Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35560.t1 | XP_003602090.2 | 95.7 | 810 | 35 | 0 | 1 | 810 | 58 | 867 | 0.00E+00 | 1502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35560.t1 | Q84W56 | 72.2 | 828 | 205 | 6 | 1 | 809 | 90 | 911 | 0.0e+00 | 1164.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35560.t1 | G7J5I7 | 95.7 | 810 | 35 | 0 | 1 | 810 | 58 | 867 | 0.0e+00 | 1502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35560.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene35560 | 0.801296 | 9.63E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene35560 | 0.807342 | 5.30E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene35560 | 0.81924 | 1.29E-52 | -1.69E-46 |
| MS.gene050404 | MS.gene35560 | 0.801314 | 9.54E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene35560 | 0.826379 | 2.80E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene35560 | -0.837495 | 5.03E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene35560 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene35560 | 0.878221 | 3.35E-69 | -1.69E-46 |
| MS.gene050812 | MS.gene35560 | 0.816138 | 6.45E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene35560 | 0.860491 | 1.99E-63 | -1.69E-46 |
| MS.gene051240 | MS.gene35560 | 0.837351 | 5.47E-57 | -1.69E-46 |
| MS.gene051242 | MS.gene35560 | 0.845246 | 4.58E-59 | -1.69E-46 |
| MS.gene051244 | MS.gene35560 | 0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene35560 | 0.856471 | 3.15E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene35560 | -0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene35560 | 0.812576 | 3.95E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene35560 | 0.83206 | 1.17E-55 | -1.69E-46 |
| MS.gene052469 | MS.gene35560 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene052600 | MS.gene35560 | 0.856157 | 3.89E-62 | -1.69E-46 |
| MS.gene053330 | MS.gene35560 | 0.861065 | 1.33E-63 | -1.69E-46 |
| MS.gene053557 | MS.gene35560 | 0.814694 | 1.35E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene35560 | 0.809343 | 1.98E-50 | -1.69E-46 |
| MS.gene053907 | MS.gene35560 | 0.824412 | 8.18E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene35560 | 0.828522 | 8.58E-55 | -1.69E-46 |
| MS.gene053971 | MS.gene35560 | 0.829519 | 4.92E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene35560 | 0.82028 | 7.46E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene35560 | 0.841451 | 4.72E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene35560 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene35560 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene35560 | 0.862882 | 3.70E-64 | -1.69E-46 |
