Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47390.t1 | XP_003590416.1 | 98.4 | 579 | 9 | 0 | 80 | 658 | 80 | 658 | 2.70E-308 | 1067.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47390.t1 | F4I2J8 | 70.9 | 621 | 130 | 4 | 87 | 658 | 98 | 716 | 1.7e-231 | 803.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47390.t1 | G7IA50 | 98.4 | 579 | 9 | 0 | 80 | 658 | 80 | 658 | 1.9e-308 | 1067.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47390 | 0.810738 | 9.93E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene47390 | 0.811148 | 8.09E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene47390 | 0.807011 | 6.22E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene47390 | 0.808194 | 3.49E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene47390 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene47390 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene47390 | 0.805625 | 1.22E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene47390 | 0.812873 | 3.41E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene47390 | 0.800734 | 1.25E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene47390 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene47390 | -0.832466 | 9.30E-56 | -1.69E-46 |
| MS.gene053427 | MS.gene47390 | 0.802516 | 5.41E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene47390 | 0.804588 | 2.01E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene47390 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene47390 | 0.810874 | 9.28E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene47390 | 0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene056082 | MS.gene47390 | 0.801951 | 7.07E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene47390 | 0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene47390 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene47390 | 0.807051 | 6.10E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene47390 | 0.811003 | 8.70E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene47390 | 0.837672 | 4.53E-57 | -1.69E-46 |
| MS.gene057132 | MS.gene47390 | 0.807514 | 4.87E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene47390 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene47390 | 0.812527 | 4.05E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene47390 | 0.811803 | 5.83E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene47390 | 0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene058781 | MS.gene47390 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene47390 | 0.805677 | 1.19E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene47390 | 0.852535 | 4.33E-61 | -1.69E-46 |
