Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37052.t1 | XP_003626895.2 | 66.5 | 349 | 90 | 3 | 15 | 337 | 8 | 355 | 4.20E-124 | 454.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37052.t1 | Q9FPT1 | 40.7 | 145 | 81 | 3 | 19 | 162 | 54 | 194 | 3.6e-23 | 110.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37052.t1 | G7LEE7 | 66.5 | 349 | 90 | 3 | 15 | 337 | 8 | 355 | 3.1e-124 | 454.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37052.t1 | MTR_8g011730 | 66.476 | 349 | 90 | 3 | 15 | 337 | 8 | 355 | 5.37e-162 | 456 |
MS.gene37052.t1 | MTR_7g107200 | 38.520 | 392 | 173 | 11 | 1 | 338 | 1 | 378 | 2.92e-75 | 236 |
MS.gene37052.t1 | MTR_1g042160 | 34.000 | 350 | 173 | 7 | 1 | 334 | 1 | 308 | 2.37e-54 | 180 |
MS.gene37052.t1 | MTR_7g107160 | 33.526 | 346 | 176 | 8 | 20 | 338 | 129 | 447 | 1.82e-48 | 169 |
MS.gene37052.t1 | MTR_8g011750 | 62.687 | 134 | 13 | 1 | 205 | 338 | 88 | 184 | 1.15e-39 | 138 |
MS.gene37052.t1 | MTR_7g107170 | 40.230 | 174 | 82 | 3 | 173 | 334 | 100 | 263 | 1.78e-34 | 127 |
MS.gene37052.t1 | MTR_2g034780 | 38.889 | 162 | 89 | 4 | 161 | 322 | 91 | 242 | 1.04e-30 | 117 |
MS.gene37052.t1 | MTR_1g041240 | 40.157 | 127 | 72 | 2 | 21 | 147 | 59 | 181 | 6.00e-25 | 106 |
MS.gene37052.t1 | MTR_1g041240 | 40.157 | 127 | 72 | 2 | 21 | 147 | 58 | 180 | 6.11e-25 | 106 |
MS.gene37052.t1 | MTR_1g041240 | 40.157 | 127 | 72 | 2 | 21 | 147 | 57 | 179 | 6.34e-25 | 106 |
MS.gene37052.t1 | MTR_3g079840 | 40.310 | 129 | 72 | 3 | 21 | 148 | 56 | 180 | 1.97e-24 | 104 |
MS.gene37052.t1 | MTR_3g079840 | 40.310 | 129 | 72 | 3 | 21 | 148 | 57 | 181 | 1.97e-24 | 104 |
MS.gene37052.t1 | MTR_5g086700 | 40.152 | 132 | 74 | 3 | 21 | 151 | 61 | 188 | 6.16e-24 | 103 |
MS.gene37052.t1 | MTR_5g086700 | 40.152 | 132 | 74 | 3 | 21 | 151 | 61 | 188 | 6.34e-24 | 103 |
MS.gene37052.t1 | MTR_5g091450 | 36.567 | 134 | 78 | 4 | 15 | 147 | 30 | 157 | 5.35e-23 | 100 |
MS.gene37052.t1 | MTR_5g091180 | 35.821 | 134 | 79 | 4 | 15 | 147 | 43 | 170 | 1.02e-19 | 90.5 |
MS.gene37052.t1 | MTR_5g091550 | 32.283 | 127 | 81 | 3 | 22 | 147 | 20 | 142 | 3.99e-15 | 76.3 |
MS.gene37052.t1 | MTR_5g091550 | 32.283 | 127 | 81 | 3 | 22 | 147 | 20 | 142 | 4.18e-15 | 76.3 |
MS.gene37052.t1 | MTR_8g006190 | 33.051 | 118 | 72 | 4 | 38 | 150 | 10 | 125 | 6.56e-13 | 69.7 |
MS.gene37052.t1 | MTR_3g106700 | 26.923 | 156 | 102 | 2 | 7 | 152 | 392 | 545 | 9.28e-13 | 69.7 |
MS.gene37052.t1 | MTR_4g123750 | 26.923 | 156 | 107 | 4 | 38 | 187 | 40 | 194 | 6.73e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37052.t1 | AT5G06600 | 43.846 | 130 | 68 | 3 | 19 | 147 | 54 | 179 | 3.50e-26 | 110 |
