Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37051.t1 | XP_003626895.2 | 89.4 | 369 | 17 | 2 | 1 | 360 | 1 | 356 | 5.30E-173 | 617.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37051.t1 | Q9FPT1 | 39.1 | 128 | 73 | 3 | 27 | 153 | 56 | 179 | 2.3e-20 | 101.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37051.t1 | G7LEE7 | 89.4 | 369 | 17 | 2 | 1 | 360 | 1 | 356 | 3.8e-173 | 617.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038336 | MS.gene37051 | PPI |
MS.gene37051 | MS.gene038327 | PPI |
MS.gene038333 | MS.gene37051 | PPI |
MS.gene37051 | MS.gene057070 | PPI |
MS.gene37051 | MS.gene030045 | PPI |
MS.gene37051 | MS.gene017100 | PPI |
MS.gene37051 | MS.gene057090 | PPI |
MS.gene038330 | MS.gene37051 | PPI |
MS.gene37051 | MS.gene030026 | PPI |
MS.gene37051 | MS.gene038342 | PPI |
MS.gene37051 | MS.gene038326 | PPI |
MS.gene37051 | MS.gene017083 | PPI |
MS.gene37051 | MS.gene038328 | PPI |
MS.gene37051 | MS.gene057065 | PPI |
MS.gene017102 | MS.gene37051 | PPI |
MS.gene37051 | MS.gene030034 | PPI |
MS.gene37051 | MS.gene017102 | PPI |
MS.gene030033 | MS.gene37051 | PPI |
MS.gene37051 | MS.gene038324 | PPI |
MS.gene37051 | MS.gene057066 | PPI |
MS.gene37051 | MS.gene030029 | PPI |
MS.gene37051 | MS.gene030042 | PPI |
MS.gene37051 | MS.gene057069 | PPI |
MS.gene37051 | MS.gene017101 | PPI |
MS.gene37051 | MS.gene017099 | PPI |
MS.gene37051 | MS.gene017115 | PPI |
MS.gene37051 | MS.gene030037 | PPI |
MS.gene37051 | MS.gene038300 | PPI |
MS.gene038323 | MS.gene37051 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37051.t1 | MTR_8g011730 | 88.889 | 369 | 19 | 2 | 1 | 360 | 1 | 356 | 0.0 | 668 |
MS.gene37051.t1 | MTR_7g107200 | 34.097 | 393 | 173 | 9 | 25 | 358 | 11 | 376 | 2.24e-63 | 206 |
MS.gene37051.t1 | MTR_1g042160 | 32.754 | 345 | 172 | 8 | 25 | 356 | 11 | 308 | 1.07e-49 | 169 |
MS.gene37051.t1 | MTR_7g107160 | 32.676 | 355 | 179 | 10 | 25 | 357 | 128 | 444 | 1.06e-47 | 167 |
MS.gene37051.t1 | MTR_7g107170 | 40.351 | 171 | 88 | 2 | 201 | 359 | 98 | 266 | 2.58e-34 | 127 |
MS.gene37051.t1 | MTR_8g011750 | 50.000 | 160 | 31 | 3 | 212 | 359 | 61 | 183 | 9.79e-30 | 113 |
MS.gene37051.t1 | MTR_2g034780 | 43.939 | 132 | 69 | 2 | 214 | 345 | 117 | 243 | 4.26e-28 | 111 |
MS.gene37051.t1 | MTR_1g041240 | 35.948 | 153 | 91 | 3 | 1 | 153 | 34 | 179 | 6.15e-24 | 103 |
MS.gene37051.t1 | MTR_1g041240 | 35.948 | 153 | 91 | 3 | 1 | 153 | 36 | 181 | 6.76e-24 | 103 |