| MS.gene059625 | MS.gene47390 | 0.812332 | 4.47E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene47390 | -0.815699 | 8.09E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene47390 | 0.843407 | 1.43E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene47390 | 0.835366 | 1.75E-56 | -1.69E-46 |
| MS.gene06094 | MS.gene47390 | 0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene47390 | 0.81201 | 5.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072740 | MS.gene47390 | PPI |
| MS.gene047123 | MS.gene47390 | PPI |
| MS.gene47390 | MS.gene22321 | PPI |
| MS.gene66321 | MS.gene47390 | PPI |
| MS.gene47390 | MS.gene66329 | PPI |
| MS.gene21651 | MS.gene47390 | PPI |
| MS.gene47390 | MS.gene071985 | PPI |
| MS.gene064051 | MS.gene47390 | PPI |
| MS.gene01671 | MS.gene47390 | PPI |
| MS.gene024669 | MS.gene47390 | PPI |
| MS.gene75072 | MS.gene47390 | PPI |
| MS.gene030285 | MS.gene47390 | PPI |
| MS.gene47390 | MS.gene002130 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47390.t1 | MTR_1g061860 | 97.720 | 658 | 15 | 0 | 1 | 658 | 1 | 658 | 0.0 | 1322 |
| MS.gene47390.t1 | MTR_7g102700 | 84.053 | 602 | 87 | 3 | 62 | 658 | 50 | 647 | 0.0 | 1043 |
| MS.gene47390.t1 | MTR_7g102700 | 83.582 | 603 | 89 | 2 | 62 | 658 | 50 | 648 | 0.0 | 1042 |
| MS.gene47390.t1 | MTR_7g102700 | 82.971 | 552 | 85 | 3 | 112 | 658 | 9 | 556 | 0.0 | 939 |
| MS.gene47390.t1 | MTR_7g102700 | 82.459 | 553 | 87 | 2 | 112 | 658 | 9 | 557 | 0.0 | 938 |
| MS.gene47390.t1 | MTR_0130s0060 | 67.347 | 49 | 16 | 0 | 76 | 124 | 182 | 230 | 6.30e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47390.t1 | AT1G03910 | 75.510 | 588 | 139 | 2 | 75 | 658 | 86 | 672 | 0.0 | 925 |
| MS.gene47390.t1 | AT1G03910 | 70.095 | 632 | 140 | 3 | 75 | 658 | 86 | 716 | 0.0 | 904 |
| MS.gene47390.t1 | AT2G36815 | 52.577 | 97 | 32 | 2 | 282 | 377 | 17 | 100 | 5.06e-21 | 89.0 |
| MS.gene47390.t1 | AT2G36815 | 53.125 | 96 | 31 | 2 | 283 | 377 | 24 | 106 | 5.61e-21 | 89.0 |
Find 158 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGCTTGCGTAACATTT+TGG | 0.170202 | 1.4:+51104111 | None:intergenic |
| TTCTTGACCCTCTGCTTTAA+TGG | 0.192895 | 1.4:+51103861 | None:intergenic |
| TGCAATACAGGCTTGTTTAA+AGG | 0.200086 | 1.4:-51104143 | MS.gene47390:intron |
| AGCTCAGTATTTGGCGAAAA+AGG | 0.258558 | 1.4:-51109048 | MS.gene47390:CDS |
| CCCTCTGCTTTAATGGGTTC+GGG | 0.271684 | 1.4:+51103868 | None:intergenic |
| ACCCTCTGCTTTAATGGGTT+CGG | 0.272032 | 1.4:+51103867 | None:intergenic |
| ATCAGAGGGTGAAGATAAAT+TGG | 0.274595 | 1.4:-51104071 | MS.gene47390:CDS |
| CGCCAACCCATGTAGAATAT+TGG | 0.284425 | 1.4:-51106084 | MS.gene47390:CDS |
| GTTGAAATACTTTGGTTTCC+TGG | 0.284593 | 1.4:+51102609 | None:intergenic |
| TCTTGATGGCTCTGATGATT+TGG | 0.289649 | 1.4:-51107177 | MS.gene47390:CDS |
| TGCAGAATTGGAAGCTTTGC+AGG | 0.295132 | 1.4:-51104350 | MS.gene47390:CDS |
