Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38494.t1 | XP_013460406.1 | 93.4 | 665 | 43 | 1 | 1 | 665 | 1 | 664 | 2.70E-276 | 961.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38494.t1 | Q5FPX9 | 42.6 | 197 | 110 | 1 | 467 | 663 | 20 | 213 | 1.2e-38 | 162.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38494.t1 | A0A072UXB8 | 93.4 | 665 | 43 | 1 | 1 | 665 | 1 | 664 | 2.0e-276 | 961.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene38494 | 0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene38494 | 0.855484 | 6.12E-62 | -1.69E-46 |
| MS.gene049501 | MS.gene38494 | 0.855457 | 6.23E-62 | -1.69E-46 |
| MS.gene049647 | MS.gene38494 | 0.806209 | 9.19E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene38494 | 0.830368 | 3.05E-55 | -1.69E-46 |
| MS.gene050438 | MS.gene38494 | 0.815908 | 7.27E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene38494 | 0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene38494 | 0.838098 | 3.52E-57 | -1.69E-46 |
| MS.gene050721 | MS.gene38494 | 0.836084 | 1.15E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene38494 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene050780 | MS.gene38494 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene38494 | 0.82669 | 2.36E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene38494 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene38494 | 0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene38494 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene38494 | 0.805078 | 1.59E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene38494 | 0.820545 | 6.48E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene38494 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene38494 | 0.804745 | 1.86E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene38494 | 0.82524 | 5.22E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene38494 | 0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene38494 | 0.804228 | 2.39E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene38494 | 0.820319 | 7.31E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene38494 | 0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene38494 | 0.800489 | 1.41E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene38494 | 0.854894 | 9.08E-62 | -1.69E-46 |
| MS.gene052896 | MS.gene38494 | 0.857441 | 1.63E-62 | -1.69E-46 |
| MS.gene053008 | MS.gene38494 | 0.836158 | 1.10E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene38494 | 0.814184 | 1.75E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene38494 | 0.823288 | 1.50E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene38494 | 0.80696 | 6.38E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene38494 | 0.807565 | 4.75E-50 | -1.69E-46 |
| MS.gene055363 | MS.gene38494 | 0.818762 | 1.65E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene38494 | 0.80213 | 6.49E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene38494 | 0.82598 | 3.49E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene38494 | 0.818778 | 1.64E-52 | -1.69E-46 |
