Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50615.t1 | XP_013468521.1 | 97.4 | 547 | 14 | 0 | 2 | 548 | 48 | 594 | 5.80E-278 | 966.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50615.t1 | Q9LII8 | 30.4 | 477 | 315 | 8 | 68 | 532 | 168 | 639 | 4.8e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50615.t1 | A0A072VMA4 | 97.4 | 547 | 14 | 0 | 2 | 548 | 48 | 594 | 4.2e-278 | 966.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene50615 | 0.831504 | 1.61E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene50615 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene50615 | 0.80133 | 9.48E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene50615 | 0.819872 | 9.25E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene50615 | 0.853962 | 1.69E-61 | -1.69E-46 |
| MS.gene049825 | MS.gene50615 | 0.848846 | 4.72E-60 | -1.69E-46 |
| MS.gene049863 | MS.gene50615 | 0.810502 | 1.12E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene50615 | 0.842118 | 3.14E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene50615 | 0.814273 | 1.68E-51 | -1.69E-46 |
| MS.gene050885 | MS.gene50615 | 0.831134 | 1.98E-55 | -1.69E-46 |
| MS.gene051574 | MS.gene50615 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene50615 | 0.823891 | 1.08E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene50615 | 0.802854 | 4.60E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene50615 | 0.808273 | 3.36E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene50615 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene50615 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene50615 | 0.825152 | 5.48E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene50615 | 0.842127 | 3.13E-58 | -1.69E-46 |
| MS.gene052717 | MS.gene50615 | 0.823368 | 1.44E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene50615 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene50615 | 0.829418 | 5.21E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene50615 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene50615 | 0.872211 | 3.78E-67 | -1.69E-46 |
| MS.gene053294 | MS.gene50615 | 0.818585 | 1.82E-52 | -1.69E-46 |
| MS.gene05365 | MS.gene50615 | 0.810334 | 1.21E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene50615 | 0.811793 | 5.86E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene50615 | 0.841977 | 3.42E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene50615 | 0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene055166 | MS.gene50615 | 0.831809 | 1.35E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene50615 | 0.804056 | 2.59E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene50615 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene50615 | 0.802257 | 6.11E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene50615 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene50615 | 0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene50615 | 0.853445 | 2.38E-61 | -1.69E-46 |
| MS.gene055841 | MS.gene50615 | 0.805223 | 1.48E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene50615 | 0.854405 | 1.26E-61 | -1.69E-46 |
| MS.gene056403 | MS.gene50615 | 0.879794 | 9.31E-70 | -1.69E-46 |
| MS.gene05659 | MS.gene50615 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene50615 | 0.867864 | 9.99E-66 | -1.69E-46 |
| MS.gene05689 | MS.gene50615 | 0.867977 | 9.19E-66 | -1.69E-46 |
| MS.gene056986 | MS.gene50615 | 0.806842 | 6.76E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene50615 | 0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene50615 | 0.803305 | 3.71E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene50615 | 0.806621 | 7.53E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene50615 | 0.810268 | 1.25E-50 | -1.69E-46 |
| MS.gene058126 | MS.gene50615 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene50615 | 0.830999 | 2.14E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene50615 | 0.855069 | 8.08E-62 | -1.69E-46 |
| MS.gene05985 | MS.gene50615 | -0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene50615 | 0.894471 | 2.39E-75 | -1.69E-46 |
| MS.gene060365 | MS.gene50615 | 0.826111 | 3.25E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene50615 | 0.81484 | 1.26E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene50615 | 0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene50615 | 0.874565 | 6.12E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50615.t1 | MTR_1g070145 | 97.340 | 564 | 15 | 0 | 1 | 564 | 47 | 610 | 0.0 | 1125 |
| MS.gene50615.t1 | MTR_8g099745 | 28.715 | 498 | 330 | 6 | 45 | 528 | 65 | 551 | 2.88e-49 | 180 |