MS.gene37051.t1 | MTR_3g079840 | 36.424 | 151 | 88 | 5 | 5 | 154 | 38 | 181 | 1.49e-23 | 102 |
MS.gene37051.t1 | MTR_3g079840 | 36.424 | 151 | 88 | 5 | 5 | 154 | 37 | 180 | 1.53e-23 | 102 |
MS.gene37051.t1 | MTR_1g041240 | 37.063 | 143 | 83 | 3 | 11 | 153 | 45 | 180 | 1.86e-23 | 102 |
MS.gene37051.t1 | MTR_5g086700 | 36.424 | 151 | 86 | 5 | 5 | 154 | 44 | 185 | 1.74e-22 | 99.8 |
MS.gene37051.t1 | MTR_5g086700 | 36.424 | 151 | 86 | 5 | 5 | 154 | 44 | 185 | 1.77e-22 | 99.8 |
MS.gene37051.t1 | MTR_5g091450 | 30.357 | 168 | 100 | 6 | 4 | 164 | 17 | 174 | 2.16e-20 | 93.2 |
MS.gene37051.t1 | MTR_5g091180 | 28.736 | 174 | 110 | 5 | 6 | 171 | 28 | 195 | 6.56e-17 | 82.4 |
MS.gene37051.t1 | MTR_5g091550 | 28.824 | 170 | 106 | 6 | 14 | 172 | 3 | 168 | 1.01e-13 | 72.4 |
MS.gene37051.t1 | MTR_5g091550 | 28.472 | 144 | 95 | 4 | 14 | 153 | 3 | 142 | 1.73e-13 | 71.6 |
MS.gene37051.t1 | MTR_8g006190 | 29.915 | 117 | 79 | 2 | 44 | 157 | 10 | 126 | 1.24e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37051.t1 | AT5G06600 | 38.194 | 144 | 81 | 5 | 11 | 153 | 43 | 179 | 8.59e-24 | 103 |
MS.gene37051.t1 | AT5G06600 | 38.194 | 144 | 81 | 5 | 11 | 153 | 42 | 178 | 9.00e-24 | 103 |
MS.gene37051.t1 | AT5G06600 | 38.194 | 144 | 81 | 5 | 11 | 153 | 43 | 179 | 9.56e-24 | 103 |
MS.gene37051.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 54 | 177 | 1.11e-22 | 100 |
MS.gene37051.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 54 | 177 | 1.11e-22 | 100 |
MS.gene37051.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 55 | 178 | 1.14e-22 | 100 |
MS.gene37051.t1 | AT3G11910 | 39.844 | 128 | 72 | 3 | 27 | 153 | 55 | 178 | 1.14e-22 | 100 |
MS.gene37051.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.50e-14 | 74.3 |
MS.gene37051.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.50e-14 | 74.3 |
MS.gene37051.t1 | AT3G58270 | 28.934 | 197 | 114 | 6 | 27 | 222 | 8 | 179 | 1.50e-14 | 74.3 |
MS.gene37051.t1 | AT3G58260 | 22.796 | 329 | 200 | 11 | 28 | 347 | 9 | 292 | 4.42e-14 | 72.8 |
MS.gene37051.t1 | AT3G58410 | 34.109 | 129 | 77 | 4 | 26 | 153 | 7 | 128 | 3.55e-13 | 70.1 |
MS.gene37051.t1 | AT3G58200 | 33.333 | 117 | 74 | 2 | 27 | 142 | 8 | 121 | 1.91e-12 | 67.8 |
MS.gene37051.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.32e-11 | 65.1 |
MS.gene37051.t1 | AT3G58340 | 31.783 | 129 | 83 | 3 | 26 | 153 | 7 | 131 | 1.78e-11 | 65.1 |
MS.gene37051.t1 | AT3G58210 | 31.250 | 128 | 85 | 2 | 27 | 153 | 8 | 133 | 2.72e-11 | 64.3 |