| MS.gene055608 | MS.gene38494 | 0.804038 | 2.62E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene38494 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene38494 | 0.808742 | 2.67E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene38494 | 0.813119 | 3.01E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene38494 | 0.8035 | 3.38E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene38494 | 0.818757 | 1.66E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene38494 | 0.851326 | 9.55E-61 | -1.69E-46 |
| MS.gene058168 | MS.gene38494 | 0.816312 | 5.90E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene38494 | 0.81042 | 1.16E-50 | -1.69E-46 |
| MS.gene058792 | MS.gene38494 | 0.807944 | 3.95E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene38494 | 0.80493 | 1.71E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene38494 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene38494 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene38494 | 0.811871 | 5.64E-51 | -1.69E-46 |
| MS.gene059937 | MS.gene38494 | 0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene38494 | 0.831192 | 1.92E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene38494 | 0.80386 | 2.85E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene38494 | 0.821894 | 3.17E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene38494 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene38494 | 0.811435 | 7.01E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene38494 | 0.8148 | 1.28E-51 | -1.69E-46 |
| MS.gene060689 | MS.gene38494 | 0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene38494 | 0.833117 | 6.41E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38494.t1 | MTR_3g466440 | 94.286 | 665 | 37 | 1 | 1 | 665 | 1 | 664 | 0.0 | 1201 |
| MS.gene38494.t1 | MTR_4g088800 | 39.521 | 167 | 90 | 3 | 490 | 649 | 118 | 280 | 6.15e-22 | 97.1 |
| MS.gene38494.t1 | MTR_3g109540 | 38.816 | 152 | 88 | 1 | 462 | 608 | 86 | 237 | 1.63e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38494.t1 | AT5G58370 | 75.484 | 310 | 73 | 2 | 356 | 665 | 158 | 464 | 1.24e-166 | 485 |
| MS.gene38494.t1 | AT5G58370 | 75.484 | 310 | 73 | 2 | 356 | 665 | 158 | 464 | 1.24e-166 | 485 |
| MS.gene38494.t1 | AT5G58370 | 74.913 | 287 | 69 | 2 | 356 | 642 | 158 | 441 | 1.77e-152 | 449 |
| MS.gene38494.t1 | AT5G11480 | 44.355 | 124 | 69 | 0 | 485 | 608 | 131 | 254 | 3.80e-25 | 107 |
| MS.gene38494.t1 | AT2G22870 | 32.864 | 213 | 126 | 3 | 444 | 649 | 81 | 283 | 4.20e-22 | 97.8 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAACTGATTGACTTAA+TGG | 0.128958 | 3.4:-62091452 | MS.gene38494:CDS |
| GAGAGAGGTGATAGAGAAAA+TGG | 0.190882 | 3.4:-62097755 | MS.gene38494:CDS |
| TGATAGGGAAAATGGGTTTA+AGG | 0.213891 | 3.4:-62097594 | MS.gene38494:CDS |
| GGCGCATGATAGAAATAAAA+AGG | 0.238071 | 3.4:-62095253 | MS.gene38494:CDS |
| TGGGCTGTATTGCACGGAAT+TGG | 0.243628 | 3.4:+62095422 | None:intergenic |
| GATAAGGAAAATGGGTATAA+AGG | 0.260428 | 3.4:-62097419 | MS.gene38494:CDS |
