Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62813.t1 | XP_013457666.1 | 94.8 | 615 | 32 | 0 | 1 | 615 | 1 | 615 | 0.00E+00 | 1151.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62813.t1 | Q8LGM7 | 23.4 | 321 | 185 | 12 | 67 | 353 | 2 | 295 | 7.5e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62813.t1 | A0A072UPS3 | 94.8 | 615 | 32 | 0 | 1 | 615 | 1 | 615 | 0.0e+00 | 1151.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene62813 | 0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene049681 | MS.gene62813 | 0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene049993 | MS.gene62813 | 0.879 | 1.78E-69 | -1.69E-46 |
| MS.gene050397 | MS.gene62813 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene62813 | -0.820095 | 8.22E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene62813 | 0.817139 | 3.85E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene62813 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene62813 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene62813 | 0.828332 | 9.54E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene62813 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene62813 | -0.902063 | 1.42E-78 | -1.69E-46 |
| MS.gene052253 | MS.gene62813 | 0.832454 | 9.37E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene62813 | 0.832984 | 6.92E-56 | -1.69E-46 |
| MS.gene054011 | MS.gene62813 | 0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene62813 | 0.806047 | 9.94E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene62813 | 0.805843 | 1.10E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene62813 | 0.880754 | 4.23E-70 | -1.69E-46 |
| MS.gene054473 | MS.gene62813 | 0.825167 | 5.43E-54 | -1.69E-46 |
| MS.gene054719 | MS.gene62813 | 0.832683 | 8.22E-56 | -1.69E-46 |
| MS.gene054918 | MS.gene62813 | 0.801495 | 8.77E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene62813 | 0.812227 | 4.71E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene62813 | 0.81982 | 9.50E-53 | -1.69E-46 |
| MS.gene055217 | MS.gene62813 | 0.830533 | 2.78E-55 | -1.69E-46 |
| MS.gene055356 | MS.gene62813 | 0.811191 | 7.92E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene62813 | 0.831886 | 1.29E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene62813 | 0.806546 | 7.81E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene62813 | 0.809926 | 1.49E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene62813 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene62813 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene62813 | 0.800087 | 1.70E-48 | -1.69E-46 |
| MS.gene056514 | MS.gene62813 | 0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene62813 | 0.855559 | 5.82E-62 | -1.69E-46 |