| MS.gene055971 | MS.gene35560 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene056305 | MS.gene35560 | 0.829564 | 4.80E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene35560 | 0.826346 | 2.85E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene35560 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene056664 | MS.gene35560 | 0.832523 | 9.01E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene35560 | 0.815713 | 8.03E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene35560 | -0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene35560 | 0.846087 | 2.71E-59 | -1.69E-46 |
| MS.gene057121 | MS.gene35560 | 0.819278 | 1.26E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene35560 | 0.823346 | 1.46E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene35560 | 0.834228 | 3.38E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene35560 | 0.81597 | 7.04E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene35560 | 0.884095 | 2.57E-71 | -1.69E-46 |
| MS.gene058276 | MS.gene35560 | 0.881313 | 2.66E-70 | -1.69E-46 |
| MS.gene058743 | MS.gene35560 | 0.862733 | 4.11E-64 | -1.69E-46 |
| MS.gene058746 | MS.gene35560 | 0.827643 | 1.40E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene35560 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene35560 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene35560 | 0.861511 | 9.74E-64 | -1.69E-46 |
| MS.gene05984 | MS.gene35560 | 0.829788 | 4.23E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene35560 | 0.8273 | 1.69E-54 | -1.69E-46 |
| MS.gene060083 | MS.gene35560 | 0.853133 | 2.92E-61 | -1.69E-46 |
| MS.gene060407 | MS.gene35560 | 0.872334 | 3.45E-67 | -1.69E-46 |
| MS.gene061049 | MS.gene35560 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene35560 | 0.806085 | 9.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35560.t1 | MTR_3g089020 | 97.654 | 810 | 19 | 0 | 1 | 810 | 58 | 867 | 0.0 | 1628 |
| MS.gene35560.t1 | MTR_4g103770 | 86.720 | 625 | 79 | 2 | 1 | 625 | 62 | 682 | 0.0 | 1127 |
| MS.gene35560.t1 | MTR_7g014365 | 88.372 | 43 | 5 | 0 | 659 | 701 | 203 | 245 | 2.32e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35560.t1 | AT5G63420 | 72.443 | 831 | 198 | 7 | 1 | 809 | 90 | 911 | 0.0 | 1194 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGATGCAAGATTTA+AGG | 0.149877 | 3.3:+64644054 | None:intergenic |
| GCCTTAAATCTTGCATCTTT+TGG | 0.181875 | 3.3:-64644055 | MS.gene35560:CDS |
| TTGGCTGGAAACACCTTAAA+AGG | 0.186376 | 3.3:-64642577 | MS.gene35560:CDS |
| TATTTGTTGGCATGTCTTTA+AGG | 0.202740 | 3.3:-64645128 | MS.gene35560:CDS |
| CAGGGGAATCGGATGAATTT+TGG | 0.207468 | 3.3:-64641419 | MS.gene35560:CDS |
| CAAATCTTTGTGGACATCTT+TGG | 0.240355 | 3.3:-64641073 | MS.gene35560:CDS |
| ATCCATGGATGAACATAAAA+AGG | 0.267555 | 3.3:-64642263 | MS.gene35560:CDS |
| ATTGGTGGTTTGGGTGAAAT+TGG | 0.278425 | 3.3:-64648162 | MS.gene35560:CDS |