Find 70 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAATTGCAGATTCAAAATA+TGG | 0.175455 | 8.2:+80252696 | None:intergenic |
GTCTCAATTTGGTCGATTTC+AGG | 0.175751 | 8.2:-80253040 | MS.gene37051:CDS |
CAAGTTCTTCCCATAAAATT+TGG | 0.190981 | 8.2:+80252751 | None:intergenic |
TGTCAATTTGTGTCTCAATT+TGG | 0.326986 | 8.2:-80253051 | MS.gene37051:CDS |
GAGTTGTTCTCGTTCCCTTT+TGG | 0.329267 | 8.2:+80253699 | None:intergenic |
AGAATTTGTAGAGAGGGATT+TGG | 0.337842 | 8.2:-80252562 | MS.gene37051:CDS |
TCATGGCATCCCTCACTCTT+AGG | 0.346575 | 8.2:-80252966 | MS.gene37051:CDS |
TTGGTCGATTTCAGGGGATT+AGG | 0.362163 | 8.2:-80253032 | MS.gene37051:CDS |
TGTCGACAAGTTCATACATT+TGG | 0.371497 | 8.2:-80253222 | MS.gene37051:CDS |
CTTGTCATTATCAATTCTTT+CGG | 0.397618 | 8.2:-80253670 | MS.gene37051:CDS |
GAGTATGCTTTCTCTTCCTC+TGG | 0.401027 | 8.2:+80252874 | None:intergenic |
TCAATGCAAGTAATTATTGC+TGG | 0.402960 | 8.2:-80253247 | MS.gene37051:CDS |
GAATGGGCTTTCACAGCATT+AGG | 0.408262 | 8.2:-80252840 | MS.gene37051:CDS |
TACTCGTAGGTTTAGAGAAT+GGG | 0.411103 | 8.2:-80252856 | MS.gene37051:CDS |
TAACTTTGTTCCACTGATAG+AGG | 0.432584 | 8.2:-80252931 | MS.gene37051:CDS |
TCTCAATTTGGTCGATTTCA+GGG | 0.439850 | 8.2:-80253039 | MS.gene37051:CDS |
GTCTCTATCAGAAACTGAAC+AGG | 0.444956 | 8.2:-80253273 | MS.gene37051:intron |
TGCTAGAGGAAGCATGTTCA+TGG | 0.445186 | 8.2:-80252983 | MS.gene37051:CDS |
CGGATTGTTATGAATCCAAA+AGG | 0.446814 | 8.2:-80253714 | MS.gene37051:CDS |
GACAATTGTGAGCAAGGCAT+TGG | 0.453163 | 8.2:+80253572 | None:intergenic |
TGATAGAGGAAGCATGTTCA+TGG | 0.466066 | 8.2:-80252917 | MS.gene37051:CDS |
TTCACAATAAACGCCTTCCA+TGG | 0.468726 | 8.2:+80253185 | None:intergenic |
ATTATTTCTGTCAGTGAACA+TGG | 0.487693 | 8.2:-80253137 | MS.gene37051:CDS |
CTCAATTTGGTCGATTTCAG+GGG | 0.491954 | 8.2:-80253038 | MS.gene37051:CDS |
AAGATATGTAAATCTTGAGT+TGG | 0.500018 | 8.2:-80253610 | MS.gene37051:CDS |
CAATCGTCCATGGGGACCAT+GGG | 0.500110 | 8.2:+80253965 | None:intergenic |
ACACACGAGGGCACTTGCGC+TGG | 0.507100 | 8.2:+80253071 | None:intergenic |
AGAGATATGCAAATGTGAAA+AGG | 0.508744 | 8.2:-80252656 | MS.gene37051:CDS |
ATACTCGTAGGTTTAGAGAA+TGG | 0.509105 | 8.2:-80252857 | MS.gene37051:CDS |
GCTTTACCCTCAATCGTCCA+TGG | 0.517777 | 8.2:+80253955 | None:intergenic |
TGGTCCCCATGGACGATTGA+GGG | 0.518534 | 8.2:-80253961 | MS.gene37051:CDS |
TAAACGCCTTCCATGGGTTG+TGG | 0.519110 | 8.2:+80253192 | None:intergenic |