| MS.gene056899 | MS.gene62813 | -0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene62813 | 0.812523 | 4.06E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene62813 | 0.813231 | 2.84E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene62813 | 0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene057476 | MS.gene62813 | 0.855271 | 7.06E-62 | -1.69E-46 |
| MS.gene057749 | MS.gene62813 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene057888 | MS.gene62813 | 0.8373 | 5.64E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene62813 | 0.80532 | 1.41E-49 | -1.69E-46 |
| MS.gene058220 | MS.gene62813 | 0.82278 | 1.97E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene62813 | 0.814248 | 1.70E-51 | -1.69E-46 |
| MS.gene058885 | MS.gene62813 | 0.822655 | 2.11E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene62813 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene059082 | MS.gene62813 | 0.803426 | 3.51E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene62813 | 0.856749 | 2.61E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene62813 | 0.817449 | 3.28E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene62813 | 0.805198 | 1.50E-49 | -1.69E-46 |
| MS.gene060038 | MS.gene62813 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene62813 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene62813 | -0.855552 | 5.84E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62813.t1 | MTR_4g102620 | 94.797 | 615 | 32 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1196 |
| MS.gene62813.t1 | MTR_1g101790 | 50.155 | 646 | 270 | 14 | 12 | 615 | 8 | 643 | 0.0 | 597 |
| MS.gene62813.t1 | MTR_1g101790 | 49.142 | 641 | 274 | 14 | 12 | 610 | 8 | 638 | 0.0 | 577 |
| MS.gene62813.t1 | MTR_6g089580 | 47.604 | 647 | 279 | 15 | 6 | 615 | 5 | 628 | 0.0 | 559 |
| MS.gene62813.t1 | MTR_6g464840 | 47.759 | 647 | 278 | 15 | 6 | 615 | 5 | 628 | 0.0 | 559 |
| MS.gene62813.t1 | MTR_8g079020 | 36.723 | 354 | 190 | 8 | 31 | 370 | 68 | 401 | 2.08e-71 | 248 |
| MS.gene62813.t1 | MTR_8g079020 | 40.000 | 205 | 115 | 5 | 398 | 598 | 725 | 925 | 2.01e-35 | 143 |
| MS.gene62813.t1 | MTR_8g079040 | 37.309 | 327 | 179 | 6 | 50 | 370 | 95 | 401 | 3.09e-71 | 247 |
| MS.gene62813.t1 | MTR_8g079040 | 38.725 | 204 | 119 | 4 | 398 | 598 | 721 | 921 | 3.76e-35 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62813.t1 | AT5G51920 | 44.209 | 613 | 276 | 12 | 1 | 604 | 1 | 556 | 3.05e-165 | 484 |
| MS.gene62813.t1 | AT4G22980 | 39.409 | 609 | 301 | 12 | 10 | 610 | 9 | 557 | 1.44e-135 | 407 |
| MS.gene62813.t1 | AT5G66950 | 40.367 | 327 | 170 | 6 | 50 | 370 | 93 | 400 | 6.07e-75 | 256 |