| GATTCACTGGTTGTCCTTCC+AGG | 0.285382 | 3.3:+64645386 | None:intergenic |
| CAAGTGATTCATGCTCCTTC+AGG | 0.286343 | 3.3:+64643129 | None:intergenic |
| TTTCTTATAAATGTTGTATC+AGG | 0.286634 | 3.3:+64647753 | None:intergenic |
| CCATTACGTGTTCTTCCTAT+TGG | 0.296621 | 3.3:-64648180 | MS.gene35560:CDS |
| GAAGGCGATTTATCTGATTC+AGG | 0.300145 | 3.3:-64641438 | MS.gene35560:CDS |
| AAAGCTGCTGCCGATTTAAC+TGG | 0.300725 | 3.3:-64645266 | MS.gene35560:CDS |
| ATACAACATTTATAAGAAAA+TGG | 0.305949 | 3.3:-64647749 | MS.gene35560:CDS |
| CCTTGGAAAAGAAAATTTAC+AGG | 0.307438 | 3.3:-64642896 | MS.gene35560:intron |
| GATGTAGATTTGATGCAAAC+TGG | 0.345615 | 3.3:+64645303 | None:intergenic |
| TGAAAGGAAGGATGGCTCTC+TGG | 0.354049 | 3.3:-64641152 | MS.gene35560:CDS |
| CTTCTAAATGTTGATATTCC+AGG | 0.354594 | 3.3:+64642286 | None:intergenic |
| AATAGAAGGGTTCTTTCTAA+TGG | 0.365515 | 3.3:-64642928 | MS.gene35560:CDS |
| TGTTCTTCCTATTGGTGGTT+TGG | 0.367711 | 3.3:-64648172 | MS.gene35560:CDS |
| ATCTTTGGCACTTAAATATG+AGG | 0.370175 | 3.3:-64641058 | MS.gene35560:intron |
| ATCATATCGGTGCGTTGCCT+TGG | 0.376836 | 3.3:-64647683 | MS.gene35560:CDS |
| TTATTATATCAGGTATTTGT+TGG | 0.378839 | 3.3:-64645141 | MS.gene35560:intron |
| ATCGCAATGGCAATTACTTC+GGG | 0.381041 | 3.3:+64642376 | None:intergenic |
| ATTTCCATTCAATTTGTTGC+CGG | 0.381999 | 3.3:+64640103 | None:intergenic |
| GTTCTTCCTATTGGTGGTTT+GGG | 0.382494 | 3.3:-64648171 | MS.gene35560:CDS |
| TTTCACACTTGAGAAATAGA+AGG | 0.384172 | 3.3:-64642942 | MS.gene35560:CDS |
| GCATTTATTACCAGAGTTGA+TGG | 0.385749 | 3.3:+64645060 | None:intergenic |
| ATGCACCAGGTTATTAAGAA+TGG | 0.386575 | 3.3:-64642979 | MS.gene35560:intron |
| TTGTTTGCAGTGTGGTGGAC+TGG | 0.387215 | 3.3:+64642236 | None:intergenic |
| GGCAAATCCCACGCTGGTCC+TGG | 0.387256 | 3.3:-64642304 | MS.gene35560:CDS |
| GAATGAATTGTATGCTTGTT+GGG | 0.394201 | 3.3:-64648140 | MS.gene35560:CDS |
| CAACTTTCTCCCAGTTAAAT+CGG | 0.401807 | 3.3:+64645256 | None:intergenic |
| CTAGTTCTTCGTTGTTCTGA+TGG | 0.406463 | 3.3:-64646227 | MS.gene35560:CDS |
| TAGATGGCATCATTGTGATT+AGG | 0.412496 | 3.3:-64642710 | MS.gene35560:intron |
| AATGAAAACTTACACACATC+TGG | 0.415170 | 3.3:-64643696 | MS.gene35560:CDS |
| AGAATGAGAATTGCATTAGA+TGG | 0.417290 | 3.3:-64642726 | MS.gene35560:CDS |
| ATTGGATCAACAATAGTTAT+GGG | 0.421279 | 3.3:-64643723 | MS.gene35560:CDS |
| GATTGGATCAACAATAGTTA+TGG | 0.427638 | 3.3:-64643724 | MS.gene35560:CDS |
| CTATTCTTCACACTGGGGAT+TGG | 0.430987 | 3.3:-64646202 | MS.gene35560:CDS |
| ATCACACGGGACTCATTACC+AGG | 0.431628 | 3.3:+64643771 | None:intergenic |
| GAATTACCACAAGATGTCTA+TGG | 0.437596 | 3.3:-64642546 | MS.gene35560:CDS |
| GAGAAAGAGACCACTACAAC+TGG | 0.440855 | 3.3:-64641465 | MS.gene35560:CDS |