MS.gene37052.t1 | AT5G06600 | 43.846 | 130 | 68 | 3 | 19 | 147 | 53 | 178 | 3.74e-26 | 110 |
MS.gene37052.t1 | AT5G06600 | 43.846 | 130 | 68 | 3 | 19 | 147 | 54 | 179 | 3.81e-26 | 110 |
MS.gene37052.t1 | AT3G11910 | 44.531 | 128 | 66 | 3 | 21 | 147 | 55 | 178 | 8.78e-26 | 108 |
MS.gene37052.t1 | AT3G11910 | 44.531 | 128 | 66 | 3 | 21 | 147 | 55 | 178 | 8.78e-26 | 108 |
MS.gene37052.t1 | AT3G11910 | 44.531 | 128 | 66 | 3 | 21 | 147 | 54 | 177 | 8.86e-26 | 108 |
MS.gene37052.t1 | AT3G11910 | 44.531 | 128 | 66 | 3 | 21 | 147 | 54 | 177 | 8.86e-26 | 108 |
MS.gene37052.t1 | AT3G58270 | 36.667 | 120 | 71 | 2 | 20 | 138 | 7 | 122 | 8.96e-17 | 80.5 |
MS.gene37052.t1 | AT3G58270 | 36.667 | 120 | 71 | 2 | 20 | 138 | 7 | 122 | 8.96e-17 | 80.5 |
MS.gene37052.t1 | AT3G58270 | 36.667 | 120 | 71 | 2 | 20 | 138 | 7 | 122 | 8.96e-17 | 80.5 |
MS.gene37052.t1 | AT2G05410 | 36.220 | 127 | 77 | 3 | 22 | 147 | 9 | 132 | 2.04e-16 | 79.0 |
MS.gene37052.t1 | AT3G58250 | 29.213 | 178 | 106 | 5 | 1 | 175 | 1 | 161 | 9.68e-16 | 77.4 |
MS.gene37052.t1 | AT3G58340 | 32.624 | 141 | 83 | 3 | 8 | 147 | 2 | 131 | 1.02e-15 | 77.0 |
MS.gene37052.t1 | AT3G58340 | 32.624 | 141 | 83 | 3 | 8 | 147 | 2 | 131 | 1.23e-15 | 77.0 |
MS.gene37052.t1 | AT3G58260 | 23.242 | 327 | 204 | 12 | 18 | 338 | 5 | 290 | 1.40e-15 | 77.0 |
MS.gene37052.t1 | AT3G58410 | 32.692 | 156 | 90 | 6 | 21 | 174 | 8 | 150 | 3.57e-15 | 75.5 |
MS.gene37052.t1 | AT3G58210 | 30.769 | 156 | 103 | 4 | 20 | 174 | 7 | 158 | 1.33e-14 | 73.9 |
MS.gene37052.t1 | AT3G58370 | 32.738 | 168 | 96 | 4 | 14 | 178 | 2 | 155 | 2.51e-14 | 72.8 |
MS.gene37052.t1 | AT3G58350 | 34.965 | 143 | 80 | 4 | 8 | 147 | 2 | 134 | 3.37e-14 | 72.4 |
MS.gene37052.t1 | AT3G58350 | 34.965 | 143 | 80 | 4 | 8 | 147 | 2 | 134 | 3.37e-14 | 72.4 |
MS.gene37052.t1 | AT3G58290 | 26.296 | 270 | 172 | 9 | 21 | 277 | 11 | 266 | 9.06e-14 | 71.2 |
MS.gene37052.t1 | AT3G58200 | 32.203 | 118 | 76 | 2 | 20 | 136 | 7 | 121 | 1.11e-12 | 68.2 |
MS.gene37052.t1 | AT2G25320 | 25.604 | 207 | 136 | 5 | 7 | 201 | 391 | 591 | 5.74e-12 | 67.4 |
MS.gene37052.t1 | AT2G25320 | 25.604 | 207 | 136 | 5 | 7 | 201 | 390 | 590 | 6.06e-12 | 67.4 |
MS.gene37052.t1 | AT2G25320 | 25.604 | 207 | 136 | 5 | 7 | 201 | 391 | 591 | 8.26e-12 | 67.0 |
MS.gene37052.t1 | AT5G26320 | 26.627 | 169 | 113 | 4 | 25 | 187 | 65 | 228 | 1.45e-11 | 65.1 |
MS.gene37052.t1 | AT1G31390 | 31.746 | 126 | 80 | 3 | 18 | 138 | 1 | 125 | 3.77e-11 | 63.2 |