| MS.gene62813.t1 | AT5G66950 | 42.703 | 185 | 91 | 4 | 421 | 600 | 681 | 855 | 2.84e-35 | 142 |
| MS.gene62813.t1 | AT2G23520 | 38.532 | 327 | 176 | 6 | 50 | 370 | 95 | 402 | 1.75e-73 | 253 |
| MS.gene62813.t1 | AT2G23520 | 37.438 | 203 | 116 | 4 | 406 | 597 | 674 | 876 | 3.95e-30 | 127 |
| MS.gene62813.t1 | AT4G37100 | 36.612 | 366 | 196 | 9 | 63 | 421 | 110 | 446 | 4.42e-73 | 252 |
| MS.gene62813.t1 | AT4G37100 | 41.808 | 177 | 96 | 4 | 423 | 597 | 704 | 875 | 1.23e-33 | 137 |
| MS.gene62813.t1 | AT1G16540 | 21.503 | 572 | 308 | 23 | 75 | 589 | 4 | 491 | 4.66e-13 | 72.8 |
| MS.gene62813.t1 | AT1G16540 | 21.329 | 572 | 309 | 23 | 75 | 589 | 4 | 491 | 7.92e-13 | 72.0 |
| MS.gene62813.t1 | AT1G16540 | 21.329 | 572 | 309 | 23 | 75 | 589 | 4 | 491 | 8.69e-13 | 72.0 |
Find 91 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAAGATATTTGATTAAT+TGG | 0.155783 | 8.1:+21129524 | MS.gene62813:CDS |
| TCTCCATTCAATTCCTAAAT+TGG | 0.170825 | 8.1:-21128912 | None:intergenic |
| ATTTCTTCTCTTAAAGATTT+AGG | 0.172122 | 8.1:+21129220 | MS.gene62813:CDS |
| CCGTCAAACTCTGGATTATT+AGG | 0.217004 | 8.1:+21129328 | MS.gene62813:CDS |
| CCACTTTATTCAAAGGTTAC+TGG | 0.222847 | 8.1:+21128995 | MS.gene62813:CDS |
| CAAACTATGAAGATGTTTAT+AGG | 0.228960 | 8.1:+21129905 | MS.gene62813:CDS |
| GAATTCACATGGTCCAATTT+AGG | 0.230968 | 8.1:+21128899 | MS.gene62813:CDS |
| CCTAAAGTGTCTCTTTCTTT+TGG | 0.243729 | 8.1:-21129097 | None:intergenic |
| ATGAAGATGTTTATAGGTTA+TGG | 0.244282 | 8.1:+21129911 | MS.gene62813:CDS |
| AGGCCAATTCCCTCTCTTCT+TGG | 0.281938 | 8.1:-21129777 | None:intergenic |
| GAAGATGATAACATGTAAAA+AGG | 0.297027 | 8.1:+21128943 | MS.gene62813:CDS |
| TGAAGATGTTTATAGGTTAT+GGG | 0.323284 | 8.1:+21129912 | MS.gene62813:CDS |
| AGTGAGAAGCTCTGATCCTT+TGG | 0.342674 | 8.1:-21128798 | None:intergenic |
| AAAATATCAAGTTCTTTGAT+AGG | 0.352408 | 8.1:+21129752 | MS.gene62813:CDS |
| TGGAAAACAACCATTGAAAC+AGG | 0.356867 | 8.1:-21128213 | None:intergenic |
| ATGTCTTTGGCACAAGAAAA+TGG | 0.362723 | 8.1:+21129040 | MS.gene62813:CDS |
| CTCAAATGAGTATAGGATAT+TGG | 0.368511 | 8.1:+21129855 | MS.gene62813:CDS |
| AAAATGCAACCACCATGTTC+TGG | 0.372071 | 8.1:+21128173 | None:intergenic |
| TTTACTGACACTATTTGAAT+TGG | 0.373946 | 8.1:-21128276 | None:intergenic |
| ATCTTTGGTGAAAATCCATC+TGG | 0.378619 | 8.1:+21129166 | MS.gene62813:CDS |
| GCAAATGAAGTTGAAAAGTT+AGG | 0.395110 | 8.1:+21129811 | MS.gene62813:CDS |
| GTCTTAACCATCTCGTTCTC+AGG | 0.402171 | 8.1:-21129361 | None:intergenic |
| GGTGAAAATCCATCTGGGTT+TGG | 0.402954 | 8.1:+21129172 | MS.gene62813:CDS |
| AGTGTAATCAAAACATGTAT+TGG | 0.413697 | 8.1:-21128483 | None:intergenic |
| AATGAAAACTAAGGCGTAAT+CGG | 0.417763 | 8.1:-21128723 | None:intergenic |