| CATTTGAGATAGAACCAATC+AGG | 0.444198 | 3.3:-64646280 | MS.gene35560:CDS |
| CTGGACAATGCAAATCTTTG+TGG | 0.444645 | 3.3:-64641083 | MS.gene35560:CDS |
| ACATGCATATCGTGGAGAAT+TGG | 0.445598 | 3.3:-64643673 | MS.gene35560:intron |
| GAATCACTTGGAAAATCAAC+TGG | 0.447489 | 3.3:-64643116 | MS.gene35560:CDS |
| TCTAATGGTTTCATTTCCCT+TGG | 0.447711 | 3.3:-64642913 | MS.gene35560:CDS |
| TATCGCAATGGCAATTACTT+CGG | 0.447759 | 3.3:+64642375 | None:intergenic |
| ACCAGAGTTGATGGGTCAAA+TGG | 0.450689 | 3.3:+64645069 | None:intergenic |
| TCATATCGGTGCGTTGCCTT+GGG | 0.452996 | 3.3:-64647682 | MS.gene35560:intron |
| GGAATGAATTGTATGCTTGT+TGG | 0.453098 | 3.3:-64648141 | MS.gene35560:CDS |
| TTACGTGTTCTTCCTATTGG+TGG | 0.453954 | 3.3:-64648177 | MS.gene35560:CDS |
| GAGATAAACACAAAATTGTC+TGG | 0.454789 | 3.3:-64642325 | MS.gene35560:CDS |
| TTTATCTGATTCAGGGGAAT+CGG | 0.455159 | 3.3:-64641430 | MS.gene35560:CDS |
| AGTGATGGTGACAAAGCATT+TGG | 0.457642 | 3.3:-64642777 | MS.gene35560:CDS |
| ATCAGACATTTCTTCAGACT+TGG | 0.457953 | 3.3:+64641281 | None:intergenic |
| CTGATTGGTTCTATCTCAAA+TGG | 0.459887 | 3.3:+64646281 | None:intergenic |
| ATTTCACCCAAACCACCAAT+AGG | 0.461698 | 3.3:+64648165 | None:intergenic |
| ATTGACGAGACACCACTTGA+TGG | 0.463031 | 3.3:-64646092 | MS.gene35560:CDS |
| GTTACAATAAGCAGATCCTT+AGG | 0.463234 | 3.3:+64644205 | None:intergenic |
| TCAACTGATGATGCAATGAA+TGG | 0.463811 | 3.3:+64641393 | None:intergenic |
| GATCTGCTTATTGTAACAAC+TGG | 0.465028 | 3.3:-64644199 | MS.gene35560:CDS |
| TCAACAAATGTGCTCTCACC+TGG | 0.467892 | 3.3:-64645404 | MS.gene35560:CDS |
| GATGGGATCAGCAGAAGTCC+TGG | 0.469354 | 3.3:-64641102 | MS.gene35560:CDS |
| CCTTGGTAAGTTTGAAAGCA+TGG | 0.473674 | 3.3:+64644026 | None:intergenic |
| ATGAATCGCATATCAGAGAT+TGG | 0.474239 | 3.3:-64643741 | MS.gene35560:CDS |
| TCTAATCAGGAGATCAAGAA+TGG | 0.475221 | 3.3:-64640193 | MS.gene35560:intron |
| CGATTTAACTGGGAGAAAGT+TGG | 0.476469 | 3.3:-64645255 | MS.gene35560:intron |
| AATCAGCTTCTTGACTTCCT+CGG | 0.476513 | 3.3:+64641212 | None:intergenic |
| CTCAGAGCTTGTTGGCTGAT+GGG | 0.478275 | 3.3:-64641119 | MS.gene35560:CDS |
| CACAAAGATTTGCATTGTCC+AGG | 0.480128 | 3.3:+64641084 | None:intergenic |
| TCTCAGAGCTTGTTGGCTGA+TGG | 0.481622 | 3.3:-64641120 | MS.gene35560:CDS |
| ATAGAATGAGTCACCCTGAT+TGG | 0.482517 | 3.3:+64646266 | None:intergenic |
| TTGGAAAATCAACTGGCATT+CGG | 0.486197 | 3.3:-64643109 | MS.gene35560:CDS |
| TCATCAGGTCATCCCAGCAT+TGG | 0.486824 | 3.3:-64646710 | MS.gene35560:intron |
| ATACAAAACAATATCTTCCT+TGG | 0.488079 | 3.3:+64644009 | None:intergenic |
| TCAAGAAGCTGATTGATTTG+CGG | 0.490229 | 3.3:-64641203 | MS.gene35560:CDS |
| CAATTCTCATTCTTTCATCA+AGG | 0.490742 | 3.3:+64642736 | None:intergenic |
| GACAAAGCATTTGGTACATC+CGG | 0.492657 | 3.3:-64642768 | MS.gene35560:CDS |
