Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54331.t1 | XP_003620976.1 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 5.80E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54331.t1 | Q39236 | 91.3 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.7e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54331.t1 | B7FH46 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 4.2e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene54331 | 0.8354 | 1.72E-56 | -1.69E-46 |
| MS.gene049863 | MS.gene54331 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene54331 | 0.801986 | 6.95E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene54331 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene54331 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene54331 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene54331 | -0.802284 | 6.03E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene54331 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene54331 | -0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene053045 | MS.gene54331 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene54331 | 0.818639 | 1.76E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene54331 | 0.83321 | 6.08E-56 | -1.69E-46 |
| MS.gene053995 | MS.gene54331 | 0.835462 | 1.65E-56 | -1.69E-46 |
| MS.gene054222 | MS.gene54331 | 0.827509 | 1.50E-54 | -1.69E-46 |
| MS.gene055603 | MS.gene54331 | 0.800365 | 1.49E-48 | -1.69E-46 |
| MS.gene056091 | MS.gene54331 | 0.833926 | 4.03E-56 | -1.69E-46 |
| MS.gene05636 | MS.gene54331 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene056638 | MS.gene54331 | 0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene54331 | 0.818783 | 1.64E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene54331 | 0.819179 | 1.33E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene54331 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene54331 | 0.827687 | 1.36E-54 | -1.69E-46 |
| MS.gene058635 | MS.gene54331 | 0.812004 | 5.27E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene54331 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene060840 | MS.gene54331 | 0.805909 | 1.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052074 | MS.gene54331 | PPI |
| MS.gene76728 | MS.gene54331 | PPI |
| MS.gene54331 | MS.gene45536 | PPI |
| MS.gene31113 | MS.gene54331 | PPI |
| MS.gene77045 | MS.gene54331 | PPI |
| MS.gene54331 | MS.gene82237 | PPI |
| MS.gene78402 | MS.gene54331 | PPI |
| MS.gene42075 | MS.gene54331 | PPI |
| MS.gene87743 | MS.gene54331 | PPI |
| MS.gene87064 | MS.gene54331 | PPI |
| MS.gene48819 | MS.gene54331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54331.t1 | MTR_7g005540 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.48e-75 | 219 |
| MS.gene54331.t1 | MTR_5g066740 | 87.500 | 104 | 13 | 0 | 1 | 104 | 7 | 110 | 4.16e-66 | 196 |
| MS.gene54331.t1 | MTR_7g005540 | 100.000 | 60 | 0 | 0 | 1 | 60 | 1 | 60 | 2.72e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54331.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
| MS.gene54331.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
Find 23 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCCTGAGATTGCGATTC+AGG | 0.222867 | 7.2:-93501854 | MS.gene54331:CDS |
| AATGTGCCTCACTGAGACTT+TGG | 0.433161 | 7.2:-93501902 | MS.gene54331:CDS |
| ATTGTGATTAGACAATTATC+TGG | 0.433788 | 7.2:+93498388 | None:intergenic |
| GTAGTCTATGACTGAAGCTC+TGG | 0.460011 | 7.2:-93501715 | MS.gene54331:intron |
| TTAGGGCAGCCTTGTGTGCA+AGG | 0.462107 | 7.2:+93498431 | None:intergenic |
| ATTGAAAGAGAAGATACAAA+AGG | 0.468041 | 7.2:-93498473 | MS.gene54331:CDS |
| GGTTCTCGTTCAGTTTGATA+AGG | 0.472558 | 7.2:-93501833 | MS.gene54331:intron |
| CAAAGCATCTTGTAAGATGA+AGG | 0.489651 | 7.2:+93499013 | None:intergenic |
| TAACCCGTCCAACATTCTCT+TGG | 0.494051 | 7.2:+93498973 | None:intergenic |
| CACTGAGACTTTGGACGAGA+TGG | 0.495885 | 7.2:-93501893 | MS.gene54331:CDS |
| AGAACCTGAATCGCAATCTC+AGG | 0.497392 | 7.2:+93501850 | None:intergenic |
| TAAAAGCAAGGTCTCTATCA+AGG | 0.505886 | 7.2:-93501682 | MS.gene54331:intron |
| AGATGATAGCCTTGCACACA+AGG | 0.527665 | 7.2:-93498440 | MS.gene54331:CDS |
| TGTTGGACGGGTTAAAATAG+TGG | 0.534469 | 7.2:-93498964 | MS.gene54331:CDS |
| AGACAATTATCTGGCGTGAA+AGG | 0.536018 | 7.2:+93498397 | None:intergenic |
| CTTTATCGTAGGTCGACAAT+CGG | 0.550857 | 7.2:-93501925 | MS.gene54331:CDS |
| GAAGACAACCAAGAGAATGT+TGG | 0.561206 | 7.2:-93498981 | MS.gene54331:CDS |
| TTGGACGAGATGGTTCAGAA+TGG | 0.589806 | 7.2:-93501883 | MS.gene54331:CDS |
| CAACCAAGAGAATGTTGGAC+GGG | 0.592439 | 7.2:-93498976 | MS.gene54331:CDS |
| GGAAACACAAGTTAAAAGCA+AGG | 0.611187 | 7.2:-93501694 | MS.gene54331:CDS |
| ACAACCAAGAGAATGTTGGA+CGG | 0.645466 | 7.2:-93498977 | MS.gene54331:CDS |
| CGACGTTCGAACTTTATCGT+AGG | 0.648273 | 7.2:-93501936 | MS.gene54331:CDS |
| TCTCGTCCAAAGTCTCAGTG+AGG | 0.751939 | 7.2:+93501896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGAATAAATTCTT+TGG | - | chr7.2:93499804-93499823 | MS.gene54331:intron | 10.0% |
| !! | ATTTATTGAATAAATTCTTT+GGG | - | chr7.2:93499805-93499824 | MS.gene54331:intron | 10.0% |
| !! | TATGTTATTATAGATTTAAA+AGG | - | chr7.2:93501532-93501551 | MS.gene54331:intron | 10.0% |
| !! | TTTATTGAATAAATTCTTTG+GGG | - | chr7.2:93499806-93499825 | MS.gene54331:intron | 15.0% |
| !! | TTTGATGTGTAATTAAAATT+TGG | + | chr7.2:93499328-93499347 | None:intergenic | 15.0% |
| !!! | AAACAAATTTATTTTTCTCT+GGG | - | chr7.2:93501709-93501728 | MS.gene54331:CDS | 15.0% |
| !!! | AAACATAAAAAGATGTTTTA+AGG | + | chr7.2:93501118-93501137 | None:intergenic | 15.0% |
| !!! | TAAACAAATTTATTTTTCTC+TGG | - | chr7.2:93501708-93501727 | MS.gene54331:CDS | 15.0% |
| !!! | TACCTTTTTACTTAATTTTT+TGG | - | chr7.2:93500415-93500434 | MS.gene54331:intron | 15.0% |
| !!! | TGCAGTTTTTTTTTTTTTTT+TGG | + | chr7.2:93501659-93501678 | None:intergenic | 15.0% |
| !! | AATAATAACATGAAGATTGA+AGG | + | chr7.2:93501558-93501577 | None:intergenic | 20.0% |
| !! | AGCCAAAAAATTAAGTAAAA+AGG | + | chr7.2:93500420-93500439 | None:intergenic | 20.0% |
| !! | ATAATGATGAGTAAAAAGTA+TGG | + | chr7.2:93500509-93500528 | None:intergenic | 20.0% |
| !! | ATTAAGTAAAAAGGTAATTG+TGG | + | chr7.2:93500411-93500430 | None:intergenic | 20.0% |
| !! | TAAAATTCTTCTACGTAATA+GGG | - | chr7.2:93500777-93500796 | MS.gene54331:intron | 20.0% |
| !! | TAGTACAAAATGTTGTTAAA+TGG | + | chr7.2:93500823-93500842 | None:intergenic | 20.0% |
| !! | TATTTGCATTATCTTCTATT+TGG | - | chr7.2:93500238-93500257 | MS.gene54331:intron | 20.0% |
| !! | TTAAAATTCTTCTACGTAAT+AGG | - | chr7.2:93500776-93500795 | MS.gene54331:intron | 20.0% |
| !! | TTAAGTAAAAAGGTAATTGT+GGG | + | chr7.2:93500410-93500429 | None:intergenic | 20.0% |
| !! | TTACATTTAGAAATTCCTTA+TGG | - | chr7.2:93500176-93500195 | MS.gene54331:intron | 20.0% |
| !!! | ATCATTCAAGGTTTAATTTT+TGG | - | chr7.2:93500272-93500291 | MS.gene54331:intron | 20.0% |
| !!! | CTTATTATTTTAATTGCATG+TGG | - | chr7.2:93498581-93498600 | MS.gene54331:intron | 20.0% |
| !!! | TAAAATTTGGTTTAAGACAT+TGG | + | chr7.2:93499315-93499334 | None:intergenic | 20.0% |
| !!! | TTTTTACCTTTCAATTCAAT+GGG | - | chr7.2:93499190-93499209 | MS.gene54331:intron | 20.0% |
| ! | ATAACAGTCATATATGTCAA+TGG | + | chr7.2:93500537-93500556 | None:intergenic | 25.0% |
| ! | ATGACATGTTTCAGTATAAA+GGG | + | chr7.2:93499493-93499512 | None:intergenic | 25.0% |
| ! | ATTCAGTTACAAATCCTATT+TGG | + | chr7.2:93499777-93499796 | None:intergenic | 25.0% |
| ! | ATTGAAAGAGAAGATACAAA+AGG | - | chr7.2:93501851-93501870 | MS.gene54331:CDS | 25.0% |
| ! | ATTGTGATTAGACAATTATC+TGG | + | chr7.2:93501939-93501958 | None:intergenic | 25.0% |
| ! | CTATAATTCACCATCAAATT+TGG | + | chr7.2:93499732-93499751 | None:intergenic | 25.0% |
| ! | GAAACTAAGTAAACTATTGT+TGG | - | chr7.2:93500624-93500643 | MS.gene54331:intron | 25.0% |
| ! | GAGATTTAAAGAGATTGAAT+TGG | - | chr7.2:93500373-93500392 | MS.gene54331:intron | 25.0% |
| ! | GTTTGTACTAGGAATAAATA+TGG | + | chr7.2:93500001-93500020 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTTAAATGG+AGG | + | chr7.2:93500820-93500839 | None:intergenic | 25.0% |
| ! | TAGAATTGTCTGATAAAAAC+TGG | - | chr7.2:93499749-93499768 | MS.gene54331:intron | 25.0% |
| ! | TAGTCATCGTTATAAATGTA+TGG | - | chr7.2:93501754-93501773 | MS.gene54331:intron | 25.0% |
| ! | TCATAAAGAAATACTATGCA+AGG | + | chr7.2:93500131-93500150 | None:intergenic | 25.0% |
| ! | TCGTTATAAATGTATGGTTA+TGG | - | chr7.2:93501760-93501779 | MS.gene54331:intron | 25.0% |
| ! | TGTTGAAAAACCAAATTTGA+TGG | - | chr7.2:93499719-93499738 | MS.gene54331:intron | 25.0% |
| ! | TTAAAGAGATTGAATTGGTA+TGG | - | chr7.2:93500378-93500397 | MS.gene54331:intron | 25.0% |
| ! | TTACATTGAGAATATCACTT+GGG | - | chr7.2:93501590-93501609 | MS.gene54331:intron | 25.0% |
| !! | ACATCAAATAACAATTTTCC+GGG | - | chr7.2:93499340-93499359 | MS.gene54331:intron | 25.0% |
| !! | ATAGAAGATTAATTTGACTG+TGG | - | chr7.2:93501034-93501053 | MS.gene54331:intron | 25.0% |
| !! | ATCTTTTGTTAGATAGTGTA+AGG | - | chr7.2:93498676-93498695 | MS.gene54331:intron | 25.0% |
| !! | CACATCAAATAACAATTTTC+CGG | - | chr7.2:93499339-93499358 | MS.gene54331:intron | 25.0% |
| !! | CTTTTTACCTTTCAATTCAA+TGG | - | chr7.2:93499189-93499208 | MS.gene54331:intron | 25.0% |
| !! | TAGAAGATTAATTTGACTGT+GGG | - | chr7.2:93501035-93501054 | MS.gene54331:intron | 25.0% |
| !! | TCTCATAGTTTGGAATAAAT+CGG | + | chr7.2:93499224-93499243 | None:intergenic | 25.0% |
| !! | TTCATCTCATTAGTTTGAAT+TGG | + | chr7.2:93498912-93498931 | None:intergenic | 25.0% |
| !!! | AAAAAGATGTTTTAAGGTGT+TGG | + | chr7.2:93501112-93501131 | None:intergenic | 25.0% |
| !!! | AAAAGATGTTTTAAGGTGTT+GGG | + | chr7.2:93501111-93501130 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAGATTCTTAAAC+CGG | + | chr7.2:93499444-93499463 | None:intergenic | 25.0% |
| AACACTCAAGAGTAAAGAAA+AGG | + | chr7.2:93501224-93501243 | None:intergenic | 30.0% | |
| AATGAGATGAAGTTTACCTA+GGG | - | chr7.2:93498921-93498940 | MS.gene54331:intron | 30.0% | |
| ACACAGAACTAAAATTACAC+AGG | - | chr7.2:93499865-93499884 | MS.gene54331:intron | 30.0% | |
| ACTATAGCACTATAATGTAG+CGG | + | chr7.2:93500884-93500903 | None:intergenic | 30.0% | |
| ATACAACTGTTAACACACAA+AGG | + | chr7.2:93499566-93499585 | None:intergenic | 30.0% | |
| ATTGTTAAGATTGTCTAGCA+GGG | - | chr7.2:93498730-93498749 | MS.gene54331:intron | 30.0% | |
| ATTTAGAAATTCCTTATGGC+GGG | - | chr7.2:93500180-93500199 | MS.gene54331:intron | 30.0% | |
| ATTTGTTTACATAGAGCTCA+TGG | + | chr7.2:93501697-93501716 | None:intergenic | 30.0% | |
| CATTGAGCAACAAATATACA+AGG | + | chr7.2:93498802-93498821 | None:intergenic | 30.0% | |
| CATTTAGAAATTCCTTATGG+CGG | - | chr7.2:93500179-93500198 | MS.gene54331:intron | 30.0% | |
| CCAACTTTACAAATCTCTAA+AGG | + | chr7.2:93499526-93499545 | None:intergenic | 30.0% | |
| GAAAGTTTGTGAATGAGTTT+CGG | + | chr7.2:93499404-93499423 | None:intergenic | 30.0% | |
| GATAAAAACTGGTACCAAAT+AGG | - | chr7.2:93499760-93499779 | MS.gene54331:intron | 30.0% | |
| GATGACATGTTTCAGTATAA+AGG | + | chr7.2:93499494-93499513 | None:intergenic | 30.0% | |
| GATTGAGCCAAAAATATACA+AGG | + | chr7.2:93498834-93498853 | None:intergenic | 30.0% | |
| GCATAGTATTTCTTTATGAG+AGG | - | chr7.2:93500132-93500151 | MS.gene54331:intron | 30.0% | |
| GGAAGTCATGACAAAAAAAA+TGG | + | chr7.2:93500488-93500507 | None:intergenic | 30.0% | |
| GGTTTAAGAATCTCTTGAAA+AGG | - | chr7.2:93499443-93499462 | MS.gene54331:intron | 30.0% | |
| GTTACATTGAGAATATCACT+TGG | - | chr7.2:93501589-93501608 | MS.gene54331:intron | 30.0% | |
| GTTATTGTAGAATTATTGCG+TGG | + | chr7.2:93499960-93499979 | None:intergenic | 30.0% | |
| TAAAATCAAAGTCGAGGATA+TGG | + | chr7.2:93499285-93499304 | None:intergenic | 30.0% | |
| TAAACTATTGTTGGATAGCA+AGG | - | chr7.2:93500633-93500652 | MS.gene54331:intron | 30.0% | |
| TAATAACATAGTGTAGATGC+TGG | + | chr7.2:93501522-93501541 | None:intergenic | 30.0% | |
| TAATGAGATGAAGTTTACCT+AGG | - | chr7.2:93498920-93498939 | MS.gene54331:intron | 30.0% | |
| TATTGTTAAGATTGTCTAGC+AGG | - | chr7.2:93498729-93498748 | MS.gene54331:intron | 30.0% | |
| TGGAAGAACATGAAAAAATG+AGG | + | chr7.2:93499373-93499392 | None:intergenic | 30.0% | |
| TGTGCAGTTAGTATCTATTA+TGG | + | chr7.2:93500065-93500084 | None:intergenic | 30.0% | |
| TTGTACTAAATAACGTATCG+TGG | - | chr7.2:93500835-93500854 | MS.gene54331:intron | 30.0% | |
| TTGTTAAATAGCAGCTATAG+TGG | + | chr7.2:93500908-93500927 | None:intergenic | 30.0% | |
| TTGTTAAATGGAGGATATAG+TGG | + | chr7.2:93500811-93500830 | None:intergenic | 30.0% | |
| TTTATTCCAAACTATGAGAG+AGG | - | chr7.2:93499225-93499244 | MS.gene54331:intron | 30.0% | |
| TTTCTATCGTATTGTCAACA+AGG | - | chr7.2:93501421-93501440 | MS.gene54331:intron | 30.0% | |
| ! | AAATCTCTAAAGGCTGAAAT+AGG | + | chr7.2:93499516-93499535 | None:intergenic | 30.0% |
| ! | ACACAAAGGTATATTGTAGA+GGG | + | chr7.2:93499552-93499571 | None:intergenic | 30.0% |
| ! | ACAGATTTTGTGACAATGTT+TGG | - | chr7.2:93501287-93501306 | MS.gene54331:intron | 30.0% |
| ! | AGAAAAACTGAAACTGACTT+TGG | + | chr7.2:93500107-93500126 | None:intergenic | 30.0% |
| ! | CCTTTAGAGATTTGTAAAGT+TGG | - | chr7.2:93499523-93499542 | MS.gene54331:intron | 30.0% |
| ! | GCATATTTTCTGTTTGTACT+AGG | + | chr7.2:93500012-93500031 | None:intergenic | 30.0% |
| ! | GTGTTCTTTATTTATCAGCA+TGG | + | chr7.2:93499604-93499623 | None:intergenic | 30.0% |
| !! | ATCTTTGTTCTAGAGTCATT+AGG | + | chr7.2:93501795-93501814 | None:intergenic | 30.0% |
| !! | GTATCAGTTTTTCAATCCAA+TGG | - | chr7.2:93499152-93499171 | MS.gene54331:intron | 30.0% |
| !! | TACTGAGCCTTGTATATTTT+TGG | - | chr7.2:93498824-93498843 | MS.gene54331:intron | 30.0% |
| !!! | AGTGTAAGGTGTTGATTTTT+TGG | - | chr7.2:93498690-93498709 | MS.gene54331:intron | 30.0% |
| !!! | ATTTTTTGGCTCTAAACATG+AGG | - | chr7.2:93500429-93500448 | MS.gene54331:intron | 30.0% |
| !!! | GTTTTTTCCATCTCTTTTTG+CGG | - | chr7.2:93500592-93500611 | MS.gene54331:intron | 30.0% |
| !!! | TTTTTTCCATCTCTTTTTGC+GGG | - | chr7.2:93500593-93500612 | MS.gene54331:intron | 30.0% |
| AAAAAATGAGGAAGAGAACC+CGG | + | chr7.2:93499361-93499380 | None:intergenic | 35.0% | |
| AACGTATCGTGGAACAATAA+CGG | - | chr7.2:93500846-93500865 | MS.gene54331:intron | 35.0% | |
| AAGAATCTCTTGAAAAGGTG+TGG | - | chr7.2:93499448-93499467 | MS.gene54331:intron | 35.0% | |
| ACAATTCAAGTCCACAAATC+AGG | - | chr7.2:93499622-93499641 | MS.gene54331:intron | 35.0% | |
| AGAATTATTGCGTGGTTAAC+TGG | + | chr7.2:93499952-93499971 | None:intergenic | 35.0% | |
| ATGAGATCGTATAGTGCAAA+AGG | + | chr7.2:93500572-93500591 | None:intergenic | 35.0% | |
| CAGTTTGATAAGGTAGGTTT+CGG | - | chr7.2:93498501-93498520 | MS.gene54331:intron | 35.0% | |
| CCACAAATCAGGATCAAATA+GGG | - | chr7.2:93499633-93499652 | MS.gene54331:intron | 35.0% | |
| GGAAACACAAGTTAAAAGCA+AGG | - | chr7.2:93498630-93498649 | MS.gene54331:intron | 35.0% | |
| GTCGCATTTCAGTTTAAGTA+TGG | - | chr7.2:93498943-93498962 | MS.gene54331:CDS | 35.0% | |
| TAAAAGCAAGGTCTCTATCA+AGG | - | chr7.2:93498642-93498661 | MS.gene54331:intron | 35.0% | |
| TAAACATGAGGTTCATTTGC+CGG | - | chr7.2:93500441-93500460 | MS.gene54331:intron | 35.0% | |
| TAAAGATGCCTAACTTGAGA+GGG | + | chr7.2:93500209-93500228 | None:intergenic | 35.0% | |
| TCCAAGTAAAATCAAAGTCG+AGG | + | chr7.2:93499291-93499310 | None:intergenic | 35.0% | |
| TCCACAAATCAGGATCAAAT+AGG | - | chr7.2:93499632-93499651 | MS.gene54331:intron | 35.0% | |
| TGTGTGTTAACAGTTGTATC+TGG | - | chr7.2:93499567-93499586 | MS.gene54331:intron | 35.0% | |
| TTAAAGATGCCTAACTTGAG+AGG | + | chr7.2:93500210-93500229 | None:intergenic | 35.0% | |
| TTACCTTTCAATTCAATGGG+TGG | - | chr7.2:93499193-93499212 | MS.gene54331:intron | 35.0% | |
| ! | ACTTTTACATGAACAAGCCA+TGG | + | chr7.2:93500693-93500712 | None:intergenic | 35.0% |
| ! | CAAAGCATCTTGTAAGATGA+AGG | + | chr7.2:93501314-93501333 | None:intergenic | 35.0% |
| ! | CACACAAAGGTATATTGTAG+AGG | + | chr7.2:93499553-93499572 | None:intergenic | 35.0% |
| ! | CTTTTCACTTTCCAATCACA+GGG | - | chr7.2:93501250-93501269 | MS.gene54331:intron | 35.0% |
| ! | GAAAGGAGAGTTCTCTTTTA+GGG | + | chr7.2:93501913-93501932 | None:intergenic | 35.0% |
| ! | TCTCATTAGTTTGAATTGGC+TGG | + | chr7.2:93498908-93498927 | None:intergenic | 35.0% |
| ! | TCTTTTCACTTTCCAATCAC+AGG | - | chr7.2:93501249-93501268 | MS.gene54331:intron | 35.0% |
| ! | TGAAAGGAGAGTTCTCTTTT+AGG | + | chr7.2:93501914-93501933 | None:intergenic | 35.0% |
| !! | TCCTCGACTTTGATTTTACT+TGG | - | chr7.2:93499287-93499306 | MS.gene54331:intron | 35.0% |
| !!! | AAGGTGTTGATTTTTTGGTG+AGG | - | chr7.2:93498695-93498714 | MS.gene54331:intron | 35.0% |
| AAACATGAGGTTCATTTGCC+GGG | - | chr7.2:93500442-93500461 | MS.gene54331:intron | 40.0% | |
| ACAACCAAGAGAATGTTGGA+CGG | - | chr7.2:93501347-93501366 | MS.gene54331:intron | 40.0% | |
| ACATCTCCTCTCTCATAGTT+TGG | + | chr7.2:93499234-93499253 | None:intergenic | 40.0% | |
| AGACAATTATCTGGCGTGAA+AGG | + | chr7.2:93501930-93501949 | None:intergenic | 40.0% | |
| AGTTTGTGAATGAGTTTCGG+AGG | + | chr7.2:93499401-93499420 | None:intergenic | 40.0% | |
| ATATGACCAAACTGCATACC+CGG | + | chr7.2:93500463-93500482 | None:intergenic | 40.0% | |
| ATTGCGTGGTTAACTGGAAT+AGG | + | chr7.2:93499946-93499965 | None:intergenic | 40.0% | |
| ATTGTGAACTGTCTCTGACT+TGG | + | chr7.2:93499840-93499859 | None:intergenic | 40.0% | |
| CAACCACCCATTGAATTGAA+AGG | + | chr7.2:93499199-93499218 | None:intergenic | 40.0% | |
| CTCGTTCAGTTTGATAAGGT+AGG | - | chr7.2:93498495-93498514 | MS.gene54331:intron | 40.0% | |
| CTTTATCGTAGGTCGACAAT+CGG | - | chr7.2:93498399-93498418 | MS.gene54331:CDS | 40.0% | |
| GAAGACAACCAAGAGAATGT+TGG | - | chr7.2:93501343-93501362 | MS.gene54331:intron | 40.0% | |
| GAGAAGAAACGCATCATTCA+AGG | - | chr7.2:93500260-93500279 | MS.gene54331:intron | 40.0% | |
| GAGACTACATGTTTCGTTTC+TGG | - | chr7.2:93498536-93498555 | MS.gene54331:intron | 40.0% | |
| GATAAGGTAGGTTTCGGAAT+TGG | - | chr7.2:93498507-93498526 | MS.gene54331:intron | 40.0% | |
| GGTTCTCGTTCAGTTTGATA+AGG | - | chr7.2:93498491-93498510 | MS.gene54331:intron | 40.0% | |
| TGAGAATATCACTTGGGAAC+TGG | - | chr7.2:93501596-93501615 | MS.gene54331:intron | 40.0% | |
| TTAAACTGAAATGCGACCCT+AGG | + | chr7.2:93498940-93498959 | None:intergenic | 40.0% | |
| TTAAGATTGTCTAGCAGGGA+TGG | - | chr7.2:93498734-93498753 | MS.gene54331:intron | 40.0% | |
| TTGTGAACTGTCTCTGACTT+GGG | + | chr7.2:93499839-93499858 | None:intergenic | 40.0% | |
| TTTCTCTGGGCAAACATCTA+TGG | - | chr7.2:93501722-93501741 | MS.gene54331:intron | 40.0% | |
| ! | ACATGTTTCGTTTCTGGATC+TGG | - | chr7.2:93498542-93498561 | MS.gene54331:intron | 40.0% |
| ! | CCCTATTTGATCCTGATTTG+TGG | + | chr7.2:93499636-93499655 | None:intergenic | 40.0% |
| ! | GGATTAGTGAAACACAGTCA+CGG | - | chr7.2:93499886-93499905 | MS.gene54331:intron | 40.0% |
| ! | TCTCATGATGATGACAACCA+TGG | - | chr7.2:93500673-93500692 | MS.gene54331:intron | 40.0% |
| !! | TGTTGGACGGGTTAAAATAG+TGG | - | chr7.2:93501360-93501379 | MS.gene54331:intron | 40.0% |
| !!! | TTTTTTGGTGAGGTGAAGCA+TGG | - | chr7.2:93498705-93498724 | MS.gene54331:intron | 40.0% |
| AATCAGAGAGACGAAGGGTT+TGG | - | chr7.2:93498850-93498869 | MS.gene54331:intron | 45.0% | |
| AATGAGTTTCGGAGGATGGA+TGG | + | chr7.2:93499393-93499412 | None:intergenic | 45.0% | |
| AATGTGCCTCACTGAGACTT+TGG | - | chr7.2:93498422-93498441 | MS.gene54331:CDS | 45.0% | |
| ACAAGGAGCTTATCATCTGC+TGG | - | chr7.2:93501438-93501457 | MS.gene54331:intron | 45.0% | |
| AGAACCTGAATCGCAATCTC+AGG | + | chr7.2:93498477-93498496 | None:intergenic | 45.0% | |
| AGCAAAAGTGACACAGCCAT+TGG | + | chr7.2:93499171-93499190 | None:intergenic | 45.0% | |
| AGCACGCCAACAACATGAAA+CGG | + | chr7.2:93501064-93501083 | None:intergenic | 45.0% | |
| ATGGTCTAACCACCAATCCA+TGG | + | chr7.2:93501466-93501485 | None:intergenic | 45.0% | |
| CAACCAAGAGAATGTTGGAC+GGG | - | chr7.2:93501348-93501367 | MS.gene54331:intron | 45.0% | |
| CGACGTTCGAACTTTATCGT+AGG | - | chr7.2:93498388-93498407 | MS.gene54331:CDS | 45.0% | |
| CTTATCATCTGCTGGTACCA+TGG | - | chr7.2:93501446-93501465 | MS.gene54331:intron | 45.0% | |
| GTAGTCTATGACTGAAGCTC+TGG | - | chr7.2:93498609-93498628 | MS.gene54331:intron | 45.0% | |
| TAACCCGTCCAACATTCTCT+TGG | + | chr7.2:93501354-93501373 | None:intergenic | 45.0% | |
| TAGTCCTGAGATTGCGATTC+AGG | - | chr7.2:93498470-93498489 | MS.gene54331:CDS | 45.0% | |
| TATGCAGATGTCCCTGTGAT+TGG | + | chr7.2:93501264-93501283 | None:intergenic | 45.0% | |
| TCTGATCACGCTCATTGTTC+CGG | - | chr7.2:93499422-93499441 | MS.gene54331:intron | 45.0% | |
| TGGTGGTTAGACCATAGTGA+CGG | - | chr7.2:93501471-93501490 | MS.gene54331:intron | 45.0% | |
| TGTGAATGAGTTTCGGAGGA+TGG | + | chr7.2:93499397-93499416 | None:intergenic | 45.0% | |
| TTGGACGAGATGGTTCAGAA+TGG | - | chr7.2:93498441-93498460 | MS.gene54331:CDS | 45.0% | |
| ! | AGATGATAGCCTTGCACACA+AGG | - | chr7.2:93501884-93501903 | MS.gene54331:CDS | 45.0% |
| ! | CTCTTGAAAAGGTGTGGCAT+TGG | - | chr7.2:93499454-93499473 | MS.gene54331:intron | 45.0% |
| ! | TAGGTTTCGGAATTGGTGCT+AGG | - | chr7.2:93498514-93498533 | MS.gene54331:intron | 45.0% |
| !! | AGAAAGCTCTAGAACCCTTG+TGG | + | chr7.2:93499915-93499934 | None:intergenic | 45.0% |
| !! | CAGACGTAACTTGTTACGAG+TGG | - | chr7.2:93499031-93499050 | MS.gene54331:CDS | 45.0% |
| !! | TTAGACCATAGTGACGGATG+TGG | - | chr7.2:93501477-93501496 | MS.gene54331:intron | 45.0% |
| ACACAGTCACGGTTTCCACA+AGG | - | chr7.2:93499897-93499916 | MS.gene54331:intron | 50.0% | |
| AGAGATACGCACACTGTGTG+TGG | - | chr7.2:93498989-93499008 | MS.gene54331:CDS | 50.0% | |
| ATGTGGCCTTCAGTTCTTGC+AGG | - | chr7.2:93501494-93501513 | MS.gene54331:intron | 50.0% | |
| CACAGTCACGGTTTCCACAA+GGG | - | chr7.2:93499898-93499917 | MS.gene54331:intron | 50.0% | |
| CACTGAGACTTTGGACGAGA+TGG | - | chr7.2:93498431-93498450 | MS.gene54331:CDS | 50.0% | |
| CATCTGCTGGTACCATGGAT+TGG | - | chr7.2:93501451-93501470 | MS.gene54331:intron | 50.0% | |
| CATTTGCCGGGTATGCAGTT+TGG | - | chr7.2:93500454-93500473 | MS.gene54331:intron | 50.0% | |
| CTGGTTCCTGCAAGAACTGA+AGG | + | chr7.2:93501503-93501522 | None:intergenic | 50.0% | |
| GGCTCAATCAGAGAGACGAA+GGG | - | chr7.2:93498845-93498864 | MS.gene54331:intron | 50.0% | |
| TCTCGTCCAAAGTCTCAGTG+AGG | + | chr7.2:93498431-93498450 | None:intergenic | 50.0% | |
| TGGCTCAATCAGAGAGACGA+AGG | - | chr7.2:93498844-93498863 | MS.gene54331:intron | 50.0% | |
| TGTGTGTGGACACTTGTGTG+AGG | - | chr7.2:93499003-93499022 | MS.gene54331:CDS | 50.0% | |
| ! | CCATCTCTTTTTGCGGGAGT+GGG | - | chr7.2:93500599-93500618 | MS.gene54331:intron | 50.0% |
| ! | TCCATCTCTTTTTGCGGGAG+TGG | - | chr7.2:93500598-93500617 | MS.gene54331:intron | 50.0% |
| AGAGAGACGAAGGGTTTGGC+TGG | - | chr7.2:93498854-93498873 | MS.gene54331:intron | 55.0% | |
| CCCACTCCCGCAAAAAGAGA+TGG | + | chr7.2:93500602-93500621 | None:intergenic | 55.0% | |
| GAAGGCCACATCCGTCACTA+TGG | + | chr7.2:93501485-93501504 | None:intergenic | 55.0% | |
| GCGGGATACCCTCTCAAGTT+AGG | - | chr7.2:93500198-93500217 | MS.gene54331:intron | 55.0% | |
| TTGGCGTGCTCAGTAGCTTG+TGG | - | chr7.2:93501074-93501093 | MS.gene54331:intron | 55.0% | |
| ! | GGGCTGCCGTTTCATGTTGT+TGG | - | chr7.2:93501055-93501074 | MS.gene54331:intron | 55.0% |
| ! | TGGCGTGCTCAGTAGCTTGT+GGG | - | chr7.2:93501075-93501094 | MS.gene54331:intron | 55.0% |
| ! | TTAGGGCAGCCTTGTGTGCA+AGG | + | chr7.2:93501896-93501915 | None:intergenic | 55.0% |
| !! | CTGCTGGTACCATGGATTGG+TGG | - | chr7.2:93501454-93501473 | MS.gene54331:intron | 55.0% |
| !! | TGAGAGGGTATCCCGCCATA+AGG | + | chr7.2:93500194-93500213 | None:intergenic | 55.0% |
| !! | TGGTAAGTGAGAGCACCCTC+AGG | - | chr7.2:93498874-93498893 | MS.gene54331:intron | 55.0% |
| TGGCTGGCAGTGTGACCTGA+GGG | + | chr7.2:93498892-93498911 | None:intergenic | 60.0% | |
| TTGGCTGGCAGTGTGACCTG+AGG | + | chr7.2:93498893-93498912 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 93498384 | 93501962 | 93498384 | ID=MS.gene54331 |
| chr7.2 | mRNA | 93498384 | 93501962 | 93498384 | ID=MS.gene54331.t1;Parent=MS.gene54331 |
| chr7.2 | exon | 93501834 | 93501962 | 93501834 | ID=MS.gene54331.t1.exon1;Parent=MS.gene54331.t1 |
| chr7.2 | CDS | 93501834 | 93501962 | 93501834 | ID=cds.MS.gene54331.t1;Parent=MS.gene54331.t1 |
| chr7.2 | exon | 93501683 | 93501733 | 93501683 | ID=MS.gene54331.t1.exon2;Parent=MS.gene54331.t1 |
| chr7.2 | CDS | 93501683 | 93501733 | 93501683 | ID=cds.MS.gene54331.t1;Parent=MS.gene54331.t1 |
| chr7.2 | exon | 93498943 | 93499075 | 93498943 | ID=MS.gene54331.t1.exon3;Parent=MS.gene54331.t1 |
| chr7.2 | CDS | 93498943 | 93499075 | 93498943 | ID=cds.MS.gene54331.t1;Parent=MS.gene54331.t1 |
| chr7.2 | exon | 93498384 | 93498499 | 93498384 | ID=MS.gene54331.t1.exon4;Parent=MS.gene54331.t1 |
| chr7.2 | CDS | 93498384 | 93498499 | 93498384 | ID=cds.MS.gene54331.t1;Parent=MS.gene54331.t1 |
| Gene Sequence |
| Protein sequence |