MS.gene37052.t1 | AT2G01790 | 31.200 | 125 | 84 | 2 | 24 | 147 | 11 | 134 | 9.72e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACCATGGATAGCCTTTC+AGG | 0.170273 | 8.2:+80258617 | None:intergenic |
TCAAAGAAAGTAGTTATTAT+TGG | 0.174067 | 8.2:-80258111 | MS.gene37052:CDS |
GTGACAATTTAGTCGATTTC+AGG | 0.192253 | 8.2:-80257886 | MS.gene37052:CDS |
GTGATTGTCTCCAAATCTTA+TGG | 0.207002 | 8.2:-80257673 | MS.gene37052:CDS |
CAAGTTCTTCCCATAAGATT+TGG | 0.257908 | 8.2:+80257663 | None:intergenic |
GGGTTGTTCTTGCTCCCTTT+TGG | 0.270422 | 8.2:+80258493 | None:intergenic |
AGGATTTGTGGAGAGGGATT+TGG | 0.279709 | 8.2:-80257474 | MS.gene37052:CDS |
GAGATTTCTTTGACAGGAAT+TGG | 0.299184 | 8.2:+80257923 | None:intergenic |
GAGTTGATTGAAGCAGAAAA+AGG | 0.304634 | 8.2:-80257494 | MS.gene37052:CDS |
TGTCGACAAGTTTGTACATT+TGG | 0.331373 | 8.2:-80258086 | MS.gene37052:CDS |
ACATATCTGCTCCACCCTTT+AGG | 0.335250 | 8.2:+80258418 | None:intergenic |
TGATTGTCTCCAAATCTTAT+GGG | 0.380902 | 8.2:-80257672 | MS.gene37052:CDS |
TGCTTGTGGATGTATGTTCA+TGG | 0.389870 | 8.2:-80257829 | MS.gene37052:CDS |
TTAGTCGATTTCAGGGGTAT+AGG | 0.399857 | 8.2:-80257878 | MS.gene37052:CDS |
TGGATGCACTTCGCAACTCT+TGG | 0.416130 | 8.2:-80258066 | MS.gene37052:CDS |
GTTCCCTTACAGAAATAATC+CGG | 0.426065 | 8.2:+80258005 | None:intergenic |
GAGTACGCTTTCTATTCGTC+TGG | 0.433353 | 8.2:+80257786 | None:intergenic |
CGGATTGTTATGAATCCAAA+AGG | 0.453634 | 8.2:-80258508 | MS.gene37052:CDS |
TTATCAATTTATTTGAATGT+TGG | 0.454715 | 8.2:-80258457 | MS.gene37052:CDS |
AAGCCCGGATTATTTCTGTA+AGG | 0.456756 | 8.2:-80258009 | MS.gene37052:CDS |
TTGACAGGAATTGGTTGTGC+TGG | 0.461911 | 8.2:+80257932 | None:intergenic |
GCTGAAGAGATTTCTTTGAC+AGG | 0.481214 | 8.2:+80257917 | None:intergenic |
TGACAATTTAGTCGATTTCA+GGG | 0.492488 | 8.2:-80257885 | MS.gene37052:CDS |
TGGGAAGAACTTGAGACAGT+TGG | 0.496978 | 8.2:-80257653 | MS.gene37052:CDS |
CTCATTGCAGATAAATAAGA+AGG | 0.497112 | 8.2:+80257608 | None:intergenic |
TACTCATAGATTTACAGAAT+GGG | 0.503133 | 8.2:-80257768 | MS.gene37052:CDS |
CAGATATGTAAATCTTGAGT+TGG | 0.510067 | 8.2:-80258404 | MS.gene37052:CDS |
GTGAATTGATCGGTCATCCA+TGG | 0.510069 | 8.2:+80258697 | None:intergenic |
TGAATTGATCGGTCATCCAT+GGG | 0.513308 | 8.2:+80258698 | None:intergenic |
TCTGTAAGGGAACATGAGTA+TGG | 0.513749 | 8.2:-80257995 | MS.gene37052:CDS |
AGCCCGGATTATTTCTGTAA+GGG | 0.517386 | 8.2:-80258008 | MS.gene37052:CDS |
ATTGATAATGACAAGTGACC+TGG | 0.518440 | 8.2:+80258472 | None:intergenic |
AGGGATTTGGATGCTAAACT+AGG | 0.526422 | 8.2:-80257461 | MS.gene37052:CDS |
AGAATGTAGAACTTATAGAG+AGG | 0.534364 | 8.2:-80257538 | MS.gene37052:CDS |