TGGGAAGAACTTGAGACAGT+TGG | 0.519283 | 8.2:-80252741 | MS.gene37051:CDS |
ATACTTGTATTATTAAAGCT+CGG | 0.520080 | 8.2:-80253160 | MS.gene37051:CDS |
TCAATCGTCCATGGGGACCA+TGG | 0.527312 | 8.2:+80253964 | None:intergenic |
TGATCAAGAAGTTAGCAAGA+TGG | 0.527799 | 8.2:-80253099 | MS.gene37051:CDS |
AGGGATTTGGATGCTAAACT+AGG | 0.527986 | 8.2:-80252549 | MS.gene37051:CDS |
TGAATTGCTCAATCGTCCAC+GGG | 0.529664 | 8.2:+80253917 | None:intergenic |
TTGGATGCTAAACTAGGCTA+TGG | 0.541199 | 8.2:-80252543 | MS.gene37051:CDS |
ACCTTTGACAATTGTGAGCA+AGG | 0.542077 | 8.2:+80253566 | None:intergenic |
GTCTACTTTGCCTAAGAGTG+AGG | 0.544093 | 8.2:+80252956 | None:intergenic |
CTTTACCCTCAATCGTCCAT+GGG | 0.546895 | 8.2:+80253956 | None:intergenic |
TCACAATAAACGCCTTCCAT+GGG | 0.562456 | 8.2:+80253186 | None:intergenic |
AAAATTTGTTCCGCTGCTAG+AGG | 0.575127 | 8.2:-80252997 | MS.gene37051:CDS |
GTGAATTGCTCAATCGTCCA+CGG | 0.575431 | 8.2:+80253916 | None:intergenic |
ATGTGATTCTCAGATGTACT+CGG | 0.577748 | 8.2:-80253869 | MS.gene37051:CDS |
ATATATCCCCATGGTCCCCA+TGG | 0.581426 | 8.2:-80253972 | MS.gene37051:CDS |
TCTACTTTGCCTAAGAGTGA+GGG | 0.587618 | 8.2:+80252957 | None:intergenic |
ATGCAAATGTGAAAAGGCTG+AGG | 0.588552 | 8.2:-80252650 | MS.gene37051:CDS |
AAAGGGAACGAGAACAACTC+TGG | 0.589691 | 8.2:-80253696 | MS.gene37051:CDS |
ATGGTCCCCATGGACGATTG+AGG | 0.589721 | 8.2:-80253962 | MS.gene37051:CDS |
TGGATGAACTCCACAACCCA+TGG | 0.592095 | 8.2:-80253202 | MS.gene37051:CDS |
GGAAGAGAAAGCATACTCGT+AGG | 0.598915 | 8.2:-80252869 | MS.gene37051:CDS |
TTCAAAATATGGCTTCAACC+AGG | 0.606260 | 8.2:+80252707 | None:intergenic |
GCCTTGCTCACAATTGTCAA+AGG | 0.607799 | 8.2:-80253567 | MS.gene37051:intron |
GAACATGCTTCCTCTATCAG+TGG | 0.613098 | 8.2:+80252921 | None:intergenic |
TGAACTCCACAACCCATGGA+AGG | 0.624854 | 8.2:-80253198 | MS.gene37051:CDS |
GGATTGTTATGAATCCAAAA+GGG | 0.625720 | 8.2:-80253713 | MS.gene37051:CDS |
TTATTTCTGTCAGTGAACAT+GGG | 0.642647 | 8.2:-80253136 | MS.gene37051:CDS |
GAACATGCTTCCTCTAGCAG+CGG | 0.657845 | 8.2:+80252987 | None:intergenic |
AAGGCTGAGGAAGACTGTAG+AGG | 0.657859 | 8.2:-80252637 | MS.gene37051:CDS |
GCTCACATGTTGACAACCAG+AGG | 0.663472 | 8.2:-80252890 | MS.gene37051:CDS |
AGATGGAGAATATATCCCCA+TGG | 0.669547 | 8.2:-80253981 | MS.gene37051:CDS |
GGACGATTGAGCAATTCACA+TGG | 0.676776 | 8.2:-80253912 | MS.gene37051:CDS |
AATCGTCCATGGGGACCATG+GGG | 0.696115 | 8.2:+80253966 | None:intergenic |
TTTACCCTCAATCGTCCATG+GGG | 0.712378 | 8.2:+80253957 | None:intergenic |
