Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40173.t1 | XP_003610656.3 | 95.1 | 587 | 28 | 1 | 1 | 586 | 1 | 587 | 0.00E+00 | 1134.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40173.t1 | O81032 | 64.5 | 561 | 196 | 2 | 24 | 581 | 29 | 589 | 2.6e-218 | 759.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40173.t1 | A0A396HPJ0 | 95.1 | 587 | 28 | 1 | 1 | 586 | 1 | 587 | 0.0e+00 | 1134.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene40173 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene050720 | MS.gene40173 | 0.825996 | 3.46E-54 | -1.69E-46 |
| MS.gene051973 | MS.gene40173 | 0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene40173 | 0.826057 | 3.34E-54 | -1.69E-46 |
| MS.gene052212 | MS.gene40173 | 0.803319 | 3.69E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene40173 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene40173 | -0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene40173 | -0.800204 | 1.61E-48 | -1.69E-46 |
| MS.gene052606 | MS.gene40173 | 0.814502 | 1.49E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene40173 | -0.814245 | 1.70E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene40173 | -0.814612 | 1.41E-51 | -1.69E-46 |
| MS.gene053097 | MS.gene40173 | 0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene40173 | -0.81168 | 6.20E-51 | -1.69E-46 |
| MS.gene053403 | MS.gene40173 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene40173 | 0.84402 | 9.79E-59 | -1.69E-46 |
| MS.gene054146 | MS.gene40173 | 0.810522 | 1.11E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene40173 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene40173 | -0.825759 | 3.93E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene40173 | 0.835426 | 1.69E-56 | -1.69E-46 |
| MS.gene054884 | MS.gene40173 | 0.804151 | 2.48E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene40173 | 0.829311 | 5.53E-55 | -1.69E-46 |
| MS.gene056218 | MS.gene40173 | 0.843344 | 1.48E-58 | -1.69E-46 |
| MS.gene056590 | MS.gene40173 | 0.808488 | 3.02E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene40173 | 0.809023 | 2.32E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene40173 | 0.826034 | 3.39E-54 | -1.69E-46 |
| MS.gene056748 | MS.gene40173 | 0.818398 | 2.00E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene40173 | 0.829497 | 4.98E-55 | -1.69E-46 |
| MS.gene056988 | MS.gene40173 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene057081 | MS.gene40173 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene40173 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene057291 | MS.gene40173 | 0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene40173 | 0.816125 | 6.50E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene40173 | 0.80322 | 3.87E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene40173 | -0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene40173 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene40173 | -0.810639 | 1.04E-50 | -1.69E-46 |
| MS.gene059480 | MS.gene40173 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene059891 | MS.gene40173 | 0.817168 | 3.79E-52 | -1.69E-46 |
| MS.gene059892 | MS.gene40173 | 0.842561 | 2.40E-58 | -1.69E-46 |
| MS.gene059953 | MS.gene40173 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene40173 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene40173 | 0.839118 | 1.92E-57 | -1.69E-46 |
| MS.gene060593 | MS.gene40173 | 0.806961 | 6.38E-50 | -1.69E-46 |
| MS.gene061038 | MS.gene40173 | 0.805542 | 1.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40173.t1 | MTR_5g005540 | 95.164 | 579 | 27 | 1 | 9 | 586 | 1 | 579 | 0.0 | 1120 |
| MS.gene40173.t1 | MTR_8g024560 | 66.901 | 568 | 185 | 3 | 17 | 581 | 12 | 579 | 0.0 | 807 |
| MS.gene40173.t1 | MTR_1g026710 | 47.661 | 449 | 229 | 4 | 135 | 582 | 56 | 499 | 3.24e-146 | 432 |
| MS.gene40173.t1 | MTR_7g118100 | 82.734 | 139 | 24 | 0 | 447 | 585 | 16 | 154 | 1.78e-73 | 232 |
| MS.gene40173.t1 | MTR_7g118095 | 72.483 | 149 | 34 | 2 | 1 | 146 | 2 | 146 | 1.97e-67 | 216 |
| MS.gene40173.t1 | MTR_1g026680 | 38.662 | 269 | 133 | 2 | 231 | 499 | 58 | 294 | 3.02e-56 | 192 |
| MS.gene40173.t1 | MTR_8g024550 | 77.083 | 48 | 11 | 0 | 452 | 499 | 3 | 50 | 1.43e-24 | 97.1 |
| MS.gene40173.t1 | MTR_6g033475 | 62.121 | 66 | 25 | 0 | 417 | 482 | 121 | 186 | 1.09e-19 | 87.4 |
| MS.gene40173.t1 | MTR_1g051520 | 47.297 | 74 | 39 | 0 | 409 | 482 | 15 | 88 | 6.37e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40173.t1 | AT2G46760 | 63.763 | 574 | 202 | 3 | 14 | 581 | 16 | 589 | 0.0 | 779 |