| MS.gene50615.t1 | MTR_8g027385 | 28.024 | 496 | 336 | 8 | 45 | 529 | 52 | 537 | 2.25e-44 | 166 |
| MS.gene50615.t1 | MTR_3g077950 | 26.326 | 509 | 359 | 6 | 37 | 536 | 273 | 774 | 1.22e-42 | 164 |
| MS.gene50615.t1 | MTR_3g077950 | 26.326 | 509 | 359 | 6 | 37 | 536 | 245 | 746 | 1.30e-42 | 164 |
| MS.gene50615.t1 | MTR_6g007110 | 27.879 | 495 | 324 | 7 | 52 | 528 | 190 | 669 | 2.67e-41 | 159 |
| MS.gene50615.t1 | MTR_4g106900 | 25.255 | 491 | 355 | 5 | 45 | 528 | 167 | 652 | 7.64e-41 | 157 |
| MS.gene50615.t1 | MTR_6g007110 | 27.974 | 454 | 294 | 7 | 52 | 487 | 190 | 628 | 8.25e-38 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50615.t1 | AT2G31240 | 68.556 | 547 | 166 | 4 | 1 | 544 | 68 | 611 | 0.0 | 772 |
| MS.gene50615.t1 | AT3G27960 | 30.171 | 527 | 346 | 11 | 45 | 557 | 143 | 661 | 4.39e-53 | 192 |
| MS.gene50615.t1 | AT3G27960 | 30.171 | 527 | 346 | 11 | 45 | 557 | 143 | 661 | 4.39e-53 | 192 |
| MS.gene50615.t1 | AT3G27960 | 30.044 | 456 | 301 | 8 | 45 | 487 | 143 | 593 | 2.72e-48 | 177 |
| MS.gene50615.t1 | AT4G10840 | 29.191 | 507 | 324 | 9 | 47 | 529 | 78 | 573 | 7.42e-48 | 177 |
| MS.gene50615.t1 | AT4G10840 | 28.879 | 464 | 296 | 8 | 47 | 487 | 78 | 530 | 6.28e-44 | 164 |
| MS.gene50615.t1 | AT1G27500 | 26.793 | 474 | 334 | 5 | 68 | 533 | 161 | 629 | 7.52e-42 | 160 |
| MS.gene50615.t1 | AT1G27500 | 26.653 | 484 | 322 | 7 | 68 | 533 | 172 | 640 | 8.64e-42 | 160 |
Find 143 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATGAGTTTGCAGTTAA+TGG | 0.164879 | 1.2:-53500588 | MS.gene50615:CDS |
| GAAGCAGGCTATTCCTTATT+TGG | 0.171283 | 1.2:-53499658 | MS.gene50615:CDS |
| TGGTTATATCTACAACAATT+TGG | 0.200770 | 1.2:-53499583 | MS.gene50615:CDS |
| AGCTTTGGTCCCAAACATTT+TGG | 0.213827 | 1.2:-53499609 | MS.gene50615:CDS |
| GCTGCATGTGTATTATTATT+AGG | 0.225487 | 1.2:+53497942 | None:intergenic |
| GGTATCTTAATAAGGCTAAT+AGG | 0.226066 | 1.2:-53500523 | MS.gene50615:CDS |
| TCGGAAGTGTTTGGAGATTA+AGG | 0.232786 | 1.2:-53500372 | MS.gene50615:CDS |
| TAATAAGGCTAATAGGGTTT+TGG | 0.236340 | 1.2:-53500516 | MS.gene50615:CDS |
| GAGGAAGATAGTGAGGAGTT+AGG | 0.240509 | 1.2:-53500338 | MS.gene50615:CDS |
| ATGCTGCAGGTGTACTATTA+TGG | 0.241724 | 1.2:+53497880 | None:intergenic |
| GGCGCTTCCGTATTGTTTAA+AGG | 0.255513 | 1.2:-53500261 | MS.gene50615:CDS |
| GGTTATATCTACAACAATTT+GGG | 0.261299 | 1.2:-53499582 | MS.gene50615:CDS |
| GGGTGGTTGTTGTTGCTTAC+AGG | 0.274076 | 1.2:-53499687 | MS.gene50615:CDS |
| AGGAGTTAGGGAAAGGGAAT+AGG | 0.275680 | 1.2:-53500325 | MS.gene50615:CDS |
| GAGCATTTCTTCGGTTGTTT+TGG | 0.276205 | 1.2:+53500781 | None:intergenic |
| TCAGCAGCACTTTCCAAATA+AGG | 0.279505 | 1.2:+53499645 | None:intergenic |
| AAAAGTTTGCAGACTGTAAA+AGG | 0.282943 | 1.2:-53499914 | MS.gene50615:CDS |
| GGTTTAGCTGCATTGAAAAT+TGG | 0.289450 | 1.2:-53500713 | MS.gene50615:CDS |
| GTCTTAATTATGGTTTAAAT+AGG | 0.293303 | 1.2:-53500562 | MS.gene50615:CDS |
| TGTGTCAGGTTGGGAGTTAC+TGG | 0.296347 | 1.2:+53497857 | None:intergenic |
| AATAGGTTTAGTGATAGTTT+AGG | 0.302645 | 1.2:-53500545 | MS.gene50615:CDS |
| TCAAAGGCTTATGGTGATAT+TGG | 0.309390 | 1.2:-53499435 | MS.gene50615:CDS |
| AGGAAGATAGTGAGGAGTTA+GGG | 0.310369 | 1.2:-53500337 | MS.gene50615:CDS |
| ATAGGTTTAGTGATAGTTTA+GGG | 0.311847 | 1.2:-53500544 | MS.gene50615:CDS |
| TTAATGGGTAGTCTTAATTA+TGG | 0.322455 | 1.2:-53500572 | MS.gene50615:CDS |
| CAGAATCTTTCAAAGGCTTA+TGG | 0.327198 | 1.2:-53499444 | MS.gene50615:CDS |
| CCTCCGAGTGCTGCTCTTGT+GGG | 0.336592 | 1.2:+53499730 | None:intergenic |
| TATGTCAGGTTGGGAGTTAT+TGG | 0.341920 | 1.2:+53497917 | None:intergenic |
| AGGTGTTTAGAGATTTCTAT+TGG | 0.345983 | 1.2:-53499894 | MS.gene50615:CDS |
| GTATCTTAATAAGGCTAATA+GGG | 0.348444 | 1.2:-53500522 | MS.gene50615:CDS |
| GAGATACATACGAAGCGATT+AGG | 0.352147 | 1.2:-53500233 | MS.gene50615:CDS |
| GGCGTTGGAGCAGAATGTTT+TGG | 0.357994 | 1.2:-53500135 | MS.gene50615:CDS |
| AGAGAATCTTCGGAAGTGTT+TGG | 0.370920 | 1.2:-53500381 | MS.gene50615:CDS |
| GCGAATATGATGATTGCTTT+GGG | 0.375275 | 1.2:-53500050 | MS.gene50615:CDS |
| ATAACCAACTCCAAAATGTT+TGG | 0.376664 | 1.2:+53499599 | None:intergenic |
| CTTCTTGGGATTGTTTATAG+TGG | 0.378113 | 1.2:-53500176 | MS.gene50615:CDS |
| GTGTTTGTGTTGATGATGTT+AGG | 0.380305 | 1.2:-53500475 | MS.gene50615:CDS |
| GCGCATGATAGGAAGCTTCT+TGG | 0.385283 | 1.2:-53500191 | MS.gene50615:CDS |
| TAGTTTAGGGTATCTTAATA+AGG | 0.387240 | 1.2:-53500531 | MS.gene50615:CDS |
| GGAAATTTCATTCAATGAAA+AGG | 0.398867 | 1.2:-53500741 | MS.gene50615:CDS |
| CTTCTTCTGCACTTGCTCCA+TGG | 0.399591 | 1.2:+53498057 | None:intergenic |
| AGATACATACGAAGCGATTA+GGG | 0.403607 | 1.2:-53500232 | MS.gene50615:CDS |
| CCCTCCGAGTGCTGCTCTTG+TGG | 0.404697 | 1.2:+53499729 | None:intergenic |
