Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44540.t1 | XP_003615974.1 | 98.8 | 839 | 10 | 0 | 1 | 839 | 155 | 993 | 0.00E+00 | 1540.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44540.t1 | O24303 | 86.2 | 840 | 115 | 1 | 1 | 839 | 157 | 996 | 0.0e+00 | 1364.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44540.t1 | G7KFK1 | 98.8 | 839 | 10 | 0 | 1 | 839 | 155 | 993 | 0.0e+00 | 1540.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene44540 | 0.811431 | 7.02E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene44540 | 0.860819 | 1.58E-63 | -1.69E-46 |
| MS.gene049382 | MS.gene44540 | 0.834467 | 2.95E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene44540 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene04987 | MS.gene44540 | 0.812849 | 3.45E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene44540 | 0.861455 | 1.01E-63 | -1.69E-46 |
| MS.gene050227 | MS.gene44540 | 0.852897 | 3.41E-61 | -1.69E-46 |
| MS.gene050228 | MS.gene44540 | 0.860024 | 2.75E-63 | -1.69E-46 |
| MS.gene050277 | MS.gene44540 | 0.810507 | 1.11E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene44540 | -0.844108 | 9.27E-59 | -1.69E-46 |
| MS.gene050642 | MS.gene44540 | 0.834136 | 3.57E-56 | -1.69E-46 |
| MS.gene050762 | MS.gene44540 | 0.804906 | 1.72E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene44540 | 0.805477 | 1.31E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene44540 | 0.805218 | 1.48E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene44540 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene44540 | 0.84452 | 7.19E-59 | -1.69E-46 |
| MS.gene051663 | MS.gene44540 | 0.866892 | 2.05E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene44540 | 0.805921 | 1.06E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene44540 | 0.807185 | 5.72E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene44540 | 0.815825 | 7.58E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene44540 | 0.82619 | 3.11E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene44540 | 0.822995 | 1.76E-53 | -1.69E-46 |
| MS.gene052600 | MS.gene44540 | 0.86478 | 9.50E-65 | -1.69E-46 |
| MS.gene052856 | MS.gene44540 | 0.830514 | 2.81E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene44540 | 0.807818 | 4.20E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene44540 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene052970 | MS.gene44540 | -0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene053080 | MS.gene44540 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene053437 | MS.gene44540 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene44540 | 0.817677 | 2.91E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene44540 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene44540 | 0.803324 | 3.68E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene44540 | 0.804831 | 1.79E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene44540 | 0.869698 | 2.55E-66 | -1.69E-46 |
| MS.gene055133 | MS.gene44540 | 0.802659 | 5.05E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene44540 | 0.808105 | 3.65E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene44540 | -0.813563 | 2.40E-51 | -1.69E-46 |
| MS.gene056552 | MS.gene44540 | 0.833806 | 4.32E-56 | -1.69E-46 |
| MS.gene056589 | MS.gene44540 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene44540 | 0.806489 | 8.03E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene44540 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene44540 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene44540 | 0.821851 | 3.24E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene44540 | 0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene44540 | 0.808901 | 2.47E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene44540 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene44540 | 0.818254 | 2.16E-52 | -1.69E-46 |
| MS.gene058833 | MS.gene44540 | 0.867872 | 9.94E-66 | -1.69E-46 |
| MS.gene058906 | MS.gene44540 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene058982 | MS.gene44540 | 0.819754 | 9.84E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene44540 | 0.814369 | 1.60E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene44540 | 0.807146 | 5.83E-50 | -1.69E-46 |
| MS.gene060165 | MS.gene44540 | 0.81754 | 3.13E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene44540 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene060619 | MS.gene44540 | 0.848803 | 4.85E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38065 | gene | 15659 | 23002 | 15659 | ID=MS.gene44540 |
| 38065 | mRNA | 15659 | 23002 | 15659 | ID=MS.gene44540.t1;Parent=MS.gene44540 |
| 38065 | exon | 15659 | 15718 | 15659 | ID=MS.gene44540.t1.exon1;Parent=MS.gene44540.t1 |
| 38065 | CDS | 15659 | 15718 | 15659 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 16054 | 16177 | 16054 | ID=MS.gene44540.t1.exon2;Parent=MS.gene44540.t1 |
| 38065 | CDS | 16054 | 16177 | 16054 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 16292 | 16360 | 16292 | ID=MS.gene44540.t1.exon3;Parent=MS.gene44540.t1 |
| 38065 | CDS | 16292 | 16360 | 16292 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 16480 | 16578 | 16480 | ID=MS.gene44540.t1.exon4;Parent=MS.gene44540.t1 |
| 38065 | CDS | 16480 | 16578 | 16480 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 16875 | 16941 | 16875 | ID=MS.gene44540.t1.exon5;Parent=MS.gene44540.t1 |
| 38065 | CDS | 16875 | 16941 | 16875 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 17332 | 17396 | 17332 | ID=MS.gene44540.t1.exon6;Parent=MS.gene44540.t1 |
| 38065 | CDS | 17332 | 17396 | 17332 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 17534 | 17628 | 17534 | ID=MS.gene44540.t1.exon7;Parent=MS.gene44540.t1 |
| 38065 | CDS | 17534 | 17628 | 17534 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 18355 | 18482 | 18355 | ID=MS.gene44540.t1.exon8;Parent=MS.gene44540.t1 |
| 38065 | CDS | 18355 | 18482 | 18355 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 18589 | 18689 | 18589 | ID=MS.gene44540.t1.exon9;Parent=MS.gene44540.t1 |
| 38065 | CDS | 18589 | 18689 | 18589 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 19448 | 19664 | 19448 | ID=MS.gene44540.t1.exon10;Parent=MS.gene44540.t1 |
| 38065 | CDS | 19448 | 19664 | 19448 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 20415 | 20569 | 20415 | ID=MS.gene44540.t1.exon11;Parent=MS.gene44540.t1 |
| 38065 | CDS | 20415 | 20569 | 20415 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 21478 | 21603 | 21478 | ID=MS.gene44540.t1.exon12;Parent=MS.gene44540.t1 |
| 38065 | CDS | 21478 | 21603 | 21478 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 21694 | 22668 | 21694 | ID=MS.gene44540.t1.exon13;Parent=MS.gene44540.t1 |
| 38065 | CDS | 21694 | 22668 | 21694 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| 38065 | exon | 22763 | 23002 | 22763 | ID=MS.gene44540.t1.exon14;Parent=MS.gene44540.t1 |
| 38065 | CDS | 22763 | 23002 | 22763 | ID=cds.MS.gene44540.t1;Parent=MS.gene44540.t1 |
| Gene Sequence |
| Protein sequence |