| TCTTGACCCTCTGCTTTAAT+GGG | 0.310995 | 1.4:+51103862 | None:intergenic |
| CACTCCTTCTGGTGAGTGAT+TGG | 0.313594 | 1.4:-51104519 | MS.gene47390:CDS |
| ATGCTATTTGTAGGTTTGTT+TGG | 0.327045 | 1.4:-51108051 | MS.gene47390:intron |
| TGTGTCTTGTCTACAAGGTC+TGG | 0.329849 | 1.4:+51102481 | None:intergenic |
| ACGTGCTCGAGCTGAGTTCC+AGG | 0.339829 | 1.4:-51107393 | MS.gene47390:CDS |
| AATAGCTCCCATAACCTTCA+TGG | 0.340612 | 1.4:+51103543 | None:intergenic |
| CTTCATGCAGGCACTCCTTC+TGG | 0.341193 | 1.4:-51104530 | MS.gene47390:intron |
| GACTTACTTCTCATTAAGAT+TGG | 0.354150 | 1.4:+51108688 | None:intergenic |
| TCATCACCATGAAACAGTTC+TGG | 0.358787 | 1.4:+51103802 | None:intergenic |
| TTATACCCTTGTACAACCTT+TGG | 0.359525 | 1.4:+51102520 | None:intergenic |
| AGAGCAGCAGAGACGAATTC+AGG | 0.361317 | 1.4:-51103617 | MS.gene47390:CDS |
| CACCCTCTGATGGTTTCTTA+AGG | 0.361872 | 1.4:+51104083 | None:intergenic |
| TATTTCAACCGTGTTCATAC+TGG | 0.366794 | 1.4:-51102595 | MS.gene47390:CDS |
| CTGATGATAGTAGTAGTGAT+AGG | 0.370578 | 1.4:-51109118 | MS.gene47390:CDS |
| AAAGTGATCTCTTTGCATAT+TGG | 0.373779 | 1.4:+51103893 | None:intergenic |
| TGCAAAAGCTTCTTCACATC+TGG | 0.376117 | 1.4:+51104385 | None:intergenic |
| CTCTGGTGCAGAAGTAAATC+TGG | 0.379600 | 1.4:-51103497 | MS.gene47390:CDS |
| AGAGGAAATAGCTCAGTATT+TGG | 0.382147 | 1.4:-51109057 | MS.gene47390:CDS |
| CAGCAAAGCTTGTTGAGTAC+TGG | 0.391117 | 1.4:-51104297 | MS.gene47390:CDS |
| GATGAAAGCCATGAAGGTTA+TGG | 0.391406 | 1.4:-51103551 | MS.gene47390:CDS |
| GAAGAAGGAGATGTAATGTT+TGG | 0.391656 | 1.4:-51103520 | MS.gene47390:CDS |
| TGATGATATCAAAATGCATT+TGG | 0.392676 | 1.4:-51106122 | MS.gene47390:CDS |
| GGGGAAGACACATGCAGAAT+TGG | 0.400110 | 1.4:-51104362 | MS.gene47390:CDS |
| AGAAAGAAGGAGAAGGAAAT+CGG | 0.400976 | 1.4:-51109273 | MS.gene47390:CDS |
| ATCCTTACCAAACATCTTGA+TGG | 0.402365 | 1.4:-51107191 | MS.gene47390:CDS |
| TCCGCATTGTAAACAAAGAA+TGG | 0.405433 | 1.4:-51102291 | MS.gene47390:CDS |
| TTGAAGGCTCATACTGTGTC+TGG | 0.405951 | 1.4:-51108743 | MS.gene47390:CDS |
| GAGCTTGTGTCTTGTCTACA+AGG | 0.410873 | 1.4:+51102476 | None:intergenic |
| GCCAACCCATGTAGAATATT+GGG | 0.412226 | 1.4:-51106083 | MS.gene47390:CDS |
| AAATGCATTTGGACTTTGAC+AGG | 0.412773 | 1.4:-51106111 | MS.gene47390:CDS |
| ACTCCTTCTGGTGAGTGATT+GGG | 0.418323 | 1.4:-51104518 | MS.gene47390:CDS |
| ATCAGAGCCATCAAGATGTT+TGG | 0.429860 | 1.4:+51107184 | None:intergenic |
| TACCCTTGTACAACCTTTGG+AGG | 0.431571 | 1.4:+51102523 | None:intergenic |
| TCAAATGACTCGAATCCATT+TGG | 0.433737 | 1.4:-51108716 | MS.gene47390:CDS |
| ATGAAACAGTTCTGGTGAAA+AGG | 0.440946 | 1.4:+51103810 | None:intergenic |
| AAATGTTGGCGCAGGTCTAT+TGG | 0.444124 | 1.4:-51102651 | MS.gene47390:intron |
| AGTAGAGCTCTGTCCTCTTC+AGG | 0.445180 | 1.4:+51103760 | None:intergenic |