| MS.gene40173.t1 | AT2G46740 | 62.434 | 567 | 210 | 2 | 18 | 581 | 19 | 585 | 0.0 | 769 |
| MS.gene40173.t1 | AT2G46750 | 62.172 | 571 | 212 | 3 | 18 | 584 | 15 | 585 | 0.0 | 765 |
| MS.gene40173.t1 | AT1G32300 | 60.315 | 572 | 222 | 4 | 14 | 581 | 3 | 573 | 0.0 | 720 |
| MS.gene40173.t1 | AT5G56490 | 59.259 | 567 | 226 | 4 | 19 | 581 | 7 | 572 | 0.0 | 711 |
| MS.gene40173.t1 | AT5G11540 | 46.794 | 577 | 295 | 7 | 12 | 583 | 8 | 577 | 6.86e-179 | 518 |
| MS.gene40173.t1 | AT5G56470 | 65.517 | 232 | 79 | 1 | 353 | 583 | 18 | 249 | 9.97e-108 | 324 |
Find 128 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCTATTTATAATATA+TGG | 0.091909 | 5.2:-599758 | MS.gene40173:CDS |
| CCCCACCAATATGGTGTATT+TGG | 0.188327 | 5.2:+599359 | None:intergenic |
| CATGAGCACCAGTGCTAATT+AGG | 0.257383 | 5.2:+599321 | None:intergenic |
| TATAGGGGACTCAAGAATTA+AGG | 0.267243 | 5.2:-596127 | MS.gene40173:CDS |
| AGGGACATGTTTGGATAGTT+TGG | 0.269173 | 5.2:-596172 | MS.gene40173:CDS |
| CAAATAGGGTTGTTCAAATA+TGG | 0.278248 | 5.2:-595841 | MS.gene40173:CDS |
| AATGCAGCCAGAATTTCTTT+AGG | 0.279442 | 5.2:-599170 | MS.gene40173:CDS |
| ACATTGGCAGGCATTGCTTA+TGG | 0.280315 | 5.2:-597359 | MS.gene40173:CDS |
| ATTGAAGAGATAGAACAAAT+AGG | 0.284529 | 5.2:-595856 | MS.gene40173:CDS |
| AGAATTTCTTTAGGGGTTCT+TGG | 0.296221 | 5.2:-599161 | MS.gene40173:CDS |
| ATGCAGCCAGAATTTCTTTA+GGG | 0.319315 | 5.2:-599169 | MS.gene40173:CDS |
| TTACCCCATATATTATAAAT+AGG | 0.323032 | 5.2:+599753 | None:intergenic |
| GGTGATGAATTGATTACTTT+TGG | 0.325703 | 5.2:-598136 | MS.gene40173:CDS |
| TCTTCCTATTTATAATATAT+GGG | 0.333446 | 5.2:-599757 | MS.gene40173:CDS |
| AAATGAGCACAGCTTGTATA+GGG | 0.346844 | 5.2:-596143 | MS.gene40173:CDS |
| TACAACTTCTAGGGCATACT+TGG | 0.350165 | 5.2:-595962 | MS.gene40173:CDS |
| TTCTGGCTGCATTAAGATCT+TGG | 0.351590 | 5.2:+599180 | None:intergenic |
| CGTGTCTCTGTAAATACATT+TGG | 0.353710 | 5.2:-598043 | MS.gene40173:CDS |
| TGCGTTATGTTACAACTTCT+AGG | 0.355002 | 5.2:-595972 | MS.gene40173:CDS |
| TTATTTGATGAACACTGAAT+TGG | 0.359791 | 5.2:+599710 | None:intergenic |
| TTTATAGGTTACCCTACAAT+TGG | 0.371803 | 5.2:-598212 | MS.gene40173:intron |
| AATAGAAATGTAGGATTTGT+GGG | 0.373649 | 5.2:-595796 | MS.gene40173:CDS |
| ATAAGGATGCAAGGGTTTGT+AGG | 0.373655 | 5.2:-595552 | MS.gene40173:CDS |
| CAAATGAGCACAGCTTGTAT+AGG | 0.376160 | 5.2:-596144 | MS.gene40173:CDS |
| TCTGTAAATACATTTGGAAA+TGG | 0.379112 | 5.2:-598037 | MS.gene40173:CDS |
| ATATGGAGGGTTACCCCATT+GGG | 0.386637 | 5.2:-595824 | MS.gene40173:CDS |
| TCTAAGCCACACAGTGCCTT+TGG | 0.390414 | 5.2:+596015 | None:intergenic |
| AAGAACCCCTAAAGAAATTC+TGG | 0.393239 | 5.2:+599163 | None:intergenic |
| CAGACCAGGCAGAATCTATA+AGG | 0.400088 | 5.2:-595569 | MS.gene40173:CDS |
| CTAGCTTGTCCTGATGATAA+TGG | 0.400394 | 5.2:-599512 | MS.gene40173:CDS |
| TTGAAGAGATAGAACAAATA+GGG | 0.401394 | 5.2:-595855 | MS.gene40173:CDS |
| TGAAGAGGGGTTCCAATTGT+AGG | 0.412025 | 5.2:+598200 | None:intergenic |
| CGGTTGTTGAATCCAACAAC+GGG | 0.428344 | 5.2:+596207 | None:intergenic |
| ACAATCATCAGGGACATGTT+TGG | 0.432635 | 5.2:-596181 | MS.gene40173:CDS |
| AACAACCGAATACAATCATC+AGG | 0.432752 | 5.2:-596192 | MS.gene40173:CDS |
| GAACACTGAATTGGATCTGC+TGG | 0.438312 | 5.2:+599719 | None:intergenic |
| GCAAAGATCCATTGACTCCT+AGG | 0.438376 | 5.2:-595894 | MS.gene40173:CDS |
| TTTATTGGATACCCCGTTGT+TGG | 0.439150 | 5.2:-596219 | MS.gene40173:CDS |
| TGGTGGGGTTTAACCATTGG+TGG | 0.442781 | 5.2:-599344 | MS.gene40173:CDS |
| CTCTGCCAAATACACCATAT+TGG | 0.446772 | 5.2:-599364 | MS.gene40173:CDS |
| AAAGTTGACCACTGAAACAT+TGG | 0.447525 | 5.2:-597375 | MS.gene40173:CDS |
| ATGGTTAAACCCCACCAATA+TGG | 0.449948 | 5.2:+599350 | None:intergenic |
| TGAGGCTGCAAGGTTTGAAA+TGG | 0.451881 | 5.2:-599387 | MS.gene40173:CDS |
| TCATCAGGACAAGCTAGCTT+TGG | 0.454874 | 5.2:+599518 | None:intergenic |
| GGTTCTTGGAGTTATTTCTC+AGG | 0.455282 | 5.2:-599147 | MS.gene40173:intron |
| ATGTCCCTGATGATTGTATT+CGG | 0.457805 | 5.2:+596187 | None:intergenic |
| GGAAGTACATTGTGGGGTAA+AGG | 0.462925 | 5.2:-599299 | MS.gene40173:CDS |
| AATGGTTTATATGATTCCAT+TGG | 0.463396 | 5.2:-598019 | MS.gene40173:CDS |
| ATTAGTAGTCCATTATCATC+AGG | 0.465886 | 5.2:+599503 | None:intergenic |
| AAATAGAAATGTAGGATTTG+TGG | 0.469318 | 5.2:-595797 | MS.gene40173:CDS |
| AATATGGAGGGTTACCCCAT+TGG | 0.476962 | 5.2:-595825 | MS.gene40173:CDS |
| TATCCATCTTCACATTCTGC+AGG | 0.483342 | 5.2:+599233 | None:intergenic |
| AGCTCTGCAAATGCTTCGAT+CGG | 0.485188 | 5.2:+599649 | None:intergenic |
| TCATAAAGCCTAGGAGTCAA+TGG | 0.486792 | 5.2:+595886 | None:intergenic |
