555 | MS.gene35004:CDS | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | - | chr4.4:18409624-18409643 | None:intergenic | 30.0% |
| ! | ATTCTTTCATCATCGTTTTG+TGG | - | chr4.4:18408770-18408789 | None:intergenic | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | + | chr4.4:18410061-18410080 | MS.gene35004:CDS | 30.0% |
| ! | CTCTAGAAAAGAAACGAATA+TGG | + | chr4.4:18412547-18412566 | MS.gene35004:CDS | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | + | chr4.4:18410415-18410434 | MS.gene35004:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | + | chr4.4:18410062-18410081 | MS.gene35004:CDS | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | - | chr4.4:18411583-18411602 | None:intergenic | 30.0% |
| ! | TAATCGGTATGAATGAGTTT+TGG | - | chr4.4:18408667-18408686 | None:intergenic | 30.0% |
| ! | TATGATTCAGTTTCTGGATA+TGG | + | chr4.4:18412578-18412597 | MS.gene35004:CDS | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | - | chr4.4:18408881-18408900 | None:intergenic | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | + | chr4.4:18410060-18410079 | MS.gene35004:CDS | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | + | chr4.4:18411260-18411279 | MS.gene35004:intron | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | + | chr4.4:18411193-18411212 | MS.gene35004:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | + | chr4.4:18409991-18410010 | MS.gene35004:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | + | chr4.4:18411194-18411213 | MS.gene35004:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | + | chr4.4:18410425-18410444 | MS.gene35004:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | + | chr4.4:18410047-18410066 | MS.gene35004:intron | 30.0% |
| AAACAACAAGAACAACAACC+AGG | + | chr4.4:18408919-18408938 | MS.gene35004:CDS | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | - | chr4.4:18411430-18411449 | None:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | + | chr4.4:18411101-18411120 | MS.gene35004:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | + | chr4.4:18410312-18410331 | MS.gene35004:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | - | chr4.4:18409989-18410008 | None:intergenic | 35.0% | |
| AGAAAAGAAACGAATATGGG+AGG | + | chr4.4:18412551-18412570 | MS.gene35004:CDS | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | + | chr4.4:18409237-18409256 | MS.gene35004:intron | 35.0% | |
| AGTTACGTCTTGATCGAAAT+CGG | - | chr4.4:18408638-18408657 | None:intergenic | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | + | chr4.4:18411169-18411188 | MS.gene35004:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | + | chr4.4:18410922-18410941 | MS.gene35004:intron | 35.0% | |
| CAACAAGATGAATTGTTCTG+GGG | + | chr4.4:18408538-18408557 | MS.gene35004:CDS | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | + | chr4.4:18409982-18410001 | MS.gene35004:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | + | chr4.4:18409845-18409864 | MS.gene35004:intron | 35.0% | |
| CTTAAGATGACATGGTTCAT+TGG | - | chr4.4:18412005-18412024 | None:intergenic | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | + | chr4.4:18409374-18409393 | MS.gene35004:intron | 35.0% | |
| CTTTCCTTCTTAAGATGACA+TGG | - | chr4.4:18412013-18412032 | None:intergenic | 35.0% | |
| GAATCTTCATCCTCAAAAGT+AGG | - | chr4.4:18412689-18412708 | None:intergenic | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | - | chr4.4:18409044-18409063 | None:intergenic | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | + | chr4.4:18410954-18410973 | MS.gene35004:intron | 35.0% | |
| GGCTTATATGATTCAGTTTC+TGG | + | chr4.4:18412572-18412591 | MS.gene35004:CDS | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | + | chr4.4:18410779-18410798 | MS.gene35004:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | + | chr4.4:18411199-18411218 | MS.gene35004:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | + | chr4.4:18409402-18409421 | MS.gene35004:intron | 35.0% | |
| TAAACACAATTTCATGGGTG+TGG | - | chr4.4:18412236-18412255 | None:intergenic | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | + | chr4.4:18411200-18411219 | MS.gene35004:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | - | chr4.4:18411282-18411301 | None:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | + | chr4.4:18410921-18410940 | MS.gene35004:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr4.4:18410650-18410669 | None:intergenic | 35.0% | |
| TGAACCATGTCATCTTAAGA+AGG | + | chr4.4:18412006-18412025 | MS.gene35004:intron | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | + | chr4.4:18410961-18410980 | MS.gene35004:intron | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | + | chr4.4:18409143-18409162 | MS.gene35004:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | - | chr4.4:18409946-18409965 | None:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | + | chr4.4:18410486-18410505 | MS.gene35004:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | - | chr4.4:18411167-18411186 | None:intergenic | 35.0% | |