| GCTATGAGTTTGCAGTTAAT+GGG | 0.407040 | 1.2:-53500587 | MS.gene50615:CDS |
| CTGTTGAGGTTGCGCATGAT+AGG | 0.407770 | 1.2:-53500202 | MS.gene50615:CDS |
| GGATGTCTGCTAAACTGTTC+GGG | 0.410647 | 1.2:+53497821 | None:intergenic |
| TGCGAATATGATGATTGCTT+TGG | 0.410869 | 1.2:-53500051 | MS.gene50615:CDS |
| AGCAGCAAGTTATAGATGCT+TGG | 0.412778 | 1.2:-53498085 | MS.gene50615:CDS |
| AGCTCTTGTGCTTGTATCAA+TGG | 0.413035 | 1.2:-53499958 | MS.gene50615:CDS |
| GGAGTTAGGGAAAGGGAATA+GGG | 0.418677 | 1.2:-53500324 | MS.gene50615:CDS |
| TAACCAACTCCAAAATGTTT+GGG | 0.419203 | 1.2:+53499600 | None:intergenic |
| TGGGATTGTTTATAGTGGGA+TGG | 0.423640 | 1.2:-53500171 | MS.gene50615:CDS |
| GGAAGTGTATCTGCAAGAAT+AGG | 0.426493 | 1.2:-53499708 | MS.gene50615:CDS |
| GGGGAAAGCGTTATGTAATC+AGG | 0.427739 | 1.2:-53499937 | MS.gene50615:CDS |
| CGCATGATAGGAAGCTTCTT+GGG | 0.430357 | 1.2:-53500190 | MS.gene50615:CDS |
| GAATGCTTTGAGCATTTCTT+CGG | 0.432282 | 1.2:+53500772 | None:intergenic |
| AGGATGTCTGCTAAACTGTT+CGG | 0.436022 | 1.2:+53497820 | None:intergenic |
| GCTCTTGTGCTTGTATCAAT+GGG | 0.440321 | 1.2:-53499957 | MS.gene50615:CDS |
| AAGAGGCGCTAGAGAATCTT+CGG | 0.442376 | 1.2:-53500391 | MS.gene50615:CDS |
| GGTGTTTAGAGATTTCTATT+GGG | 0.444294 | 1.2:-53499893 | MS.gene50615:CDS |
| GATTGACGTGGCGGTGTGTC+AGG | 0.451015 | 1.2:+53497843 | None:intergenic |
| GCAGCAAGTTATAGATGCTT+GGG | 0.454415 | 1.2:-53498084 | MS.gene50615:CDS |
| TCATGCTGTGCAATTTGAGT+TGG | 0.455338 | 1.2:-53500444 | MS.gene50615:CDS |
| TGCTGCAGGTGTACTATTAT+GGG | 0.459170 | 1.2:+53497881 | None:intergenic |
| GAAGTGTATCTGCAAGAATA+GGG | 0.459783 | 1.2:-53499707 | MS.gene50615:CDS |
| ATAGTGAGGAGTTAGGGAAA+GGG | 0.461155 | 1.2:-53500331 | MS.gene50615:CDS |
| GGAAAGGGAAGAGCCTTCAT+AGG | 0.464833 | 1.2:+53497963 | None:intergenic |
| AACTGCAAACTCATAGCATA+AGG | 0.469559 | 1.2:+53500593 | None:intergenic |
| TGTGTATTATTATTAGGAAA+GGG | 0.478913 | 1.2:+53497948 | None:intergenic |
| GTCAGCAGCGCAGATGTTTG+CGG | 0.481206 | 1.2:-53499529 | MS.gene50615:CDS |
| TTCTTGGGATTGTTTATAGT+GGG | 0.486322 | 1.2:-53500175 | MS.gene50615:CDS |
| AGAAACCTCCATGATATCCT+TGG | 0.489502 | 1.2:+53499503 | None:intergenic |
| TCATTCAATGAAAAGGAGCT+TGG | 0.491295 | 1.2:-53500734 | MS.gene50615:CDS |
| GCTAATGTTAAGACGGCGAT+GGG | 0.491334 | 1.2:-53500422 | MS.gene50615:CDS |
| TTTGGGTAGGTTAGAGAATG+AGG | 0.492492 | 1.2:-53500498 | MS.gene50615:CDS |
| GAACGGTTGAAAGAGAGCTT+TGG | 0.492632 | 1.2:-53499624 | MS.gene50615:CDS |
| GTTGTTGTTGCTTACAGGTA+AGG | 0.496912 | 1.2:-53499682 | MS.gene50615:CDS |
| TGCAAATGAGGTTCCTATGA+AGG | 0.499756 | 1.2:-53497976 | MS.gene50615:CDS |
| GAAGAATTGGAATCTCAGTT+CGG | 0.503248 | 1.2:-53500099 | MS.gene50615:CDS |
| GATGTAACGGTATGTCAGGT+TGG | 0.504036 | 1.2:+53497907 | None:intergenic |
| GATAGTGAGGAGTTAGGGAA+AGG | 0.510103 | 1.2:-53500332 | MS.gene50615:CDS |
| CTGCGATTTCGTTGCTGAAG+AGG | 0.511189 | 1.2:-53499776 | MS.gene50615:CDS |
| ATGTAACGGTATGTCAGGTT+GGG | 0.511251 | 1.2:+53497908 | None:intergenic |
| TTGGGTAGGTTAGAGAATGA+GGG | 0.511672 | 1.2:-53500497 | MS.gene50615:CDS |
| ACGTGGCGGTGTGTCAGGTT+GGG | 0.514066 | 1.2:+53497848 | None:intergenic |
| GATATCATGGAGGTTTCTCT+TGG | 0.517703 | 1.2:-53499498 | MS.gene50615:CDS |
| GTTCATAGTTTCATATAGCA+TGG | 0.522310 | 1.2:+53499809 | None:intergenic |
| GATTGTTTATAGTGGGATGG+AGG | 0.522341 | 1.2:-53500168 | MS.gene50615:CDS |
| GACGTGGCGGTGTGTCAGGT+TGG | 0.523342 | 1.2:+53497847 | None:intergenic |
| GCTCAAAGCATTCAGTGAGA+TGG | 0.525816 | 1.2:-53500762 | MS.gene50615:CDS |
| TGCGATTTCGTTGCTGAAGA+GGG | 0.530007 | 1.2:-53499775 | MS.gene50615:CDS |
| TGCGGTAGCCAAGGATATCA+TGG | 0.531067 | 1.2:-53499511 | MS.gene50615:CDS |
| CCGCGGTGTCTCTGCAAATG+AGG | 0.535152 | 1.2:-53497988 | MS.gene50615:CDS |
| TGTCTAGGAGAGATTTGAGT+GGG | 0.536028 | 1.2:+53500851 | None:intergenic |
| GAAAGGGAATAGGGATTTAG+CGG | 0.537665 | 1.2:-53500315 | MS.gene50615:CDS |
| GCTTACAGGTAAGGTGAAGC+AGG | 0.537806 | 1.2:-53499673 | MS.gene50615:CDS |
| GGAAGTTTCTGAGGCATACT+CGG | 0.541766 | 1.2:-53499838 | MS.gene50615:CDS |
| CTATTATGGGATTGATGTAA+CGG | 0.547602 | 1.2:+53497894 | None:intergenic |
| GAAACTCAATTGCAAGGGAA+TGG | 0.548823 | 1.2:+53498108 | None:intergenic |
| ATGTGTATTATTATTAGGAA+AGG | 0.552489 | 1.2:+53497947 | None:intergenic |
| CCACAAGAGCAGCACTCGGA+GGG | 0.552886 | 1.2:-53499729 | MS.gene50615:CDS |
| GGAGGATCATGAGAAGGCGT+TGG | 0.552931 | 1.2:-53500150 | MS.gene50615:CDS |
| TGAGTTGGCTAATGTTAAGA+CGG | 0.567694 | 1.2:-53500429 | MS.gene50615:CDS |
| GATTGATGTAACGGTATGTC+AGG | 0.570067 | 1.2:+53497903 | None:intergenic |
| GGCGATGGGGAGGAGAGAAG+AGG | 0.570707 | 1.2:-53500408 | MS.gene50615:CDS |