| CCAGTAACCTTTGAATAAAG+TGG | 0.420797 | 8.1:-21128995 | None:intergenic |
| GTAAATGTGGGAGAGATTCA+TGG | 0.432348 | 8.1:-21128358 | None:intergenic |
| TTGAATTGGAAGTGTTATCA+TGG | 0.434250 | 8.1:-21128262 | None:intergenic |
| TCATCACAACCCTGTTTCAA+TGG | 0.435276 | 8.1:+21128203 | MS.gene62813:CDS |
| GGAGATGAATGATGAAAGAT+TGG | 0.441255 | 8.1:+21129441 | MS.gene62813:CDS |
| TGAGAAGTTGTGGAAAATTG+AGG | 0.444472 | 8.1:-21128413 | None:intergenic |
| AGAAGAGAGGGAATTGGCCT+TGG | 0.450623 | 8.1:+21129780 | MS.gene62813:CDS |
| AATGAACAAACCATAAAATC+AGG | 0.451423 | 8.1:-21129136 | None:intergenic |
| GGTCCAATTTAGGAATTGAA+TGG | 0.456840 | 8.1:+21128909 | MS.gene62813:CDS |
| TTCATTTGCTTTAGTTTCCA+AGG | 0.465141 | 8.1:-21129797 | None:intergenic |
| TTGATCTACTTGAGAAGTTG+TGG | 0.473181 | 8.1:-21128423 | None:intergenic |
| GAGAAGTTGTGGAAAATTGA+GGG | 0.473696 | 8.1:-21128412 | None:intergenic |
| TGGTTTGTGAAATGTGTGTT+GGG | 0.475864 | 8.1:-21128338 | None:intergenic |
| GAACCAAGAAGAGAGGGAAT+TGG | 0.478067 | 8.1:+21129774 | MS.gene62813:CDS |
| AGCTCCACAATTTCTGATGA+TGG | 0.487761 | 8.1:-21129409 | None:intergenic |
| CCTAATAATCCAGAGTTTGA+CGG | 0.487873 | 8.1:-21129328 | None:intergenic |
| CCAAAAGAAAGAGACACTTT+AGG | 0.489254 | 8.1:+21129097 | MS.gene62813:CDS |
| GAGTTCTCAGAGGCAAGAAA+TGG | 0.491382 | 8.1:-21128239 | None:intergenic |
| TGATCATAGCAATGAGGCAT+TGG | 0.493736 | 8.1:+21128826 | MS.gene62813:CDS |
| TTTCATTAATTAGAATCTAT+GGG | 0.496665 | 8.1:+21129596 | MS.gene62813:CDS |
| GAGAGTGCACCGTCAAACTC+TGG | 0.498403 | 8.1:+21129319 | MS.gene62813:CDS |
| CTCATTAGCAATGAAAACTA+AGG | 0.499860 | 8.1:-21128732 | None:intergenic |
| TGGCATTTAATATATTTGAC+TGG | 0.501389 | 8.1:+21129650 | MS.gene62813:CDS |
| TTTCCACAAAATCAGCATCA+AGG | 0.507755 | 8.1:-21129951 | None:intergenic |
| ATGGTTTGTGAAATGTGTGT+TGG | 0.508371 | 8.1:-21128339 | None:intergenic |
| TTTAATATATTTGACTGGAA+AGG | 0.511917 | 8.1:+21129655 | MS.gene62813:CDS |
| TTGTGCAGAAGTTAGCTGAT+AGG | 0.513041 | 8.1:+21129698 | MS.gene62813:CDS |
| GGAATAATATCTCTCTAAGC+AGG | 0.516126 | 8.1:+21129719 | MS.gene62813:CDS |
| GCTAACTTCTGCACAAGTGT+TGG | 0.523200 | 8.1:-21129691 | None:intergenic |
| AAAGTGGCTCAAATGAGTAT+AGG | 0.526368 | 8.1:+21129848 | MS.gene62813:CDS |
| TTAGGAAATGCTACAAGCAT+AGG | 0.531063 | 8.1:+21129238 | MS.gene62813:CDS |
| TCATTTCTATTTCAATCCAA+AGG | 0.532256 | 8.1:+21128782 | MS.gene62813:CDS |
| CTAGTTCTGATTCTTGTCCT+CGG | 0.537895 | 8.1:-21128652 | None:intergenic |
| TGAATTGGAAGTGTTATCAT+GGG | 0.542936 | 8.1:-21128261 | None:intergenic |
| ATCACCATCATCAGAAATTG+TGG | 0.551638 | 8.1:+21129405 | MS.gene62813:CDS |