| GCTCTGCAAATGCTTCGATC+GGG | 0.489344 | 5.2:+599650 | None:intergenic |
| TTAACACTTGCTAGAACTAC+AGG | 0.489651 | 5.2:-597971 | MS.gene40173:intron |
| TATTGGTGGGGTTTAACCAT+TGG | 0.490022 | 5.2:-599347 | MS.gene40173:CDS |
| TGCACCATCACGAATTCATA+TGG | 0.491511 | 5.2:-599680 | MS.gene40173:CDS |
| ATGGTATCCAAATCAACAAA+AGG | 0.495917 | 5.2:-598086 | MS.gene40173:CDS |
| TCACTAGAGAAAAGTCTCTT+CGG | 0.496911 | 5.2:+595715 | None:intergenic |
| ATTAAAAGATGGATGTGCAT+TGG | 0.503020 | 5.2:-595650 | MS.gene40173:CDS |
| TGGACTTCGCTCAACACCTT+CGG | 0.503539 | 5.2:-597999 | MS.gene40173:CDS |
| AATGCTGTATCGTAATTGAA+TGG | 0.505261 | 5.2:+596102 | None:intergenic |
| AAAGATGGATGTGCATTGGA+AGG | 0.509773 | 5.2:-595646 | MS.gene40173:CDS |
| CTAATTAGCACTGGTGCTCA+TGG | 0.510117 | 5.2:-599320 | MS.gene40173:CDS |
| GCCAAATACACCATATTGGT+GGG | 0.516331 | 5.2:-599360 | MS.gene40173:CDS |
| GCGTTATGTTACAACTTCTA+GGG | 0.518082 | 5.2:-595971 | MS.gene40173:CDS |
| GCATCCTTATAGATTCTGCC+TGG | 0.521471 | 5.2:+595565 | None:intergenic |
| TGTAAGAGATCGCTTGAAGA+GGG | 0.521505 | 5.2:+598186 | None:intergenic |
| ATGAGCTCCGCCTCTGTGGT+TGG | 0.522032 | 5.2:+599611 | None:intergenic |
| GGAGTGACAATATTAAAAGA+TGG | 0.527315 | 5.2:-595661 | MS.gene40173:CDS |
| TGCTCATGGAAGTACATTGT+GGG | 0.529109 | 5.2:-599306 | MS.gene40173:CDS |
| GAAGAGGGGTTCCAATTGTA+GGG | 0.530740 | 5.2:+598201 | None:intergenic |
| AAGAACTACTTCTGCAGACC+AGG | 0.530862 | 5.2:-595583 | MS.gene40173:CDS |
| TGCCAAATACACCATATTGG+TGG | 0.542586 | 5.2:-599361 | MS.gene40173:CDS |
| ATAGGGTTGTTCAAATATGG+AGG | 0.543202 | 5.2:-595838 | MS.gene40173:CDS |
| ATTATATCTTCATAAAGCCT+AGG | 0.544553 | 5.2:+595877 | None:intergenic |
| CTTCCTATTTATAATATATG+GGG | 0.545294 | 5.2:-599756 | MS.gene40173:CDS |
| GCTTGTTCAGTTGGAGCCAA+AGG | 0.549454 | 5.2:-596031 | MS.gene40173:CDS |
| GATTGGACAGACCAAGTGCT+TGG | 0.552501 | 5.2:-595694 | MS.gene40173:CDS |
| ATAGGGGACTCAAGAATTAA+GGG | 0.555298 | 5.2:-596126 | MS.gene40173:CDS |
| ATGAATTTGCCGATGTAACA+TGG | 0.558719 | 5.2:-598105 | MS.gene40173:CDS |
| AAGCATTTGCAGAGCTAGCA+AGG | 0.561569 | 5.2:-599642 | MS.gene40173:CDS |
| GCAGAATCTATAAGGATGCA+AGG | 0.571200 | 5.2:-595561 | MS.gene40173:CDS |
| AGGTGTTGAGCGAAGTCCAA+TGG | 0.576754 | 5.2:+598003 | None:intergenic |
| AGCCCTGCAGAATGTGAAGA+TGG | 0.584233 | 5.2:-599236 | MS.gene40173:CDS |
| ATGTGAAGATGGATATGCTA+AGG | 0.584411 | 5.2:-599225 | MS.gene40173:CDS |
| ATTGAGAGAGATCATTAATG+AGG | 0.592754 | 5.2:-599405 | MS.gene40173:CDS |
| ATTGGTGGCCTAATTAGCAC+TGG | 0.597316 | 5.2:-599329 | MS.gene40173:CDS |
| TGATATGAGCTCCGCCTCTG+TGG | 0.597346 | 5.2:+599607 | None:intergenic |
| TTGACCACTGAAACATTGGC+AGG | 0.598407 | 5.2:-597371 | MS.gene40173:CDS |
| AAGATGGATGTGCATTGGAA+GGG | 0.602495 | 5.2:-595645 | MS.gene40173:CDS |
| ATGTAAGAGATCGCTTGAAG+AGG | 0.606639 | 5.2:+598185 | None:intergenic |
| TAGGGTTGTTCAAATATGGA+GGG | 0.607320 | 5.2:-595837 | MS.gene40173:CDS |
| CCAAATACACCATATTGGTG+GGG | 0.608182 | 5.2:-599359 | MS.gene40173:CDS |
| AGATCATTAATGAGGCTGCA+AGG | 0.609352 | 5.2:-599397 | MS.gene40173:CDS |
| TGCAGCCAGAATTTCTTTAG+GGG | 0.610090 | 5.2:-599168 | MS.gene40173:CDS |
| GTGCTCATGGAAGTACATTG+TGG | 0.613279 | 5.2:-599307 | MS.gene40173:CDS |
| CTCTGCAAATGCTTCGATCG+GGG | 0.613508 | 5.2:+599651 | None:intergenic |
| TATGGATTGTCTAATAACAA+TGG | 0.616435 | 5.2:-597341 | MS.gene40173:intron |
| ATTTGGATACCATGTTACAT+CGG | 0.618948 | 5.2:+598096 | None:intergenic |
| TGTCAAATTGTTGAGAATGA+CGG | 0.619117 | 5.2:-599444 | MS.gene40173:CDS |
| CACTGAATTGGATCTGCTGG+AGG | 0.620282 | 5.2:+599722 | None:intergenic |
| AATGCCTGCCAATGTTTCAG+TGG | 0.623086 | 5.2:+597367 | None:intergenic |
| ATAGAAATGTAGGATTTGTG+GGG | 0.623934 | 5.2:-595795 | MS.gene40173:CDS |
| ATGTGTTACATACTCATGCA+CGG | 0.628045 | 5.2:+599271 | None:intergenic |
| CAGAATCTATAAGGATGCAA+GGG | 0.628326 | 5.2:-595560 | MS.gene40173:CDS |
| GCAAGTGTTAATGTGGCCGA+AGG | 0.628687 | 5.2:+597983 | None:intergenic |
| AGTGCTAATTAGGCCACCAA+TGG | 0.631088 | 5.2:+599331 | None:intergenic |
| ATCCATCTTCACATTCTGCA+GGG | 0.631851 | 5.2:+599234 | None:intergenic |
| TCGGTTGTTGAATCCAACAA+CGG | 0.632919 | 5.2:+596206 | None:intergenic |
| ACAACTTCTAGGGCATACTT+GGG | 0.636507 | 5.2:-595961 | MS.gene40173:CDS |
| TAGAAATGTAGGATTTGTGG+GGG | 0.638234 | 5.2:-595794 | MS.gene40173:CDS |
| GAAGCAACACACGATACTAA+CGG | 0.640574 | 5.2:-597413 | MS.gene40173:CDS |
| TTGAGAATGACGGTAGCGAG+CGG | 0.640697 | 5.2:-599434 | MS.gene40173:CDS |
| AATGAGCACAGCTTGTATAG+GGG | 0.645893 | 5.2:-596142 | MS.gene40173:CDS |
| AGTTCTAGCAAGTGTTAATG+TGG | 0.647109 | 5.2:+597976 | None:intergenic |