| ACAAAGAACAAGTTTGTCGC+TGG | 0.495185 | 3.3:-64646305 | MS.gene35560:CDS |
| GATGTCTATGGCTGGACAAA+GGG | 0.497228 | 3.3:-64642534 | MS.gene35560:CDS |
| AAGGCGATTTATCTGATTCA+GGG | 0.497243 | 3.3:-64641437 | MS.gene35560:CDS |
| CAAAAGTCCACTGGCTCACA+TGG | 0.497633 | 3.3:-64642455 | MS.gene35560:CDS |
| CATTCTATTCCTGACTGTTG+TGG | 0.499925 | 3.3:-64646251 | MS.gene35560:CDS |
| ACCTCTTGTTTGCAGTGTGG+TGG | 0.502821 | 3.3:+64642231 | None:intergenic |
| TTAGAAGCAGCTTGGAAGGA+TGG | 0.505273 | 3.3:-64645099 | MS.gene35560:CDS |
| AGGCACATTTCAGCTTCAAA+AGG | 0.507331 | 3.3:-64645341 | MS.gene35560:CDS |
| GATTTAAAGTTGTGAAAGGA+AGG | 0.508605 | 3.3:-64641164 | MS.gene35560:CDS |
| GAAAGGAAGGATGGCTCTCT+GGG | 0.509095 | 3.3:-64641151 | MS.gene35560:CDS |
| ACATTTCAGCTTCAAAAGGA+AGG | 0.510397 | 3.3:-64645337 | MS.gene35560:CDS |
| CTGAAGGAGCATGAATCACT+TGG | 0.511676 | 3.3:-64643128 | MS.gene35560:CDS |
| CGTTATATCCTCATTGATGC+TGG | 0.516389 | 3.3:-64648108 | MS.gene35560:CDS |
| AACAAGTATTCTCCATGTAC+AGG | 0.517823 | 3.3:+64643152 | None:intergenic |
| TGGCTGGAAACACCTTAAAA+GGG | 0.519920 | 3.3:-64642576 | MS.gene35560:CDS |
| AGAGATATCTCAGAGCTTGT+TGG | 0.522256 | 3.3:-64641127 | MS.gene35560:CDS |
| TGCATCTTCCTTTACAATGG+AGG | 0.526281 | 3.3:-64646668 | MS.gene35560:intron |
| TATTGATGCTTATGCACCTA+AGG | 0.528326 | 3.3:-64644221 | MS.gene35560:CDS |
| GACAGATTTAAAGTTGTGAA+AGG | 0.528331 | 3.3:-64641168 | MS.gene35560:CDS |
| GCATCAAATCTACATCGGAT+TGG | 0.529989 | 3.3:-64645296 | MS.gene35560:CDS |
| TTCATCAAGGAAGAGTTCAC+CGG | 0.530019 | 3.3:+64642749 | None:intergenic |
| TCAATTTGTCAGGTTATCCC+TGG | 0.531224 | 3.3:-64643789 | MS.gene35560:intron |
| CAGCATCAATGAGGATATAA+CGG | 0.531872 | 3.3:+64648109 | None:intergenic |
| GGACATACTTAGAAGCAGCT+TGG | 0.532316 | 3.3:-64645107 | MS.gene35560:CDS |
| ATCAACATTTAGAAGATCCA+TGG | 0.532606 | 3.3:-64642278 | MS.gene35560:CDS |
| TTGACGAGACACCACTTGAT+GGG | 0.533040 | 3.3:-64646091 | MS.gene35560:CDS |
| TCCATTTGACCCATCAACTC+TGG | 0.534282 | 3.3:-64645070 | MS.gene35560:intron |
| AGAACTAGTCCACAACAGTC+AGG | 0.535143 | 3.3:+64646242 | None:intergenic |
| TACCACAAGATGTCTATGGC+TGG | 0.535188 | 3.3:-64642542 | MS.gene35560:CDS |
| TCTTCACACTGGGGATTGGA+AGG | 0.536502 | 3.3:-64646198 | MS.gene35560:intron |
| CATGGTCATGAAGATCATAT+CGG | 0.538341 | 3.3:-64647696 | MS.gene35560:CDS |
| GGTGTATTGGAATCCAATGC+TGG | 0.538955 | 3.3:+64646697 | None:intergenic |
| GCCGAATACCTCCATTGTAA+AGG | 0.539763 | 3.3:+64646660 | None:intergenic |
| TAAAGTTGTGAAAGGAAGGA+TGG | 0.540086 | 3.3:-64641160 | MS.gene35560:CDS |
| ATCTGCCACAACAGATTCAC+TGG | 0.540628 | 3.3:+64645373 | None:intergenic |
| TTGTGGCAGATTCATTATTG+AGG | 0.541904 | 3.3:-64645361 | MS.gene35560:CDS |
| AGATTCTGTTCAACGTAGGA+TGG | 0.542555 | 3.3:-64648232 | MS.gene35560:CDS |
