AlfalfaGEDB | MS.gene35592

M. sativa cultivar XinJiangDaYe / MS.gene35592

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35592.t1	XP_013460895.1	96.8	220	7	0	1	220	1	220	3.30E-117	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35592.t1	A0A072UYT0	96.8	220	7	0	1	220	1	220	2.4e-117	431.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene35592	0.804362	2.24E-49	-1.69E-46
MS.gene049758	MS.gene35592	0.828758	7.52E-55	-1.69E-46
MS.gene050020	MS.gene35592	0.807851	4.13E-50	-1.69E-46
MS.gene050128	MS.gene35592	0.831981	1.23E-55	-1.69E-46
MS.gene050584	MS.gene35592	0.832658	8.34E-56	-1.69E-46
MS.gene050585	MS.gene35592	0.802352	5.84E-49	-1.69E-46
MS.gene050586	MS.gene35592	0.829405	5.24E-55	-1.69E-46
MS.gene050762	MS.gene35592	0.803851	2.86E-49	-1.69E-46
MS.gene050763	MS.gene35592	0.805464	1.32E-49	-1.69E-46
MS.gene051626	MS.gene35592	0.845249	4.57E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35592.t1	MTR_3g074450	96.818	220	7	0	1	220	1	220	1.07e-159	440
MS.gene35592.t1	MTR_5g063720	53.540	226	82	10	1	217	1	212	3.83e-58	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35592.t1	AT1G78170	34.804	204	111	8	18	211	21	212	2.00e-19	83.6
MS.gene35592.t1	AT1G22250	40.870	115	55	4	101	208	80	188	4.83e-16	73.9
MS.gene35592.t1	AT4G08910	40.000	120	45	3	102	203	86	196	1.16e-15	73.2

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Find 43 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTCGGGTGGTTTAAA+CGG	0.409779	3.3:+64233006	MS.gene35592:CDS
AACTTCAGTTCTTGGAGTCA+TGG	0.494815	3.3:-64232490	None:intergenic
AAGCAAGTTTAAGAAAGATT+CGG	0.375998	3.3:+64232993	MS.gene35592:CDS
AAGCTCATGTGATCAGAAGA+AGG	0.583375	3.3:-64232850	None:intergenic
AAGTTTAAGAAAGATTCGGG+TGG	0.705138	3.3:+64232997	MS.gene35592:CDS
AATAATTGGTGTCAATACCT+TGG	0.524933	3.3:+64232651	MS.gene35592:CDS
AATTTGCAGTTAGGACAAGC+AGG	0.557243	3.3:-64233129	None:intergenic
ACTTGACATGTGAATCACAA+AGG	0.656443	3.3:+64232887	MS.gene35592:CDS
AGCAAGTTTAAGAAAGATTC+GGG	0.373167	3.3:+64232994	MS.gene35592:CDS
AGTGATCAGAAGAAGAATTC+TGG	0.461088	3.3:+64232922	MS.gene35592:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAGTTTAAGAAAGATTC+GGG	+	chr3.3:64232994-64233013	MS.gene35592:CDS	30.0%
CCAATTATTTGAAGGAAACA+TGG	-	chr3.3:64232640-64232659	None:intergenic	30.0%
CCATGTTTCCTTCAAATAAT+TGG	+	chr3.3:64232637-64232656	MS.gene35592:CDS	30.0%
AAAGATTCGGGTGGTTTAAA+CGG	+	chr3.3:64233006-64233025	MS.gene35592:CDS	35.0%
AAGTTTAAGAAAGATTCGGG+TGG	+	chr3.3:64232997-64233016	MS.gene35592:CDS	35.0%
ACTTGACATGTGAATCACAA+AGG	+	chr3.3:64232887-64232906	MS.gene35592:CDS	35.0%
AGTGATCAGAAGAAGAATTC+TGG	+	chr3.3:64232922-64232941	MS.gene35592:CDS	35.0%
ATCATGTTCTGTCAAACTCT+TGG	-	chr3.3:64232956-64232975	None:intergenic	35.0%
CAACATATACCTGAATACCA+AGG	-	chr3.3:64232671-64232690	None:intergenic	35.0%
CATCTCTTTGTAATCTCCTT+CGG	-	chr3.3:64233055-64233074	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	64232465	64233221	64232465	ID=MS.gene35592
chr3.3	mRNA	64232465	64233221	64232465	ID=MS.gene35592.t1;Parent=MS.gene35592
chr3.3	exon	64232465	64232680	64232465	ID=MS.gene35592.t1.exon1;Parent=MS.gene35592.t1
chr3.3	CDS	64232465	64232680	64232465	ID=cds.MS.gene35592.t1;Parent=MS.gene35592.t1
chr3.3	exon	64232775	64233221	64232775	ID=MS.gene35592.t1.exon2;Parent=MS.gene35592.t1
chr3.3	CDS	64232775	64233221	64232775	ID=cds.MS.gene35592.t1;Parent=MS.gene35592.t1

Gene Sequence

>MS.gene35592

ATGGTATCCTTATTCAAAGCACTGTCCATGACTCCAAGAACTGAAGTTAAAGAAGAATTTGAAGCATCAAAGAAAAGAAAGTTTGAGGAACCATTTACTGAAGAATTCTTCAAGGATCAAACAAATTTAGAGAAAAGGAAATCCACCTTTGATACAAAGCCTCCCCTAGAGACCATGTTTCCTTCAAATAATTGGTGTCAATACCTTGGTATTCAGGTATATGTTGTATAGTATATATATTGTCAAACTTTATACAAAATTCCAATGATATCATATCTTATGATCAATCTTTAATTTTTTTTATGTGCAGTCAGGGAAGATACAGTTGTGTAACACAAGACCCGATCGGACAACGATAGAAACCTCGAAACGAAGCCTGCGACAACCTTCTTCTGATCACATGAGCTTAGACCTTGAGCTAAACTTGACATGTGAATCACAAAGGAAAAACAAAAACAGTGATCAGAAGAAGAATTCTGGTAATTCTCCCAAGAGTTTGACAGAACATGATGATCTTTGTATTGAATCAAGCAAGTTTAAGAAAGATTCGGGTGGTTTAAACGGTTCTCAGTCGTGGTTGTCGACAACCGAAGGAGATTACAAAGAGATGGTTGCAACAGTTTGCATGCAGTGTCACATGTTGGTAATGATATGCAAGTCATCTCCTGCTTGTCCTAACTGCAAATTCATGCACTCACCAGACCAGAACCCTTCAAAATTCTTGAAGAGCAGATGCAGCTTCTTCTGCTCTAGTTAG

Protein sequence

>MS.gene35592.t1

MVSLFKALSMTPRTEVKEEFEASKKRKFEEPFTEEFFKDQTNLEKRKSTFDTKPPLETMFPSNNWCQYLGIQSGKIQLCNTRPDRTTIETSKRSLRQPSSDHMSLDLELNLTCESQRKNKNSDQKKNSGNSPKSLTEHDDLCIESSKFKKDSGGLNGSQSWLSTTEGDYKEMVATVCMQCHMLVMICKSSPACPNCKFMHSPDQNPSKFLKSRCSFFCSS