| CACGCCATATGAATTCGTGA+TGG | 0.651634 | 5.2:+599676 | None:intergenic |
| TATGTATCCAACCACAGAGG+CGG | 0.656615 | 5.2:-599618 | MS.gene40173:CDS |
| TATGGAGGGTTACCCCATTG+GGG | 0.660407 | 5.2:-595823 | MS.gene40173:CDS |
| GTAAGAGATCGCTTGAAGAG+GGG | 0.684242 | 5.2:+598187 | None:intergenic |
| GAGTCAATGGATCTTTGCTG+CGG | 0.690316 | 5.2:+595899 | None:intergenic |
| TTGGAGCCAAAGGCACTGTG+TGG | 0.693379 | 5.2:-596021 | MS.gene40173:CDS |
| ACAACCGAATACAATCATCA+GGG | 0.704131 | 5.2:-596191 | MS.gene40173:CDS |
| GCTCATGGAAGTACATTGTG+GGG | 0.748013 | 5.2:-599305 | MS.gene40173:CDS |
| TGTGGCTTAGAATTGTACAA+CGG | 0.755826 | 5.2:-596003 | MS.gene40173:CDS |
| GGTTATGTATCCAACCACAG+AGG | 0.789941 | 5.2:-599621 | MS.gene40173:CDS |
| GGTTGTTGAATCCAACAACG+GGG | 0.798806 | 5.2:+596208 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAACTAATAATATTCTA+AGG | - | chr5.2:598782-598801 | MS.gene40173:intron | 10.0% |
| !!! | AATTTTTGTTAAAAAAAATG+GGG | - | chr5.2:598970-598989 | MS.gene40173:intron | 10.0% |
| !!! | GAATTTTTGTTAAAAAAAAT+GGG | - | chr5.2:598969-598988 | MS.gene40173:intron | 10.0% |
| !!! | TGAATTTTTGTTAAAAAAAA+TGG | - | chr5.2:598968-598987 | MS.gene40173:intron | 10.0% |
| !! | AAAAATATAATAAGGCAAAT+AGG | - | chr5.2:599584-599603 | MS.gene40173:CDS | 15.0% |
| !! | ACATTGATATTATTAATAAC+AGG | - | chr5.2:598647-598666 | MS.gene40173:intron | 15.0% |
| !! | ATAATATCAATAAAATTTCG+TGG | + | chr5.2:596810-596829 | None:intergenic | 15.0% |
| !! | ATCTTCCTATTTATAATATA+TGG | - | chr5.2:595591-595610 | MS.gene40173:CDS | 15.0% |
| !! | GGCAATAAAAAAATATAATA+AGG | - | chr5.2:599576-599595 | MS.gene40173:CDS | 15.0% |
| !! | TCTTCCTATTTATAATATAT+GGG | - | chr5.2:595592-595611 | MS.gene40173:CDS | 15.0% |
| !! | TGAAAATGATCATATAAAAA+GGG | + | chr5.2:598503-598522 | None:intergenic | 15.0% |
| !! | TTAAACATATTTATACACAA+AGG | + | chr5.2:598603-598622 | None:intergenic | 15.0% |
| !! | TTGAAAATGATCATATAAAA+AGG | + | chr5.2:598504-598523 | None:intergenic | 15.0% |
| !! | TTTGTGGAATATATAATATA+TGG | - | chr5.2:596511-596530 | MS.gene40173:intron | 15.0% |
| !!! | ATAACAATTTTAACTTTCTA+TGG | + | chr5.2:597862-597881 | None:intergenic | 15.0% |
| !!! | TTTTTTGAAATAAAGTCATA+TGG | + | chr5.2:598330-598349 | None:intergenic | 15.0% |
| !! | ACAAAAAATGATTCTGATTT+GGG | - | chr5.2:597192-597211 | MS.gene40173:intron | 20.0% |
| !! | ACTTATTAAGATGAATAAGT+GGG | + | chr5.2:598098-598117 | None:intergenic | 20.0% |
| !! | ATACTATATAAGGAAATACT+GGG | - | chr5.2:596839-596858 | MS.gene40173:intron | 20.0% |
| !! | CTTCCTATTTATAATATATG+GGG | - | chr5.2:595593-595612 | MS.gene40173:CDS | 20.0% |
| !! | TACGTGTAATATACTATATA+AGG | - | chr5.2:596829-596848 | MS.gene40173:intron | 20.0% |
| !! | TACTAGAAATACAAAACAAA+AGG | + | chr5.2:596234-596253 | None:intergenic | 20.0% |
| !! | TATACACAAAGGATAAAATT+TGG | + | chr5.2:598592-598611 | None:intergenic | 20.0% |
| !! | TATACTATATAAGGAAATAC+TGG | - | chr5.2:596838-596857 | MS.gene40173:intron | 20.0% |
| !! | TTACCCCATATATTATAAAT+AGG | + | chr5.2:595599-595618 | None:intergenic | 20.0% |
| !! | TTATACTTCCAAAATAACTT+AGG | - | chr5.2:596418-596437 | MS.gene40173:intron | 20.0% |
| !! | TTATATATTCCACAAAAGTT+TGG | + | chr5.2:596507-596526 | None:intergenic | 20.0% |
| !! | TTATTAATAACAGGTGTATT+TGG | - | chr5.2:598656-598675 | MS.gene40173:intron | 20.0% |
| !! | TTTGGAAAACAAGTAATAAA+CGG | - | chr5.2:598674-598693 | MS.gene40173:intron | 20.0% |
| !!! | AAATACAATGACTTTTAGAA+TGG | + | chr5.2:598047-598066 | None:intergenic | 20.0% |
| !!! | AAGATAAGTGTTGAATTTAA+AGG | - | chr5.2:596911-596930 | MS.gene40173:intron | 20.0% |
| !!! | AAGTATTTTACAGTAGTTAA+GGG | + | chr5.2:599280-599299 | None:intergenic | 20.0% |
| !!! | AATACAATGACTTTTAGAAT+GGG | + | chr5.2:598046-598065 | None:intergenic | 20.0% |
| !!! | ATTACCACTTACTATTTTAT+AGG | - | chr5.2:597122-597141 | MS.gene40173:intron | 20.0% |
| !!! | TGTAAATAGTCTTATAATTG+TGG | - | chr5.2:598744-598763 | MS.gene40173:intron | 20.0% |
| !!! | TTTTTTGTAGGAACATTTAT+TGG | - | chr5.2:599115-599134 | MS.gene40173:intron | 20.0% |
| ! | AAATAGAAATGTAGGATTTG+TGG | - | chr5.2:599552-599571 | MS.gene40173:CDS | 25.0% |
| ! | AAATAGGAAGATAAAAAGAG+TGG | + | chr5.2:595583-595602 | None:intergenic | 25.0% |
| ! | AATAGAAATGTAGGATTTGT+GGG | - | chr5.2:599553-599572 | MS.gene40173:CDS | 25.0% |
| ! | AATGGTTTATATGATTCCAT+TGG | - | chr5.2:597330-597349 | MS.gene40173:intron | 25.0% |
| ! | AATGTGTAAAAAGAAGAGTA+TGG | - | chr5.2:596669-596688 | MS.gene40173:intron | 25.0% |
| ! | ACAAGTAAATCAATCCAAAT+GGG | - | chr5.2:598914-598933 | MS.gene40173:intron | 25.0% |