| ATTAAGAATGGAGAGATGCT+TGG | 0.543149 | 3.3:-64642967 | MS.gene35560:CDS |
| ATACTTAGAAGCAGCTTGGA+AGG | 0.544162 | 3.3:-64645103 | MS.gene35560:CDS |
| TTAGAGGAACTCTCTAAAGA+AGG | 0.550937 | 3.3:-64646047 | MS.gene35560:CDS |
| CAAAGAACAAGTTTGTCGCT+GGG | 0.552337 | 3.3:-64646304 | MS.gene35560:CDS |
| CATTTCAGCTTCAAAAGGAA+GGG | 0.552543 | 3.3:-64645336 | MS.gene35560:CDS |
| GCCATTGCGATAGAAAATCC+TGG | 0.555157 | 3.3:-64642364 | MS.gene35560:CDS |
| CTAATCAGGAGATCAAGAAT+GGG | 0.558723 | 3.3:-64640192 | MS.gene35560:intron |
| CTGTCCCGTCAAAAGTCCAC+TGG | 0.559295 | 3.3:-64642464 | MS.gene35560:CDS |
| CATTTATTACCAGAGTTGAT+GGG | 0.561091 | 3.3:+64645061 | None:intergenic |
| GTCGGAGATGTTGAGGAAGA+TGG | 0.562067 | 3.3:-64642422 | MS.gene35560:CDS |
| TCACAACTTTAAATCTGTCA+CGG | 0.562346 | 3.3:+64641172 | None:intergenic |
| AGATGTTGAGGAAGATGGTG+AGG | 0.567241 | 3.3:-64642417 | MS.gene35560:CDS |
| TTGGCAATATCTTGAGGACA+TGG | 0.567651 | 3.3:-64640152 | MS.gene35560:CDS |
| GAACTGTGTCGGAGATGTTG+AGG | 0.569522 | 3.3:-64642429 | MS.gene35560:CDS |
| ATGGAACTATTCTTCACACT+GGG | 0.571280 | 3.3:-64646208 | MS.gene35560:CDS |
| GTCCAGCCATAGACATCTTG+TGG | 0.573025 | 3.3:+64642540 | None:intergenic |
| ACCACTACAACTGGAGCTGA+AGG | 0.573383 | 3.3:-64641456 | MS.gene35560:CDS |
| CTCTAAAGAAGGAGTAACAT+TGG | 0.574233 | 3.3:-64646036 | MS.gene35560:intron |
| TTCACACTTGAGAAATAGAA+GGG | 0.575027 | 3.3:-64642941 | MS.gene35560:CDS |
| AGATGTCTATGGCTGGACAA+AGG | 0.582028 | 3.3:-64642535 | MS.gene35560:CDS |
| CAATGGTTATGTTTCACGAA+AGG | 0.585188 | 3.3:-64641352 | MS.gene35560:CDS |
| GCCTTCAGCTCCAGTTGTAG+TGG | 0.589034 | 3.3:+64641455 | None:intergenic |
| GTTCTTTCCATGTGAGCCAG+TGG | 0.589970 | 3.3:+64642448 | None:intergenic |
| AAGCTGCTGCCGATTTAACT+GGG | 0.591068 | 3.3:-64645265 | MS.gene35560:CDS |
| TGGTAATGAGTCCCGTGTGA+TGG | 0.593761 | 3.3:-64643769 | MS.gene35560:CDS |
| CCAATAGGAAGAACACGTAA+TGG | 0.600542 | 3.3:+64648180 | None:intergenic |
| AGCAGCTTGGAAGGATGGAA+AGG | 0.602363 | 3.3:-64645094 | MS.gene35560:CDS |
| TCACATGGAAAGAACTGTGT+CGG | 0.607611 | 3.3:-64642440 | MS.gene35560:CDS |
| CCATGCTTTCAAACTTACCA+AGG | 0.609185 | 3.3:-64644026 | MS.gene35560:CDS |
| GACAACCAGTGAATCTGTTG+TGG | 0.610763 | 3.3:-64645378 | MS.gene35560:CDS |
| TCCACCACACTGCAAACAAG+AGG | 0.611195 | 3.3:-64642232 | MS.gene35560:intron |
| GTCTGAAGAAATGTCTGATG+CGG | 0.611515 | 3.3:-64641277 | MS.gene35560:CDS |
| CAAATGTGCTCTCACCTGGA+AGG | 0.615112 | 3.3:-64645400 | MS.gene35560:CDS |
| GATGGAACTATTCTTCACAC+TGG | 0.616053 | 3.3:-64646209 | MS.gene35560:CDS |
| AATATCTTGAGGACATGGAA+AGG | 0.619122 | 3.3:-64640147 | MS.gene35560:CDS |
| GATGATGGCATTGACACGGA+AGG | 0.627007 | 3.3:-64641498 | MS.gene35560:CDS |