| TGGGCATTCTGAGACATTTC+AGG | 0.282317 | 3.4:+62095442 | None:intergenic |
| TTAACAGATGAAGAGTTTAG+AGG | 0.283430 | 3.4:-62097932 | MS.gene38494:CDS |
| TGATAGAGAAAATGGGTATA+AGG | 0.292592 | 3.4:-62097747 | MS.gene38494:CDS |
| GAGGAAAGGTGAGAACTTCT+AGG | 0.297398 | 3.4:-62097496 | MS.gene38494:CDS |
| AGAAGAGAAGGAGAAGAAAA+AGG | 0.312859 | 3.4:-62095479 | MS.gene38494:CDS |
| GCACGTCGCGCCACATCAAT+TGG | 0.323406 | 3.4:+62091059 | None:intergenic |
| TGATAGAGGAAATAGGTATA+AGG | 0.326706 | 3.4:-62097849 | MS.gene38494:CDS |
| GAAATTCTTACACCAACTTT+AGG | 0.349556 | 3.4:+62097974 | None:intergenic |
| AAGAGAAATGAAGAGTTTAG+AGG | 0.354265 | 3.4:-62097818 | MS.gene38494:CDS |
| CCCTTCAATACTTACCTTTG+TGG | 0.355451 | 3.4:-62095398 | MS.gene38494:CDS |
| GATGATTCCATTGCTGTTGA+TGG | 0.355744 | 3.4:-62096879 | MS.gene38494:intron |
| GATAGAGGAAATAGGTATAA+GGG | 0.357678 | 3.4:-62097848 | MS.gene38494:CDS |
| ATGATTATGATAGAGGAAAT+AGG | 0.357802 | 3.4:-62097856 | MS.gene38494:CDS |
| CTTCCAGAGATTGCATTTGC+TGG | 0.358627 | 3.4:-62094972 | MS.gene38494:intron |
| GATAGAGAAAATGGGTATAA+GGG | 0.364549 | 3.4:-62097746 | MS.gene38494:CDS |
| GCTTAGCTTAGTTGATTTGC+CGG | 0.366510 | 3.4:-62092488 | MS.gene38494:CDS |
| CTGTCTTGGTTAATACTATC+TGG | 0.385303 | 3.4:+62091093 | None:intergenic |
| CTCTTGTTTGAGATATCATA+TGG | 0.387910 | 3.4:+62096906 | None:intergenic |
| GGGCTGTATTGCACGGAATT+GGG | 0.388951 | 3.4:+62095423 | None:intergenic |
| ATAAGGAAAATGGGTATAAA+GGG | 0.397650 | 3.4:-62097418 | MS.gene38494:CDS |
| GACAATAAACTTCTTCAACT+TGG | 0.401509 | 3.4:-62092518 | MS.gene38494:CDS |
| TAGCTCGATTTGTCAAATAA+AGG | 0.402383 | 3.4:-62090745 | None:intergenic |
| GATAGGGAAAATGGGTTTAA+GGG | 0.402625 | 3.4:-62097593 | MS.gene38494:CDS |
| AAAATCTGACATGAAGAAAC+CGG | 0.404867 | 3.4:-62097000 | MS.gene38494:CDS |
| AAGGACAAGAAAGAGATTGA+TGG | 0.404992 | 3.4:-62097071 | MS.gene38494:CDS |
| TAATGCACTTACTAGACAAT+GGG | 0.405934 | 3.4:-62092679 | MS.gene38494:CDS |
| GAGAAGGGAATGTTATCTAA+TGG | 0.406229 | 3.4:+62095203 | None:intergenic |
| TTCTTCAATGTTCTCTCTGT+CGG | 0.408094 | 3.4:+62095172 | None:intergenic |
| ACTCCTCTCTTCACCCGATT+CGG | 0.408284 | 3.4:+62097691 | None:intergenic |
| AAGAAACCGTTGTTTAAGAA+AGG | 0.410870 | 3.4:-62097212 | MS.gene38494:CDS |
| TCCACAAAGGTAAGTATTGA+AGG | 0.423833 | 3.4:+62095397 | None:intergenic |
| CCGATGATGAACGTACAATC+TGG | 0.425073 | 3.4:-62097151 | MS.gene38494:CDS |
| ATGATGGCTAGCTCGAAATC+TGG | 0.428420 | 3.4:-62090806 | MS.gene38494:CDS |
| AGAGTATATGCTAATGAGGA+AGG | 0.429682 | 3.4:-62097281 | MS.gene38494:CDS |
| AACTTTAGAGGAATGGAATC+AGG | 0.430865 | 3.4:-62097551 | MS.gene38494:CDS |
| AAAGGTAAGTATTGAAGGGC+TGG | 0.435344 | 3.4:+62095402 | None:intergenic |
| AAGAAAAGGGTGAACTTTAG+AGG | 0.436873 | 3.4:-62097563 | MS.gene38494:CDS |
| AAACTTTAAAGGAATGGAAT+CGG | 0.437384 | 3.4:-62097378 | MS.gene38494:CDS |
| AGAAGAAGTGAAAGAAGCTT+GGG | 0.439892 | 3.4:-62092443 | MS.gene38494:CDS |
| ATACCAGCAAATGCAATCTC+TGG | 0.440853 | 3.4:+62094969 | None:intergenic |