| ! | ATCTTGAGTTAAAATATTGG+GGG | - | chr5.2:596479-596498 | MS.gene40173:intron | 25.0% |
| ! | ATTATATCTTCATAAAGCCT+AGG | + | chr5.2:599475-599494 | None:intergenic | 25.0% |
| ! | ATTGAAGAGATAGAACAAAT+AGG | - | chr5.2:599493-599512 | MS.gene40173:CDS | 25.0% |
| ! | CAAGTATTAAGAAAAGTTCT+TGG | - | chr5.2:598531-598550 | MS.gene40173:intron | 25.0% |
| ! | CACTTATTAAGATGAATAAG+TGG | + | chr5.2:598099-598118 | None:intergenic | 25.0% |
| ! | CCAGTTGTTAATAATTGTTA+CGG | + | chr5.2:596550-596569 | None:intergenic | 25.0% |
| ! | CTAAGGTCATAATAATAACA+TGG | - | chr5.2:598799-598818 | MS.gene40173:intron | 25.0% |
| ! | CTTATTAAGATGAATAAGTG+GGG | + | chr5.2:598097-598116 | None:intergenic | 25.0% |
| ! | GACAAAAAATGATTCTGATT+TGG | - | chr5.2:597191-597210 | MS.gene40173:intron | 25.0% |
| ! | GATCTTGAGTTAAAATATTG+GGG | - | chr5.2:596478-596497 | MS.gene40173:intron | 25.0% |
| ! | GGATCTTGAGTTAAAATATT+GGG | - | chr5.2:596477-596496 | MS.gene40173:intron | 25.0% |
| ! | GTAACCTATAAAATAGTAAG+TGG | + | chr5.2:597129-597148 | None:intergenic | 25.0% |
| ! | TACTATATAAGGAAATACTG+GGG | - | chr5.2:596840-596859 | MS.gene40173:intron | 25.0% |
| ! | TCTGTAAATACATTTGGAAA+TGG | - | chr5.2:597312-597331 | MS.gene40173:intron | 25.0% |
| ! | TGTCATAAAAATAAGTCACA+TGG | + | chr5.2:598361-598380 | None:intergenic | 25.0% |
| ! | TTATTTGATGAACACTGAAT+TGG | + | chr5.2:595642-595661 | None:intergenic | 25.0% |
| ! | TTGAAGAGATAGAACAAATA+GGG | - | chr5.2:599494-599513 | MS.gene40173:CDS | 25.0% |
| !! | ATGTGTAAAAAGAAGAGTAT+GGG | - | chr5.2:596670-596689 | MS.gene40173:intron | 25.0% |
| !! | ATTGTTGTTGTTATTAACAG+AGG | - | chr5.2:597905-597924 | MS.gene40173:intron | 25.0% |
| !! | TATGGATTGTCTAATAACAA+TGG | - | chr5.2:598008-598027 | MS.gene40173:CDS | 25.0% |
| !!! | AGATCTATACTTTTAAGATC+TGG | - | chr5.2:596393-596412 | MS.gene40173:intron | 25.0% |
| !!! | AGTGCAATTTGATTTTTTGT+AGG | - | chr5.2:599103-599122 | MS.gene40173:intron | 25.0% |
| !!! | ATTTCTATTTTTTCCCCAAT+GGG | + | chr5.2:599542-599561 | None:intergenic | 25.0% |
| !!! | GAAGTATTTTACAGTAGTTA+AGG | + | chr5.2:599281-599300 | None:intergenic | 25.0% |
| AAACGGATCTAGAAATTTGT+AGG | - | chr5.2:598691-598710 | MS.gene40173:intron | 30.0% | |
| AAGTCTAGTAGTAAAAACAG+TGG | - | chr5.2:596453-596472 | MS.gene40173:intron | 30.0% | |
| AATGCTGTATCGTAATTGAA+TGG | + | chr5.2:599250-599269 | None:intergenic | 30.0% | |
| ACTATATAAGGAAATACTGG+GGG | - | chr5.2:596841-596860 | MS.gene40173:intron | 30.0% | |
| ATAGAAATGTAGGATTTGTG+GGG | - | chr5.2:599554-599573 | MS.gene40173:CDS | 30.0% | |
| ATGGTATCCAAATCAACAAA+AGG | - | chr5.2:597263-597282 | MS.gene40173:intron | 30.0% | |
| ATTAAAAAAGAACGTGCATG+AGG | + | chr5.2:596626-596645 | None:intergenic | 30.0% | |
| ATTAAAAGATGGATGTGCAT+TGG | - | chr5.2:599699-599718 | MS.gene40173:CDS | 30.0% | |
| ATTAGTAGTCCATTATCATC+AGG | + | chr5.2:595849-595868 | None:intergenic | 30.0% | |
| ATTGAGAGAGATCATTAATG+AGG | - | chr5.2:595944-595963 | MS.gene40173:CDS | 30.0% | |
| ATTTGGATACCATGTTACAT+CGG | + | chr5.2:597256-597275 | None:intergenic | 30.0% | |
| CAAATAGGGTTGTTCAAATA+TGG | - | chr5.2:599508-599527 | MS.gene40173:CDS | 30.0% | |
| CACAAGTAAATCAATCCAAA+TGG | - | chr5.2:598913-598932 | MS.gene40173:intron | 30.0% | |
| CCGTAACAATTATTAACAAC+TGG | - | chr5.2:596547-596566 | MS.gene40173:intron | 30.0% | |
| CGGATCTTGAGTTAAAATAT+TGG | - | chr5.2:596476-596495 | MS.gene40173:intron | 30.0% | |
| GGAGTGACAATATTAAAAGA+TGG | - | chr5.2:599688-599707 | MS.gene40173:CDS | 30.0% | |
| GTTCGAACTAAGTATTTAGA+AGG | + | chr5.2:598226-598245 | None:intergenic | 30.0% | |
| TGGGGAAAAAATAGAAATGT+AGG | - | chr5.2:599544-599563 | MS.gene40173:CDS | 30.0% | |
| TGTCAAATTGTTGAGAATGA+CGG | - | chr5.2:595905-595924 | MS.gene40173:CDS | 30.0% | |
| TTAAAAAAGAACGTGCATGA+GGG | + | chr5.2:596625-596644 | None:intergenic | 30.0% | |
| TTTATAGGTTACCCTACAAT+TGG | - | chr5.2:597137-597156 | MS.gene40173:intron | 30.0% | |
| ! | ACACTTATCTTTTTACTCAG+TGG | + | chr5.2:596902-596921 | None:intergenic | 30.0% |
| ! | GGTGATGAATTGATTACTTT+TGG | - | chr5.2:597213-597232 | MS.gene40173:intron | 30.0% |
| ! | TAAGGCAAATAGGTTTTTGA+AGG | - | chr5.2:599594-599613 | MS.gene40173:CDS | 30.0% |
| ! | TGTTAAAAAGCTTGTTCAGT+TGG | - | chr5.2:599309-599328 | MS.gene40173:CDS | 30.0% |
| ! | TTAGTGTGCCTAAGTTATTT+TGG | + | chr5.2:596429-596448 | None:intergenic | 30.0% |
| ! | TTGGATTGATTTACTTGTGT+TGG | + | chr5.2:598912-598931 | None:intergenic | 30.0% |
| !! | TAAAGAGCCTTTTGTTGATT+TGG | + | chr5.2:597273-597292 | None:intergenic | 30.0% |