| AATATATTAAATGCCACTGT+AGG | 0.551745 | 8.1:-21129643 | None:intergenic |
| AATTGTGGAGCTACAAGGCA+TGG | 0.566632 | 8.1:+21129420 | MS.gene62813:CDS |
| TCAGAAATTGTGGAGCTACA+AGG | 0.567806 | 8.1:+21129415 | MS.gene62813:CDS |
| GGCATGTCCAAGAAGAAAAG+TGG | 0.570932 | 8.1:+21129832 | MS.gene62813:CDS |
| TATACGAGTCTTGTAAATGT+GGG | 0.571430 | 8.1:-21128370 | None:intergenic |
| AAGACTTGAAGATGTGGCTG+AGG | 0.577054 | 8.1:-21128312 | None:intergenic |
| TTGATAGGAACCAAGAAGAG+AGG | 0.577292 | 8.1:+21129767 | MS.gene62813:CDS |
| CGCTTCTCCTGAGAACGAGA+TGG | 0.584335 | 8.1:+21129354 | MS.gene62813:CDS |
| TGATAGGAACCAAGAAGAGA+GGG | 0.586492 | 8.1:+21129768 | MS.gene62813:CDS |
| TTATACGAGTCTTGTAAATG+TGG | 0.592691 | 8.1:-21128371 | None:intergenic |
| AATAAACAACCAAACCCAGA+TGG | 0.596208 | 8.1:-21129181 | None:intergenic |
| TCAGAGGCAAGAAATGGAGA+TGG | 0.596800 | 8.1:-21128233 | None:intergenic |
| TCTTTGGTGAAAATCCATCT+GGG | 0.598214 | 8.1:+21129167 | MS.gene62813:CDS |
| GACTAAAGAAGAGCAAAATG+AGG | 0.605972 | 8.1:+21129381 | MS.gene62813:CDS |
| CTTTGGCACAAGAAAATGGT+TGG | 0.615852 | 8.1:+21129044 | MS.gene62813:CDS |
| ATTGATAGTTGCAAGAAGCA+AGG | 0.622439 | 8.1:+21128857 | MS.gene62813:CDS |
| GTGTGACATTGTGCAAATGT+AGG | 0.624324 | 8.1:-21129277 | None:intergenic |
| TTAGACCACGCAGACTCAGT+GGG | 0.643409 | 8.1:+21129481 | MS.gene62813:CDS |
| GATGATGTTCCTCCAGAACA+TGG | 0.646154 | 8.1:-21128185 | None:intergenic |
| TTCACATCGTGGACCTACAG+TGG | 0.650419 | 8.1:+21129630 | MS.gene62813:CDS |
| AGATTGGAAATTGAGTGTAG+AGG | 0.650792 | 8.1:+21129457 | MS.gene62813:CDS |
| ATTAGACCACGCAGACTCAG+TGG | 0.651262 | 8.1:+21129480 | MS.gene62813:CDS |
| ATGCAACCACCATGTTCTGG+AGG | 0.655118 | 8.1:+21128176 | MS.gene62813:CDS |
| CAAGTAGCGAGTAGACGACG+AGG | 0.680933 | 8.1:-21128564 | None:intergenic |
| TTAGTCCCACTGAGTCTGCG+TGG | 0.687077 | 8.1:-21129486 | None:intergenic |
| TGTGTATGATCATAGCAATG+AGG | 0.687969 | 8.1:+21128820 | MS.gene62813:CDS |
| GGGATAAAGACTTGAAGATG+TGG | 0.694505 | 8.1:-21128318 | None:intergenic |
| GGAAAACAACCATTGAAACA+GGG | 0.697784 | 8.1:-21128212 | None:intergenic |
| GTTATCATGGGAGTTCTCAG+AGG | 0.702910 | 8.1:-21128249 | None:intergenic |
| AAGTCACAGATACTCTACCG+AGG | 0.761105 | 8.1:+21128635 | MS.gene62813:CDS |
| GATGTTCCTCCAGAACATGG+TGG | 0.790301 | 8.1:-21128182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTAATTAGAATCTAT+GGG | + | chr8.1:21129596-21129615 | MS.gene62813:CDS | 15.0% |
| !!! | TTTTCATTAATTAGAATCTA+TGG | + | chr8.1:21129595-21129614 | MS.gene62813:CDS | 15.0% |
| !! | AAAATATCAAGTTCTTTGAT+AGG | + | chr8.1:21129752-21129771 | MS.gene62813:CDS | 20.0% |
| !! | ATTTCTTCTCTTAAAGATTT+AGG | + | chr8.1:21129220-21129239 | MS.gene62813:CDS | 20.0% |