| TGGAGAATACTTGTTCCTGA+AGG | 0.627983 | 3.3:-64643144 | MS.gene35560:CDS |
| TGCAGATGATGGCATTGACA+CGG | 0.630101 | 3.3:-64641502 | MS.gene35560:intron |
| GTTACCTCTTGTTTGCAGTG+TGG | 0.633512 | 3.3:+64642228 | None:intergenic |
| ATGTAGATTTGATGCAAACT+GGG | 0.634137 | 3.3:+64645304 | None:intergenic |
| GATTCATCATTTCCATCACA+CGG | 0.639799 | 3.3:+64643757 | None:intergenic |
| ATTTGAGATAGAACCAATCA+GGG | 0.643383 | 3.3:-64646279 | MS.gene35560:CDS |
| ATTCATCATTTCCATCACAC+GGG | 0.645095 | 3.3:+64643758 | None:intergenic |
| TTGATATTCCAGGACCAGCG+TGG | 0.651033 | 3.3:+64642296 | None:intergenic |
| AGGCGATTTATCTGATTCAG+GGG | 0.651319 | 3.3:-64641436 | MS.gene35560:CDS |
| ATTGTCTAGTGATGAAACAC+CGG | 0.652259 | 3.3:-64640122 | MS.gene35560:CDS |
| TGATATTCCAGGACCAGCGT+GGG | 0.657450 | 3.3:+64642297 | None:intergenic |
| GTGTATTGGAATCCAATGCT+GGG | 0.657667 | 3.3:+64646698 | None:intergenic |
| AAATCAATCAAAGCAAACAA+TGG | 0.658404 | 3.3:-64641369 | MS.gene35560:CDS |
| TTGGATCAACAATAGTTATG+GGG | 0.659409 | 3.3:-64643722 | MS.gene35560:CDS |
| ACATCTGGACATGCATATCG+TGG | 0.659861 | 3.3:-64643681 | MS.gene35560:CDS |
| ACATGATACCAGCATCAATG+AGG | 0.660800 | 3.3:+64648100 | None:intergenic |
| AGTTTGCATCAAATCTACAT+CGG | 0.660918 | 3.3:-64645301 | MS.gene35560:CDS |
| TGGAAGATTCTGTTCAACGT+AGG | 0.664297 | 3.3:-64648236 | MS.gene35560:CDS |
| TTGTCTGGCAAATCCCACGC+TGG | 0.665079 | 3.3:-64642310 | MS.gene35560:CDS |
| AAGATGGTGAGGAAGTACAG+TGG | 0.672062 | 3.3:-64642406 | MS.gene35560:CDS |
| GAAGCACTTGTTATAACACA+TGG | 0.674931 | 3.3:-64647714 | MS.gene35560:CDS |
| TGAGGAAGTACAGTGGTAAG+CGG | 0.677242 | 3.3:-64642399 | MS.gene35560:CDS |
| ATGCAGTTGAAATATAGTGA+TGG | 0.680617 | 3.3:-64642792 | MS.gene35560:intron |
| GCAAGATTTAAGGCAGCACG+TGG | 0.681321 | 3.3:+64644064 | None:intergenic |
| TGTACAGGAAGAAAATGTTG+CGG | 0.705564 | 3.3:+64643167 | None:intergenic |
| CAACTTTAAATCTGTCACGG+AGG | 0.723247 | 3.3:+64641175 | None:intergenic |
| ATAGGAAGAACACGTAATGG+CGG | 0.726743 | 3.3:+64648183 | None:intergenic |
| TCACACGGGACTCATTACCA+GGG | 0.727328 | 3.3:+64643772 | None:intergenic |
| TGGAACTATTCTTCACACTG+GGG | 0.745314 | 3.3:-64646207 | MS.gene35560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 64640111 | 64648259 | 64640111 | ID=MS.gene35560 |
| chr3.3 | mRNA | 64640111 | 64648259 | 64640111 | ID=MS.gene35560.t1;Parent=MS.gene35560 |
| chr3.3 | exon | 64648093 | 64648259 | 64648093 | ID=MS.gene35560.t1.exon1;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64648093 | 64648259 | 64648093 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64647683 | 64647806 | 64647683 | ID=MS.gene35560.t1.exon2;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64647683 | 64647806 | 64647683 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64646669 | 64646725 | 