AGACACAAATTGACACACGA+GGG | 0.720376 | 8.2:+80253059 | None:intergenic |
GAGACACAAATTGACACACG+AGG | 0.721625 | 8.2:+80253058 | None:intergenic |
GAATTGCTCAATCGTCCACG+GGG | 0.742076 | 8.2:+80253918 | None:intergenic |
CATTTGAGAATATATCCCCG+TGG | 0.771145 | 8.2:-80253933 | MS.gene37051:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAGAACAACTTATATAAA+GGG | + | chr8.2:80253201-80253220 | None:intergenic | 15.0% |
!!! | AAAAAAAAGCATAAAAAACA+TGG | + | chr8.2:80252751-80252770 | None:intergenic | 15.0% |
!!! | ACAATTTCTTTTACATTTTT+TGG | - | chr8.2:80252982-80253001 | MS.gene37051:CDS | 15.0% |
!! | ATACTTGTATTATTAAAGCT+CGG | - | chr8.2:80253352-80253371 | MS.gene37051:intron | 20.0% |
!! | GTTAAGAACAACTTATATAA+AGG | + | chr8.2:80253202-80253221 | None:intergenic | 20.0% |
!! | TAAGAACAACTTATATAAAG+GGG | + | chr8.2:80253200-80253219 | None:intergenic | 20.0% |
!!! | ACATTTTCTAAACACTAAAA+GGG | - | chr8.2:80253704-80253723 | MS.gene37051:CDS | 20.0% |
!!! | AGTCTTGAAATTTTATTACT+TGG | - | chr8.2:80253093-80253112 | MS.gene37051:CDS | 20.0% |
!!! | CTTTTACATTTTTTGGTATA+AGG | - | chr8.2:80252989-80253008 | MS.gene37051:CDS | 20.0% |
!!! | TAATCATCTCCAAATTTTAT+GGG | - | chr8.2:80253752-80253771 | MS.gene37051:intron | 20.0% |
!!! | TACATTTTCTAAACACTAAA+AGG | - | chr8.2:80253703-80253722 | MS.gene37051:CDS | 20.0% |
!!! | TTATTGATTTTTCTAAAGAC+TGG | - | chr8.2:80252877-80252896 | MS.gene37051:CDS | 20.0% |
! | AAGATATGTAAATCTTGAGT+TGG | - | chr8.2:80252902-80252921 | MS.gene37051:CDS | 25.0% |
! | AGAAAAAGAATTTGTAGAGA+GGG | - | chr8.2:80253944-80253963 | MS.gene37051:CDS | 25.0% |
! | CTTGTCATTATCAATTCTTT+CGG | - | chr8.2:80252842-80252861 | MS.gene37051:CDS | 25.0% |
! | GATATAATTAACAGATGTCA+TGG | + | chr8.2:80253017-80253036 | None:intergenic | 25.0% |
!! | GTAATCATCTCCAAATTTTA+TGG | - | chr8.2:80253751-80253770 | MS.gene37051:intron | 25.0% |
!!! | ATGAACTTTCCTTTATTTTG+TGG | - | chr8.2:80253129-80253148 | MS.gene37051:CDS | 25.0% |
AGAGATATGCAAATGTGAAA+AGG | - | chr8.2:80253856-80253875 | MS.gene37051:CDS | 30.0% | |
CAAGTTCTTCCCATAAAATT+TGG | + | chr8.2:80253764-80253783 | None:intergenic | 30.0% | |
CAGAAAAAGAATTTGTAGAG+AGG | - | chr8.2:80253943-80253962 | MS.gene37051:CDS | 30.0% | |
CCAATTGCAGATTCAAAATA+TGG | + | chr8.2:80253819-80253838 | None:intergenic | 30.0% | |
GGATTGTTATGAATCCAAAA+GGG | - | chr8.2:80252799-80252818 | MS.gene37051:CDS | 30.0% | |