| !! | GAACAAGATATTTGATTAAT+TGG | + | chr8.1:21129524-21129543 | MS.gene62813:CDS | 20.0% |
| !! | TTTAATATATTTGACTGGAA+AGG | + | chr8.1:21129655-21129674 | MS.gene62813:CDS | 20.0% |
| !!! | ATGAATAAGAACATGATTTT+TGG | - | chr8.1:21128541-21128560 | None:intergenic | 20.0% |
| !!! | TATGTTTAAACCTGATTTTA+TGG | + | chr8.1:21129126-21129145 | MS.gene62813:CDS | 20.0% |
| !!! | TGTTCATTTTACAAAATCTT+TGG | + | chr8.1:21129151-21129170 | MS.gene62813:CDS | 20.0% |
| ! | AATATATTAAATGCCACTGT+AGG | - | chr8.1:21129646-21129665 | None:intergenic | 25.0% |
| ! | AATGAACAAACCATAAAATC+AGG | - | chr8.1:21129139-21129158 | None:intergenic | 25.0% |
| ! | AGTGTAATCAAAACATGTAT+TGG | - | chr8.1:21128486-21128505 | None:intergenic | 25.0% |
| ! | ATGAAGATGTTTATAGGTTA+TGG | + | chr8.1:21129911-21129930 | MS.gene62813:CDS | 25.0% |
| ! | CAAACTATGAAGATGTTTAT+AGG | + | chr8.1:21129905-21129924 | MS.gene62813:CDS | 25.0% |
| ! | GAAGATGATAACATGTAAAA+AGG | + | chr8.1:21128943-21128962 | MS.gene62813:CDS | 25.0% |
| ! | GACATCCAAAAATAAGAATA+TGG | - | chr8.1:21129025-21129044 | None:intergenic | 25.0% |
| ! | TCATTTCTATTTCAATCCAA+AGG | + | chr8.1:21128782-21128801 | MS.gene62813:CDS | 25.0% |
| ! | TGAAGATGTTTATAGGTTAT+GGG | + | chr8.1:21129912-21129931 | MS.gene62813:CDS | 25.0% |
| ! | TGGCATTTAATATATTTGAC+TGG | + | chr8.1:21129650-21129669 | MS.gene62813:CDS | 25.0% |
| ! | TTTACTGACACTATTTGAAT+TGG | - | chr8.1:21128279-21128298 | None:intergenic | 25.0% |
| !! | GAAAATCTATTTTCATCATG+TGG | - | chr8.1:21129580-21129599 | None:intergenic | 25.0% |
| !! | TGTTTTTCCACTTTATTCAA+AGG | + | chr8.1:21128988-21129007 | MS.gene62813:CDS | 25.0% |
| !!! | AATACATGTTTTGATTACAC+TGG | + | chr8.1:21128485-21128504 | MS.gene62813:CDS | 25.0% |
| !!! | GAACTTGATATTTTTCAAAC+AGG | - | chr8.1:21129746-21129765 | None:intergenic | 25.0% |
| !!! | GATCACCATATTCTTATTTT+TGG | + | chr8.1:21129017-21129036 | MS.gene62813:CDS | 25.0% |
| !!! | TTCTTATTTTTGGATGTCTT+TGG | + | chr8.1:21129027-21129046 | MS.gene62813:CDS | 25.0% |
| AATGAAAACTAAGGCGTAAT+CGG | - | chr8.1:21128726-21128745 | None:intergenic | 30.0% | |
| CCAAAAATAAATTCACATCG+TGG | + | chr8.1:21129619-21129638 | MS.gene62813:CDS | 30.0% | |
| CTCAAATGAGTATAGGATAT+TGG | + | chr8.1:21129855-21129874 | MS.gene62813:CDS | 30.0% | |
| CTCATTAGCAATGAAAACTA+AGG | - | chr8.1:21128735-21128754 | None:intergenic | 30.0% | |
| GCAAATGAAGTTGAAAAGTT+AGG | + | chr8.1:21129811-21129830 | MS.gene62813:CDS | 30.0% | |
| TCTCCATTCAATTCCTAAAT+TGG | - | chr8.1:21128915-21128934 | None:intergenic | 30.0% | |
| TGTAAAAAGGAGAAGAGAAA+AGG | + | chr8.1:21128956-21128975 | MS.gene62813:CDS | 30.0% | |
| ! | ATTTTGTGGAAAAAGAGAGA+TGG | + | chr8.1:21129962-21129981 | MS.gene62813:CDS | 30.0% |
