AlfalfaGEDB | MS.gene54299

M. sativa cultivar XinJiangDaYe / MS.gene54299

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54299.t1	KEH36594.1	68.1	313	9	1	1	222	1	313	3.40E-88	334.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54299.t1	Q9LJG8	45.0	151	73	4	20	168	81	223	2.9e-27	123.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54299.t1	A0A072V3I8	68.1	313	9	1	1	222	1	313	2.5e-88	334.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene54299.t1	TF	Trihelix

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050084	MS.gene54299	0.848603	5.52E-60	-1.69E-46
MS.gene050085	MS.gene54299	0.85953	3.88E-63	-1.69E-46
MS.gene050114	MS.gene54299	0.804468	2.13E-49	-1.69E-46
MS.gene050359	MS.gene54299	0.803035	4.22E-49	-1.69E-46
MS.gene050384	MS.gene54299	0.807641	4.58E-50	-1.69E-46
MS.gene050386	MS.gene54299	0.82254	2.24E-53	-1.69E-46
MS.gene050646	MS.gene54299	0.82726	1.73E-54	-1.69E-46
MS.gene050654	MS.gene54299	0.849122	3.96E-60	-1.69E-46
MS.gene050689	MS.gene54299	0.806025	1.01E-49	-1.69E-46
MS.gene050838	MS.gene54299	0.812677	3.76E-51	-1.69E-46
MS.gene051003	MS.gene54299	0.818655	1.75E-52	-1.69E-46
MS.gene051343	MS.gene54299	0.86569	4.92E-65	-1.69E-46
MS.gene051676	MS.gene54299	0.816648	4.96E-52	-1.69E-46
MS.gene051856	MS.gene54299	0.804058	2.59E-49	-1.69E-46
MS.gene051902	MS.gene54299	0.81059	1.07E-50	-1.69E-46
MS.gene051975	MS.gene54299	0.833792	4.35E-56	-1.69E-46
MS.gene052342	MS.gene54299	0.817142	3.85E-52	-1.69E-46
MS.gene052434	MS.gene54299	0.831581	1.54E-55	-1.69E-46
MS.gene053058	MS.gene54299	0.874162	8.38E-68	-1.69E-46
MS.gene053564	MS.gene54299	0.82327	1.52E-53	-1.69E-46
MS.gene054823	MS.gene54299	0.809433	1.90E-50	-1.69E-46
MS.gene05517	MS.gene54299	0.802595	5.21E-49	-1.69E-46
MS.gene055311	MS.gene54299	0.837112	6.30E-57	-1.69E-46
MS.gene055313	MS.gene54299	0.815049	1.13E-51	-1.69E-46
MS.gene055314	MS.gene54299	0.819604	1.06E-52	-1.69E-46
MS.gene055513	MS.gene54299	0.8145	1.49E-51	-1.69E-46
MS.gene056045	MS.gene54299	0.817419	3.33E-52	-1.69E-46
MS.gene056097	MS.gene54299	0.827936	1.19E-54	-1.69E-46
MS.gene056181	MS.gene54299	0.86117	1.24E-63	-1.69E-46
MS.gene056509	MS.gene54299	0.810212	1.29E-50	-1.69E-46
MS.gene056787	MS.gene54299	0.836509	8.98E-57	-1.69E-46
MS.gene056831	MS.gene54299	0.808639	2.81E-50	-1.69E-46
MS.gene056986	MS.gene54299	0.815667	8.22E-52	-1.69E-46
MS.gene05781	MS.gene54299	0.821391	4.14E-53	-1.69E-46
MS.gene057999	MS.gene54299	0.807025	6.18E-50	-1.69E-46
MS.gene058054	MS.gene54299	0.815754	7.86E-52	-1.69E-46
MS.gene058261	MS.gene54299	0.802807	4.71E-49	-1.69E-46