TCAATGCAAGTAATTATTGC+TGG | - | chr8.2:80253265-80253284 | MS.gene37051:CDS | 30.0% | |
TGTCAATTTGTGTCTCAATT+TGG | - | chr8.2:80253461-80253480 | MS.gene37051:intron | 30.0% | |
!! | ATTATTTCTGTCAGTGAACA+TGG | - | chr8.2:80253375-80253394 | MS.gene37051:intron | 30.0% |
!! | CCATATTTTGAATCTGCAAT+TGG | - | chr8.2:80253816-80253835 | MS.gene37051:intron | 30.0% |
!! | TTATTTCTGTCAGTGAACAT+GGG | - | chr8.2:80253376-80253395 | MS.gene37051:intron | 30.0% |
!!! | TGTTTTCGATGTTGTTTTTC+AGG | - | chr8.2:80252775-80252794 | MS.gene37051:CDS | 30.0% |
AGAATTTGTAGAGAGGGATT+TGG | - | chr8.2:80253950-80253969 | MS.gene37051:CDS | 35.0% | |
ATACTCGTAGGTTTAGAGAA+TGG | - | chr8.2:80253655-80253674 | MS.gene37051:CDS | 35.0% | |
ATGTGATTCTCAGATGTACT+CGG | - | chr8.2:80252643-80252662 | MS.gene37051:CDS | 35.0% | |
CGGATTGTTATGAATCCAAA+AGG | - | chr8.2:80252798-80252817 | MS.gene37051:CDS | 35.0% | |
TAACTTTGTTCCACTGATAG+AGG | - | chr8.2:80253581-80253600 | MS.gene37051:CDS | 35.0% | |
TACTCGTAGGTTTAGAGAAT+GGG | - | chr8.2:80253656-80253675 | MS.gene37051:CDS | 35.0% | |
TGATCAAGAAGTTAGCAAGA+TGG | - | chr8.2:80253413-80253432 | MS.gene37051:intron | 35.0% | |
TGCAACATCATATGAAGACT+TGG | - | chr8.2:80253059-80253078 | MS.gene37051:CDS | 35.0% | |
TGTCGACAAGTTCATACATT+TGG | - | chr8.2:80253290-80253309 | MS.gene37051:intron | 35.0% | |
TTCAAAATATGGCTTCAACC+AGG | + | chr8.2:80253808-80253827 | None:intergenic | 35.0% | |
! | TCTCAATTTGGTCGATTTCA+GGG | - | chr8.2:80253473-80253492 | MS.gene37051:intron | 35.0% |
!!! | CAGTTGGTTTTGATTTATCC+TGG | - | chr8.2:80253787-80253806 | MS.gene37051:intron | 35.0% |
!!! | TTTCGATGTTGTTTTTCAGG+CGG | - | chr8.2:80252778-80252797 | MS.gene37051:CDS | 35.0% |
ACCTTTGACAATTGTGAGCA+AGG | + | chr8.2:80252949-80252968 | None:intergenic | 40.0% | |
AGACACAAATTGACACACGA+GGG | + | chr8.2:80253456-80253475 | None:intergenic | 40.0% | |
AGGGATTTGGATGCTAAACT+AGG | - | chr8.2:80253963-80253982 | MS.gene37051:CDS | 40.0% | |
ATGCAAATGTGAAAAGGCTG+AGG | - | chr8.2:80253862-80253881 | MS.gene37051:CDS | 40.0% | |
CACGCTCAACCACAAAATAA+AGG | + | chr8.2:80253141-80253160 | None:intergenic | 40.0% | |
CATTTGAGAATATATCCCCG+TGG | - | chr8.2:80252579-80252598 | MS.gene37051:CDS | 40.0% | |
CGTATGTGTATGCAGTAAAC+TGG | + | chr8.2:80252716-80252735 | None:intergenic | 40.0% | |
GAGACATATAGTGTCGTGTT+TGG | + | chr8.2:80253224-80253243 | None:intergenic | 40.0% | |
GTCTCTATCAGAAACTGAAC+AGG | - | chr8.2:80253239-80253258 | MS.gene37051:CDS | 40.0% | |