| TTCCAAACAACACCTGATTA+TGG | + | chr4.4:18409609-18409628 | MS.gene35004:intron | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | + | chr4.4:18411499-18411518 | MS.gene35004:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | - | chr4.4:18411652-18411671 | None:intergenic | 35.0% |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | + | chr4.4:18409567-18409586 | MS.gene35004:intron | 35.0% |
| ! | CATTGTCGATCTCTTTTTCT+TGG | - | chr4.4:18412612-18412631 | None:intergenic | 35.0% |
| ! | CTCTGAAAAGCTAGAGAAAT+TGG | - | chr4.4:18412183-18412202 | None:intergenic | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | + | chr4.4:18410358-18410377 | MS.gene35004:intron | 35.0% |
| !! | TCGTAGAATTCCTACTTTTG+AGG | + | chr4.4:18412676-18412695 | MS.gene35004:CDS | 35.0% |
| !! | TTTCTTAGTCTTGAAGTCCA+AGG | + | chr4.4:18412093-18412112 | MS.gene35004:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | + | chr4.4:18410424-18410443 | MS.gene35004:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr4.4:18410649-18410668 | MS.gene35004:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | + | chr4.4:18411201-18411220 | MS.gene35004:intron | 40.0% | |
| AAGAAGCGATTGGTATATCC+TGG | + | chr4.4:18408797-18408816 | MS.gene35004:CDS | 40.0% | |
| AAGCTAGAGAAATTGGGTGA+AGG | - | chr4.4:18412176-18412195 | None:intergenic | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | + | chr4.4:18411602-18411621 | MS.gene35004:intron | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | + | chr4.4:18410558-18410577 | MS.gene35004:intron | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | - | chr4.4:18410444-18410463 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr4.4:18410656-18410675 | None:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | - | chr4.4:18411281-18411300 | None:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | + | chr4.4:18411159-18411178 | MS.gene35004:intron | 40.0% | |
| AGAAGCGATTGGTATATCCT+GGG | + | chr4.4:18408798-18408817 | MS.gene35004:CDS | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | + | chr4.4:18409671-18409690 | MS.gene35004:CDS | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | - | chr4.4:18411421-18411440 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | - | chr4.4:18409422-18409441 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | + | chr4.4:18410970-18410989 | MS.gene35004:intron | 40.0% | |
| ATGCCAAGGAGGTAATGATT+AGG | + | chr4.4:18408948-18408967 | MS.gene35004:CDS | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | + | chr4.4:18410812-18410831 | MS.gene35004:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | + | chr4.4:18411424-18411443 | MS.gene35004:CDS | 40.0% | |
| CAGCCAGTAATAAGGAAGAA+AGG | + | chr4.4:18409666-18409685 | MS.gene35004:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr4.4:18410655-18410674 | None:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | - | chr4.4:18411458-18411477 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.4:18410624-18410643 | None:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | - | chr4.4:18410829-18410848 | None:intergenic | 40.0% | |
| CTGTAAGAGCTATTGCATGA+GGG | + | chr4.4:18412348-18412367 | MS.gene35004:intron | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | - | chr4.4:18410819-18410838 | None:intergenic | 40.0% | |
| CTTCCTAATCATTACCTCCT+TGG | - | chr4.4:18408954-18408973 | None:intergenic | 40.0% | |
| GAGATCGAATCTTCTACTAC+TGG | + | chr4.4:18408456-18408475 | MS.gene35004:CDS | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | + | chr4.4:18410550-18410569 | MS.gene35004:intron | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | - | chr4.4:18410558-18410577 | None:intergenic | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | - | chr4.4:18409176-18409195 | None:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | + | chr4.4:18409692-18409711 | MS.gene35004:CDS | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | + | chr4.4:18411198-18411217 | MS.gene35004:intron | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | - | chr4.4:18411569-18411588 | None:intergenic | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | + | chr4.4:18409142-18409161 | MS.gene35004:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr4.4:18410700-18410719 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | - | chr4.4:18409423-18409442 | None:intergenic | 40.0% | |
| TCCAACAATAGTATGTGCCT+TGG | - | chr4.4:18412113-18412132 | None:intergenic | 40.0% | |
| TCCAAGGCACATACTATTGT+TGG | + | chr4.4:18412109-18412128 | MS.gene35004:intron | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | - | chr4.4:18409672-18409691 | None:intergenic | 40.0% | |
| TGTAAGAGCTATTGCATGAG+GGG | + | chr4.4:18412349-18412368 | MS.gene35004:intron | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | + | chr4.4:18410978-18410997 | MS.gene35004:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | + | chr4.4:18410490-18410509 | MS.gene35004:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | + | chr4.4:18410977-18410996 | MS.gene35004:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | + | chr4.4:18411267-18411286 | MS.gene35004:intron | 40.0% |