| ACAATAAACTTCTTCAACTT+GGG | 0.440946 | 3.4:-62092517 | MS.gene38494:CDS |
| GACTTTGGAGGAACCGAATC+GGG | 0.442139 | 3.4:-62097704 | MS.gene38494:CDS |
| ATGAAGAAAAGGGTGGACTT+TGG | 0.442859 | 3.4:-62097719 | MS.gene38494:CDS |
| AATGCAATCTCTGGAAGATT+AGG | 0.442868 | 3.4:+62094978 | None:intergenic |
| TTAGTTGATTTGCCGGGGTA+TGG | 0.443308 | 3.4:-62092481 | MS.gene38494:CDS |
| GAAGAGAGTATATGCTAATG+AGG | 0.444981 | 3.4:-62097285 | MS.gene38494:CDS |
| AGAAACCGTTGTTTAAGAAA+GGG | 0.449496 | 3.4:-62097211 | MS.gene38494:CDS |
| GGTGAAAATGATTATGATAG+AGG | 0.450608 | 3.4:-62097863 | MS.gene38494:CDS |
| GGACTTTGGAGGAACCGAAT+CGG | 0.454928 | 3.4:-62097705 | MS.gene38494:CDS |
| TCAATCAGTTCAATATCTCT+TGG | 0.464126 | 3.4:+62091460 | None:intergenic |
| TTCTCCCCTTTCTTAAACAA+CGG | 0.468078 | 3.4:+62097206 | None:intergenic |
| GGTTGAATTACAGACTTGTT+CGG | 0.468286 | 3.4:+62090921 | None:intergenic |
| AGGGAAGGTGAGAAGTAGAA+AGG | 0.472773 | 3.4:-62097648 | MS.gene38494:CDS |
| CATGAAGAAACCGGGGTTGG+AGG | 0.477547 | 3.4:-62096991 | MS.gene38494:CDS |
| GTTTAAGAAAGGGGAGAAGA+AGG | 0.479656 | 3.4:-62097201 | MS.gene38494:CDS |
| AATTATAATTCACAGCTGTT+GGG | 0.481687 | 3.4:-62095281 | MS.gene38494:intron |
| AACTTTAAAGGAATGGAATC+GGG | 0.489442 | 3.4:-62097377 | MS.gene38494:CDS |
| AGAGAGGTGATAGAGAAAAT+GGG | 0.489685 | 3.4:-62097754 | MS.gene38494:CDS |
| ATAATTCACAGCTGTTGGGC+AGG | 0.491671 | 3.4:-62095277 | MS.gene38494:intron |
| AAGAAGAAGTGAAAGAAGCT+TGG | 0.497374 | 3.4:-62092444 | MS.gene38494:CDS |
| ATAAGGGGAAGATGAAGAAA+AGG | 0.498161 | 3.4:-62097730 | MS.gene38494:CDS |
| AAATGTAAACTTTAAAGGAA+TGG | 0.501146 | 3.4:-62097384 | MS.gene38494:CDS |
| TGGATGAAAGCGAGAAATCA+TGG | 0.501276 | 3.4:-62097256 | MS.gene38494:CDS |
| CACGTCGCGCCACATCAATT+GGG | 0.502582 | 3.4:+62091060 | None:intergenic |
| AAGGGTGAACTTTAGAGGAA+TGG | 0.503777 | 3.4:-62097558 | MS.gene38494:CDS |
| GAACCTAGAATACCTGTGTA+TGG | 0.504674 | 3.4:+62092628 | None:intergenic |
| AGAAGTAGAAAGGATGAGAA+TGG | 0.506799 | 3.4:-62097638 | MS.gene38494:CDS |
| GCTTTCAAATCAAAGTTTGA+AGG | 0.510875 | 3.4:-62097090 | MS.gene38494:CDS |
| GAGTATATGCTAATGAGGAA+GGG | 0.512752 | 3.4:-62097280 | MS.gene38494:CDS |
| TTAAGGGGAAGGTGAAGAAA+AGG | 0.512976 | 3.4:-62097577 | MS.gene38494:CDS |
| CAAGTCTGTAATTCAACCTC+TGG | 0.514102 | 3.4:-62090916 | MS.gene38494:intron |
| CTTAGCTTAGTTGATTTGCC+GGG | 0.514281 | 3.4:-62092487 | MS.gene38494:CDS |
| TGGGAATACAGTATCTGTCT+TGG | 0.515848 | 3.4:+62091079 | None:intergenic |
| TTCAGGAAATACAGAAGAGA+AGG | 0.517703 | 3.4:-62095491 | MS.gene38494:intron |
| GAAGGTGAGAGATGAGACTG+TGG | 0.519033 | 3.4:-62097183 | MS.gene38494:CDS |
| GAATGGAATCAGGTGAAGAA+AGG | 0.522694 | 3.4:-62097541 | MS.gene38494:CDS |
| TTAATGCACTTACTAGACAA+TGG | 0.524804 | 3.4:-62092680 | MS.gene38494:CDS |
| AGGAAAGGTGAGAACTTCTA+GGG | 0.526253 | 3.4:-62097495 | MS.gene38494:CDS |
| CCACAAAGGTAAGTATTGAA+GGG | 0.529256 | 3.4:+62095398 | None:intergenic |
| TAAGGGGAAGGTGAAGAAAA+GGG | 0.532713 | 3.4:-62097576 | MS.gene38494:CDS |
| AGTATATGCTAATGAGGAAG+GGG | 0.533694 | 3.4:-62097279 | MS.gene38494:CDS |