TCACAATAAACGCCTTCCAT+GGG | + | chr8.2:80253329-80253348 | None:intergenic | 40.0% | |
TCTACTTTGCCTAAGAGTGA+GGG | + | chr8.2:80253558-80253577 | None:intergenic | 40.0% | |
TTCACAATAAACGCCTTCCA+TGG | + | chr8.2:80253330-80253349 | None:intergenic | 40.0% | |
TTGGATGCTAAACTAGGCTA+TGG | - | chr8.2:80253969-80253988 | MS.gene37051:CDS | 40.0% | |
! | AAAATTTGTTCCGCTGCTAG+AGG | - | chr8.2:80253515-80253534 | MS.gene37051:intron | 40.0% |
! | CTCAATTTGGTCGATTTCAG+GGG | - | chr8.2:80253474-80253493 | MS.gene37051:intron | 40.0% |
! | GTCTCAATTTGGTCGATTTC+AGG | - | chr8.2:80253472-80253491 | MS.gene37051:intron | 40.0% |
! | TGATAGAGGAAGCATGTTCA+TGG | - | chr8.2:80253595-80253614 | MS.gene37051:CDS | 40.0% |
! | TTTTCATGAGTGGCTATCCA+TGG | - | chr8.2:80252672-80252691 | MS.gene37051:CDS | 40.0% |
!!! | TCGGAGAGTTTTTTCATGAG+TGG | - | chr8.2:80252662-80252681 | MS.gene37051:CDS | 40.0% |
AAAGGGAACGAGAACAACTC+TGG | - | chr8.2:80252816-80252835 | MS.gene37051:CDS | 45.0% | |
CTTTACCCTCAATCGTCCAT+GGG | + | chr8.2:80252559-80252578 | None:intergenic | 45.0% | |
GAACATGCTTCCTCTATCAG+TGG | + | chr8.2:80253594-80253613 | None:intergenic | 45.0% | |
GACAATTGTGAGCAAGGCAT+TGG | + | chr8.2:80252943-80252962 | None:intergenic | 45.0% | |
GAGACACAAATTGACACACG+AGG | + | chr8.2:80253457-80253476 | None:intergenic | 45.0% | |
GAGTATGCTTTCTCTTCCTC+TGG | + | chr8.2:80253641-80253660 | None:intergenic | 45.0% | |
GCCTTGCTCACAATTGTCAA+AGG | - | chr8.2:80252945-80252964 | MS.gene37051:CDS | 45.0% | |
GGACGATTGAGCAATTCACA+TGG | - | chr8.2:80252600-80252619 | MS.gene37051:CDS | 45.0% | |
GTCTACTTTGCCTAAGAGTG+AGG | + | chr8.2:80253559-80253578 | None:intergenic | 45.0% | |
GTGAATTGCTCAATCGTCCA+CGG | + | chr8.2:80252599-80252618 | None:intergenic | 45.0% | |
TGAATTGCTCAATCGTCCAC+GGG | + | chr8.2:80252598-80252617 | None:intergenic | 45.0% | |
TGGGAAGAACTTGAGACAGT+TGG | - | chr8.2:80253771-80253790 | MS.gene37051:intron | 45.0% | |
TTTACCCTCAATCGTCCATG+GGG | + | chr8.2:80252558-80252577 | None:intergenic | 45.0% | |
! | GAATGGGCTTTCACAGCATT+AGG | - | chr8.2:80253672-80253691 | MS.gene37051:CDS | 45.0% |
! | GAGTTGTTCTCGTTCCCTTT+TGG | + | chr8.2:80252816-80252835 | None:intergenic | 45.0% |
! | GGAAGAGAAAGCATACTCGT+AGG | - | chr8.2:80253643-80253662 | MS.gene37051:CDS | 45.0% |
! | TGCTAGAGGAAGCATGTTCA+TGG | - | chr8.2:80253529-80253548 | MS.gene37051:intron | 45.0% |