| TCTAACGCCTTTAAACAATA+CGG | 0.571467 | 1.2:+53500254 | None:intergenic |
| AGCATGTCAGAATCTTTCAA+AGG | 0.573306 | 1.2:-53499451 | MS.gene50615:CDS |
| GGCTAATGTTAAGACGGCGA+TGG | 0.573411 | 1.2:-53500423 | MS.gene50615:CDS |
| GGGAGATACGATGAAGCTGT+TGG | 0.573991 | 1.2:-53500029 | MS.gene50615:CDS |
| GCTGCTGAAACTCAATTGCA+AGG | 0.574173 | 1.2:+53498102 | None:intergenic |
| AATTGCACAGCATGAAGCAC+AGG | 0.576090 | 1.2:+53500452 | None:intergenic |
| GTTATATCTACAACAATTTG+GGG | 0.576788 | 1.2:-53499581 | MS.gene50615:CDS |
| AGGCTTATGGTGATATTGGA+AGG | 0.580409 | 1.2:-53499431 | MS.gene50615:intron |
| CTGCTGAAACTCAATTGCAA+GGG | 0.582844 | 1.2:+53498103 | None:intergenic |
| ATTAGGGATGAATTCTGTTG+AGG | 0.587352 | 1.2:-53500216 | MS.gene50615:CDS |
| CTCATTTGCAGAGACACCGC+GGG | 0.591950 | 1.2:+53497989 | None:intergenic |
| TACACCGGTGGAAGTTTCTG+AGG | 0.595722 | 1.2:-53499847 | MS.gene50615:CDS |
| ATGTTAAGACGGCGATGGGG+AGG | 0.595931 | 1.2:-53500418 | MS.gene50615:CDS |
| GCAGATGTTTGCGGTAGCCA+AGG | 0.596662 | 1.2:-53499520 | MS.gene50615:CDS |
| TGGGAGTTACTGGATGCTGC+AGG | 0.602801 | 1.2:+53497867 | None:intergenic |
| AACATCTGCGCTGCTGACTG+AGG | 0.607323 | 1.2:+53499534 | None:intergenic |
| GCTCCCACAAGAGCAGCACT+CGG | 0.608859 | 1.2:-53499733 | MS.gene50615:CDS |
| ATAGATGCTTGGGAAAGCCA+TGG | 0.619820 | 1.2:-53498074 | MS.gene50615:CDS |
| ATTTGGAAAGTGCTGCTGAA+CGG | 0.624374 | 1.2:-53499641 | MS.gene50615:CDS |
| TAAACTGTTCGGGATTGACG+TGG | 0.629660 | 1.2:+53497831 | None:intergenic |
| TGGGATGGAGGATCATGAGA+AGG | 0.633696 | 1.2:-53500156 | MS.gene50615:CDS |
| GAAGCTTGATCGTGAAGGTG+AGG | 0.637522 | 1.2:-53500687 | MS.gene50615:CDS |
| TTTAGCGGAAGCTTATGTTG+CGG | 0.637589 | 1.2:-53500300 | MS.gene50615:CDS |
| CCCACAAGAGCAGCACTCGG+AGG | 0.640444 | 1.2:-53499730 | MS.gene50615:CDS |
| AAGAGAACAGATTACACCGG+TGG | 0.642489 | 1.2:-53499859 | MS.gene50615:CDS |
| CGAATATGATGATTGCTTTG+GGG | 0.644617 | 1.2:-53500049 | MS.gene50615:CDS |
| TCAATTGTATCTGCATGATG+TGG | 0.648031 | 1.2:+53499474 | None:intergenic |
| ACTGTTCGGGATTGACGTGG+CGG | 0.661175 | 1.2:+53497834 | None:intergenic |
| TTGTCTAGGAGAGATTTGAG+TGG | 0.661188 | 1.2:+53500850 | None:intergenic |
| TATGCCTCAGAAACTTCCAC+CGG | 0.674657 | 1.2:+53499843 | None:intergenic |
| GTGTATCTGCAAGAATAGGG+TGG | 0.702061 | 1.2:-53499704 | MS.gene50615:CDS |
| CCTCATTTGCAGAGACACCG+CGG | 0.706770 | 1.2:+53497988 | None:intergenic |
| CTCTTGTGCTTGTATCAATG+GGG | 0.708946 | 1.2:-53499956 | MS.gene50615:CDS |
| TAAAAGAGAACAGATTACAC+CGG | 0.715171 | 1.2:-53499862 | MS.gene50615:CDS |
| TTATATCTACAACAATTTGG+GGG | 0.722117 | 1.2:-53499580 | MS.gene50615:CDS |
| CTAATGTTAAGACGGCGATG+GGG | 0.738436 | 1.2:-53500421 | MS.gene50615:CDS |
| GGTAGCCAAGGATATCATGG+AGG | 0.746203 | 1.2:-53499508 | MS.gene50615:CDS |
| GGTCTGAAGCTTGATCGTGA+AGG | 0.746730 | 1.2:-53500692 | MS.gene50615:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTCATTATTTAGAT+CGG | - | chr1.2:53500211-53500230 | MS.gene50615:CDS | 15.0% |
| !! | CTTGAATTACAAAAATATTT+AGG | - | chr1.2:53500337-53500356 | MS.gene50615:CDS | 15.0% |
| !! | TTACAAAAATATTTAGGAAT+CGG | - | chr1.2:53500343-53500362 | MS.gene50615:CDS | 15.0% |
| !! | AATTCAAGTACATACTATAT+AGG | + | chr1.2:53500325-53500344 | None:intergenic | 20.0% |
| !! | ATGTGTATTATTATTAGGAA+AGG | + | chr1.2:53500758-53500777 | None:intergenic | 20.0% |
| !! | GTCTTAATTATGGTTTAAAT+AGG | - | chr1.2:53498140-53498159 | MS.gene50615:intron | 20.0% |
| !! | TGTGTATTATTATTAGGAAA+GGG | + | chr1.2:53500757-53500776 | None:intergenic | 20.0% |
| !!! | AACAATTATTTTGAGACTTA+AGG | - | chr1.2:53499451-53499470 | MS.gene50615:CDS | 20.0% |
| !!! | ATAAAACTTAGTTTGATAGA+TGG | + | chr1.2:53499910-53499929 | None:intergenic | 20.0% |
| !!! | CAGTTTAAACATTTAACTTT+TGG | - | chr1.2:53499391-53499410 | MS.gene50615:intron | 20.0% |
| !!! | TTCATGTTTTCCTAAAATAT+TGG | - | chr1.2:53500563-53500582 | MS.gene50615:CDS | 20.0% |
| ! | AAAAATATTTAGGAATCGGA+AGG | - | chr1.2:53500347-53500366 | MS.gene50615:CDS | 25.0% |
| ! | AATAGGTTTAGTGATAGTTT+AGG | - | chr1.2:53498157-53498176 | MS.gene50615:intron | 25.0% |
| ! | ATAGGTTTAGTGATAGTTTA+GGG | - | chr1.2:53498158-53498177 | MS.gene50615:intron | 25.0% |
| ! | CTGCTTTCAAAAGAAAAATT+AGG | - | chr1.2:53499577-53499596 | MS.gene50615:CDS | 25.0% |
| ! | GGAAATTTCATTCAATGAAA+AGG | - | chr1.2:53497961-53497980 | MS.gene50615:CDS | 25.0% |
| ! | GGTTATATCTACAACAATTT+GGG | - | chr1.2:53499120-53499139 | MS.gene50615:intron | 25.0% |
| ! | GTATCTTAATAAGGCTAATA+GGG | - | chr1.2:53498180-53498199 | MS.gene50615:intron | 25.0% |
| ! | GTTATATCTACAACAATTTG+GGG | - | chr1.2:53499121-53499140 | MS.gene50615:intron | 25.0% |