TCTTCCTGAAAGGCTATCCA+TGG | 0.543293 | 8.2:-80258621 | MS.gene37052:intron |
TCAGAAAGTTTCTTCCTGAA+AGG | 0.544381 | 8.2:-80258631 | MS.gene37052:CDS |
AATATTTGTTCCCTTGCTTG+TGG | 0.544627 | 8.2:-80257843 | MS.gene37052:CDS |
CACTTCGCAACTCTTGGAGT+GGG | 0.545439 | 8.2:-80258060 | MS.gene37052:CDS |
CTTCTTATTTATCTGCAATG+AGG | 0.548108 | 8.2:-80257607 | MS.gene37052:CDS |
GCATTGCTAACAATTGCAAA+AGG | 0.549086 | 8.2:-80258361 | MS.gene37052:intron |
GAATGGGCATTCACAGCATT+AGG | 0.550815 | 8.2:-80257752 | MS.gene37052:CDS |
ATACTTGTATTATTAAAGCC+CGG | 0.551657 | 8.2:-80258024 | MS.gene37052:CDS |
GTACGTCTTAGAATCACATT+GGG | 0.557415 | 8.2:+80258654 | None:intergenic |
AATCGTCCATGTGAATTGAT+CGG | 0.569447 | 8.2:+80258687 | None:intergenic |
TTCCCTTACAGAAATAATCC+GGG | 0.573403 | 8.2:+80258006 | None:intergenic |
AGTACGTCTTAGAATCACAT+TGG | 0.574179 | 8.2:+80258653 | None:intergenic |
GAATGTAGAACTTATAGAGA+GGG | 0.580859 | 8.2:-80257537 | MS.gene37052:CDS |
TGAACATACATCCACAAGCA+AGG | 0.589494 | 8.2:+80257832 | None:intergenic |
GTACTCATAGATTTACAGAA+TGG | 0.591630 | 8.2:-80257769 | MS.gene37052:CDS |
GTCTGGTTGTCAACAAGTGA+TGG | 0.605563 | 8.2:+80257803 | None:intergenic |
GCACTTCGCAACTCTTGGAG+TGG | 0.609049 | 8.2:-80258061 | MS.gene37052:CDS |
TGTTTAGAAAATATAGAACT+CGG | 0.609711 | 8.2:+80257729 | None:intergenic |
CGATCAAGAAGTTAGTGCGG+TGG | 0.612814 | 8.2:-80257963 | MS.gene37052:CDS |
GAACATACATCCACAAGCAA+GGG | 0.620686 | 8.2:+80257833 | None:intergenic |
GGATTGTTATGAATCCAAAA+GGG | 0.632540 | 8.2:-80258507 | MS.gene37052:CDS |
GGATGACCGATCAATTCACA+TGG | 0.652309 | 8.2:-80258693 | MS.gene37052:CDS |
TTGATAATGACAAGTGACCT+GGG | 0.656951 | 8.2:+80258473 | None:intergenic |
GACAATTTAGTCGATTTCAG+GGG | 0.659868 | 8.2:-80257884 | MS.gene37052:CDS |
AAAGGGAGCAAGAACAACCC+AGG | 0.668131 | 8.2:-80258490 | MS.gene37052:CDS |
CATTTGAGAAGAAATCCCCA+TGG | 0.685489 | 8.2:-80258714 | MS.gene37052:CDS |
AAACGATCAAGAAGTTAGTG+CGG | 0.726212 | 8.2:-80257966 | MS.gene37052:CDS |
GAATTGATCGGTCATCCATG+GGG | 0.737824 | 8.2:+80258699 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATCAATTTATTTGAATGT+TGG | - | chr8.2:80257730-80257749 | MS.gene37052:CDS | 15.0% |
!!! | AACAATTAGTTTTACATTTT+TGG | - | chr8.2:80257862-80257881 | MS.gene37052:CDS | 15.0% |
!!! | ATATTTTCTAAACACTAAAA+AGG | - | chr8.2:80258467-80258486 | MS.gene37052:CDS | 15.0% |
!! | AGTAAAGAATAGTTTATTAG+AGG | + | chr8.2:80258010-80258029 | None:intergenic | 20.0% |
!! | TCAAAGAAAGTAGTTATTAT+TGG | - | chr8.2:80258076-80258095 | MS.gene37052:CDS | 20.0% |