| ! | TATACGAGTCTTGTAAATGT+GGG | - | chr8.1:21128373-21128392 | None:intergenic | 30.0% |
| ! | TTATACGAGTCTTGTAAATG+TGG | - | chr8.1:21128374-21128393 | None:intergenic | 30.0% |
| ! | TTCATTTGCTTTAGTTTCCA+AGG | - | chr8.1:21129800-21129819 | None:intergenic | 30.0% |
| ! | TTTTATCAGCAGAATTCACA+TGG | + | chr8.1:21128888-21128907 | MS.gene62813:CDS | 30.0% |
| !! | CCACGATGTGAATTTATTTT+TGG | - | chr8.1:21129622-21129641 | None:intergenic | 30.0% |
| !! | CTTAGTTTTCATTGCTAATG+AGG | + | chr8.1:21128733-21128752 | MS.gene62813:CDS | 30.0% |
| !! | TGAATTGGAAGTGTTATCAT+GGG | - | chr8.1:21128264-21128283 | None:intergenic | 30.0% |
| !! | TTGAATTGGAAGTGTTATCA+TGG | - | chr8.1:21128265-21128284 | None:intergenic | 30.0% |
| !!! | TGTTTTGATTACACTGGTTA+TGG | + | chr8.1:21128491-21128510 | MS.gene62813:CDS | 30.0% |
| AAAGTGGCTCAAATGAGTAT+AGG | + | chr8.1:21129848-21129867 | MS.gene62813:CDS | 35.0% | |
| AATAAACAACCAAACCCAGA+TGG | - | chr8.1:21129184-21129203 | None:intergenic | 35.0% | |
| AGATTGGAAATTGAGTGTAG+AGG | + | chr8.1:21129457-21129476 | MS.gene62813:CDS | 35.0% | |
| ATCACCATCATCAGAAATTG+TGG | + | chr8.1:21129405-21129424 | MS.gene62813:CDS | 35.0% | |
| ATCTTTGGTGAAAATCCATC+TGG | + | chr8.1:21129166-21129185 | MS.gene62813:CDS | 35.0% | |
| ATGTCTTTGGCACAAGAAAA+TGG | + | chr8.1:21129040-21129059 | MS.gene62813:CDS | 35.0% | |
| CCAAAAGAAAGAGACACTTT+AGG | + | chr8.1:21129097-21129116 | MS.gene62813:CDS | 35.0% | |
| CCACTTTATTCAAAGGTTAC+TGG | + | chr8.1:21128995-21129014 | MS.gene62813:CDS | 35.0% | |
| CCAGTAACCTTTGAATAAAG+TGG | - | chr8.1:21128998-21129017 | None:intergenic | 35.0% | |
| CCTAATAATCCAGAGTTTGA+CGG | - | chr8.1:21129331-21129350 | None:intergenic | 35.0% | |
| GAATTCACATGGTCCAATTT+AGG | + | chr8.1:21128899-21128918 | MS.gene62813:CDS | 35.0% | |
| GACTAAAGAAGAGCAAAATG+AGG | + | chr8.1:21129381-21129400 | MS.gene62813:CDS | 35.0% | |
| GAGAAGTTGTGGAAAATTGA+GGG | - | chr8.1:21128415-21128434 | None:intergenic | 35.0% | |
| GGAAAACAACCATTGAAACA+GGG | - | chr8.1:21128215-21128234 | None:intergenic | 35.0% | |
| GGAATAATATCTCTCTAAGC+AGG | + | chr8.1:21129719-21129738 | MS.gene62813:CDS | 35.0% | |
| GGAGATGAATGATGAAAGAT+TGG | + | chr8.1:21129441-21129460 | MS.gene62813:CDS | 35.0% | |
| GGTCCAATTTAGGAATTGAA+TGG | + | chr8.1:21128909-21128928 | MS.gene62813:CDS | 35.0% | |
| TCTTTGGTGAAAATCCATCT+GGG | + | chr8.1:21129167-21129186 | MS.gene62813:CDS | 35.0% | |
| TGAGAAGTTGTGGAAAATTG+AGG | - | chr8.1:21128416-21128435 | None:intergenic | 35.0% | |
| TGGAAAACAACCATTGAAAC+AGG | - | chr8.1:21128216-21128235 | None:intergenic | 35.0% | |