| GAAAGTTGCTAAGAAATTGA+AGG | 0.448557 | 1.4:-51108759 | MS.gene47390:CDS |
| TGAAGAGGACAGAGCTCTAC+TGG | 0.451227 | 1.4:-51103758 | MS.gene47390:intron |
| TTGAAATACTTTGGTTTCCT+GGG | 0.453521 | 1.4:+51102610 | None:intergenic |
| TGAACACGGTTGAAATACTT+TGG | 0.455750 | 1.4:+51102601 | None:intergenic |
| AGCACGACATGAGGAAGAAA+TGG | 0.455954 | 1.4:-51107613 | MS.gene47390:intron |
| ATGAAAGCCATGAAGGTTAT+GGG | 0.457579 | 1.4:-51103550 | MS.gene47390:CDS |
| TGAACCATACATGGTCTTCA+AGG | 0.457998 | 1.4:-51107141 | MS.gene47390:intron |
| TTAACCTTGAAGACCATGTA+TGG | 0.458201 | 1.4:+51107137 | None:intergenic |
| GTAGTAGTGATAGGGATGGT+AGG | 0.460746 | 1.4:-51109109 | MS.gene47390:CDS |
| GAAATCTGAGGAGGATATTG+AGG | 0.461280 | 1.4:-51104032 | MS.gene47390:CDS |
| TGTTCAGCAAGCACCTCGGC+TGG | 0.461619 | 1.4:+51104433 | None:intergenic |
| GTGTCTTGTCTACAAGGTCT+GGG | 0.462415 | 1.4:+51102482 | None:intergenic |
| CCGCATTGTAAACAAAGAAT+GGG | 0.467266 | 1.4:-51102290 | MS.gene47390:CDS |
| AAAGAGACAGAGAGAAAGGA+TGG | 0.468118 | 1.4:-51107960 | MS.gene47390:intron |
| TGGGAATATTCTCACAAGAA+AGG | 0.469421 | 1.4:-51102271 | MS.gene47390:CDS |
| GAGACGGAGCCGACATGAAT+CGG | 0.472964 | 1.4:-51109159 | MS.gene47390:CDS |
| AATTTATCTTCACCCTCTGA+TGG | 0.482921 | 1.4:+51104073 | None:intergenic |
| CACTATGGTGACCACTCCTC+CGG | 0.484550 | 1.4:+51109198 | None:intergenic |
| ATTGGTGGCATGACAAATAC+AGG | 0.484625 | 1.4:-51102633 | MS.gene47390:CDS |
| GTTATGGGAGCTATTGAAGA+AGG | 0.486560 | 1.4:-51103535 | MS.gene47390:CDS |
| GGATTGCGAAGAAGTTGATT+CGG | 0.490066 | 1.4:+51109238 | None:intergenic |
| GGTAAGGATATCAATTGGCT+TGG | 0.490758 | 1.4:+51107205 | None:intergenic |
| AAATTATCTTCAGATGGAGC+AGG | 0.490796 | 1.4:+51103577 | None:intergenic |
| TGTTTGGTAAGGATATCAAT+TGG | 0.493901 | 1.4:+51107200 | None:intergenic |
| ATTGAGCGTGATGTTGTTCA+AGG | 0.501715 | 1.4:-51108019 | MS.gene47390:CDS |
| ATCTCAAAATTATCTTCAGA+TGG | 0.502531 | 1.4:+51103571 | None:intergenic |
| CCTTGTACAACCTTTGGAGG+TGG | 0.503514 | 1.4:+51102526 | None:intergenic |
| CCACCTCCAAAGGTTGTACA+AGG | 0.506231 | 1.4:-51102526 | MS.gene47390:CDS |
| TTAAGATTGGAATCACCAAA+TGG | 0.507057 | 1.4:+51108701 | None:intergenic |
| GAAGAAGTAGAAGATGAGGC+TGG | 0.507844 | 1.4:-51103835 | MS.gene47390:CDS |
| TCCTTCTCAATAGTGTAAGT+TGG | 0.508185 | 1.4:+51102454 | None:intergenic |
| AGCAAAGCTTGTTGAGTACT+GGG | 0.510191 | 1.4:-51104296 | MS.gene47390:CDS |
| AGGTGAAGAAGTAGAAGATG+AGG | 0.510258 | 1.4:-51103839 | MS.gene47390:CDS |
| GGGTTTGACAGTGAACGAAA+TGG | 0.515774 | 1.4:-51106155 | MS.gene47390:CDS |
| AAGATGCAATTGATCGAGCT+AGG | 0.518701 | 1.4:-51104474 | MS.gene47390:CDS |
| CCGATCATTCCGATAGAATC+CGG | 0.519720 | 1.4:-51109217 | MS.gene47390:CDS |
| TCGAGCTGAGTTCCAGGACT+GGG | 0.522136 | 1.4:-51107387 | MS.gene47390:CDS |