!! | TGTTTAGAAAATATAGAACT+CGG | + | chr8.2:80258461-80258480 | None:intergenic | 20.0% |
!!! | AAAATCAGTAACAGATTTTA+TGG | + | chr8.2:80257897-80257916 | None:intergenic | 20.0% |
!!! | ACAATTTTAATCTTCCTAAA+GGG | - | chr8.2:80257755-80257774 | MS.gene37052:CDS | 20.0% |
! | ATACTTGTATTATTAAAGCC+CGG | - | chr8.2:80258163-80258182 | MS.gene37052:intron | 25.0% |
! | TACTCATAGATTTACAGAAT+GGG | - | chr8.2:80258419-80258438 | MS.gene37052:CDS | 25.0% |
!! | ATGTTTTCGATATTCTTTTC+AGG | - | chr8.2:80257656-80257675 | MS.gene37052:CDS | 25.0% |
!! | GTTTTCTATCATCTACAATA+TGG | - | chr8.2:80257962-80257981 | MS.gene37052:CDS | 25.0% |
!!! | GACAATTTTAATCTTCCTAA+AGG | - | chr8.2:80257754-80257773 | MS.gene37052:CDS | 25.0% |
AGAATGTAGAACTTATAGAG+AGG | - | chr8.2:80258649-80258668 | MS.gene37052:CDS | 30.0% | |
CAGATATGTAAATCTTGAGT+TGG | - | chr8.2:80257783-80257802 | MS.gene37052:CDS | 30.0% | |
CTCATTGCAGATAAATAAGA+AGG | + | chr8.2:80258582-80258601 | None:intergenic | 30.0% | |
GAATGTAGAACTTATAGAGA+GGG | - | chr8.2:80258650-80258669 | MS.gene37052:CDS | 30.0% | |
GATATGCGTATGTAGTAAAT+TGG | + | chr8.2:80257610-80257629 | None:intergenic | 30.0% | |
GGATTGTTATGAATCCAAAA+GGG | - | chr8.2:80257680-80257699 | MS.gene37052:CDS | 30.0% | |
GTACTCATAGATTTACAGAA+TGG | - | chr8.2:80258418-80258437 | MS.gene37052:CDS | 30.0% | |
TAGATGATAGAAAACCCATA+TGG | + | chr8.2:80257957-80257976 | None:intergenic | 30.0% | |
TGATTGTCTCCAAATCTTAT+GGG | - | chr8.2:80258515-80258534 | MS.gene37052:intron | 30.0% | |
! | CTTCTTATTTATCTGCAATG+AGG | - | chr8.2:80258580-80258599 | MS.gene37052:intron | 30.0% |
! | TGACAATTTAGTCGATTTCA+GGG | - | chr8.2:80258302-80258321 | MS.gene37052:intron | 30.0% |
!! | ATTTTAATCTTCCTAAAGGG+TGG | - | chr8.2:80257758-80257777 | MS.gene37052:CDS | 30.0% |
!! | TTTTCGATATTCTTTTCAGG+CGG | - | chr8.2:80257659-80257678 | MS.gene37052:CDS | 30.0% |
!!! | CAGTTGGTTTTGATTTATCT+TGG | - | chr8.2:80258550-80258569 | MS.gene37052:intron | 30.0% |
AAACGATCAAGAAGTTAGTG+CGG | - | chr8.2:80258221-80258240 | MS.gene37052:intron | 35.0% | |
AATATTTGTTCCCTTGCTTG+TGG | - | chr8.2:80258344-80258363 | MS.gene37052:intron | 35.0% | |
AATCGTCCATGTGAATTGAT+CGG | + | chr8.2:80257503-80257522 | None:intergenic | 35.0% | |
AGAAAAAGGATTTGTGGAGA+GGG | - | chr8.2:80258707-80258726 | MS.gene37052:CDS | 35.0% | |
AGTACGTCTTAGAATCACAT+TGG | + | chr8.2:80257537-80257556 | None:intergenic | 35.0% | |
CAAGTTCTTCCCATAAGATT+TGG | + | chr8.2:80258527-80258546 | None:intergenic | 35.0% | |
CGGATTGTTATGAATCCAAA+AGG | - | chr8.2:80257679-80257698 | MS.gene37052:CDS | 35.0% | |