| TTTGACAAATCGAGCTACGC+TGG | 0.535258 | 3.4:+62090751 | None:intergenic |
| GAAACCGTTGTTTAAGAAAG+GGG | 0.538489 | 3.4:-62097210 | MS.gene38494:CDS |
| TAGAATACCTGTGTATGGCC+AGG | 0.542553 | 3.4:+62092633 | None:intergenic |
| GAATGGAATCGGGTGAAGAA+AGG | 0.543185 | 3.4:-62097367 | MS.gene38494:CDS |
| CTAACAGGAAAGTCAAATGT+TGG | 0.552575 | 3.4:-62092717 | MS.gene38494:intron |
| AAGAAAAGGGTGGACTTTGG+AGG | 0.552587 | 3.4:-62097716 | MS.gene38494:CDS |
| ATCTCTGGAAGATTAGGAGG+TGG | 0.553184 | 3.4:+62094984 | None:intergenic |
| AAGGTAAGTATTGAAGGGCT+GGG | 0.555333 | 3.4:+62095403 | None:intergenic |
| ATTCACCTCTTCGATTTGCA+TGG | 0.557235 | 3.4:+62091037 | None:intergenic |
| GCAATCTCTGGAAGATTAGG+AGG | 0.558921 | 3.4:+62094981 | None:intergenic |
| AGAGGAAATGAAGAAAAGAG+TGG | 0.559097 | 3.4:-62097914 | MS.gene38494:CDS |
| CGGTGAGAAGTTTCATGAGA+GGG | 0.559454 | 3.4:-62097342 | MS.gene38494:CDS |
| CGATGATGAACGTACAATCT+GGG | 0.566697 | 3.4:-62097150 | MS.gene38494:CDS |
| TTAGCATCATCCTCCAACCC+CGG | 0.568943 | 3.4:+62096981 | None:intergenic |
| ATATGCTAATGAGGAAGGGG+TGG | 0.569386 | 3.4:-62097276 | MS.gene38494:CDS |
| GCTAGCTCGAAATCTGGAGC+AGG | 0.570364 | 3.4:-62090800 | MS.gene38494:CDS |
| TGACATGAAGAAACCGGGGT+TGG | 0.571279 | 3.4:-62096994 | MS.gene38494:CDS |
| GCGGTGAGAAGTTTCATGAG+AGG | 0.574177 | 3.4:-62097343 | MS.gene38494:CDS |
| AACTGATTGACTTAATGGAA+AGG | 0.575727 | 3.4:-62091447 | MS.gene38494:intron |
| ATAGAGGAAATAGGTATAAG+GGG | 0.584139 | 3.4:-62097847 | MS.gene38494:CDS |
| GGAATGTTATCTAATGGCAT+AGG | 0.586043 | 3.4:+62095209 | None:intergenic |
| AGAAGTGAAAGAAGCTTGGG+AGG | 0.587973 | 3.4:-62092440 | MS.gene38494:CDS |
| ATAGAGAAAATGGGTATAAG+GGG | 0.591187 | 3.4:-62097745 | MS.gene38494:CDS |
| ATACGTACCATCAACAGCAA+TGG | 0.594902 | 3.4:+62096872 | None:intergenic |
| AAATCTGACATGAAGAAACC+GGG | 0.594958 | 3.4:-62096999 | MS.gene38494:CDS |
| TAAGGGGAAGATGAAGAAAA+GGG | 0.595901 | 3.4:-62097729 | MS.gene38494:CDS |
| ATTCACAGCTGTTGGGCAGG+AGG | 0.597657 | 3.4:-62095274 | MS.gene38494:intron |
| CCAGATTGTACGTTCATCAT+CGG | 0.597858 | 3.4:+62097151 | None:intergenic |
| AGAAATGAAGAGTTTAGAGG+AGG | 0.602155 | 3.4:-62097815 | MS.gene38494:CDS |
| GGAAAATGGGTTTAAGGGGA+AGG | 0.603720 | 3.4:-62097588 | MS.gene38494:CDS |
| TCTCTGGAAGATTAGGAGGT+GGG | 0.607158 | 3.4:+62094985 | None:intergenic |
| TACTGTATTCCCAATTGATG+TGG | 0.607301 | 3.4:-62091069 | MS.gene38494:CDS |
| AAGGGCTGGGCTGTATTGCA+CGG | 0.609898 | 3.4:+62095416 | None:intergenic |
| GCATATGCAAATCCATACCC+CGG | 0.612327 | 3.4:+62092469 | None:intergenic |
| GTACGGACATCAGACAAGCC+TGG | 0.614464 | 3.4:-62092651 | MS.gene38494:CDS |
| ATAGGGAAAATGGGTTTAAG+GGG | 0.615062 | 3.4:-62097592 | MS.gene38494:CDS |
| TGCACTTACTAGACAATGGG+GGG | 0.615214 | 3.4:-62092676 | MS.gene38494:CDS |
| GAACCGAATCGGGTGAAGAG+AGG | 0.615316 | 3.4:-62097694 | MS.gene38494:CDS |
| GGGGAAGATGAAGAAAAGGG+TGG | 0.621693 | 3.4:-62097726 | MS.gene38494:CDS |
| ATGCACTTACTAGACAATGG+GGG | 0.621959 | 3.4:-62092677 | MS.gene38494:CDS |