| ! | TGGTTATATCTACAACAATT+TGG | - | chr1.2:53499119-53499138 | MS.gene50615:intron | 25.0% |
| ! | TTATATCTACAACAATTTGG+GGG | - | chr1.2:53499122-53499141 | MS.gene50615:intron | 25.0% |
| ! | TTTCATATAAGTAGCTATGT+TGG | - | chr1.2:53499696-53499715 | MS.gene50615:CDS | 25.0% |
| !! | AACTGTATATGTTTTTCCAA+CGG | - | chr1.2:53500535-53500554 | MS.gene50615:CDS | 25.0% |
| !! | TAGTTTAGGGTATCTTAATA+AGG | - | chr1.2:53498171-53498190 | MS.gene50615:intron | 25.0% |
| !! | TTAATGGGTAGTCTTAATTA+TGG | - | chr1.2:53498130-53498149 | MS.gene50615:intron | 25.0% |
| !!! | ATCAATGTTTTGCTTGTTTT+TGG | - | chr1.2:53500176-53500195 | MS.gene50615:CDS | 25.0% |
| !!! | ATTATTTTGAGACTTAAGGA+TGG | - | chr1.2:53499455-53499474 | MS.gene50615:CDS | 25.0% |
| AAAAGTTTGCAGACTGTAAA+AGG | - | chr1.2:53498788-53498807 | MS.gene50615:intron | 30.0% | |
| AAACCAAGAGAAACAATATC+AGG | + | chr1.2:53499328-53499347 | None:intergenic | 30.0% | |
| AACCAAGAGAAACAATATCA+GGG | + | chr1.2:53499327-53499346 | None:intergenic | 30.0% | |
| AAGAAAAATTAGGCTGTGTT+TGG | - | chr1.2:53499587-53499606 | MS.gene50615:CDS | 30.0% | |
| AAGCACATTATCCAAAAACA+AGG | + | chr1.2:53500476-53500495 | None:intergenic | 30.0% | |
| AGCACATTATCCAAAAACAA+GGG | + | chr1.2:53500475-53500494 | None:intergenic | 30.0% | |
| AGGTGTTTAGAGATTTCTAT+TGG | - | chr1.2:53498808-53498827 | MS.gene50615:intron | 30.0% | |
| ATAACCAACTCCAAAATGTT+TGG | + | chr1.2:53499106-53499125 | None:intergenic | 30.0% | |
| ATCTTGAGTACAAAGAGTTA+TGG | - | chr1.2:53500100-53500119 | MS.gene50615:CDS | 30.0% | |
| CTATTATGGGATTGATGTAA+CGG | + | chr1.2:53500811-53500830 | None:intergenic | 30.0% | |
| GCTGCATGTGTATTATTATT+AGG | + | chr1.2:53500763-53500782 | None:intergenic | 30.0% | |
| GGTATCTTAATAAGGCTAAT+AGG | - | chr1.2:53498179-53498198 | MS.gene50615:intron | 30.0% | |
| GGTGTTTAGAGATTTCTATT+GGG | - | chr1.2:53498809-53498828 | MS.gene50615:intron | 30.0% | |
| GTTCATAGTTTCATATAGCA+TGG | + | chr1.2:53498896-53498915 | None:intergenic | 30.0% | |
| TAAAAGAGAACAGATTACAC+CGG | - | chr1.2:53498840-53498859 | MS.gene50615:intron | 30.0% | |
| TAACCAACTCCAAAATGTTT+GGG | + | chr1.2:53499105-53499124 | None:intergenic | 30.0% | |
| TCTAACGCCTTTAAACAATA+CGG | + | chr1.2:53498451-53498470 | None:intergenic | 30.0% | |
| TCTCAAAATAATTGTTCCAC+TGG | + | chr1.2:53499447-53499466 | None:intergenic | 30.0% | |
| TTATGAGCATAGCATGAATA+AGG | + | chr1.2:53499848-53499867 | None:intergenic | 30.0% | |
| TTCTTGGGATTGTTTATAGT+GGG | - | chr1.2:53498527-53498546 | MS.gene50615:intron | 30.0% | |
| ! | AATAAGGCTAATAGGGTTTT+GGG | - | chr1.2:53498187-53498206 | MS.gene50615:intron | 30.0% |
| ! | GAAAACATGAATTTTTCCGT+TGG | + | chr1.2:53500554-53500573 | None:intergenic | 30.0% |
| ! | TAATAAGGCTAATAGGGTTT+TGG | - | chr1.2:53498186-53498205 | MS.gene50615:intron | 30.0% |
| !! | ATTCTGCAAACAATTGGTTT+TGG | - | chr1.2:53499352-53499371 | MS.gene50615:intron | 30.0% |
| !! | TTGTTGATTCTGCAAACAAT+TGG | - | chr1.2:53499346-53499365 | MS.gene50615:intron | 30.0% |
| !!! | TGTTGCGGTTTTGAATTTTA+AGG | - | chr1.2:53498417-53498436 | MS.gene50615:intron | 30.0% |
| !!! | TTCTGCAAACAATTGGTTTT+GGG | - | chr1.2:53499353-53499372 | MS.gene50615:intron | 30.0% |
| AACTATATGAGAGGTAGACA+TGG | + | chr1.2:53499883-53499902 | None:intergenic | 35.0% | |
| AACTGCAAACTCATAGCATA+AGG | + | chr1.2:53498112-53498131 | None:intergenic | 35.0% | |
| AATCTGAATCCCACACTATT+AGG | + | chr1.2:53499424-53499443 | None:intergenic | 35.0% | |
| AGATACATACGAAGCGATTA+GGG | - | chr1.2:53498470-53498489 | MS.gene50615:intron | 35.0% | |
| AGCAATTCCATGTGCAATTA+TGG | + | chr1.2:53500133-53500152 | None:intergenic | 35.0% | |
| AGCATGTCAGAATCTTTCAA+AGG | - | chr1.2:53499251-53499270 | MS.gene50615:intron | 35.0% | |
| AGGTAGACATGGAAACTAAA+AGG | + | chr1.2:53499872-53499891 | None:intergenic | 35.0% | |
| ATATGCAATTGAGCTCGAAA+TGG | + | chr1.2:53500238-53500257 | None:intergenic | 35.0% | |
| ATTAGGGATGAATTCTGTTG+AGG | - | chr1.2:53498486-53498505 | MS.gene50615:intron | 35.0% | |
| CAATTAAAGAAAAAAGCCCG+CGG | - | chr1.2:53500697-53500716 | MS.gene50615:CDS | 35.0% | |
| CAGAATCTTTCAAAGGCTTA+TGG | - | chr1.2:53499258-53499277 | MS.gene50615:intron | 35.0% | |
| CGAATATGATGATTGCTTTG+GGG | - | chr1.2:53498653-53498672 | MS.gene50615:intron | 35.0% | |
| CTGACATAAAATAGAGTGCA+GGG | - | chr1.2:53499510-53499529 | MS.gene50615:CDS | 35.0% | |
| CTTCTTGGGATTGTTTATAG+TGG | - | chr1.2:53498526-53498545 | MS.gene50615:intron | 35.0% | |
| GAAGAATTGGAATCTCAGTT+CGG | - | chr1.2:53498603-53498622 | MS.gene50615:intron | 35.0% | |
| GAAGTGTATCTGCAAGAATA+GGG | - | chr1.2:53498995-53499014 | MS.gene50615:intron | 35.0% | |