| !! | TACAAGTTACACTCTAGTTT+TGG | - | chr5.2:597072-597091 | MS.gene40173:intron | 30.0% |
| !! | TCACTTGTGTCTGAAATTTT+TGG | - | chr5.2:596949-596968 | MS.gene40173:intron | 30.0% |
| !!! | ACAAGTTACACTCTAGTTTT+GGG | - | chr5.2:597073-597092 | MS.gene40173:intron | 30.0% |
| !!! | CATTTCTATTTTTTCCCCAA+TGG | + | chr5.2:599543-599562 | None:intergenic | 30.0% |
| !!! | GACTTATTTTGAAACCCATT+TGG | + | chr5.2:598931-598950 | None:intergenic | 30.0% |
| !!! | TTTCTATTTTTTCCCCAATG+GGG | + | chr5.2:599541-599560 | None:intergenic | 30.0% |
| AAAGTTGACCACTGAAACAT+TGG | - | chr5.2:597974-597993 | MS.gene40173:CDS | 35.0% | |
| AAATGAGCACAGCTTGTATA+GGG | - | chr5.2:599206-599225 | MS.gene40173:CDS | 35.0% | |
| AACAACCGAATACAATCATC+AGG | - | chr5.2:599157-599176 | MS.gene40173:CDS | 35.0% | |
| AAGAACCCCTAAAGAAATTC+TGG | + | chr5.2:596189-596208 | None:intergenic | 35.0% | |
| AATGCAGCCAGAATTTCTTT+AGG | - | chr5.2:596179-596198 | MS.gene40173:CDS | 35.0% | |
| ACAACCGAATACAATCATCA+GGG | - | chr5.2:599158-599177 | MS.gene40173:CDS | 35.0% | |
| ACAATTATTAACAACTGGCC+TGG | - | chr5.2:596552-596571 | MS.gene40173:intron | 35.0% | |
| ATAGGGGACTCAAGAATTAA+GGG | - | chr5.2:599223-599242 | MS.gene40173:CDS | 35.0% | |
| ATGAATTTGCCGATGTAACA+TGG | - | chr5.2:597244-597263 | MS.gene40173:intron | 35.0% | |
| ATGCAGCCAGAATTTCTTTA+GGG | - | chr5.2:596180-596199 | MS.gene40173:CDS | 35.0% | |
| ATGTCCCTGATGATTGTATT+CGG | + | chr5.2:599165-599184 | None:intergenic | 35.0% | |
| ATGTGAAGATGGATATGCTA+AGG | - | chr5.2:596124-596143 | MS.gene40173:CDS | 35.0% | |
| ATGTGTTACATACTCATGCA+CGG | + | chr5.2:596081-596100 | None:intergenic | 35.0% | |
| CAAGTGCTTGGACTTAAAAA+AGG | - | chr5.2:599667-599686 | MS.gene40173:CDS | 35.0% | |
| CAGAATCTATAAGGATGCAA+GGG | - | chr5.2:599789-599808 | MS.gene40173:CDS | 35.0% | |
| CGTGTCTCTGTAAATACATT+TGG | - | chr5.2:597306-597325 | MS.gene40173:intron | 35.0% | |
| GCGTTATGTTACAACTTCTA+GGG | - | chr5.2:599378-599397 | MS.gene40173:CDS | 35.0% | |
| TAAAAAAGAACGTGCATGAG+GGG | + | chr5.2:596624-596643 | None:intergenic | 35.0% | |
| TAGAAATGTAGGATTTGTGG+GGG | - | chr5.2:599555-599574 | MS.gene40173:CDS | 35.0% | |
| TATAGGGGACTCAAGAATTA+AGG | - | chr5.2:599222-599241 | MS.gene40173:CDS | 35.0% | |
| TCACACTCTCACTTAATGAA+TGG | - | chr5.2:598152-598171 | MS.gene40173:CDS | 35.0% | |
| TCACTAGAGAAAAGTCTCTT+CGG | + | chr5.2:599637-599656 | None:intergenic | 35.0% | |
| TCTAGTAGTAAAAACAGTGG+CGG | - | chr5.2:596456-596475 | MS.gene40173:intron | 35.0% | |
| TGCGTTATGTTACAACTTCT+AGG | - | chr5.2:599377-599396 | MS.gene40173:CDS | 35.0% | |
| TGTGGCTTAGAATTGTACAA+CGG | - | chr5.2:599346-599365 | MS.gene40173:CDS | 35.0% | |
| ! | AGAATTTCTTTAGGGGTTCT+TGG | - | chr5.2:596188-596207 | MS.gene40173:CDS | 35.0% |
| ! | AGAGACTTTTCTCTAGTGAT+TGG | - | chr5.2:599638-599657 | MS.gene40173:CDS | 35.0% |
| ! | AGTTCTAGCAAGTGTTAATG+TGG | + | chr5.2:597376-597395 | None:intergenic | 35.0% |
| ! | CTTATCTTTTTACTCAGTGG+CGG | + | chr5.2:596899-596918 | None:intergenic | 35.0% |
| ! | TTAACACTTGCTAGAACTAC+AGG | - | chr5.2:597378-597397 | MS.gene40173:CDS | 35.0% |
| !!! | CTGCAGAAGTAGTTCTTTTT+TGG | + | chr5.2:599763-599782 | None:intergenic | 35.0% |
| !!! | CTTTTTTAAGTCCAAGCACT+TGG | + | chr5.2:599669-599688 | None:intergenic | 35.0% |
| !!! | TGACATCGATTTTCAACACA+CGG | + | chr5.2:595890-595909 | None:intergenic | 35.0% |
| AAAGATGGATGTGCATTGGA+AGG | - | chr5.2:599703-599722 | MS.gene40173:CDS | 40.0% | |
| AAATTGCCTGGAAACAGCAA+GGG | - | chr5.2:596581-596600 | MS.gene40173:intron | 40.0% | |
| AAGATGGATGTGCATTGGAA+GGG | - | chr5.2:599704-599723 | MS.gene40173:CDS | 40.0% | |
| AATGAGCACAGCTTGTATAG+GGG | - | chr5.2:599207-599226 | MS.gene40173:CDS | 40.0% | |
| ACAATCATCAGGGACATGTT+TGG | - | chr5.2:599168-599187 | MS.gene40173:CDS | 40.0% | |
| AGATCATTAATGAGGCTGCA+AGG | - | chr5.2:595952-595971 | MS.gene40173:CDS | 40.0% | |
| AGGGACATGTTTGGATAGTT+TGG | - | chr5.2:599177-599196 | MS.gene40173:CDS | 40.0% | |
| ATAAGGATGCAAGGGTTTGT+AGG | - | chr5.2:599797-599816 | MS.gene40173:CDS | 40.0% | |
| ATCCATCTTCACATTCTGCA+GGG | + | chr5.2:596118-596137 | None:intergenic | 40.0% | |
| ATGGTTAAACCCCACCAATA+TGG | + | chr5.2:596002-596021 | None:intergenic | 40.0% | |
| ATGTAAGAGATCGCTTGAAG+AGG | + | chr5.2:597167-597186 | None:intergenic | 40.0% | |
| CAAATGAGCACAGCTTGTAT+AGG | - | chr5.2:599205-599224 | MS.gene40173:CDS | 40.0% | |
| CACTCCCAAGCTAAAGATAT+CGG | + | chr5.2:597837-597856 | None:intergenic | 40.0% | |
| CCAAATACACCATATTGGTG+GGG | - | chr5.2:595990-596009 | MS.gene40173:CDS | 40.0% | |