MS.gene058292	MS.gene54299	0.824094	9.72E-54	-1.69E-46
MS.gene058638	MS.gene54299	0.815952	7.10E-52	-1.69E-46
MS.gene058639	MS.gene54299	0.820017	8.56E-53	-1.69E-46
MS.gene058646	MS.gene54299	0.81557	8.64E-52	-1.69E-46
MS.gene058654	MS.gene54299	0.801304	9.59E-49	-1.69E-46
MS.gene059007	MS.gene54299	0.838318	3.09E-57	-1.69E-46
MS.gene059146	MS.gene54299	0.829861	4.06E-55	-1.69E-46
MS.gene059171	MS.gene54299	0.802693	4.97E-49	-1.69E-46
MS.gene059360	MS.gene54299	0.833179	6.19E-56	-1.69E-46
MS.gene06010	MS.gene54299	0.815417	9.35E-52	-1.69E-46
MS.gene06011	MS.gene54299	0.800023	1.75E-48	-1.69E-46
MS.gene060296	MS.gene54299	0.815092	1.10E-51	-1.69E-46
MS.gene060563	MS.gene54299	0.804962	1.68E-49	-1.69E-46
MS.gene060870	MS.gene54299	0.808049	3.75E-50	-1.69E-46
MS.gene060933	MS.gene54299	0.805739	1.15E-49	-1.69E-46
MS.gene061006	MS.gene54299	0.822378	2.45E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54299.t1	MTR_2g016140	96.875	160	5	0	1	160	1	160	2.30e-117	338
MS.gene54299.t1	MTR_2g016140	93.846	65	4	0	161	225	252	316	3.21e-35	127
MS.gene54299.t1	MTR_2g016140	96.875	160	5	0	1	160	1	160	4.69e-117	337
MS.gene54299.t1	MTR_2g016140	100.000	62	0	0	161	222	252	313	9.66e-36	129
MS.gene54299.t1	MTR_4g079960	69.421	121	34	2	19	138	27	145	1.54e-53	174
MS.gene54299.t1	MTR_4g079960	68.750	64	19	1	161	223	240	303	1.92e-20	88.2
MS.gene54299.t1	MTR_4g079960	66.154	130	41	2	11	139	19	146	2.15e-53	174
MS.gene54299.t1	MTR_4g079960	66.667	66	22	0	161	226	240	305	1.12e-21	91.7
MS.gene54299.t1	MTR_4g079960	68.852	122	35	2	19	139	27	146	3.24e-53	174
MS.gene54299.t1	MTR_4g079960	67.742	62	20	0	161	222	240	301	1.65e-20	88.6
MS.gene54299.t1	MTR_8g022290	53.077	130	56	3	19	144	64	192	2.00e-29	113
MS.gene54299.t1	MTR_8g022290	43.697	119	50	5	110	218	228	339	8.01e-17	79.0
MS.gene54299.t1	MTR_2g092960	44.776	134	70	3	11	144	34	163	4.94e-29	115
MS.gene54299.t1	MTR_6g486270	27.511	229	118	7	23	213	130	348	2.02e-24	100
MS.gene54299.t1	MTR_2g102227	31.818	242	125	7	8	214	257	493	2.95e-23	97.8
MS.gene54299.t1	MTR_1g061600	37.624	101	57	3	23	122	133	228	5.13e-17	79.7
MS.gene54299.t1	MTR_1g037650	37.755	98	54	2	18	115	33	123	2.33e-14	69.3
MS.gene54299.t1	MTR_3g014280	37.755	98	54	2	18	115	33	123	8.01e-14	70.1
MS.gene54299.t1	MTR_4g117990	31.915	94	62	2	22	114	43	135	3.79e-12	65.1
MS.gene54299.t1	MTR_5g017500	23.881	201	135	6	23	209	22	218	2.75e-11	61.6
MS.gene54299.t1	MTR_7g081190	34.783	69	45	0	22	90	45	113	8.81e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54299.t1	AT3G11100	42.017	238	95	5	19	222	18	246	1.45e-47	157