| GATGGAAAGAACTATATGAG+AGG | + | chr1.2:53499892-53499911 | None:intergenic | 35.0% | |
| GCAATTCCATGTGCAATTAT+GGG | + | chr1.2:53500132-53500151 | None:intergenic | 35.0% | |
| GCGAATATGATGATTGCTTT+GGG | - | chr1.2:53498652-53498671 | MS.gene50615:intron | 35.0% | |
| GCTATGAGTTTGCAGTTAAT+GGG | - | chr1.2:53498115-53498134 | MS.gene50615:intron | 35.0% | |
| GGACATATACCTAATAGTGT+GGG | - | chr1.2:53499412-53499431 | MS.gene50615:intron | 35.0% | |
| GGTTTAGCTGCATTGAAAAT+TGG | - | chr1.2:53497989-53498008 | MS.gene50615:CDS | 35.0% | |
| TAAGAACTAGCAACAGTGTT+TGG | + | chr1.2:53499786-53499805 | None:intergenic | 35.0% | |
| TATGGTGATATTGGAAGGTA+TGG | - | chr1.2:53499276-53499295 | MS.gene50615:intron | 35.0% | |
| TCAAAGGCTTATGGTGATAT+TGG | - | chr1.2:53499267-53499286 | MS.gene50615:intron | 35.0% | |
| TCAAATAAGCCATTCCAAAC+AGG | - | chr1.2:53499821-53499840 | MS.gene50615:CDS | 35.0% | |
| TCAATTGTATCTGCATGATG+TGG | + | chr1.2:53499231-53499250 | None:intergenic | 35.0% | |
| TCATTCAATGAAAAGGAGCT+TGG | - | chr1.2:53497968-53497987 | MS.gene50615:CDS | 35.0% | |
| TCTGACATAAAATAGAGTGC+AGG | - | chr1.2:53499509-53499528 | MS.gene50615:CDS | 35.0% | |
| TGCGAATATGATGATTGCTT+TGG | - | chr1.2:53498651-53498670 | MS.gene50615:intron | 35.0% | |
| TGCTATGAGTTTGCAGTTAA+TGG | - | chr1.2:53498114-53498133 | MS.gene50615:intron | 35.0% | |
| TGGACATATACCTAATAGTG+TGG | - | chr1.2:53499411-53499430 | MS.gene50615:intron | 35.0% | |
| ! | AATTTAGACTTGGTTGTTCC+CGG | - | chr1.2:53500373-53500392 | MS.gene50615:CDS | 35.0% |
| ! | GAATGCTTTGAGCATTTCTT+CGG | + | chr1.2:53497933-53497952 | None:intergenic | 35.0% |
| ! | GATTAAGGAGATGACTTTTG+AGG | - | chr1.2:53498345-53498364 | MS.gene50615:intron | 35.0% |
| ! | GGCTGCAATTCCAATATTTT+AGG | + | chr1.2:53500576-53500595 | None:intergenic | 35.0% |
| ! | TGAGTTGGCTAATGTTAAGA+CGG | - | chr1.2:53498273-53498292 | MS.gene50615:intron | 35.0% |
| ! | TGTTTGGAATGGCTTATTTG+AGG | + | chr1.2:53499822-53499841 | None:intergenic | 35.0% |
| ! | TTCCCTGATATTGTTTCTCT+TGG | - | chr1.2:53499322-53499341 | MS.gene50615:intron | 35.0% |
| !! | CGCAGAAGATTTTGAAGAAT+TGG | - | chr1.2:53498590-53498609 | MS.gene50615:intron | 35.0% |
| !! | GCAAATTCAAGAGCTTTTTC+AGG | + | chr1.2:53498043-53498062 | None:intergenic | 35.0% |
| !! | GTGTTTGTGTTGATGATGTT+AGG | - | chr1.2:53498227-53498246 | MS.gene50615:intron | 35.0% |
| !!! | TGCGGTTTTGAATTTTAAGG+AGG | - | chr1.2:53498420-53498439 | MS.gene50615:intron | 35.0% |
| !!! | TTGTTTCTGTCCCTTGTTTT+TGG | - | chr1.2:53500462-53500481 | MS.gene50615:CDS | 35.0% |
| ACACCAAATCAGAACTCTCT+TGG | + | chr1.2:53499986-53500005 | None:intergenic | 40.0% | |
| AGAAACCTCCATGATATCCT+TGG | + | chr1.2:53499202-53499221 | None:intergenic | 40.0% | |
| AGCAGCAAGTTATAGATGCT+TGG | - | chr1.2:53500617-53500636 | MS.gene50615:CDS | 40.0% | |
| AGCATGAATAAGGACCTGTT+TGG | + | chr1.2:53499838-53499857 | None:intergenic | 40.0% | |
| AGCTCTTGTGCTTGTATCAA+TGG | - | chr1.2:53498744-53498763 | MS.gene50615:intron | 40.0% | |
| AGGAAGATAGTGAGGAGTTA+GGG | - | chr1.2:53498365-53498384 | MS.gene50615:intron | 40.0% | |
| AGGCTTATGGTGATATTGGA+AGG | - | chr1.2:53499271-53499290 | MS.gene50615:intron | 40.0% | |
| ATAGTGAGGAGTTAGGGAAA+GGG | - | chr1.2:53498371-53498390 | MS.gene50615:intron | 40.0% | |
| ATGCTGCAGGTGTACTATTA+TGG | + | chr1.2:53500825-53500844 | None:intergenic | 40.0% | |
| ATGTAACGGTATGTCAGGTT+GGG | + | chr1.2:53500797-53500816 | None:intergenic | 40.0% | |
| CTCTTGTGCTTGTATCAATG+GGG | - | chr1.2:53498746-53498765 | MS.gene50615:intron | 40.0% | |
| CTGCTGAAACTCAATTGCAA+GGG | + | chr1.2:53500602-53500621 | None:intergenic | 40.0% | |
| GAAACTCAATTGCAAGGGAA+TGG | + | chr1.2:53500597-53500616 | None:intergenic | 40.0% | |
| GAAAGGGAATAGGGATTTAG+CGG | - | chr1.2:53498387-53498406 | MS.gene50615:intron | 40.0% | |
| GAAGCAGGCTATTCCTTATT+TGG | - | chr1.2:53499044-53499063 | MS.gene50615:intron | 40.0% | |
| GAATAAGGACCTGTTTGGAA+TGG | + | chr1.2:53499833-53499852 | None:intergenic | 40.0% | |
| GAGATACATACGAAGCGATT+AGG | - | chr1.2:53498469-53498488 | MS.gene50615:intron | 40.0% | |
| GAGCACAGAAGAGAATATAG+TGG | + | chr1.2:53499962-53499981 | None:intergenic | 40.0% | |
| GATATCATGGAGGTTTCTCT+TGG | - | chr1.2:53499204-53499223 | MS.gene50615:intron | 40.0% | |
| GATTGATGTAACGGTATGTC+AGG | + | chr1.2:53500802-53500821 | None:intergenic | 40.0% | |
| GCAGCAAGTTATAGATGCTT+GGG | - | chr1.2:53500618-53500637 | MS.gene50615:CDS | 40.0% | |
| GCTCTTGTGCTTGTATCAAT+GGG | - | chr1.2:53498745-53498764 | MS.gene50615:intron | 40.0% | |
| TCAACGTAACATACTGTGAG+TGG | - | chr1.2:53500428-53500447 | MS.gene50615:CDS | 40.0% | |