| CTCTGCCAAATACACCATAT+TGG | - | chr5.2:595985-596004 | MS.gene40173:CDS | 40.0% | |
| GAAGCAACACACGATACTAA+CGG | - | chr5.2:597936-597955 | MS.gene40173:intron | 40.0% | |
| GCAGAATCTATAAGGATGCA+AGG | - | chr5.2:599788-599807 | MS.gene40173:CDS | 40.0% | |
| GCCAAATACACCATATTGGT+GGG | - | chr5.2:595989-596008 | MS.gene40173:CDS | 40.0% | |
| TATCCATCTTCACATTCTGC+AGG | + | chr5.2:596119-596138 | None:intergenic | 40.0% | |
| TATCGAACCTGATACTTGAG+AGG | - | chr5.2:598866-598885 | MS.gene40173:intron | 40.0% | |
| TATTGGTGGGGTTTAACCAT+TGG | - | chr5.2:596002-596021 | MS.gene40173:CDS | 40.0% | |
| TCATAAAGCCTAGGAGTCAA+TGG | + | chr5.2:599466-599485 | None:intergenic | 40.0% | |
| TCGGTTGTTGAATCCAACAA+CGG | + | chr5.2:599146-599165 | None:intergenic | 40.0% | |
| TGCACCATCACGAATTCATA+TGG | - | chr5.2:595669-595688 | MS.gene40173:CDS | 40.0% | |
| TGCAGCCAGAATTTCTTTAG+GGG | - | chr5.2:596181-596200 | MS.gene40173:CDS | 40.0% | |
| TGCCAAATACACCATATTGG+TGG | - | chr5.2:595988-596007 | MS.gene40173:CDS | 40.0% | |
| TGTAAGAGATCGCTTGAAGA+GGG | + | chr5.2:597166-597185 | None:intergenic | 40.0% | |
| TTTATTGGATACCCCGTTGT+TGG | - | chr5.2:599130-599149 | MS.gene40173:intron | 40.0% | |
| ! | ATTATTAACAACTGGCCTGG+TGG | - | chr5.2:596555-596574 | MS.gene40173:intron | 40.0% |
| ! | CTAGCTTGTCCTGATGATAA+TGG | - | chr5.2:595837-595856 | MS.gene40173:CDS | 40.0% |
| ! | TGCTCATGGAAGTACATTGT+GGG | - | chr5.2:596043-596062 | MS.gene40173:CDS | 40.0% |
| ! | TTCTGGCTGCATTAAGATCT+TGG | + | chr5.2:596172-596191 | None:intergenic | 40.0% |
| !! | ACAACTTCTAGGGCATACTT+GGG | - | chr5.2:599388-599407 | MS.gene40173:CDS | 40.0% |
| !! | GGTTCTTGGAGTTATTTCTC+AGG | - | chr5.2:596202-596221 | MS.gene40173:CDS | 40.0% |
| !! | TACAACTTCTAGGGCATACT+TGG | - | chr5.2:599387-599406 | MS.gene40173:CDS | 40.0% |
| AAGAACTACTTCTGCAGACC+AGG | - | chr5.2:599766-599785 | MS.gene40173:CDS | 45.0% | |
| AAGCATTTGCAGAGCTAGCA+AGG | - | chr5.2:595707-595726 | MS.gene40173:CDS | 45.0% | |
| AATGCCTGCCAATGTTTCAG+TGG | + | chr5.2:597985-598004 | None:intergenic | 45.0% | |
| ACCGACCGATATCTTTAGCT+TGG | - | chr5.2:597829-597848 | MS.gene40173:intron | 45.0% | |
| AGCTCTGCAAATGCTTCGAT+CGG | + | chr5.2:595703-595722 | None:intergenic | 45.0% | |
| AGTGCTAATTAGGCCACCAA+TGG | + | chr5.2:596021-596040 | None:intergenic | 45.0% | |
| CAAATTGCCTGGAAACAGCA+AGG | - | chr5.2:596580-596599 | MS.gene40173:intron | 45.0% | |
| CACGCCATATGAATTCGTGA+TGG | + | chr5.2:595676-595695 | None:intergenic | 45.0% | |
| CAGACCAGGCAGAATCTATA+AGG | - | chr5.2:599780-599799 | MS.gene40173:CDS | 45.0% | |
| CATGAGCACCAGTGCTAATT+AGG | + | chr5.2:596031-596050 | None:intergenic | 45.0% | |
| CCCAAGCTAAAGATATCGGT+CGG | + | chr5.2:597833-597852 | None:intergenic | 45.0% | |
| CCCCACCAATATGGTGTATT+TGG | + | chr5.2:595993-596012 | None:intergenic | 45.0% | |
| CGGTTGTTGAATCCAACAAC+GGG | + | chr5.2:599145-599164 | None:intergenic | 45.0% | |
| GAACACTGAATTGGATCTGC+TGG | + | chr5.2:595633-595652 | None:intergenic | 45.0% | |
| GAAGAGGGGTTCCAATTGTA+GGG | + | chr5.2:597151-597170 | None:intergenic | 45.0% | |
| GAGTCAATGGATCTTTGCTG+CGG | + | chr5.2:599453-599472 | None:intergenic | 45.0% | |
| GAGTCATCCTCTCAAGTATC+AGG | + | chr5.2:598876-598895 | None:intergenic | 45.0% | |
| GCATCCTTATAGATTCTGCC+TGG | + | chr5.2:599787-599806 | None:intergenic | 45.0% | |
| GGGAAAAACAGAAGATGCTG+TGG | - | chr5.2:599408-599427 | MS.gene40173:CDS | 45.0% | |
| GGTTATGTATCCAACCACAG+AGG | - | chr5.2:595728-595747 | MS.gene40173:CDS | 45.0% | |
| GGTTGTTGAATCCAACAACG+GGG | + | chr5.2:599144-599163 | None:intergenic | 45.0% | |
| GTAAGAGATCGCTTGAAGAG+GGG | + | chr5.2:597165-597184 | None:intergenic | 45.0% | |
| TATGTATCCAACCACAGAGG+CGG | - | chr5.2:595731-595750 | MS.gene40173:CDS | 45.0% | |
| TGAAGAGGGGTTCCAATTGT+AGG | + | chr5.2:597152-597171 | None:intergenic | 45.0% | |
| TGAGGCTGCAAGGTTTGAAA+TGG | - | chr5.2:595962-595981 | MS.gene40173:CDS | 45.0% | |
| TGGAAACAGCAAGGGAACAT+GGG | - | chr5.2:596589-596608 | MS.gene40173:intron | 45.0% | |
| TTGACCACTGAAACATTGGC+AGG | - | chr5.2:597978-597997 | MS.gene40173:CDS | 45.0% | |
| ! | ACATTGGCAGGCATTGCTTA+TGG | - | chr5.2:597990-598009 | MS.gene40173:CDS | 45.0% |
| ! | ATTGGTGGCCTAATTAGCAC+TGG | - | chr5.2:596020-596039 | MS.gene40173:CDS | 45.0% |
| ! | CCGACCGATATCTTTAGCTT+GGG | - | chr5.2:597830-597849 | MS.gene40173:intron | 45.0% |
| ! | GCTCATGGAAGTACATTGTG+GGG | - | chr5.2:596044-596063 | MS.gene40173:CDS | 45.0% |
| ! | GGAAGTACATTGTGGGGTAA+AGG | - | chr5.2:596050-596069 | MS.gene40173:CDS | 45.0% |