MS.gene54299.t1	AT5G05550	42.259	239	88	6	19	222	20	243	4.86e-47	156
MS.gene54299.t1	AT5G05550	42.259	239	88	6	19	222	20	243	6.42e-47	156
MS.gene54299.t1	AT5G05550	42.918	233	83	6	19	216	20	237	6.16e-46	153
MS.gene54299.t1	AT3G58630	48.333	180	64	5	3	159	2	175	1.52e-43	149
MS.gene54299.t1	AT3G58630	52.857	70	31	1	161	230	242	309	1.91e-16	77.4
MS.gene54299.t1	AT3G58630	48.333	180	64	5	3	159	2	175	1.76e-43	149
MS.gene54299.t1	AT3G58630	51.316	76	34	2	161	235	242	315	1.90e-16	77.4
MS.gene54299.t1	AT3G14180	50.000	126	58	3	19	142	80	202	4.10e-35	130
MS.gene54299.t1	AT3G14180	51.852	54	26	0	161	214	356	409	4.87e-12	65.1
MS.gene54299.t1	AT3G24490	29.358	218	122	5	23	213	90	302	2.88e-25	101
MS.gene54299.t1	AT1G54060	51.020	98	44	2	19	116	90	183	1.07e-21	92.8
MS.gene54299.t1	AT3G10030	35.433	127	74	3	23	145	161	283	2.47e-20	89.7
MS.gene54299.t1	AT3G10030	35.433	127	74	3	23	145	161	283	2.75e-20	89.4
MS.gene54299.t1	AT3G54390	38.261	115	60	3	5	115	16	123	8.40e-18	80.9
MS.gene54299.t1	AT3G54390	38.261	115	60	3	5	115	32	139	9.94e-18	80.9
MS.gene54299.t1	AT2G44730	32.979	94	61	2	22	114	63	155	2.17e-11	63.2

Find 57 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAGAGGATGCAGATGTTTA+TGG	0.218617	2.3:+69333577	MS.gene54299:CDS
CATCGGAAATTTGCTAATTC+TGG	0.236718	2.3:+69333149	MS.gene54299:CDS
GTTATGCATGATAGGGCTTT+TGG	0.280310	2.3:+69333794	MS.gene54299:intron
ACTGAGGCAGATGGTGGATT+TGG	0.320650	2.3:+69333517	MS.gene54299:CDS
AACTTCTTAGCACTGAAATT+AGG	0.324747	2.3:-69333065	None:intergenic
TTCCACTCTCGTCGATGCAT+GGG	0.378747	2.3:+69332800	MS.gene54299:CDS
GTCGAATGTACCGCAATTGC+AGG	0.389100	2.3:-69333185	None:intergenic
GACCAACAATCCTCGCGAAC+GGG	0.390355	2.3:-69332765	None:intergenic
CTTCCACTCTCGTCGATGCA+TGG	0.395037	2.3:+69332799	MS.gene54299:CDS
GCGAAGGCGATAGAGAGTTT+TGG	0.411580	2.3:+69333464	MS.gene54299:intron
ATTAAGCGTGGAAAACCATC+TGG	0.413416	2.3:+69333623	MS.gene54299:CDS
ATCAATTTCTTCACCGGTGG+CGG	0.426236	2.3:+69333088	MS.gene54299:CDS
AAAGAATCGTGGTGAAAATC+CGG	0.442007	2.3:-69332720	None:intergenic
GGAAAACCATCTGGGTCTAA+TGG	0.443061	2.3:+69333632	MS.gene54299:CDS
GTAATCTTCGTCAGAAAGAT+TGG	0.446554	2.3:+69332850	MS.gene54299:CDS
TCCCCGTTCGCGAGGATTGT+TGG	0.451755	2.3:+69332763	MS.gene54299:CDS
GAAGTTATCAATTTCTTCAC+CGG	0.471334	2.3:+69333082	MS.gene54299:CDS
GATGCTGTTAACGCTCTTCA+TGG	0.472381	2.3:+69332885	MS.gene54299:CDS
GCTAGGGTTACGGAATCTAA+TGG	0.474097	2.3:+69332990	MS.gene54299:CDS
GGCGGTGACACCGTCGCCGC+CGG	0.485160	2.3:+69333106	MS.gene54299:CDS
TATGGATACTCAAGTTCAGC+TGG	0.498348	2.3:+69333595	MS.gene54299:CDS
GGCGACGGTGTCACCGCCAC+CGG	0.505328	2.3:-69333101	None:intergenic