| TCAGCAGCACTTTCCAAATA+AGG | + | chr1.2:53499060-53499079 | None:intergenic | 40.0% | |
| TCATGCTGTGCAATTTGAGT+TGG | - | chr1.2:53498258-53498277 | MS.gene50615:intron | 40.0% | |
| TGCAAATGAGGTTCCTATGA+AGG | - | chr1.2:53500726-53500745 | MS.gene50615:CDS | 40.0% | |
| TGCTGCAGGTGTACTATTAT+GGG | + | chr1.2:53500824-53500843 | None:intergenic | 40.0% | |
| TGTCTAGGAGAGATTTGAGT+GGG | + | chr1.2:53497854-53497873 | None:intergenic | 40.0% | |
| TTGGGTAGGTTAGAGAATGA+GGG | - | chr1.2:53498205-53498224 | MS.gene50615:intron | 40.0% | |
| TTGTCTAGGAGAGATTTGAG+TGG | + | chr1.2:53497855-53497874 | None:intergenic | 40.0% | |
| TTTAGCGGAAGCTTATGTTG+CGG | - | chr1.2:53498402-53498421 | MS.gene50615:intron | 40.0% | |
| TTTGGGTAGGTTAGAGAATG+AGG | - | chr1.2:53498204-53498223 | MS.gene50615:intron | 40.0% | |
| ! | CGGAAGGTACAATTTAGACT+TGG | - | chr1.2:53500363-53500382 | MS.gene50615:CDS | 40.0% |
| ! | GAGCATTTCTTCGGTTGTTT+TGG | + | chr1.2:53497924-53497943 | None:intergenic | 40.0% |
| ! | GATTGTTTATAGTGGGATGG+AGG | - | chr1.2:53498534-53498553 | MS.gene50615:intron | 40.0% |
| ! | GGAAGTGTATCTGCAAGAAT+AGG | - | chr1.2:53498994-53499013 | MS.gene50615:intron | 40.0% |
| ! | GTTGTTGTTGCTTACAGGTA+AGG | - | chr1.2:53499020-53499039 | MS.gene50615:intron | 40.0% |
| ! | TCACCAAGAGAGTTCTGATT+TGG | - | chr1.2:53499980-53499999 | MS.gene50615:CDS | 40.0% |
| ! | TCGATGATTTTGCGTTGTCT+AGG | + | chr1.2:53497869-53497888 | None:intergenic | 40.0% |
| ! | TGGGATTGTTTATAGTGGGA+TGG | - | chr1.2:53498531-53498550 | MS.gene50615:intron | 40.0% |
| !! | AGAGAATCTTCGGAAGTGTT+TGG | - | chr1.2:53498321-53498340 | MS.gene50615:intron | 40.0% |
| !! | AGCTTTGGTCCCAAACATTT+TGG | - | chr1.2:53499093-53499112 | MS.gene50615:intron | 40.0% |
| !! | ATTTGGAAAGTGCTGCTGAA+CGG | - | chr1.2:53499061-53499080 | MS.gene50615:intron | 40.0% |
| !! | GACTTTTGAGGAAGATAGTG+AGG | - | chr1.2:53498357-53498376 | MS.gene50615:intron | 40.0% |
| !! | GAGAGATTTGAGTGGGTTTT+TGG | + | chr1.2:53497847-53497866 | None:intergenic | 40.0% |
| !! | TATGTCAGGTTGGGAGTTAT+TGG | + | chr1.2:53500788-53500807 | None:intergenic | 40.0% |
| !! | TCGGAAGTGTTTGGAGATTA+AGG | - | chr1.2:53498330-53498349 | MS.gene50615:intron | 40.0% |
| !! | TTGAGTGGGTTTTTGGATGA+GGG | + | chr1.2:53497840-53497859 | None:intergenic | 40.0% |
| !! | TTTGAGTGGGTTTTTGGATG+AGG | + | chr1.2:53497841-53497860 | None:intergenic | 40.0% |
| !!! | CATTTCTTCGGTTGTTTTGG+CGG | + | chr1.2:53497921-53497940 | None:intergenic | 40.0% |
| AAGAGAACAGATTACACCGG+TGG | - | chr1.2:53498843-53498862 | MS.gene50615:intron | 45.0% | |
| AATTGCACAGCATGAAGCAC+AGG | + | chr1.2:53498253-53498272 | None:intergenic | 45.0% | |
| AGGAGTTAGGGAAAGGGAAT+AGG | - | chr1.2:53498377-53498396 | MS.gene50615:intron | 45.0% | |
| ATAGATGCTTGGGAAAGCCA+TGG | - | chr1.2:53500628-53500647 | MS.gene50615:CDS | 45.0% | |
| CGCATGATAGGAAGCTTCTT+GGG | - | chr1.2:53498512-53498531 | MS.gene50615:intron | 45.0% | |
| CTAATGTTAAGACGGCGATG+GGG | - | chr1.2:53498281-53498300 | MS.gene50615:intron | 45.0% | |
| CTTTACGAGAACCTCTGAAC+CGG | + | chr1.2:53500395-53500414 | None:intergenic | 45.0% | |
| GAACGGTTGAAAGAGAGCTT+TGG | - | chr1.2:53499078-53499097 | MS.gene50615:intron | 45.0% | |
| GAGGAAGATAGTGAGGAGTT+AGG | - | chr1.2:53498364-53498383 | MS.gene50615:intron | 45.0% | |
| GATAGTGAGGAGTTAGGGAA+AGG | - | chr1.2:53498370-53498389 | MS.gene50615:intron | 45.0% | |
| GATGTAACGGTATGTCAGGT+TGG | + | chr1.2:53500798-53500817 | None:intergenic | 45.0% | |
| GCTAATGTTAAGACGGCGAT+GGG | - | chr1.2:53498280-53498299 | MS.gene50615:intron | 45.0% | |
| GCTGCTGAAACTCAATTGCA+AGG | + | chr1.2:53500603-53500622 | None:intergenic | 45.0% | |
| GGAGTTAGGGAAAGGGAATA+GGG | - | chr1.2:53498378-53498397 | MS.gene50615:intron | 45.0% | |
| GGCGCTTCCGTATTGTTTAA+AGG | - | chr1.2:53498441-53498460 | MS.gene50615:intron | 45.0% | |
| GTGTATCTGCAAGAATAGGG+TGG | - | chr1.2:53498998-53499017 | MS.gene50615:intron | 45.0% | |
| TAAACTGTTCGGGATTGACG+TGG | + | chr1.2:53500874-53500893 | None:intergenic | 45.0% | |
| TATGCCTCAGAAACTTCCAC+CGG | + | chr1.2:53498862-53498881 | None:intergenic | 45.0% | |
| TGCGATTTCGTTGCTGAAGA+GGG | - | chr1.2:53498927-53498946 | MS.gene50615:intron | 45.0% | |
| TTTACGAGAACCTCTGAACC+GGG | + | chr1.2:53500394-53500413 | None:intergenic | 45.0% | |
| ! | GCTCAAAGCATTCAGTGAGA+TGG | - | chr1.2:53497940-53497959 | MS.gene50615:CDS | 45.0% |
| !! | AAGAGGCGCTAGAGAATCTT+CGG | - | chr1.2:53498311-53498330 | MS.gene50615:intron | 45.0% |
| !! | GGAAGTTTCTGAGGCATACT+CGG | - | chr1.2:53498864-53498883 | MS.gene50615:intron | 45.0% |
| !! | GGGGAAAGCGTTATGTAATC+AGG | - | chr1.2:53498765-53498784 | MS.gene50615:intron | 45.0% |