| CCAGAAATTATCTGCGGTAG+CGG | 0.525395 | 1.4:+51102191 | None:intergenic |
| GGCATGACAAATACAGGCCC+AGG | 0.525776 | 1.4:-51102627 | MS.gene47390:CDS |
| CTCGAGCTGAGTTCCAGGAC+TGG | 0.526610 | 1.4:-51107388 | MS.gene47390:CDS |
| AATGCAGGCGGAAATTGAAA+AGG | 0.529839 | 1.4:-51107670 | MS.gene47390:intron |
| ACCACTCCTCCGGATTCTAT+CGG | 0.536244 | 1.4:+51109208 | None:intergenic |
| AGAAGTAAATCTGGATTCAC+AGG | 0.541558 | 1.4:-51103488 | MS.gene47390:intron |
| TCTGTGACCGCCGATCACTA+TGG | 0.542891 | 1.4:+51109183 | None:intergenic |
| CTTCGTATGGTGGCCCTGCA+TGG | 0.548737 | 1.4:+51102398 | None:intergenic |
| TGATGATAGTAGTAGTGATA+GGG | 0.552104 | 1.4:-51109117 | MS.gene47390:CDS |
| CTCAAGGAAAATTACTGAAG+AGG | 0.557543 | 1.4:-51109075 | MS.gene47390:CDS |
| GAATGGGTAGGAAAGAAAGA+AGG | 0.558466 | 1.4:-51109286 | MS.gene47390:CDS |
| AGAAATAAATGAACCATACA+TGG | 0.559048 | 1.4:-51107150 | MS.gene47390:CDS |
| ATACCTCCCAATATTCTACA+TGG | 0.559393 | 1.4:+51106077 | None:intergenic |
| CCGGATTCTATCGGAATGAT+CGG | 0.567648 | 1.4:+51109217 | None:intergenic |
| TCCCAATATTCTACATGGGT+TGG | 0.568443 | 1.4:+51106082 | None:intergenic |
| AGCCATCAAGATGTTTGGTA+AGG | 0.571050 | 1.4:+51107189 | None:intergenic |
| ATTAAAGCAGAGGGTCAAGA+AGG | 0.580470 | 1.4:-51103859 | MS.gene47390:CDS |
| AGACTTACAATGTCTTCGTA+TGG | 0.580822 | 1.4:+51102385 | None:intergenic |
| ATTGAGAAGGATGGCAGCAA+TGG | 0.582219 | 1.4:-51102442 | MS.gene47390:CDS |
| TCAGCAAGCACCTCGGCTGG+AGG | 0.583261 | 1.4:+51104436 | None:intergenic |
| GAAATTATCTGCGGTAGCGG+TGG | 0.585724 | 1.4:+51102194 | None:intergenic |
| CCCGAACCCATTAAAGCAGA+GGG | 0.588808 | 1.4:-51103868 | MS.gene47390:CDS |
| ATTGAGTCAGAAATGCGTAC+TGG | 0.589102 | 1.4:-51104322 | MS.gene47390:CDS |
| CCCATTCTTTGTTTACAATG+CGG | 0.589870 | 1.4:+51102290 | None:intergenic |
| TCCGATAGAATCCGGAGGAG+TGG | 0.590097 | 1.4:-51109209 | MS.gene47390:CDS |
| GGAGATGTAATGTTTGGCTC+TGG | 0.590473 | 1.4:-51103514 | MS.gene47390:CDS |
| CTGAGAAGAATAGAATGGGT+AGG | 0.591313 | 1.4:-51109298 | None:intergenic |
| TTACCTTGGCTTTATATATG+CGG | 0.592230 | 1.4:+51104254 | None:intergenic |
| ATCGGCGGTCACAGAGGAGA+CGG | 0.593716 | 1.4:-51109175 | MS.gene47390:CDS |
| TCCCGAACCCATTAAAGCAG+AGG | 0.593821 | 1.4:-51103869 | MS.gene47390:CDS |
| TGCATCATAAGATTCCATGC+AGG | 0.594356 | 1.4:-51102412 | MS.gene47390:CDS |
| ATTGATCGAGCTAGGGTGCG+TGG | 0.595446 | 1.4:-51104466 | MS.gene47390:CDS |
| ATATTCTACATGGGTTGGCG+TGG | 0.603561 | 1.4:+51106087 | None:intergenic |
| GTAGGAAAGAAAGAAGGAGA+AGG | 0.603835 | 1.4:-51109280 | MS.gene47390:CDS |
| GCATCATAAGATTCCATGCA+GGG | 0.604220 | 1.4:-51102411 | MS.gene47390:CDS |
| GATAGTAGTAGTGATAGGGA+TGG | 0.605108 | 1.4:-51109113 | MS.gene47390:CDS |
| TGTTGGCGCAGGTCTATTGG+TGG | 0.605871 | 1.4:-51102648 | MS.gene47390:intron |