CGGAAATTTGCTAATTCTGG+TGG	0.506455	2.3:+69333152	MS.gene54299:CDS
CTCTTCCGTTGATTCCTCAT+CGG	0.506683	2.3:+69333132	MS.gene54299:CDS
CCTTGAGACCCACTGTCCTC+AGG	0.511788	2.3:-69333818	None:intergenic
GGAAGAGCCACCGGCGGCGA+CGG	0.520111	2.3:-69333116	None:intergenic
CCTGAGGACAGTGGGTCTCA+AGG	0.530873	2.3:+69333818	MS.gene54299:CDS
TGGTGAAATGTATGAGAGAG+TGG	0.540008	2.3:+69333484	MS.gene54299:CDS
CTGAGGACAGTGGGTCTCAA+GGG	0.546675	2.3:+69333819	MS.gene54299:CDS
GGAATCAACGGAAGAGCCAC+CGG	0.563599	2.3:-69333125	None:intergenic
ACAATCCTCGCGAACGGGGA+CGG	0.571999	2.3:-69332760	None:intergenic
TCGTCGATGCATGGGGTCGT+CGG	0.574131	2.3:+69332808	MS.gene54299:CDS
TGACCAACAATCCTCGCGAA+CGG	0.577799	2.3:-69332766	None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG	0.579375	2.3:+69333561	MS.gene54299:CDS
GGTGACACCGTCGCCGCCGG+TGG	0.582058	2.3:+69333109	MS.gene54299:CDS
ATCTCACCATTAGACCCAGA+TGG	0.584691	2.3:-69333638	None:intergenic
TTATTCATCACCTGCAATTG+CGG	0.591019	2.3:+69333175	MS.gene54299:CDS
CGAACGGGGACGGTGCGTGA+CGG	0.602447	2.3:-69332750	None:intergenic
TGGTGGATTTGGAGAAACAA+AGG	0.604782	2.3:+69333528	MS.gene54299:CDS
ACGGGGACGGTGCGTGACGG+TGG	0.605580	2.3:-69332747	None:intergenic
ACCCCATGCATCGACGAGAG+TGG	0.606737	2.3:-69332802	None:intergenic
ACGCACCGTCCCCGTTCGCG+AGG	0.609985	2.3:+69332755	MS.gene54299:CDS
TCGTGGTGAAAATCCGGCAT+CGG	0.613818	2.3:-69332714	None:intergenic
ACAGAAACTGAGGCAGATGG+TGG	0.614677	2.3:+69333511	MS.gene54299:CDS
AATTTCCGATGAGGAATCAA+CGG	0.616061	2.3:-69333137	None:intergenic
GTTATCAATTTCTTCACCGG+TGG	0.628483	2.3:+69333085	MS.gene54299:CDS
GAGTGGAAGAACAGAAACTG+AGG	0.631673	2.3:+69333501	MS.gene54299:CDS
AGAACAGAAACTGAGGCAGA+TGG	0.635950	2.3:+69333508	MS.gene54299:CDS
TCCACTCTCGTCGATGCATG+GGG	0.638750	2.3:+69332801	MS.gene54299:CDS
ATCAACGGAAGAGCCACCGG+CGG	0.641820	2.3:-69333122	None:intergenic
GAATTAGCAAATTTCCGATG+AGG	0.643473	2.3:-69333146	None:intergenic
TTAAGCGTGGAAAACCATCT+GGG	0.647441	2.3:+69333624	MS.gene54299:CDS
ACCAACAATCCTCGCGAACG+GGG	0.660501	2.3:-69332764	None:intergenic
CTTTCTGACGAAGATTACCA+CGG	0.666897	2.3:-69332845	None:intergenic
CGGTATCTTGAACTCAACCG+TGG	0.727584	2.3:+69332828	MS.gene54299:CDS
CAGCTGGAGAGAATTAAGCG+TGG	0.736726	2.3:+69333611	MS.gene54299:CDS
ACGGTGGTGTGAAAGAATCG+TGG	0.749435	2.3:-69332731	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TACGATTAAGAAAAAGTATA+AGG	+	chr2.3:69332959-69332978	MS.gene54299:CDS	20.0%
!!!	TTTGTTTTTTAATGAACGAA+TGG	+	chr2.3:69333762-69333781	MS.gene54299:intron	20.0%
!	TATCAAATCACAAGCTAAAA+GGG	-	chr2.3:69333706-69333725	None:intergenic	25.0%