64646669 | ID=MS.gene35560.t1.exon3;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64646669 | 64646725 | 64646669 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64646199 | 64646390 | 64646199 | ID=MS.gene35560.t1.exon4;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64646199 | 64646390 | 64646199 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64646037 | 64646114 | 64646037 | ID=MS.gene35560.t1.exon5;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64646037 | 64646114 | 64646037 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64645256 | 64645438 | 64645256 | ID=MS.gene35560.t1.exon6;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64645256 | 64645438 | 64645256 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64645071 | 64645151 | 64645071 | ID=MS.gene35560.t1.exon7;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64645071 | 64645151 | 64645071 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64644192 | 64644257 | 64644192 | ID=MS.gene35560.t1.exon8;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64644192 | 64644257 | 64644192 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64644000 | 64644092 | 64644000 | ID=MS.gene35560.t1.exon9;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64644000 | 64644092 | 64644000 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64643674 | 64643799 | 64643674 | ID=MS.gene35560.t1.exon10;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64643674 | 64643799 | 64643674 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64643100 | 64643213 | 64643100 | ID=MS.gene35560.t1.exon11;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64643100 | 64643213 | 64643100 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64642897 | 64642992 | 64642897 | ID=MS.gene35560.t1.exon12;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64642897 | 64642992 | 64642897 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64642711 | 64642808 | 64642711 | ID=MS.gene35560.t1.exon13;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64642711 | 64642808 | 64642711 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64642233 | 64642633 | 64642233 | ID=MS.gene35560.t1.exon14;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64642233 | 64642633 | 64642233 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64641059 | 64641519 | 64641059 | ID=MS.gene35560.t1.exon15;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64641059 | 64641519 | 64641059 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| chr3.3 | exon | 64640111 | 64640206 | 64640111 | ID=MS.gene35560.t1.exon16;Parent=MS.gene35560.t1 |
| chr3.3 | CDS | 64640111 | 64640206 | 64640111 | ID=cds.MS.gene35560.t1;Parent=MS.gene35560.t1 |
| Gene Sequence |
| Protein sequence |