| CTTACAATGTCTTCGTATGG+TGG | 0.608002 | 1.4:+51102388 | None:intergenic |
| AGATGCAATTGATCGAGCTA+GGG | 0.609364 | 1.4:-51104473 | MS.gene47390:CDS |
| ACTTACACTATTGAGAAGGA+TGG | 0.610559 | 1.4:-51102451 | MS.gene47390:CDS |
| GTTTCATGGTGATGAAAATG+AGG | 0.610771 | 1.4:-51103794 | MS.gene47390:CDS |
| TGGAGAAGAACCTCCAGCCG+AGG | 0.612324 | 1.4:-51104446 | MS.gene47390:CDS |
| TCATGACAATCCACCTCCAA+AGG | 0.613499 | 1.4:-51102536 | MS.gene47390:CDS |
| GAGACGAATTCAGGAAGCAA+TGG | 0.614187 | 1.4:-51103608 | MS.gene47390:CDS |
| CCTTGGCTTTATATATGCGG+AGG | 0.616946 | 1.4:+51104257 | None:intergenic |
| AAGAAGTAGAAGATGAGGCT+GGG | 0.617278 | 1.4:-51103834 | MS.gene47390:CDS |
| TCCAACTTACACTATTGAGA+AGG | 0.618655 | 1.4:-51102455 | MS.gene47390:CDS |
| ACTCCCAATCACTCACCAGA+AGG | 0.619083 | 1.4:+51104515 | None:intergenic |
| CGCCTTAAGAAACCATCAGA+GGG | 0.619195 | 1.4:-51104085 | MS.gene47390:CDS |
| GTAGGAAGAGAAAGTCCTCA+AGG | 0.620517 | 1.4:-51109091 | MS.gene47390:CDS |
| CCTCCGCATATATAAAGCCA+AGG | 0.624228 | 1.4:-51104257 | MS.gene47390:intron |
| AATGCATTTGGACTTTGACA+GGG | 0.628278 | 1.4:-51106110 | MS.gene47390:CDS |
| GGAGTGGTCACCATAGTGAT+CGG | 0.640226 | 1.4:-51109193 | MS.gene47390:CDS |
| ACTTGAGAAAGCACGACATG+AGG | 0.644679 | 1.4:-51107622 | MS.gene47390:CDS |
| GGAAGCTATTGATCCTGAAG+AGG | 0.658125 | 1.4:-51103773 | MS.gene47390:CDS |
| TGCTCATGTTATGAAATCTG+AGG | 0.658528 | 1.4:-51104044 | MS.gene47390:CDS |
| TTTAAGTGCACATTTGAACG+TGG | 0.660103 | 1.4:-51102247 | MS.gene47390:CDS |
| TACCTCCCAATATTCTACAT+GGG | 0.662886 | 1.4:+51106078 | None:intergenic |
| GAGCCGACATGAATCGGACT+CGG | 0.665866 | 1.4:-51109153 | MS.gene47390:CDS |
| TCATGTTATGAAATCTGAGG+AGG | 0.666704 | 1.4:-51104041 | MS.gene47390:CDS |
| GTGTTCATACTGGATATGAG+TGG | 0.672306 | 1.4:-51102585 | MS.gene47390:CDS |
| TATCCGAGTCCGATTCATGT+CGG | 0.677662 | 1.4:+51109150 | None:intergenic |
| ATAGTGATCGGCGGTCACAG+AGG | 0.679327 | 1.4:-51109181 | MS.gene47390:CDS |
| AACCCATGTAGAATATTGGG+AGG | 0.679555 | 1.4:-51106080 | MS.gene47390:intron |
| ACGCCTTAAGAAACCATCAG+AGG | 0.683028 | 1.4:-51104086 | MS.gene47390:CDS |
| TCTGAAATTAGATTGCGTGA+AGG | 0.695601 | 1.4:-51107233 | MS.gene47390:CDS |
| CACCTCCAAAGGTTGTACAA+GGG | 0.704703 | 1.4:-51102525 | MS.gene47390:CDS |
| GTGGTCACCATAGTGATCGG+CGG | 0.706810 | 1.4:-51109190 | MS.gene47390:CDS |
| ATCATTCCGATAGAATCCGG+AGG | 0.708307 | 1.4:-51109214 | MS.gene47390:CDS |
| ACTCATATCCAGTATGAACA+CGG | 0.712518 | 1.4:+51102587 | None:intergenic |
| GAGGTGCTTGCTGAACAGAG+AGG | 0.735663 | 1.4:-51104427 | MS.gene47390:CDS |
| TCTCTGTTCAGCAAGCACCT+CGG | 0.736566 | 1.4:+51104429 | None:intergenic |
| AGAGTGCCAGAAATTATCTG+CGG | 0.744813 | 1.4:+51102185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51102198 | 51109306 | 51102198 | ID=MS.gene47390 |