| ! | AGAGTACCCACAACTAAGTA+AGG | + | chr4.4:18410549-18410568 | MS.gene35004:intron | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | - | chr4.4:18411157-18411176 | None:intergenic | 40.0% |
| ! | GGGAGTTGGTTAATGATAGT+AGG | + | chr4.4:18412399-18412418 | MS.gene35004:intron | 40.0% |
| ! | GTCGATCTCTTTTTCTTGGT+TGG | - | chr4.4:18412608-18412627 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | - | chr4.4:18408756-18408775 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | - | chr4.4:18411160-18411179 | None:intergenic | 40.0% |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | - | chr4.4:18408755-18408774 | None:intergenic | 40.0% |
| !! | AAAAGCATTCATGTGGGAGT+TGG | + | chr4.4:18412385-18412404 | MS.gene35004:intron | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | + | chr4.4:18409720-18409739 | MS.gene35004:CDS | 40.0% |
| !! | GACCATAATCAGGTGTTGTT+TGG | - | chr4.4:18409614-18409633 | None:intergenic | 40.0% |
| !! | GGGATTATTTTGCAGCATTC+TGG | + | chr4.4:18412511-18412530 | MS.gene35004:intron | 40.0% |
| !!! | TCTAGCTTTTCAGAGAGAGA+TGG | + | chr4.4:18412188-18412207 | MS.gene35004:intron | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | + | chr4.4:18409658-18409677 | MS.gene35004:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | - | chr4.4:18411454-18411473 | None:intergenic | 45.0% | |
| AATTCTACGAAACCGAGCCA+AGG | - | chr4.4:18412666-18412685 | None:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | + | chr4.4:18410323-18410342 | MS.gene35004:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | + | chr4.4:18410316-18410335 | MS.gene35004:intron | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | + | chr4.4:18409027-18409046 | MS.gene35004:CDS | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | + | chr4.4:18410817-18410836 | MS.gene35004:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | - | chr4.4:18410820-18410839 | None:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | - | chr4.4:18410343-18410362 | None:intergenic | 45.0% | |
| GAAATCGGAGTCGAATTCGT+CGG | - | chr4.4:18408623-18408642 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | - | chr4.4:18409003-18409022 | None:intergenic | 45.0% | |
| GATGCTCAACTTGCGTCATT+TGG | + | chr4.4:18412049-18412068 | MS.gene35004:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.4:18410625-18410644 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.4:18410628-18410647 | None:intergenic | 45.0% | |
| GCTGTAAGAGCTATTGCATG+AGG | + | chr4.4:18412347-18412366 | MS.gene35004:intron | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | - | chr4.4:18410559-18410578 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | - | chr4.4:18411570-18411589 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr4.4:18410694-18410713 | None:intergenic | 45.0% | |
| GTCTGCAGTCATCCTTCTAT+TGG | - | chr4.4:18411897-18411916 | None:intergenic | 45.0% | |
| TACAGCTTGACGTGTAGAGT+TGG | - | chr4.4:18412333-18412352 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr4.4:18410693-18410712 | None:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | - | chr4.4:18408990-18409009 | None:intergenic | 45.0% | |
| ! | AACATCATGGTGGGGAAAAC+TGG | - | chr4.4:18411919-18411938 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.4:18411341-18411360 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | - | chr4.4:18410747-18410766 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.4:18411342-18411361 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.4:18410660-18410679 | MS.gene35004:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | - | chr4.4:18410745-18410764 | None:intergenic | 45.0% |
| !! | AGATGAATTGTTCTGGGGTC+AGG | + | chr4.4:18408543-18408562 | MS.gene35004:CDS | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | - | chr4.4:18410746-18410765 | None:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | + | chr4.4:18410344-18410363 | MS.gene35004:intron | 45.0% |
| !! | GAATTAATTAATTAATTAAT+CGG | - | chr4.4:18408683-18408702 | None:intergenic | 5.0% |
| ACATCCACATGATCGGTCCT+TGG | + | chr4.4:18412646-18412665 | MS.gene35004:CDS | 50.0% | |
| ACTGAAGCTTCCGCATATGC+AGG | + | chr4.4:18410584-18410603 | MS.gene35004:intron | 50.0% | |
| ATATCCTGGGAAGGCGACAT+TGG | + | chr4.4:18408811-18408830 | MS.gene35004:CDS | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | + | chr4.4:18410329-18410348 | MS.gene35004:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.4:18410716-18410735 | MS.gene35004:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.4:18411340-18411359 | MS.gene35004:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | + | chr4.4:18411177-18411196 | MS.gene35004:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | - | chr4.4:18410109-18410128 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | - | chr4.4:18410331-18410350 | None:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | + | chr4.4:18410585-18410604 | MS.gene35004:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.4:18411337-18411356 | None:intergenic | 50.0% | |
| GCGATTGGTATATCCTGGGA+AGG | + | chr4.4:18408802-18408821 | MS.gene35004:CDS | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | + | chr4.4:18411623-18411642 | MS.gene35004:intron | 50.0% | |