GAGATTTCTTTGACAGGAAT+TGG | + | chr8.2:80258267-80258286 | None:intergenic | 35.0% | |
GCATTGCTAACAATTGCAAA+AGG | - | chr8.2:80257826-80257845 | MS.gene37052:CDS | 35.0% | |
GTACGTCTTAGAATCACATT+GGG | + | chr8.2:80257536-80257555 | None:intergenic | 35.0% | |
GTGATTGTCTCCAAATCTTA+TGG | - | chr8.2:80258514-80258533 | MS.gene37052:intron | 35.0% | |
GTTCCCTTACAGAAATAATC+CGG | + | chr8.2:80258185-80258204 | None:intergenic | 35.0% | |
TCAGAAAGTTTCTTCCTGAA+AGG | - | chr8.2:80257556-80257575 | MS.gene37052:CDS | 35.0% | |
TGAAGCAGAAAAAGGATTTG+TGG | - | chr8.2:80258701-80258720 | MS.gene37052:CDS | 35.0% | |
TGTCGACAAGTTTGTACATT+TGG | - | chr8.2:80258101-80258120 | MS.gene37052:CDS | 35.0% | |
TTCCCTTACAGAAATAATCC+GGG | + | chr8.2:80258184-80258203 | None:intergenic | 35.0% | |
! | GACAATTTAGTCGATTTCAG+GGG | - | chr8.2:80258303-80258322 | MS.gene37052:intron | 35.0% |
! | GAGTTGATTGAAGCAGAAAA+AGG | - | chr8.2:80258693-80258712 | MS.gene37052:CDS | 35.0% |
! | GTGACAATTTAGTCGATTTC+AGG | - | chr8.2:80258301-80258320 | MS.gene37052:intron | 35.0% |
!! | ATTGATAATGACAAGTGACC+TGG | + | chr8.2:80257718-80257737 | None:intergenic | 35.0% |
!! | TTGATAATGACAAGTGACCT+GGG | + | chr8.2:80257717-80257736 | None:intergenic | 35.0% |
AGGGATTTGGATGCTAAACT+AGG | - | chr8.2:80258726-80258745 | MS.gene37052:CDS | 40.0% | |
ATTTACTCAAGCACCAACCA+TGG | + | chr8.2:80257586-80257605 | None:intergenic | 40.0% | |
CAGAAAAAGGATTTGTGGAG+AGG | - | chr8.2:80258706-80258725 | MS.gene37052:CDS | 40.0% | |
CATTTGAGAAGAAATCCCCA+TGG | - | chr8.2:80257473-80257492 | MS.gene37052:CDS | 40.0% | |
GAACATACATCCACAAGCAA+GGG | + | chr8.2:80258357-80258376 | None:intergenic | 40.0% | |
GCAAGTTTGCAACACCATAT+GGG | - | chr8.2:80257940-80257959 | MS.gene37052:CDS | 40.0% | |
GCTGAAGAGATTTCTTTGAC+AGG | + | chr8.2:80258273-80258292 | None:intergenic | 40.0% | |
TCTGTAAGGGAACATGAGTA+TGG | - | chr8.2:80258192-80258211 | MS.gene37052:intron | 40.0% | |
TGAACATACATCCACAAGCA+AGG | + | chr8.2:80258358-80258377 | None:intergenic | 40.0% | |
TGAATTGATCGGTCATCCAT+GGG | + | chr8.2:80257492-80257511 | None:intergenic | 40.0% | |
TGCAAGTTTGCAACACCATA+TGG | - | chr8.2:80257939-80257958 | MS.gene37052:CDS | 40.0% | |
TGCTTGTGGATGTATGTTCA+TGG | - | chr8.2:80258358-80258377 | MS.gene37052:intron | 40.0% | |
! | TTAGTCGATTTCAGGGGTAT+AGG | - | chr8.2:80258309-80258328 | MS.gene37052:intron | 40.0% |
! | TTTTCACATCTGCTTCTCTC+TGG | + | chr8.2:80258620-80258639 | None:intergenic | 40.0% |
!! | AAGCCCGGATTATTTCTGTA+AGG | - | chr8.2:80258178-80258197 | MS.gene37052:intron | 40.0% |