!	TTATACTGTTATGCATGATA+GGG	+	chr2.3:69333787-69333806	MS.gene54299:intron	25.0%
!	TTATCAAATCACAAGCTAAA+AGG	-	chr2.3:69333707-69333726	None:intergenic	25.0%
!!!	ATGGTGTTTTGAATTCTAAT+TGG	+	chr2.3:69333009-69333028	MS.gene54299:CDS	25.0%
	AAAACAAAAACTGAGCAATG+CGG	-	chr2.3:69333744-69333763	None:intergenic	30.0%
	ACATCTAACCGTTCAAAAAA+AGG	-	chr2.3:69333035-69333054	None:intergenic	30.0%
	AGTATAAGGTTGAAAAAGCT+AGG	+	chr2.3:69332973-69332992	MS.gene54299:CDS	30.0%
	ATCAAATCACAAGCTAAAAG+GGG	-	chr2.3:69333705-69333724	None:intergenic	30.0%
	GAAGTTATCAATTTCTTCAC+CGG	+	chr2.3:69333082-69333101	MS.gene54299:CDS	30.0%
	GTATAAGGTTGAAAAAGCTA+GGG	+	chr2.3:69332974-69332993	MS.gene54299:CDS	30.0%
	GTTATACTGTTATGCATGAT+AGG	+	chr2.3:69333786-69333805	MS.gene54299:intron	30.0%
!	AACTTCTTAGCACTGAAATT+AGG	-	chr2.3:69333068-69333087	None:intergenic	30.0%
!!	TTTTAGGAGGAATTATTCTG+CGG	+	chr2.3:69333283-69333302	MS.gene54299:intron	30.0%
!!!	CTAATTGGCCTTTTTTTGAA+CGG	+	chr2.3:69333024-69333043	MS.gene54299:CDS	30.0%
!!!	TTATGGATGATGGGTATTTT+AGG	+	chr2.3:69333267-69333286	MS.gene54299:intron	30.0%
	AAAGAATCGTGGTGAAAATC+CGG	-	chr2.3:69332723-69332742	None:intergenic	35.0%
	AATTTCCGATGAGGAATCAA+CGG	-	chr2.3:69333140-69333159	None:intergenic	35.0%
	GAATTAGCAAATTTCCGATG+AGG	-	chr2.3:69333149-69333168	None:intergenic	35.0%
	GTAATCTTCGTCAGAAAGAT+TGG	+	chr2.3:69332850-69332869	MS.gene54299:CDS	35.0%
	TTATTCATCACCTGCAATTG+CGG	+	chr2.3:69333175-69333194	MS.gene54299:CDS	35.0%
!!	CATCGGAAATTTGCTAATTC+TGG	+	chr2.3:69333149-69333168	MS.gene54299:CDS	35.0%
!!!	GAACGGTTAGATGTTTTGAT+TGG	+	chr2.3:69333041-69333060	MS.gene54299:CDS	35.0%
	AAGTGGATGAAGGGGATAAA+GGG	+	chr2.3:69333420-69333439	MS.gene54299:intron	40.0%
	ATTAAGCGTGGAAAACCATC+TGG	+	chr2.3:69333623-69333642	MS.gene54299:CDS	40.0%
	CTAAAGATCTTGAAGTGCAG+AGG	+	chr2.3:69333561-69333580	MS.gene54299:CDS	40.0%
	CTTTCTGACGAAGATTACCA+CGG	-	chr2.3:69332848-69332867	None:intergenic	40.0%
	GAAGAGGAATTATTCTGCTG+CGG	+	chr2.3:69333226-69333245	MS.gene54299:intron	40.0%
	GCAGAATAATTCCTCTTCTG+CGG	-	chr2.3:69333224-69333243	None:intergenic	40.0%
	GGTTGAAAAAGCTAGGGTTA+CGG	+	chr2.3:69332980-69332999	MS.gene54299:CDS	40.0%
	GTTATCAATTTCTTCACCGG+TGG	+	chr2.3:69333085-69333104	MS.gene54299:CDS	40.0%
	TATGGATACTCAAGTTCAGC+TGG	+	chr2.3:69333595-69333614	MS.gene54299:CDS	40.0%
	TGGTGAAATGTATGAGAGAG+TGG	+	chr2.3:69333484-69333503	MS.gene54299:CDS	40.0%
	TTAAGCGTGGAAAACCATCT+GGG	+	chr2.3:69333624-69333643	MS.gene54299:CDS	40.0%
!	ATCTGTGCGATGAGTTTTCT+TGG	-	chr2.3:69332916-69332935	None:intergenic	40.0%