| AGACAAGCCTGGCCATACAC+AGG | 0.636059 | 3.4:-62092640 | MS.gene38494:intron |
| GAGTATGTAGCAACACGAGT+TGG | 0.639967 | 3.4:-62091529 | MS.gene38494:CDS |
| TTAGCTTAGTTGATTTGCCG+GGG | 0.645428 | 3.4:-62092486 | MS.gene38494:CDS |
| ACGTGCCATGCAAATCGAAG+AGG | 0.659942 | 3.4:-62091042 | MS.gene38494:intron |
| GGTGAGAAGTTTCATGAGAG+GGG | 0.660728 | 3.4:-62097341 | MS.gene38494:CDS |
| TTGAAGCATTATGTCTACTG+AGG | 0.660792 | 3.4:-62098026 | None:intergenic |
| GAAAGCGAGAAATCATGGAG+TGG | 0.697161 | 3.4:-62097251 | MS.gene38494:CDS |
| GAATCGGGTGAAGAGAGGAG+TGG | 0.709100 | 3.4:-62097689 | MS.gene38494:CDS |
| AATGCACTTACTAGACAATG+GGG | 0.709925 | 3.4:-62092678 | MS.gene38494:CDS |
| AATCTGACATGAAGAAACCG+GGG | 0.727179 | 3.4:-62096998 | MS.gene38494:CDS |
| GAATCGGGTGAAGAAAGGAG+CGG | 0.734403 | 3.4:-62097362 | MS.gene38494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 62090748 | 62098038 | 62090748 | ID=MS.gene38494 |
| chr3.4 | mRNA | 62090748 | 62098038 | 62090748 | ID=MS.gene38494.t1;Parent=MS.gene38494 |
| chr3.4 | exon | 62096880 | 62098038 | 62096880 | ID=MS.gene38494.t1.exon1;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62096880 | 62098038 | 62096880 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62095390 | 62095508 | 62095390 | ID=MS.gene38494.t1.exon2;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62095390 | 62095508 | 62095390 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62095169 | 62095288 | 62095169 | ID=MS.gene38494.t1.exon3;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62095169 | 62095288 | 62095169 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62094973 | 62095060 | 62094973 | ID=MS.gene38494.t1.exon4;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62094973 | 62095060 | 62094973 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62092641 | 62092732 | 62092641 | ID=MS.gene38494.t1.exon5;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62092641 | 62092732 | 62092641 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62092435 | 62092539 | 62092435 | ID=MS.gene38494.t1.exon6;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62092435 | 62092539 | 62092435 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62091448 | 62091557 | 62091448 | ID=MS.gene38494.t1.exon7;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62091448 | 62091557 | 62091448 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62091043 | 62091130 | 62091043 | ID=MS.gene38494.t1.exon8;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62091043 | 62091130 | 62091043 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62090917 | 62090952 | 62090917 | ID=MS.gene38494.t1.exon9;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62090917 | 62090952 | 62090917 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| chr3.4 | exon | 62090748 | 62090828 | 62090748 | ID=MS.gene38494.t1.exon10;Parent=MS.gene38494.t1 |
| chr3.4 | CDS | 62090748 | 62090828 | 62090748 | ID=cds.MS.gene38494.t1;Parent=MS.gene38494.t1 |
| Gene Sequence |
| Protein sequence |