| ! | GTGCTCATGGAAGTACATTG+TGG | - | chr5.2:596042-596061 | MS.gene40173:CDS | 45.0% |
| ! | TCATCAGGACAAGCTAGCTT+TGG | + | chr5.2:595834-595853 | None:intergenic | 45.0% |
| !! | CGATATCTTTAGCTTGGGAG+TGG | - | chr5.2:597835-597854 | MS.gene40173:intron | 45.0% |
| !! | CTAATTAGCACTGGTGCTCA+TGG | - | chr5.2:596029-596048 | MS.gene40173:CDS | 45.0% |
| !! | GCAAAGATCCATTGACTCCT+AGG | - | chr5.2:599455-599474 | MS.gene40173:CDS | 45.0% |
| !!! | ATAAAATTTAATATATTTTG+AGG | + | chr5.2:598196-598215 | None:intergenic | 5.0% |
| !!! | ATAAGAAAAATATTATTTTA+TGG | + | chr5.2:597735-597754 | None:intergenic | 5.0% |
| AGAGGAATTGCCGAAGGTTG+CGG | + | chr5.2:596776-596795 | None:intergenic | 50.0% | |
| AGCCCTGCAGAATGTGAAGA+TGG | - | chr5.2:596113-596132 | MS.gene40173:CDS | 50.0% | |
| CACTGAATTGGATCTGCTGG+AGG | + | chr5.2:595630-595649 | None:intergenic | 50.0% | |
| CTCTGCAAATGCTTCGATCG+GGG | + | chr5.2:595701-595720 | None:intergenic | 50.0% | |
| CTGGAAACAGCAAGGGAACA+TGG | - | chr5.2:596588-596607 | MS.gene40173:intron | 50.0% | |
| GATTGGACAGACCAAGTGCT+TGG | - | chr5.2:599655-599674 | MS.gene40173:CDS | 50.0% | |
| GCAAGTGTTAATGTGGCCGA+AGG | + | chr5.2:597369-597388 | None:intergenic | 50.0% | |
| GCGAAAAGAGGAATTGCCGA+AGG | + | chr5.2:596782-596801 | None:intergenic | 50.0% | |
| GCTCTGCAAATGCTTCGATC+GGG | + | chr5.2:595702-595721 | None:intergenic | 50.0% | |
| GCTTGTTCAGTTGGAGCCAA+AGG | - | chr5.2:599318-599337 | MS.gene40173:CDS | 50.0% | |
| TCCAGGCAATTTGTACCACC+AGG | + | chr5.2:596573-596592 | None:intergenic | 50.0% | |
| TCTAAGCCACACAGTGCCTT+TGG | + | chr5.2:599337-599356 | None:intergenic | 50.0% | |
| TGGACTTCGCTCAACACCTT+CGG | - | chr5.2:597350-597369 | MS.gene40173:CDS | 50.0% | |
| TGGTGGGGTTTAACCATTGG+TGG | - | chr5.2:596005-596024 | MS.gene40173:CDS | 50.0% | |
| TTCGTGGCTTCAGCGAAAAG+AGG | + | chr5.2:596794-596813 | None:intergenic | 50.0% | |
| TTGAGAATGACGGTAGCGAG+CGG | - | chr5.2:595915-595934 | MS.gene40173:CDS | 50.0% | |
| ! | AGTGTTGAACCCGCAACCTT+CGG | - | chr5.2:596763-596782 | MS.gene40173:intron | 50.0% |
| !! | AGGTGTTGAGCGAAGTCCAA+TGG | + | chr5.2:597349-597368 | None:intergenic | 50.0% |
| !! | CATGTTCCCTTGCTGTTTCC+AGG | + | chr5.2:596590-596609 | None:intergenic | 50.0% |
| !! | TACTCAGTGGCGGATCTCTT+TGG | + | chr5.2:596889-596908 | None:intergenic | 50.0% |
| !!! | TTGGGGGTGCCAAACTTTTG+TGG | - | chr5.2:596495-596514 | MS.gene40173:intron | 50.0% |
| GAGGAATTGCCGAAGGTTGC+GGG | + | chr5.2:596775-596794 | None:intergenic | 55.0% | |
| GCCTGGTGGTACAAATTGCC+TGG | - | chr5.2:596569-596588 | MS.gene40173:intron | 55.0% | |
| TGATATGAGCTCCGCCTCTG+TGG | + | chr5.2:595745-595764 | None:intergenic | 55.0% | |
| !! | TCAGTGGCGGATCTCTTTGG+TGG | + | chr5.2:596886-596905 | None:intergenic | 55.0% |
| !! | TTGGAGCCAAAGGCACTGTG+TGG | - | chr5.2:599328-599347 | MS.gene40173:CDS | 55.0% |
| ATGAGCTCCGCCTCTGTGGT+TGG | + | chr5.2:595741-595760 | None:intergenic | 60.0% | |
| GGAAATACTGGGGGTTGCCG+TGG | - | chr5.2:596850-596869 | MS.gene40173:intron | 60.0% | |
| ! | TGGCGGATCTCTTTGGTGGC+GGG | + | chr5.2:596882-596901 | None:intergenic | 60.0% |
| !! | GTGGCGGATCTCTTTGGTGG+CGG | + | chr5.2:596883-596902 | None:intergenic | 60.0% |
| !! | ATCTCTTTGGTGGCGGGCGG+GGG | + | chr5.2:596876-596895 | None:intergenic | 65.0% |
| !! | CGGATCTCTTTGGTGGCGGG+CGG | + | chr5.2:596879-596898 | None:intergenic | 65.0% |
| !! | GATCTCTTTGGTGGCGGGCG+GGG | + | chr5.2:596877-596896 | None:intergenic | 65.0% |
| !! | GGATCTCTTTGGTGGCGGGC+GGG | + | chr5.2:596878-596897 | None:intergenic | 65.0% |
| !!! | TTGGTGGCGGGCGGGGGCCA+CGG | + | chr5.2:596870-596889 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 595534 | 599837 | 595534 | ID=MS.gene40173 |
| chr5.2 | mRNA | 595534 | 599837 | 595534 | ID=MS.gene40173.t1;Parent=MS.gene40173 |
| chr5.2 | exon | 599148 | 599837 | 599148 | ID=MS.gene40173.t1.exon1;Parent=MS.gene40173.t1 |
| chr5.2 | CDS | 599148 | 599837 | 599148 | ID=cds.MS.gene40173.t1;Parent=MS.gene40173.t1 |
| chr5.2 | exon | 597972 | 598227 | 597972 | ID=MS.gene40173.t1.exon2;Parent=MS.gene40173.t1 |
| chr5.2 | CDS | 597972 | 598227 | 597972 | ID=cds.MS.gene40173.t1;Parent=MS.gene40173.t1 |
| chr5.2 | exon | 597342 | 597446 | 597342 | ID=MS.gene40173.t1.exon3;Parent=MS.gene40173.t1 |
| chr5.2 | CDS | 597342 | 597446 | 597342 | ID=cds.MS.gene40173.t1;Parent=MS.gene40173.t1 |
| chr5.2 | exon | 595534 | 596246 | 595534 | ID=MS.gene40173.t1.exon4;Parent=MS.gene40173.t1 |
| chr5.2 | CDS | 595534 | 596246 | 595534 | ID=cds.MS.gene40173.t1;Parent=MS.gene40173.t1 |
| Gene Sequence |
| Protein sequence |