!	GTTATGCATGATAGGGCTTT+TGG	+	chr2.3:69333794-69333813	MS.gene54299:intron	40.0%
!!	CGGAAATTTGCTAATTCTGG+TGG	+	chr2.3:69333152-69333171	MS.gene54299:CDS	40.0%
!!	TGGTGGATTTGGAGAAACAA+AGG	+	chr2.3:69333528-69333547	MS.gene54299:CDS	40.0%
!!!	TGGATGATGGGTATTTTAGG+AGG	+	chr2.3:69333270-69333289	MS.gene54299:intron	40.0%
	AAGGGGATAAAGGGAGAGAA+GGG	+	chr2.3:69333429-69333448	MS.gene54299:intron	45.0%
	AGAACAGAAACTGAGGCAGA+TGG	+	chr2.3:69333508-69333527	MS.gene54299:CDS	45.0%
	ATCAATTTCTTCACCGGTGG+CGG	+	chr2.3:69333088-69333107	MS.gene54299:CDS	45.0%
	ATCTCACCATTAGACCCAGA+TGG	-	chr2.3:69333641-69333660	None:intergenic	45.0%
	GAAGTGGATGAAGGGGATAA+AGG	+	chr2.3:69333419-69333438	MS.gene54299:intron	45.0%
	GAGTGGAAGAACAGAAACTG+AGG	+	chr2.3:69333501-69333520	MS.gene54299:CDS	45.0%
	GATGCTGTTAACGCTCTTCA+TGG	+	chr2.3:69332885-69332904	MS.gene54299:CDS	45.0%
	GCAGAGGATGCAGATGTTTA+TGG	+	chr2.3:69333577-69333596	MS.gene54299:CDS	45.0%
	GCTAGGGTTACGGAATCTAA+TGG	+	chr2.3:69332990-69333009	MS.gene54299:CDS	45.0%
	GGAAAACCATCTGGGTCTAA+TGG	+	chr2.3:69333632-69333651	MS.gene54299:CDS	45.0%
	TGGAAGTAGAGGAAGAGGAA+GGG	+	chr2.3:69333387-69333406	MS.gene54299:intron	45.0%
!	AGCTGATGAGGATGATGATG+AGG	+	chr2.3:69333331-69333350	MS.gene54299:intron	45.0%
!	GGATGATGATGAGGATGATG+AGG	+	chr2.3:69333340-69333359	MS.gene54299:intron	45.0%
!	TGATGATGAGGATGATGAGG+TGG	+	chr2.3:69333343-69333362	MS.gene54299:intron	45.0%
!!	CTCTTCCGTTGATTCCTCAT+CGG	+	chr2.3:69333132-69333151	MS.gene54299:CDS	45.0%
	AAGGGAGAGAAGGGATGAAG+AGG	+	chr2.3:69333438-69333457	MS.gene54299:intron	50.0%
	AAGTAGAGGAAGAGGAAGGG+AGG	+	chr2.3:69333390-69333409	MS.gene54299:intron	50.0%
	ACAGAAACTGAGGCAGATGG+TGG	+	chr2.3:69333511-69333530	MS.gene54299:CDS	50.0%
	ACGGCTACGGTTATGGATGA+TGG	+	chr2.3:69333257-69333276	MS.gene54299:intron	50.0%
	ACGGTGGTGTGAAAGAATCG+TGG	-	chr2.3:69332734-69332753	None:intergenic	50.0%
	AGAGGTGGAAGTAGAGGAAG+AGG	+	chr2.3:69333382-69333401	MS.gene54299:intron	50.0%
	AGTAGAGGAAGAGGAAGGGA+GGG	+	chr2.3:69333391-69333410	MS.gene54299:intron	50.0%
	CAGCTGGAGAGAATTAAGCG+TGG	+	chr2.3:69333611-69333630	MS.gene54299:CDS	50.0%
	CGGCTACGGTTATGGATGAT+GGG	+	chr2.3:69333258-69333277	MS.gene54299:intron	50.0%
	CGGTATCTTGAACTCAACCG+TGG	+	chr2.3:69332828-69332847	MS.gene54299:CDS	50.0%
	GAAGGGGATAAAGGGAGAGA+AGG	+	chr2.3:69333428-69333447	MS.gene54299:intron	50.0%
	GAATTATTCTGCTGCGGCTG+CGG	+	chr2.3:69333232-69333251	MS.gene54299:intron	50.0%
	GAGAGAAGGGATGAAGAGGT+TGG	+	chr2.3:69333442-69333461	MS.gene54299:intron	50.0%
	GTCGAATGTACCGCAATTGC+AGG	-	chr2.3:69333188-69333207	None:intergenic	50.0%