| !!! | AGGCTAATAGGGTTTTGGGT+AGG | - | chr1.2:53498191-53498210 | MS.gene50615:intron | 45.0% |
| !!! | GGTCCCAAACATTTTGGAGT+TGG | - | chr1.2:53499099-53499118 | MS.gene50615:intron | 45.0% |
| CCATGTGCAATTATGGGCTC+AGG | + | chr1.2:53500126-53500145 | None:intergenic | 50.0% | |
| CCTGAGCCCATAATTGCACA+TGG | - | chr1.2:53500123-53500142 | MS.gene50615:CDS | 50.0% | |
| CGGTTCAGAGGTTCTCGTAA+AGG | - | chr1.2:53500393-53500412 | MS.gene50615:CDS | 50.0% | |
| CTGCGATTTCGTTGCTGAAG+AGG | - | chr1.2:53498926-53498945 | MS.gene50615:intron | 50.0% | |
| CTGTTGAGGTTGCGCATGAT+AGG | - | chr1.2:53498500-53498519 | MS.gene50615:intron | 50.0% | |
| CTTCTTCTGCACTTGCTCCA+TGG | + | chr1.2:53500648-53500667 | None:intergenic | 50.0% | |
| GAAGCTTGATCGTGAAGGTG+AGG | - | chr1.2:53498015-53498034 | MS.gene50615:CDS | 50.0% | |
| GCGCATGATAGGAAGCTTCT+TGG | - | chr1.2:53498511-53498530 | MS.gene50615:intron | 50.0% | |
| GCTTACAGGTAAGGTGAAGC+AGG | - | chr1.2:53499029-53499048 | MS.gene50615:intron | 50.0% | |
| GGAAAGGGAAGAGCCTTCAT+AGG | + | chr1.2:53500742-53500761 | None:intergenic | 50.0% | |
| GGCTAATGTTAAGACGGCGA+TGG | - | chr1.2:53498279-53498298 | MS.gene50615:intron | 50.0% | |
| GGGAGATACGATGAAGCTGT+TGG | - | chr1.2:53498673-53498692 | MS.gene50615:intron | 50.0% | |
| GGTAGCCAAGGATATCATGG+AGG | - | chr1.2:53499194-53499213 | MS.gene50615:intron | 50.0% | |
| GTGTGGGATTCAGATTCCAG+TGG | - | chr1.2:53499428-53499447 | MS.gene50615:intron | 50.0% | |
| TACACCGGTGGAAGTTTCTG+AGG | - | chr1.2:53498855-53498874 | MS.gene50615:intron | 50.0% | |
| TGCGGTAGCCAAGGATATCA+TGG | - | chr1.2:53499191-53499210 | MS.gene50615:intron | 50.0% | |
| TGGGATGGAGGATCATGAGA+AGG | - | chr1.2:53498546-53498565 | MS.gene50615:intron | 50.0% | |
| ! | GGGGGCAGCATATTTAGAGT+TGG | - | chr1.2:53499140-53499159 | MS.gene50615:intron | 50.0% |
| ! | GGGTGGTTGTTGTTGCTTAC+AGG | - | chr1.2:53499015-53499034 | MS.gene50615:intron | 50.0% |
| ! | GGTCTGAAGCTTGATCGTGA+AGG | - | chr1.2:53498010-53498029 | MS.gene50615:CDS | 50.0% |
| !! | GGCGTTGGAGCAGAATGTTT+TGG | - | chr1.2:53498567-53498586 | MS.gene50615:intron | 50.0% |
| !! | TGTGTCAGGTTGGGAGTTAC+TGG | + | chr1.2:53500848-53500867 | None:intergenic | 50.0% |
| ACTGTTCGGGATTGACGTGG+CGG | + | chr1.2:53500871-53500890 | None:intergenic | 55.0% | |
| ATGTTAAGACGGCGATGGGG+AGG | - | chr1.2:53498284-53498303 | MS.gene50615:intron | 55.0% | |
| CCTCATTTGCAGAGACACCG+CGG | + | chr1.2:53500717-53500736 | None:intergenic | 55.0% | |
| CTCATTTGCAGAGACACCGC+GGG | + | chr1.2:53500716-53500735 | None:intergenic | 55.0% | |
| CTTGGTTGTTCCCGGTTCAG+AGG | - | chr1.2:53500381-53500400 | MS.gene50615:CDS | 55.0% | |
| GCAGATGTTTGCGGTAGCCA+AGG | - | chr1.2:53499182-53499201 | MS.gene50615:intron | 55.0% | |
| GTCAGCAGCGCAGATGTTTG+CGG | - | chr1.2:53499173-53499192 | MS.gene50615:intron | 55.0% | |
| TGGGAGTTACTGGATGCTGC+AGG | + | chr1.2:53500838-53500857 | None:intergenic | 55.0% | |
| ! | AACATCTGCGCTGCTGACTG+AGG | + | chr1.2:53499171-53499190 | None:intergenic | 55.0% |
| ! | GGAGGATCATGAGAAGGCGT+TGG | - | chr1.2:53498552-53498571 | MS.gene50615:intron | 55.0% |
| ACGTGGCGGTGTGTCAGGTT+GGG | + | chr1.2:53500857-53500876 | None:intergenic | 60.0% | |
| CCACAAGAGCAGCACTCGGA+GGG | - | chr1.2:53498973-53498992 | MS.gene50615:intron | 60.0% | |
| CCGCGGTGTCTCTGCAAATG+AGG | - | chr1.2:53500714-53500733 | MS.gene50615:CDS | 60.0% | |
| GATTGACGTGGCGGTGTGTC+AGG | + | chr1.2:53500862-53500881 | None:intergenic | 60.0% | |
| GCTCCCACAAGAGCAGCACT+CGG | - | chr1.2:53498969-53498988 | MS.gene50615:intron | 60.0% | |
| ! | CCTCCGAGTGCTGCTCTTGT+GGG | + | chr1.2:53498975-53498994 | None:intergenic | 60.0% |
| CCCACAAGAGCAGCACTCGG+AGG | - | chr1.2:53498972-53498991 | MS.gene50615:intron | 65.0% | |
| GACGTGGCGGTGTGTCAGGT+TGG | + | chr1.2:53500858-53500877 | None:intergenic | 65.0% | |
| GGCGATGGGGAGGAGAGAAG+AGG | - | chr1.2:53498294-53498313 | MS.gene50615:intron | 65.0% | |
| ! | CCCTCCGAGTGCTGCTCTTG+TGG | + | chr1.2:53498976-53498995 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53497830 | 53500894 | 53497830 | ID=MS.gene50615 |
| chr1.2 | mRNA | 53497830 | 53500894 | 53497830 | ID=MS.gene50615.t1;Parent=MS.gene50615 |
| chr1.2 | exon | 53499432 | 53500894 | 53499432 | ID=MS.gene50615.t1.exon1;Parent=MS.gene50615.t1 |
| chr1.2 | CDS | 53499432 | 53500894 | 53499432 | ID=cds.MS.gene50615.t1;Parent=MS.gene50615.t1 |
| chr1.2 | exon | 53497830 | 53498130 | 53497830 | ID=MS.gene50615.t1.exon2;Parent=MS.gene50615.t1 |
| chr1.2 | CDS | 53497830 | 53498130 | 53497830 | ID=cds.MS.gene50615.t1;Parent=MS.gene50615.t1 |
| Gene Sequence |
| Protein sequence |