!! | AGCCCGGATTATTTCTGTAA+GGG | - | chr8.2:80258179-80258198 | MS.gene37052:intron | 40.0% |
ACATATCTGCTCCACCCTTT+AGG | + | chr8.2:80257772-80257791 | None:intergenic | 45.0% | |
AGGATTTGTGGAGAGGGATT+TGG | - | chr8.2:80258713-80258732 | MS.gene37052:CDS | 45.0% | |
GAATGGGCATTCACAGCATT+AGG | - | chr8.2:80258435-80258454 | MS.gene37052:CDS | 45.0% | |
GAATTGATCGGTCATCCATG+GGG | + | chr8.2:80257491-80257510 | None:intergenic | 45.0% | |
GAGTACGCTTTCTATTCGTC+TGG | + | chr8.2:80258404-80258423 | None:intergenic | 45.0% | |
GGATGACCGATCAATTCACA+TGG | - | chr8.2:80257494-80257513 | MS.gene37052:CDS | 45.0% | |
GTCTGGTTGTCAACAAGTGA+TGG | + | chr8.2:80258387-80258406 | None:intergenic | 45.0% | |
GTGAATTGATCGGTCATCCA+TGG | + | chr8.2:80257493-80257512 | None:intergenic | 45.0% | |
TCTTCCTGAAAGGCTATCCA+TGG | - | chr8.2:80257566-80257585 | MS.gene37052:CDS | 45.0% | |
TGGGAAGAACTTGAGACAGT+TGG | - | chr8.2:80258534-80258553 | MS.gene37052:intron | 45.0% | |
TTGACAGGAATTGGTTGTGC+TGG | + | chr8.2:80258258-80258277 | None:intergenic | 45.0% | |
AAAGGGAGCAAGAACAACCC+AGG | - | chr8.2:80257697-80257716 | MS.gene37052:CDS | 50.0% | |
CACTTCGCAACTCTTGGAGT+GGG | - | chr8.2:80258127-80258146 | MS.gene37052:CDS | 50.0% | |
CCAACCATGGATAGCCTTTC+AGG | + | chr8.2:80257573-80257592 | None:intergenic | 50.0% | |
CCTGAAAGGCTATCCATGGT+TGG | - | chr8.2:80257570-80257589 | MS.gene37052:CDS | 50.0% | |
CGATCAAGAAGTTAGTGCGG+TGG | - | chr8.2:80258224-80258243 | MS.gene37052:intron | 50.0% | |
TGGATGCACTTCGCAACTCT+TGG | - | chr8.2:80258121-80258140 | MS.gene37052:CDS | 50.0% | |
! | GGGTTGTTCTTGCTCCCTTT+TGG | + | chr8.2:80257697-80257716 | None:intergenic | 50.0% |
GCACTTCGCAACTCTTGGAG+TGG | - | chr8.2:80258126-80258145 | MS.gene37052:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 80257445 | 80258764 | 80257445 | ID=MS.gene37052 |
chr8.2 | mRNA | 80257445 | 80258764 | 80257445 | ID=MS.gene37052.t1;Parent=MS.gene37052 |
chr8.2 | exon | 80258622 | 80258764 | 80258622 | ID=MS.gene37052.t1.exon1;Parent=MS.gene37052.t1 |
chr8.2 | CDS | 80258622 | 80258764 | 80258622 | ID=cds.MS.gene37052.t1;Parent=MS.gene37052.t1 |
chr8.2 | exon | 80258362 | 80258531 | 80258362 | ID=MS.gene37052.t1.exon2;Parent=MS.gene37052.t1 |
chr8.2 | CDS | 80258362 | 80258531 | 80258362 | ID=cds.MS.gene37052.t1;Parent=MS.gene37052.t1 |
chr8.2 | exon | 80257445 | 80258148 | 80257445 | ID=MS.gene37052.t1.exon3;Parent=MS.gene37052.t1 |
chr8.2 | CDS | 80257445 | 80258148 | 80257445 | ID=cds.MS.gene37052.t1;Parent=MS.gene37052.t1 |
Gene Sequence |
Protein sequence |