| GTCGAATTCGTCGGCGATTT+CGG | - | chr4.4:18408614-18408633 | None:intergenic | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | + | chr4.4:18411005-18411024 | MS.gene35004:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | chr4.4:18411329-18411348 | MS.gene35004:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | + | chr4.4:18411328-18411347 | MS.gene35004:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | + | chr4.4:18411622-18411641 | MS.gene35004:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.4:18411343-18411362 | None:intergenic | 50.0% |
| ! | GCGAACAATGACGGAAGTTC+TGG | - | chr4.4:18408981-18409000 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | - | chr4.4:18409020-18409039 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | + | chr4.4:18409873-18409892 | MS.gene35004:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.4:18410681-18410700 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | - | chr4.4:18410580-18410599 | None:intergenic | 55.0% | |
| CAACCAGGACGATGATGCCA+AGG | + | chr4.4:18408934-18408953 | MS.gene35004:CDS | 55.0% | |
| CACATGATCGGTCCTTGGCT+CGG | + | chr4.4:18412651-18412670 | MS.gene35004:CDS | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | + | chr4.4:18410597-18410616 | MS.gene35004:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.4:18411335-18411354 | MS.gene35004:intron | 55.0% | |
| CGGCGATTTCGGCTTCTTCT+TGG | - | chr4.4:18408603-18408622 | None:intergenic | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | - | chr4.4:18410597-18410616 | None:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | + | chr4.4:18411000-18411019 | MS.gene35004:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | + | chr4.4:18410987-18411006 | MS.gene35004:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | - | chr4.4:18411630-18411649 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | + | chr4.4:18410596-18410615 | MS.gene35004:intron | 55.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | - | chr4.4:18408749-18408768 | None:intergenic | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | + | chr4.4:18410986-18411005 | MS.gene35004:intron | 55.0% | |
| TTAGCCAATGTCGCCTTCCC+AGG | - | chr4.4:18408818-18408837 | None:intergenic | 55.0% | |
| ! | ATTGGGTGAAGGCACGTGCA+TGG | - | chr4.4:18412165-18412184 | None:intergenic | 55.0% |
| !! | TGGGTACTGAGGGGTAACCT+TGG | - | chr4.4:18410736-18410755 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.4:18410727-18410746 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | chr4.4:18410610-18410629 | MS.gene35004:intron | 60.0% | |
| CCAGGACGATGATGCCAAGG+AGG | + | chr4.4:18408937-18408956 | MS.gene35004:CDS | 60.0% | |
| CCTCCTTGGCATCATCGTCC+TGG | - | chr4.4:18408940-18408959 | None:intergenic | 60.0% | |
| CGAGCCAAGGACCGATCATG+TGG | - | chr4.4:18412653-18412672 | None:intergenic | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | + | chr4.4:18410595-18410614 | MS.gene35004:intron | 60.0% | |
| CGTGCATCTCGAGCGACAAG+AGG | + | chr4.4:18408481-18408500 | MS.gene35004:CDS | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | + | chr4.4:18410591-18410610 | MS.gene35004:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | - | chr4.4:18411637-18411656 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | chr4.4:18410612-18410631 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18408427 | 18412715 | 18408427 | ID=MS.gene35004 |
| chr4.4 | mRNA | 18408427 | 18412715 | 18408427 | ID=MS.gene35004.t1;Parent=MS.gene35004 |
| chr4.4 | exon | 18408427 | 18408651 | 18408427 | ID=MS.gene35004.t1.exon1;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18408427 | 18408651 | 18408427 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18408743 | 18409048 | 18408743 | ID=MS.gene35004.t1.exon2;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18408743 | 18409048 | 18408743 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18409669 | 18409741 | 18409669 | ID=MS.gene35004.t1.exon3;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18409669 | 18409741 | 18409669 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18409851 | 18409970 | 18409851 | ID=MS.gene35004.t1.exon4;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18409851 | 18409970 | 18409851 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18410055 | 18410123 | 18410055 | ID=MS.gene35004.t1.exon5;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18410055 | 18410123 | 18410055 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18411416 | 18411458 | 18411416 | ID=MS.gene35004.t1.exon6;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18411416 | 18411458 | 18411416 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18411624 | 18411689 | 18411624 | ID=MS.gene35004.t1.exon7;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18411624 | 18411689 | 18411624 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| chr4.4 | exon | 18412526 | 18412715 | 18412526 | ID=MS.gene35004.t1.exon8;Parent=MS.gene35004.t1 |
| chr4.4 | CDS | 18412526 | 18412715 | 18412526 | ID=cds.MS.gene35004.t1;Parent=MS.gene35004.t1 |
| Gene Sequence |
| Protein sequence |