	GTGGAAGTAGAGGAAGAGGA+AGG	+	chr2.3:69333386-69333405	MS.gene54299:intron	50.0%
	TGACCAACAATCCTCGCGAA+CGG	-	chr2.3:69332769-69332788	None:intergenic	50.0%
	TGATGAGGATGATGAGGTGG+AGG	+	chr2.3:69333346-69333365	MS.gene54299:intron	50.0%
	TGATGAGGTGGAGGAAGTTG+AGG	+	chr2.3:69333355-69333374	MS.gene54299:intron	50.0%
	TTCCACTCTCGTCGATGCAT+GGG	+	chr2.3:69332800-69332819	MS.gene54299:CDS	50.0%
!	CTTTTGGACCTGAGGACAGT+GGG	+	chr2.3:69333810-69333829	MS.gene54299:CDS	50.0%
!	GCGAAGGCGATAGAGAGTTT+TGG	+	chr2.3:69333464-69333483	MS.gene54299:intron	50.0%
!	TGATAGGGCTTTTGGACCTG+AGG	+	chr2.3:69333802-69333821	MS.gene54299:intron	50.0%
!!	ACTGAGGCAGATGGTGGATT+TGG	+	chr2.3:69333517-69333536	MS.gene54299:CDS	50.0%
	ACCAACAATCCTCGCGAACG+GGG	-	chr2.3:69332767-69332786	None:intergenic	55.0%
	AGGGATGAAGAGGTTGGCGA+AGG	+	chr2.3:69333448-69333467	MS.gene54299:intron	55.0%
	AGGGGGAGTGAAGTGGATGA+AGG	+	chr2.3:69333410-69333429	MS.gene54299:intron	55.0%
	CTGAGGACAGTGGGTCTCAA+GGG	+	chr2.3:69333819-69333838	MS.gene54299:CDS	55.0%
	CTTCCACTCTCGTCGATGCA+TGG	+	chr2.3:69332799-69332818	MS.gene54299:CDS	55.0%
	GACCAACAATCCTCGCGAAC+GGG	-	chr2.3:69332768-69332787	None:intergenic	55.0%
	GGAAGTTGAGGAGGAAGAGG+TGG	+	chr2.3:69333367-69333386	MS.gene54299:intron	55.0%
	GGAATCAACGGAAGAGCCAC+CGG	-	chr2.3:69333128-69333147	None:intergenic	55.0%
	GGAGGAAGAGGTGGAAGTAG+AGG	+	chr2.3:69333376-69333395	MS.gene54299:intron	55.0%
	GGAGGAAGTTGAGGAGGAAG+AGG	+	chr2.3:69333364-69333383	MS.gene54299:intron	55.0%
	GGGGAGTGAAGTGGATGAAG+GGG	+	chr2.3:69333412-69333431	MS.gene54299:intron	55.0%
	GGGGGAGTGAAGTGGATGAA+GGG	+	chr2.3:69333411-69333430	MS.gene54299:intron	55.0%
	GTAGAGGAAGAGGAAGGGAG+GGG	+	chr2.3:69333392-69333411	MS.gene54299:intron	55.0%
	TAGAGGAAGAGGAAGGGAGG+GGG	+	chr2.3:69333393-69333412	MS.gene54299:intron	55.0%
	TCCACTCTCGTCGATGCATG+GGG	+	chr2.3:69332801-69332820	MS.gene54299:CDS	55.0%
	TGAGGTGGAGGAAGTTGAGG+AGG	+	chr2.3:69333358-69333377	MS.gene54299:intron	55.0%
!	GCTTTTGGACCTGAGGACAG+TGG	+	chr2.3:69333809-69333828	MS.gene54299:CDS	55.0%
	ACAATCCTCGCGAACGGGGA+CGG	-	chr2.3:69332763-69332782	None:intergenic	60.0%
	ATCAACGGAAGAGCCACCGG+CGG	-	chr2.3:69333125-69333144	None:intergenic	60.0%
	ATCAGCTTCCGCAGCAGCAG+CGG	-	chr2.3:69333318-69333337	None:intergenic	60.0%
	CAGTGGCGTTACCGCAGAAG+AGG	+	chr2.3:69333210-69333229	MS.gene54299:intron	60.0%
	CCTGAGGACAGTGGGTCTCA+AGG	+	chr2.3:69333818-69333837	MS.gene54299:CDS	60.0%
	CCTTGAGACCCACTGTCCTC+AGG	-	chr2.3:69333821-69333840	None:intergenic	60.0%
	CTTCTGCGGTAACGCCACTG+CGG	-	chr2.3:69333210-69333229	None:intergenic	60.0%