! | TTGGTCGATTTCAGGGGATT+AGG | - | chr8.2:80253480-80253499 | MS.gene37051:intron | 45.0% |
AAGGCTGAGGAAGACTGTAG+AGG | - | chr8.2:80253875-80253894 | MS.gene37051:CDS | 50.0% | |
ATATATCCCCATGGTCCCCA+TGG | - | chr8.2:80252540-80252559 | MS.gene37051:CDS | 50.0% | |
ATTCACTCGAGCACCAACCA+TGG | + | chr8.2:80252692-80252711 | None:intergenic | 50.0% | |
CATGAGTGGCTATCCATGGT+TGG | - | chr8.2:80252676-80252695 | MS.gene37051:CDS | 50.0% | |
GAACATGCTTCCTCTAGCAG+CGG | + | chr8.2:80253528-80253547 | None:intergenic | 50.0% | |
GAATTGCTCAATCGTCCACG+GGG | + | chr8.2:80252597-80252616 | None:intergenic | 50.0% | |
GCTCACATGTTGACAACCAG+AGG | - | chr8.2:80253622-80253641 | MS.gene37051:CDS | 50.0% | |
GCTTTACCCTCAATCGTCCA+TGG | + | chr8.2:80252560-80252579 | None:intergenic | 50.0% | |
TCATGGCATCCCTCACTCTT+AGG | - | chr8.2:80253546-80253565 | MS.gene37051:intron | 50.0% | |
TGAACTCCACAACCCATGGA+AGG | - | chr8.2:80253314-80253333 | MS.gene37051:intron | 50.0% | |
TGGATGAACTCCACAACCCA+TGG | - | chr8.2:80253310-80253329 | MS.gene37051:intron | 50.0% | |
! | TAAACGCCTTCCATGGGTTG+TGG | + | chr8.2:80253323-80253342 | None:intergenic | 50.0% |
AATCGTCCATGGGGACCATG+GGG | + | chr8.2:80252549-80252568 | None:intergenic | 55.0% | |
ATGGTCCCCATGGACGATTG+AGG | - | chr8.2:80252550-80252569 | MS.gene37051:CDS | 55.0% | |
CAATCGTCCATGGGGACCAT+GGG | + | chr8.2:80252550-80252569 | None:intergenic | 55.0% | |
TCAATCGTCCATGGGGACCA+TGG | + | chr8.2:80252551-80252570 | None:intergenic | 55.0% | |
TGGTCCCCATGGACGATTGA+GGG | - | chr8.2:80252551-80252570 | MS.gene37051:CDS | 55.0% | |
!! | ACACACGAGGGCACTTGCGC+TGG | + | chr8.2:80253444-80253463 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 80252533 | 80254001 | 80252533 | ID=MS.gene37051 |
chr8.2 | mRNA | 80252533 | 80254001 | 80252533 | ID=MS.gene37051.t1;Parent=MS.gene37051 |
chr8.2 | exon | 80253841 | 80254001 | 80253841 | ID=MS.gene37051.t1.exon1;Parent=MS.gene37051.t1 |
chr8.2 | CDS | 80253841 | 80254001 | 80253841 | ID=cds.MS.gene37051.t1;Parent=MS.gene37051.t1 |
chr8.2 | exon | 80253568 | 80253737 | 80253568 | ID=MS.gene37051.t1.exon2;Parent=MS.gene37051.t1 |
chr8.2 | CDS | 80253568 | 80253737 | 80253568 | ID=cds.MS.gene37051.t1;Parent=MS.gene37051.t1 |
chr8.2 | exon | 80252533 | 80253284 | 80252533 | ID=MS.gene37051.t1.exon3;Parent=MS.gene37051.t1 |
chr8.2 | CDS | 80252533 | 80253284 | 80252533 | ID=cds.MS.gene37051.t1;Parent=MS.gene37051.t1 |
Gene Sequence |
Protein sequence |