| chr1.4 | mRNA | 51102198 | 51109306 | 51102198 | ID=MS.gene47390.t1;Parent=MS.gene47390 |
| chr1.4 | exon | 51109037 | 51109306 | 51109037 | ID=MS.gene47390.t1.exon1;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51109037 | 51109306 | 51109037 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51108695 | 51108786 | 51108695 | ID=MS.gene47390.t1.exon2;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51108695 | 51108786 | 51108695 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51107961 | 51108060 | 51107961 | ID=MS.gene47390.t1.exon3;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51107961 | 51108060 | 51107961 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51107614 | 51107685 | 51107614 | ID=MS.gene47390.t1.exon4;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51107614 | 51107685 | 51107614 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51107370 | 51107432 | 51107370 | ID=MS.gene47390.t1.exon5;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51107370 | 51107432 | 51107370 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51107142 | 51107282 | 51107142 | ID=MS.gene47390.t1.exon6;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51107142 | 51107282 | 51107142 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51106081 | 51106176 | 51106081 | ID=MS.gene47390.t1.exon7;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51106081 | 51106176 | 51106081 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51104258 | 51104542 | 51104258 | ID=MS.gene47390.t1.exon8;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51104258 | 51104542 | 51104258 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51104020 | 51104155 | 51104020 | ID=MS.gene47390.t1.exon9;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51104020 | 51104155 | 51104020 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51103759 | 51103916 | 51103759 | ID=MS.gene47390.t1.exon10;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51103759 | 51103916 | 51103759 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51103489 | 51103665 | 51103489 | ID=MS.gene47390.t1.exon11;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51103489 | 51103665 | 51103489 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51102393 | 51102659 | 51102393 | ID=MS.gene47390.t1.exon12;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51102393 | 51102659 | 51102393 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| chr1.4 | exon | 51102198 | 51102317 | 51102198 | ID=MS.gene47390.t1.exon13;Parent=MS.gene47390.t1 |
| chr1.4 | CDS | 51102198 | 51102317 | 51102198 | ID=cds.MS.gene47390.t1;Parent=MS.gene47390.t1 |
| Gene Sequence |
| Protein sequence |