	TCCCCGTTCGCGAGGATTGT+TGG	+	chr2.3:69332763-69332782	MS.gene54299:CDS	60.0%
	TCGTCGATGCATGGGGTCGT+CGG	+	chr2.3:69332808-69332827	MS.gene54299:CDS	60.0%
	TGCGGCTACGGCTACGGTTA+TGG	+	chr2.3:69333250-69333269	MS.gene54299:intron	60.0%
	TGCGGTACATTCGACCGCAG+TGG	+	chr2.3:69333193-69333212	MS.gene54299:intron	60.0%
	TGCTGCTGCGGAAGCTGATG+AGG	+	chr2.3:69333319-69333338	MS.gene54299:intron	60.0%
!	ACCCCATGCATCGACGAGAG+TGG	-	chr2.3:69332805-69332824	None:intergenic	60.0%
	GGAAGGGAGGGGGAGTGAAG+TGG	+	chr2.3:69333403-69333422	MS.gene54299:intron	65.0%
	TTCTGCTGCGGCTGCGGCTA+CGG	+	chr2.3:69333238-69333257	MS.gene54299:intron	65.0%
	AGCTGCAGCCGCTGCTGCTG+CGG	+	chr2.3:69333307-69333326	MS.gene54299:intron	70.0%
	CGAACGGGGACGGTGCGTGA+CGG	-	chr2.3:69332753-69332772	None:intergenic	70.0%
	TGCGGCTGCGGCTACGGCTA+CGG	+	chr2.3:69333244-69333263	MS.gene54299:intron	70.0%
	ACGCACCGTCCCCGTTCGCG+AGG	+	chr2.3:69332755-69332774	MS.gene54299:CDS	75.0%
	ACGGGGACGGTGCGTGACGG+TGG	-	chr2.3:69332750-69332769	None:intergenic	75.0%
	GGAAGAGCCACCGGCGGCGA+CGG	-	chr2.3:69333119-69333138	None:intergenic	75.0%
!!	GGCGACGGTGTCACCGCCAC+CGG	-	chr2.3:69333104-69333123	None:intergenic	75.0%
!	GGCGGTGACACCGTCGCCGC+CGG	+	chr2.3:69333106-69333125	MS.gene54299:CDS	80.0%
!	GGTGACACCGTCGCCGCCGG+TGG	+	chr2.3:69333109-69333128	MS.gene54299:CDS	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	69332717	69333854	69332717	ID=MS.gene54299
chr2.3	mRNA	69332717	69333854	69332717	ID=MS.gene54299.t1;Parent=MS.gene54299
chr2.3	exon	69332717	69333196	69332717	ID=MS.gene54299.t1.exon1;Parent=MS.gene54299.t1
chr2.3	CDS	69332717	69333196	69332717	ID=cds.MS.gene54299.t1;Parent=MS.gene54299.t1
chr2.3	exon	69333470	69333653	69333470	ID=MS.gene54299.t1.exon2;Parent=MS.gene54299.t1
chr2.3	CDS	69333470	69333653	69333470	ID=cds.MS.gene54299.t1;Parent=MS.gene54299.t1
chr2.3	exon	69333808	69333854	69333808	ID=MS.gene54299.t1.exon3;Parent=MS.gene54299.t1
chr2.3	CDS	69333808	69333854	69333808	ID=cds.MS.gene54299.t1;Parent=MS.gene54299.t1

Gene Sequence

>MS.gene54299

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCGCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCGACCGCAGTGGCGTTACCGCAGAAGAGGAATTATTCTGCTGCGGCTGCGGCTACGGCTACGGTTATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAAAGTAAAGTAATTTAAGCTTTTTAATTGTTTTTTGTTTCCCCTTTTAGCTTGTGATTTGATAATTTAATAACATAGACCGCATTGCTCAGTTTTTGTTTTTGTTTTTTAATGAACGAATGGTGTTATACTGTTATGCATGATAGGGCTTTTGGACCTGAGGACAGTGGGTCTCAAGGGTATGCTTCAATAA

Protein sequence

>MS.gene54299.t1

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGLLDLRTVGLKGMLQ