Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55048.t1 | XP_003624347.1 | 91.8 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 3.40E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55048.t1 | Q9LF14 | 77.0 | 204 | 47 | 0 | 49 | 252 | 37 | 240 | 1.2e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55048.t1 | G7KUB5 | 91.8 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 2.4e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene55048 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene55048 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene050315 | MS.gene55048 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene55048 | 0.819453 | 1.15E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene55048 | -0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene050529 | MS.gene55048 | 0.815299 | 9.92E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene55048 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene55048 | 0.845071 | 5.10E-59 | -1.69E-46 |
| MS.gene050812 | MS.gene55048 | 0.826895 | 2.11E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene55048 | 0.828316 | 9.62E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene55048 | 0.822144 | 2.77E-53 | -1.69E-46 |
| MS.gene051171 | MS.gene55048 | 0.808146 | 3.57E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene55048 | 0.815284 | 1.00E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene55048 | 0.839594 | 1.44E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene55048 | 0.838305 | 3.11E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene55048 | -0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene052134 | MS.gene55048 | 0.811551 | 6.62E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene55048 | 0.804662 | 1.94E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene55048 | 0.801747 | 7.78E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene55048 | 0.815535 | 8.79E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene55048 | 0.800748 | 1.25E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene55048 | 0.818463 | 1.93E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene55048 | 0.819462 | 1.15E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene55048 | 0.846894 | 1.63E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene55048 | 0.827902 | 1.21E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene55048 | 0.803142 | 4.01E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene55048 | 0.832276 | 1.04E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene55048 | 0.824001 | 1.02E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene55048 | 0.823515 | 1.33E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene55048 | 0.824136 | 9.50E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene55048 | 0.831911 | 1.28E-55 | -1.69E-46 |
| MS.gene055370 | MS.gene55048 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene055412 | MS.gene55048 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene55048 | 0.843043 | 1.79E-58 | -1.69E-46 |
| MS.gene055564 | MS.gene55048 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene056407 | MS.gene55048 | 0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene056633 | MS.gene55048 | 0.824007 | 1.02E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene55048 | 0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene55048 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene55048 | 0.882115 | 1.37E-70 | -1.69E-46 |
| MS.gene057011 | MS.gene55048 | 0.815861 | 7.44E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene55048 | 0.868941 | 4.49E-66 | -1.69E-46 |
| MS.gene057196 | MS.gene55048 | 0.827771 | 1.30E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene55048 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene55048 | 0.861326 | 1.11E-63 | -1.69E-46 |
| MS.gene058276 | MS.gene55048 | 0.825092 | 5.66E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene55048 | 0.802084 | 6.64E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene55048 | 0.804328 | 2.28E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene55048 | 0.816572 | 5.16E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene55048 | 0.836953 | 6.92E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene55048 | 0.816075 | 6.67E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene55048 | 0.820958 | 5.21E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene55048 | 0.821554 | 3.80E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene55048 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene55048 | 0.846765 | 1.77E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene55048 | 0.800834 | 1.20E-48 | -1.69E-46 |
| MS.gene061154 | MS.gene55048 | 0.859609 | 3.67E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78610 | MS.gene55048 | PPI |
| MS.gene55048 | MS.gene023541 | PPI |
| MS.gene08762 | MS.gene55048 | PPI |
| MS.gene55048 | MS.gene09080 | PPI |
| MS.gene55353 | MS.gene55048 | PPI |
| MS.gene85927 | MS.gene55048 | PPI |
| MS.gene55048 | MS.gene53154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55048.t1 | MTR_7g082240 | 91.765 | 255 | 14 | 4 | 1 | 252 | 1 | 251 | 5.95e-167 | 461 |
| MS.gene55048.t1 | MTR_8g095500 | 88.608 | 237 | 19 | 3 | 16 | 252 | 15 | 243 | 4.00e-149 | 416 |
| MS.gene55048.t1 | MTR_8g085910 | 59.694 | 196 | 79 | 0 | 57 | 252 | 17 | 212 | 1.79e-84 | 251 |
| MS.gene55048.t1 | MTR_8g103890 | 51.759 | 199 | 96 | 0 | 50 | 248 | 57 | 255 | 4.48e-76 | 231 |
| MS.gene55048.t1 | MTR_8g103890 | 58.571 | 140 | 58 | 0 | 50 | 189 | 57 | 196 | 9.30e-59 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55048.t1 | AT5G16140 | 76.961 | 204 | 47 | 0 | 49 | 252 | 37 | 240 | 1.52e-119 | 341 |
| MS.gene55048.t1 | AT5G16140 | 76.961 | 204 | 47 | 0 | 49 | 252 | 37 | 240 | 1.52e-119 | 341 |
| MS.gene55048.t1 | AT5G38290 | 64.257 | 249 | 85 | 2 | 4 | 252 | 6 | 250 | 1.84e-115 | 331 |
| MS.gene55048.t1 | AT5G38290 | 64.257 | 249 | 85 | 2 | 4 | 252 | 2 | 246 | 2.13e-115 | 331 |
| MS.gene55048.t1 | AT5G19830 | 57.868 | 197 | 83 | 0 | 55 | 251 | 16 | 212 | 7.50e-82 | 244 |
| MS.gene55048.t1 | AT1G18440 | 56.452 | 186 | 81 | 0 | 57 | 242 | 94 | 279 | 2.62e-79 | 241 |
| MS.gene55048.t1 | AT1G18440 | 62.857 | 105 | 39 | 0 | 57 | 161 | 94 | 198 | 7.45e-46 | 153 |
Find 61 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAACCCTCCTGGAACTA+TGG | 0.238093 | 7.2:+24837455 | MS.gene55048:CDS |
| ATAATGAAAGTTCCTTCTTC+TGG | 0.257421 | 7.2:-24835569 | None:intergenic |
| CATGTCAATAGATTCAATTT+AGG | 0.292948 | 7.2:+24837978 | MS.gene55048:CDS |
| ATGTCAATAGATTCAATTTA+GGG | 0.304320 | 7.2:+24837979 | MS.gene55048:CDS |
| GTGCCATGGTATTTATTTCC+AGG | 0.314037 | 7.2:-24835715 | None:intergenic |
| TCCTTGGCTTGTTGTTGGCT+TGG | 0.320294 | 7.2:+24835687 | MS.gene55048:CDS |
| TTGATATGTACAGGTTCTAT+AGG | 0.328169 | 7.2:+24836125 | MS.gene55048:intron |
| TGATGCCCATGTCCACCTTT+AGG | 0.328247 | 7.2:-24836592 | None:intergenic |
| CCTTGGCTTGTTGTTGGCTT+GGG | 0.334876 | 7.2:+24835688 | MS.gene55048:CDS |
| CTAAAATTCATGTATGTTTG+AGG | 0.385508 | 7.2:-24836173 | None:intergenic |
| GCTCTTAAATCCATAGTTCC+AGG | 0.394847 | 7.2:-24837465 | None:intergenic |
| TATACTCCTTGGCTTGTTGT+TGG | 0.402188 | 7.2:+24835682 | MS.gene55048:CDS |
| AAATAATTGATAGTCTTTCT+CGG | 0.408351 | 7.2:+24835954 | MS.gene55048:CDS |
| ATGGCAGGTTGATGAGTCAT+TGG | 0.410508 | 7.2:+24837905 | MS.gene55048:intron |
| TGAAGCTTTAAAACACCGTT+TGG | 0.415620 | 7.2:-24836568 | None:intergenic |
| AAATACGTACAACAAGAATA+TGG | 0.417215 | 7.2:-24836443 | None:intergenic |
| TTAAGACCTTAGTGCTCAAT+GGG | 0.429285 | 7.2:+24837946 | MS.gene55048:CDS |
| TAATGAAAGTTCCTTCTTCT+GGG | 0.432772 | 7.2:-24835568 | None:intergenic |
| GTTAAGACCTTAGTGCTCAA+TGG | 0.445730 | 7.2:+24837945 | MS.gene55048:CDS |
| ATACAGTCAAAAGCCTTGAT+TGG | 0.447917 | 7.2:+24836001 | MS.gene55048:CDS |
| TGAGGTTTCGCCAACAAAAC+CGG | 0.453631 | 7.2:-24836155 | None:intergenic |
| AAAGTTCCTTCTTCTGGGAT+AGG | 0.460451 | 7.2:-24835563 | None:intergenic |
| AATTGAATCTATTGACATGA+TGG | 0.460838 | 7.2:-24837974 | None:intergenic |
| TCAAAAGCCTTGATTGGAAT+AGG | 0.471258 | 7.2:+24836007 | MS.gene55048:CDS |
| GTTAAAGATAAGGTTGGACT+TGG | 0.472315 | 7.2:-24835541 | None:intergenic |
| GTAGGAATCGGAAACCCTCC+TGG | 0.472720 | 7.2:+24837447 | MS.gene55048:intron |
| CTTTAACCTATCCCAGAAGA+AGG | 0.477782 | 7.2:+24835557 | MS.gene55048:CDS |
| TGCCATGGTATTTATTTCCA+GGG | 0.492429 | 7.2:-24835714 | None:intergenic |
| TCTGGGATAGGTTAAAGATA+AGG | 0.494074 | 7.2:-24835551 | None:intergenic |
| CTTCAACCTAAAGGTGGACA+TGG | 0.505877 | 7.2:+24836586 | MS.gene55048:CDS |
| TCTACAAAAGTTCAGTTCAG+TGG | 0.508418 | 7.2:+24837494 | MS.gene55048:CDS |
| CAGTTCAGTGGAAAGAAAGC+AGG | 0.510677 | 7.2:+24837506 | MS.gene55048:CDS |
| GCTTTAAAACACCGTTTGGA+AGG | 0.513540 | 7.2:-24836564 | None:intergenic |
| GTGGACATGGGCATCACAAT+GGG | 0.516901 | 7.2:+24836599 | MS.gene55048:CDS |
| CAATGGAGATACTAATAAAG+TGG | 0.520031 | 7.2:+24835657 | MS.gene55048:CDS |
| GTTGTTGGCTTGGGTAACCC+TGG | 0.525883 | 7.2:+24835697 | MS.gene55048:CDS |
| TGATGCACCTATTCCAATCA+AGG | 0.536942 | 7.2:-24836014 | None:intergenic |
| ATAAAGTGGAATATACTCCT+TGG | 0.537329 | 7.2:+24835671 | MS.gene55048:CDS |
| GTTAAAGGTTGGGCCTCTTG+CGG | 0.543533 | 7.2:+24836398 | MS.gene55048:intron |
| AATGTGATTGGCCATTTGGA+TGG | 0.549742 | 7.2:+24837309 | MS.gene55048:CDS |
| GATAGTCTTTCTCGGTCAGA+AGG | 0.550469 | 7.2:+24835962 | MS.gene55048:CDS |
| TCTCCATTGTTATTTGTCTG+TGG | 0.553915 | 7.2:-24835643 | None:intergenic |
| GTTAAACCCATTGAGCACTA+AGG | 0.557059 | 7.2:-24837952 | None:intergenic |
| GGATAGGTTAAAGATAAGGT+TGG | 0.559820 | 7.2:-24835547 | None:intergenic |
| AGGTTCTATAGGAGAAGTAC+CGG | 0.559828 | 7.2:+24836136 | MS.gene55048:intron |
| CTGTGGAACCGAACAATGAA+CGG | 0.565610 | 7.2:-24835626 | None:intergenic |
| TTAAAGCTTCAACCTAAAGG+TGG | 0.579023 | 7.2:+24836580 | MS.gene55048:CDS |
| GGTGGACATGGGCATCACAA+TGG | 0.579435 | 7.2:+24836598 | MS.gene55048:CDS |
| AATCACGAGAACCATCCAAA+TGG | 0.582644 | 7.2:-24837320 | None:intergenic |
| CCCAAGCCAACAACAAGCCA+AGG | 0.596759 | 7.2:-24835688 | None:intergenic |
| TTACATTGTGTCTAGTGCCA+TGG | 0.610008 | 7.2:-24835729 | None:intergenic |
| GATGAAACTAGCCTTCCAAA+CGG | 0.612453 | 7.2:+24836553 | MS.gene55048:CDS |
| ACTCGATAATATGCCGCAAG+AGG | 0.622540 | 7.2:-24836411 | None:intergenic |
| TTAAATCCATAGTTCCAGGA+GGG | 0.631727 | 7.2:-24837461 | None:intergenic |
| AACAAACCGATTGCAAGTCG+AGG | 0.634342 | 7.2:-24837345 | None:intergenic |
| GTTGATGAGTCATTGGAGCA+AGG | 0.639313 | 7.2:+24837912 | MS.gene55048:CDS |
| TTCAACCTAAAGGTGGACAT+GGG | 0.647848 | 7.2:+24836587 | MS.gene55048:CDS |
| AACCCTGGAAATAAATACCA+TGG | 0.650251 | 7.2:+24835712 | MS.gene55048:CDS |
| ACAACAAGAATATGGCGCAA+AGG | 0.659160 | 7.2:-24836435 | None:intergenic |
| GTTCCACAGACAAATAACAA+TGG | 0.675048 | 7.2:+24835640 | MS.gene55048:CDS |
| CTTAAATCCATAGTTCCAGG+AGG | 0.685463 | 7.2:-24837462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATAAAATAAAAAATCAA+TGG | - | chr7.2:24836047-24836066 | None:intergenic | 10.0% |
| !!! | TATTAAGATTTTTTAAGTAT+CGG | + | chr7.2:24836652-24836671 | MS.gene55048:intron | 10.0% |
| !! | AAATAAAAAGAAAACAGTAT+TGG | - | chr7.2:24837880-24837899 | None:intergenic | 15.0% |
| !! | AATTGAATAAAACAAATGAA+TGG | - | chr7.2:24835760-24835779 | None:intergenic | 15.0% |
| !! | ATCAATTCAAATACAAAAAA+AGG | - | chr7.2:24837856-24837875 | None:intergenic | 15.0% |
| !!! | CACATTTTTAATATTGTTAA+AGG | + | chr7.2:24836383-24836402 | MS.gene55048:intron | 15.0% |
| !!! | TTTTAATATTGTTAAAGGTT+GGG | + | chr7.2:24836388-24836407 | MS.gene55048:intron | 15.0% |
| !!! | TTTTTAATATTGTTAAAGGT+TGG | + | chr7.2:24836387-24836406 | MS.gene55048:intron | 15.0% |
| !! | AATAAGTCAAGGAAAAAAAA+AGG | - | chr7.2:24837146-24837165 | None:intergenic | 20.0% |
| !! | AGTAAAAAGAAGAATTTCAA+CGG | - | chr7.2:24836868-24836887 | None:intergenic | 20.0% |
| !! | ATGTCAATAGATTCAATTTA+GGG | + | chr7.2:24837979-24837998 | MS.gene55048:CDS | 20.0% |
| !! | GAATTAAGATATGTATAGTA+AGG | + | chr7.2:24836792-24836811 | MS.gene55048:intron | 20.0% |
| !! | TGTTACAGTTTAGAAATTTA+TGG | + | chr7.2:24836484-24836503 | MS.gene55048:intron | 20.0% |
| !! | TTAAATAAGTCAAGAAAACA+AGG | - | chr7.2:24837195-24837214 | None:intergenic | 20.0% |
| !! | TTATCTAGGTTTACATATTA+TGG | - | chr7.2:24836976-24836995 | None:intergenic | 20.0% |
| !!! | AAACATACATGAATTTTAGT+GGG | + | chr7.2:24836177-24836196 | MS.gene55048:CDS | 20.0% |
| !!! | AAATAATTGATAGTCTTTCT+CGG | + | chr7.2:24835954-24835973 | MS.gene55048:CDS | 20.0% |
| !!! | AAATTGCATTTTTACTTTGT+AGG | + | chr7.2:24837429-24837448 | MS.gene55048:intron | 20.0% |
| !!! | CAAGATTTAAGTTATTATCT+AGG | - | chr7.2:24836990-24837009 | None:intergenic | 20.0% |
| !!! | CTTTTTATTTTTTTAATGGC+AGG | + | chr7.2:24837890-24837909 | MS.gene55048:intron | 20.0% |
| !!! | GAAATTTATGGATTTTTCTT+TGG | + | chr7.2:24836496-24836515 | MS.gene55048:intron | 20.0% |
| !!! | TATTCTATACATTTTAGTGA+TGG | + | chr7.2:24837046-24837065 | MS.gene55048:intron | 20.0% |
| !!! | TTGTTGTATTTCTAATATCA+TGG | + | chr7.2:24836628-24836647 | MS.gene55048:intron | 20.0% |
| !!! | TTTTATGGATAATACAAAGA+CGG | + | chr7.2:24837102-24837121 | MS.gene55048:intron | 20.0% |
| !!! | TTTTTTTCCTTGACTTATTT+AGG | + | chr7.2:24837147-24837166 | MS.gene55048:intron | 20.0% |
| ! | AAATACGTACAACAAGAATA+TGG | - | chr7.2:24836446-24836465 | None:intergenic | 25.0% |
| ! | AAGATATGTATAGTAAGGAT+TGG | + | chr7.2:24836797-24836816 | MS.gene55048:intron | 25.0% |
| ! | AATAACTTAAATCTTGCCAT+GGG | + | chr7.2:24836994-24837013 | MS.gene55048:intron | 25.0% |
| ! | AATTGAATCTATTGACATGA+TGG | - | chr7.2:24837977-24837996 | None:intergenic | 25.0% |
| ! | AGATATGTATAGTAAGGATT+GGG | + | chr7.2:24836798-24836817 | MS.gene55048:intron | 25.0% |
| ! | AGCAAATTATAAGTTAGACA+AGG | + | chr7.2:24837733-24837752 | MS.gene55048:intron | 25.0% |
| ! | CATGTCAATAGATTCAATTT+AGG | + | chr7.2:24837978-24837997 | MS.gene55048:CDS | 25.0% |
| ! | CCAAATATGATTTCAAGAAT+AGG | + | chr7.2:24836677-24836696 | MS.gene55048:intron | 25.0% |
| ! | CCTATTCTTGAAATCATATT+TGG | - | chr7.2:24836680-24836699 | None:intergenic | 25.0% |
| ! | CTAAAATTCATGTATGTTTG+AGG | - | chr7.2:24836176-24836195 | None:intergenic | 25.0% |
| ! | GAAATTATGAAGTCTATAAC+TGG | + | chr7.2:24837262-24837281 | MS.gene55048:intron | 25.0% |
| ! | TAATAACTTAAATCTTGCCA+TGG | + | chr7.2:24836993-24837012 | MS.gene55048:intron | 25.0% |
| ! | TACAGATTGAAAAATGTGAT+TGG | + | chr7.2:24837297-24837316 | MS.gene55048:intron | 25.0% |
| ! | TCCATAGATAAGAACAATTT+AGG | + | chr7.2:24837644-24837663 | MS.gene55048:intron | 25.0% |
| ! | TCCTAAATTGTTCTTATCTA+TGG | - | chr7.2:24837648-24837667 | None:intergenic | 25.0% |
| ! | TTACTTCATGAATAATGAGA+TGG | + | chr7.2:24836728-24836747 | MS.gene55048:intron | 25.0% |
| ! | TTCGATTATTTGATATGTAC+AGG | + | chr7.2:24836116-24836135 | MS.gene55048:intron | 25.0% |
| ! | TTTATGGATAATACAAAGAC+GGG | + | chr7.2:24837103-24837122 | MS.gene55048:intron | 25.0% |
| ! | TTTCTAAACTGTAACAAAAC+AGG | - | chr7.2:24836480-24836499 | None:intergenic | 25.0% |
| !! | ACAATTTAGGATTTAGTTTC+TGG | + | chr7.2:24837657-24837676 | MS.gene55048:intron | 25.0% |
| !! | CAAACATACATGAATTTTAG+TGG | + | chr7.2:24836176-24836195 | MS.gene55048:CDS | 25.0% |
| !! | CATTTTTACTTTGTAGGAAT+CGG | + | chr7.2:24837435-24837454 | MS.gene55048:intron | 25.0% |
| !! | GTTTGTGGAAATTTTTATGT+AGG | + | chr7.2:24836525-24836544 | MS.gene55048:intron | 25.0% |
| !! | TCTTTTTACTCTTAACAATG+AGG | + | chr7.2:24836878-24836897 | MS.gene55048:intron | 25.0% |
| !! | TTGCAACTTCTATGATTTTA+TGG | + | chr7.2:24837087-24837106 | MS.gene55048:intron | 25.0% |
| !! | TTGTACTTAATCTGATTTTG+TGG | + | chr7.2:24835907-24835926 | MS.gene55048:intron | 25.0% |
| !!! | AACATACATGAATTTTAGTG+GGG | + | chr7.2:24836178-24836197 | MS.gene55048:CDS | 25.0% |
| !!! | TTTAGTTTCTGGTTAATAGA+TGG | + | chr7.2:24837668-24837687 | MS.gene55048:intron | 25.0% |
| AAACACTTTAAGTGCATGTT+TGG | - | chr7.2:24835869-24835888 | None:intergenic | 30.0% | |
| AATATTATACAGGTTACCCA+TGG | - | chr7.2:24837013-24837032 | None:intergenic | 30.0% | |
| ATAAAGTGGAATATACTCCT+TGG | + | chr7.2:24835671-24835690 | MS.gene55048:CDS | 30.0% | |
| ATAATGAAAGTTCCTTCTTC+TGG | - | chr7.2:24835572-24835591 | None:intergenic | 30.0% | |
| ATCAATGTTGCAATTAACCA+TGG | - | chr7.2:24836083-24836102 | None:intergenic | 30.0% | |
| CAATGGAGATACTAATAAAG+TGG | + | chr7.2:24835657-24835676 | MS.gene55048:CDS | 30.0% | |
| GTTGAGAGCAAATATTATAC+AGG | - | chr7.2:24837023-24837042 | None:intergenic | 30.0% | |
| TAATGAAAGTTCCTTCTTCT+GGG | - | chr7.2:24835571-24835590 | None:intergenic | 30.0% | |
| TATACTCTGATAAACAACCA+AGG | - | chr7.2:24837404-24837423 | None:intergenic | 30.0% | |
| TCAATGTTGCAATTAACCAT+GGG | - | chr7.2:24836082-24836101 | None:intergenic | 30.0% | |
| TCATAATTTCCCAGTATAAG+AGG | - | chr7.2:24837252-24837271 | None:intergenic | 30.0% | |
| TTGATATGTACAGGTTCTAT+AGG | + | chr7.2:24836125-24836144 | MS.gene55048:intron | 30.0% | |
| TTTATAAGCTGATATAGCCT+TGG | + | chr7.2:24837384-24837403 | MS.gene55048:intron | 30.0% | |
| ! | ATCATTTTCCGTTCATTGTT+CGG | + | chr7.2:24835618-24835637 | MS.gene55048:CDS | 30.0% |
| ! | TTTAGCTCCTAAATAAGTCA+AGG | - | chr7.2:24837157-24837176 | None:intergenic | 30.0% |
| ! | TTTTACTCTTAACAATGAGG+AGG | + | chr7.2:24836881-24836900 | MS.gene55048:intron | 30.0% |
| ! | TTTTGTGGATTCTCTATGTT+AGG | + | chr7.2:24835922-24835941 | MS.gene55048:intron | 30.0% |
| !! | GATGTTTTAAGTGAATAACG+AGG | - | chr7.2:24835595-24835614 | None:intergenic | 30.0% |
| !! | TTTCTTTGGCTTTAAGTTTG+TGG | + | chr7.2:24836510-24836529 | MS.gene55048:intron | 30.0% |
| !!! | GTTTTAAAGCTTCAACCTAA+AGG | + | chr7.2:24836577-24836596 | MS.gene55048:CDS | 30.0% |
| AACCCTGGAAATAAATACCA+TGG | + | chr7.2:24835712-24835731 | MS.gene55048:CDS | 35.0% | |
| AAGGCAAATATGTAGACAGT+TGG | + | chr7.2:24837752-24837771 | MS.gene55048:intron | 35.0% | |
| AAGTCATCTCCTCTTATACT+GGG | + | chr7.2:24837240-24837259 | MS.gene55048:intron | 35.0% | |
| ACACTTGATAGAAGACTAGA+AGG | - | chr7.2:24837537-24837556 | None:intergenic | 35.0% | |
| ATACAGTCAAAAGCCTTGAT+TGG | + | chr7.2:24836001-24836020 | MS.gene55048:CDS | 35.0% | |
| GGATAGGTTAAAGATAAGGT+TGG | - | chr7.2:24835550-24835569 | None:intergenic | 35.0% | |
| GTTAAAGATAAGGTTGGACT+TGG | - | chr7.2:24835544-24835563 | None:intergenic | 35.0% | |
| GTTCCACAGACAAATAACAA+TGG | + | chr7.2:24835640-24835659 | MS.gene55048:CDS | 35.0% | |
| TCAAAAGCCTTGATTGGAAT+AGG | + | chr7.2:24836007-24836026 | MS.gene55048:CDS | 35.0% | |
| TCTACAAAAGTTCAGTTCAG+TGG | + | chr7.2:24837494-24837513 | MS.gene55048:CDS | 35.0% | |
| TGCCATGGTATTTATTTCCA+GGG | - | chr7.2:24835717-24835736 | None:intergenic | 35.0% | |
| TTAAAGCTTCAACCTAAAGG+TGG | + | chr7.2:24836580-24836599 | MS.gene55048:CDS | 35.0% | |
| TTAAATCCATAGTTCCAGGA+GGG | - | chr7.2:24837464-24837483 | None:intergenic | 35.0% | |
| TTAAGACCTTAGTGCTCAAT+GGG | + | chr7.2:24837946-24837965 | MS.gene55048:CDS | 35.0% | |
| ! | GAAAAATGTGATTGGCCATT+TGG | + | chr7.2:24837305-24837324 | MS.gene55048:CDS | 35.0% |
| ! | TCTGGGATAGGTTAAAGATA+AGG | - | chr7.2:24835554-24835573 | None:intergenic | 35.0% |
| !! | CATGAATTTTAGTGGGGAAT+CGG | + | chr7.2:24836184-24836203 | MS.gene55048:CDS | 35.0% |
| !! | TCTCCATTGTTATTTGTCTG+TGG | - | chr7.2:24835646-24835665 | None:intergenic | 35.0% |
| !! | TGAAGCTTTAAAACACCGTT+TGG | - | chr7.2:24836571-24836590 | None:intergenic | 35.0% |
| AATCACGAGAACCATCCAAA+TGG | - | chr7.2:24837323-24837342 | None:intergenic | 40.0% | |
| AATGAGGAGGTGGTATTATG+TGG | + | chr7.2:24836894-24836913 | MS.gene55048:intron | 40.0% | |
| ACAACAAGAATATGGCGCAA+AGG | - | chr7.2:24836438-24836457 | None:intergenic | 40.0% | |
| ACCTACAAAAGCAATAGGAG+GGG | + | chr7.2:24837779-24837798 | MS.gene55048:intron | 40.0% | |
| ATAGTAAGGATTGGGCTTCT+AGG | + | chr7.2:24836806-24836825 | MS.gene55048:intron | 40.0% | |
| ATGAGGAGGTGGTATTATGT+GGG | + | chr7.2:24836895-24836914 | MS.gene55048:intron | 40.0% | |
| CAAGTCATCTCCTCTTATAC+TGG | + | chr7.2:24837239-24837258 | MS.gene55048:intron | 40.0% | |
| CTTAAATCCATAGTTCCAGG+AGG | - | chr7.2:24837465-24837484 | None:intergenic | 40.0% | |
| CTTTAACCTATCCCAGAAGA+AGG | + | chr7.2:24835557-24835576 | MS.gene55048:CDS | 40.0% | |
| GACCTACAAAAGCAATAGGA+GGG | + | chr7.2:24837778-24837797 | MS.gene55048:intron | 40.0% | |
| GCTCTTAAATCCATAGTTCC+AGG | - | chr7.2:24837468-24837487 | None:intergenic | 40.0% | |
| GTGCCATGGTATTTATTTCC+AGG | - | chr7.2:24835718-24835737 | None:intergenic | 40.0% | |
| GTGGATTCTCTATGTTAGGT+TGG | + | chr7.2:24835926-24835945 | MS.gene55048:intron | 40.0% | |
| GTGTGACCTACAAAAGCAAT+AGG | + | chr7.2:24837774-24837793 | MS.gene55048:intron | 40.0% | |
| GTTAAACCCATTGAGCACTA+AGG | - | chr7.2:24837955-24837974 | None:intergenic | 40.0% | |
| GTTAAGACCTTAGTGCTCAA+TGG | + | chr7.2:24837945-24837964 | MS.gene55048:CDS | 40.0% | |
| TACTCTTAACAATGAGGAGG+TGG | + | chr7.2:24836884-24836903 | MS.gene55048:intron | 40.0% | |
| TGACCTACAAAAGCAATAGG+AGG | + | chr7.2:24837777-24837796 | MS.gene55048:intron | 40.0% | |
| TGATGCACCTATTCCAATCA+AGG | - | chr7.2:24836017-24836036 | None:intergenic | 40.0% | |
| TGTTGCAATTAACCATGGGA+AGG | - | chr7.2:24836078-24836097 | None:intergenic | 40.0% | |
| TTACATTGTGTCTAGTGCCA+TGG | - | chr7.2:24835732-24835751 | None:intergenic | 40.0% | |
| TTCAACCTAAAGGTGGACAT+GGG | + | chr7.2:24836587-24836606 | MS.gene55048:CDS | 40.0% | |
| ! | AATGTGATTGGCCATTTGGA+TGG | + | chr7.2:24837309-24837328 | MS.gene55048:CDS | 40.0% |
| ! | AGGTTCTATAGGAGAAGTAC+CGG | + | chr7.2:24836136-24836155 | MS.gene55048:intron | 40.0% |
| ! | ATCTTAGTGCCACAGTTTTC+AGG | - | chr7.2:24837810-24837829 | None:intergenic | 40.0% |
| !! | AAAGTTCCTTCTTCTGGGAT+AGG | - | chr7.2:24835566-24835585 | None:intergenic | 40.0% |
| !! | GATGAAACTAGCCTTCCAAA+CGG | + | chr7.2:24836553-24836572 | MS.gene55048:CDS | 40.0% |
| !! | GATTTTCCTCGACTTGCAAT+CGG | + | chr7.2:24837339-24837358 | MS.gene55048:CDS | 40.0% |
| !! | GCTTTAAAACACCGTTTGGA+AGG | - | chr7.2:24836567-24836586 | None:intergenic | 40.0% |
| !! | TATACTCCTTGGCTTGTTGT+TGG | + | chr7.2:24835682-24835701 | MS.gene55048:CDS | 40.0% |
| !! | TGTGTTGGTGGTGTCATATA+AGG | + | chr7.2:24836830-24836849 | MS.gene55048:intron | 40.0% |
| !! | TTTGCTATTGAACCTTCCCA+TGG | + | chr7.2:24836063-24836082 | MS.gene55048:intron | 40.0% |
| AACAAACCGATTGCAAGTCG+AGG | - | chr7.2:24837348-24837367 | None:intergenic | 45.0% | |
| ACACACGCACACACTGAAAT+TGG | + | chr7.2:24836255-24836274 | MS.gene55048:intron | 45.0% | |
| ACTCGATAATATGCCGCAAG+AGG | - | chr7.2:24836414-24836433 | None:intergenic | 45.0% | |
| CAGTTCAGTGGAAAGAAAGC+AGG | + | chr7.2:24837506-24837525 | MS.gene55048:CDS | 45.0% | |
| CTGTGGAACCGAACAATGAA+CGG | - | chr7.2:24835629-24835648 | None:intergenic | 45.0% | |
| CTTCAACCTAAAGGTGGACA+TGG | + | chr7.2:24836586-24836605 | MS.gene55048:CDS | 45.0% | |
| GATAGTCTTTCTCGGTCAGA+AGG | + | chr7.2:24835962-24835981 | MS.gene55048:CDS | 45.0% | |
| GCACACACTGAAATTGGTCA+TGG | + | chr7.2:24836261-24836280 | MS.gene55048:intron | 45.0% | |
| GGGGTTAAACCTGAAAACTG+TGG | + | chr7.2:24837798-24837817 | MS.gene55048:intron | 45.0% | |
| GTCATATAAGGCGGATACGA+AGG | + | chr7.2:24836842-24836861 | MS.gene55048:intron | 45.0% | |
| TGAGGTTTCGCCAACAAAAC+CGG | - | chr7.2:24836158-24836177 | None:intergenic | 45.0% | |
| ! | GTTGATGAGTCATTGGAGCA+AGG | + | chr7.2:24837912-24837931 | MS.gene55048:CDS | 45.0% |
| !! | ACCCCTCCTATTGCTTTTGT+AGG | - | chr7.2:24837783-24837802 | None:intergenic | 45.0% |
| !! | ATGGCAGGTTGATGAGTCAT+TGG | + | chr7.2:24837905-24837924 | MS.gene55048:intron | 45.0% |
| !! | ATTGGGCTTCTAGGATGTGT+TGG | + | chr7.2:24836815-24836834 | MS.gene55048:intron | 45.0% |
| !! | GTTGGTGGTGTCATATAAGG+CGG | + | chr7.2:24836833-24836852 | MS.gene55048:intron | 45.0% |
| !!! | AGGAGAAGTACCGGTTTTGT+TGG | + | chr7.2:24836145-24836164 | MS.gene55048:CDS | 45.0% |
| !!! | TTTTCTTTTTATTTTTTTAA+TGG | + | chr7.2:24837886-24837905 | MS.gene55048:intron | 5.0% |
| GTGGACATGGGCATCACAAT+GGG | + | chr7.2:24836599-24836618 | MS.gene55048:CDS | 50.0% | |
| GTTAAAGGTTGGGCCTCTTG+CGG | + | chr7.2:24836398-24836417 | MS.gene55048:intron | 50.0% | |
| TGATGCCCATGTCCACCTTT+AGG | - | chr7.2:24836595-24836614 | None:intergenic | 50.0% | |
| !! | CCTTGGCTTGTTGTTGGCTT+GGG | + | chr7.2:24835688-24835707 | MS.gene55048:CDS | 50.0% |
| !! | TCCTTGGCTTGTTGTTGGCT+TGG | + | chr7.2:24835687-24835706 | MS.gene55048:CDS | 50.0% |
| CCCAAGCCAACAACAAGCCA+AGG | - | chr7.2:24835691-24835710 | None:intergenic | 55.0% | |
| CGGAAACCCTCCTGGAACTA+TGG | + | chr7.2:24837455-24837474 | MS.gene55048:CDS | 55.0% | |
| GGTGGACATGGGCATCACAA+TGG | + | chr7.2:24836598-24836617 | MS.gene55048:CDS | 55.0% | |
| GTAGGAATCGGAAACCCTCC+TGG | + | chr7.2:24837447-24837466 | MS.gene55048:intron | 55.0% | |
| !! | GGGCTTCTAGGATGTGTTGG+TGG | + | chr7.2:24836818-24836837 | MS.gene55048:intron | 55.0% |
| !! | GTTGTTGGCTTGGGTAACCC+TGG | + | chr7.2:24835697-24835716 | MS.gene55048:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 24835520 | 24838028 | 24835520 | ID=MS.gene55048 |
| chr7.2 | mRNA | 24835520 | 24838028 | 24835520 | ID=MS.gene55048.t1;Parent=MS.gene55048 |
| chr7.2 | exon | 24835520 | 24835747 | 24835520 | ID=MS.gene55048.t1.exon1;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24835520 | 24835747 | 24835520 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24835944 | 24836028 | 24835944 | ID=MS.gene55048.t1.exon2;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24835944 | 24836028 | 24835944 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24836138 | 24836205 | 24836138 | ID=MS.gene55048.t1.exon3;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24836138 | 24836205 | 24836138 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24836405 | 24836455 | 24836405 | ID=MS.gene55048.t1.exon4;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24836405 | 24836455 | 24836405 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24836547 | 24836620 | 24836547 | ID=MS.gene55048.t1.exon5;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24836547 | 24836620 | 24836547 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24837302 | 24837360 | 24837302 | ID=MS.gene55048.t1.exon6;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24837302 | 24837360 | 24837302 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24837451 | 24837527 | 24837451 | ID=MS.gene55048.t1.exon7;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24837451 | 24837527 | 24837451 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| chr7.2 | exon | 24837912 | 24838028 | 24837912 | ID=MS.gene55048.t1.exon8;Parent=MS.gene55048.t1 |
| chr7.2 | CDS | 24837912 | 24838028 | 24837912 | ID=cds.MS.gene55048.t1;Parent=MS.gene55048.t1 |
| Gene Sequence |
| Protein sequence |