| TGTGTATGATCATAGCAATG+AGG | + | chr8.1:21128820-21128839 | MS.gene62813:CDS | 35.0% | |
| TTAGGAAATGCTACAAGCAT+AGG | + | chr8.1:21129238-21129257 | MS.gene62813:CDS | 35.0% | |
| TTGATCTACTTGAGAAGTTG+TGG | - | chr8.1:21128426-21128445 | None:intergenic | 35.0% | |
| TTTCCACAAAATCAGCATCA+AGG | - | chr8.1:21129954-21129973 | None:intergenic | 35.0% | |
| ! | ATGGTTTGTGAAATGTGTGT+TGG | - | chr8.1:21128342-21128361 | None:intergenic | 35.0% |
| ! | ATTGATAGTTGCAAGAAGCA+AGG | + | chr8.1:21128857-21128876 | MS.gene62813:CDS | 35.0% |
| ! | TGGTTTGTGAAATGTGTGTT+GGG | - | chr8.1:21128341-21128360 | None:intergenic | 35.0% |
| !! | CCTAAAGTGTCTCTTTCTTT+TGG | - | chr8.1:21129100-21129119 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGACTGCAACAT+TGG | + | chr8.1:21129873-21129892 | MS.gene62813:CDS | 35.0% |
| !!! | ATTTGAGCCACTTTTCTTCT+TGG | - | chr8.1:21129842-21129861 | None:intergenic | 35.0% |
| !!! | TTGGTTTTGACTGCAACATT+GGG | + | chr8.1:21129874-21129893 | MS.gene62813:CDS | 35.0% |
| AGCTCCACAATTTCTGATGA+TGG | - | chr8.1:21129412-21129431 | None:intergenic | 40.0% | |
| CCGTCAAACTCTGGATTATT+AGG | + | chr8.1:21129328-21129347 | MS.gene62813:CDS | 40.0% | |
| CTTTGGCACAAGAAAATGGT+TGG | + | chr8.1:21129044-21129063 | MS.gene62813:CDS | 40.0% | |
| GGGATAAAGACTTGAAGATG+TGG | - | chr8.1:21128321-21128340 | None:intergenic | 40.0% | |
| GTAAATGTGGGAGAGATTCA+TGG | - | chr8.1:21128361-21128380 | None:intergenic | 40.0% | |
| GTGTGACATTGTGCAAATGT+AGG | - | chr8.1:21129280-21129299 | None:intergenic | 40.0% | |
| TCAGAAATTGTGGAGCTACA+AGG | + | chr8.1:21129415-21129434 | MS.gene62813:CDS | 40.0% | |
| TCATCACAACCCTGTTTCAA+TGG | + | chr8.1:21128203-21128222 | MS.gene62813:CDS | 40.0% | |
| TGATAGGAACCAAGAAGAGA+GGG | + | chr8.1:21129768-21129787 | MS.gene62813:CDS | 40.0% | |
| TGATCATAGCAATGAGGCAT+TGG | + | chr8.1:21128826-21128845 | MS.gene62813:CDS | 40.0% | |
| TTGATAGGAACCAAGAAGAG+AGG | + | chr8.1:21129767-21129786 | MS.gene62813:CDS | 40.0% | |
| TTGTGCAGAAGTTAGCTGAT+AGG | + | chr8.1:21129698-21129717 | MS.gene62813:CDS | 40.0% | |
| !! | CTAGTTCTGATTCTTGTCCT+CGG | - | chr8.1:21128655-21128674 | None:intergenic | 40.0% |
| !! | GGTTATGGGCTTTTGTTTCT+AGG | + | chr8.1:21129926-21129945 | MS.gene62813:CDS | 40.0% |
| !!! | GTTCCTTGATGCTGATTTTG+TGG | + | chr8.1:21129948-21129967 | MS.gene62813:CDS | 40.0% |
| AAGACTTGAAGATGTGGCTG+AGG | - | chr8.1:21128315-21128334 | None:intergenic | 45.0% | |
| AAGTCACAGATACTCTACCG+AGG | + | chr8.1:21128635-21128654 | MS.gene62813:CDS | 45.0% | |
| AATTGTGGAGCTACAAGGCA+TGG | + | chr8.1:21129420-21129439 | MS.gene62813:CDS | 45.0% | |
| GAACCAAGAAGAGAGGGAAT+TGG | + | chr8.1:21129774-21129793 | MS.gene62813:CDS | 45.0% | |
| GAGTTCTCAGAGGCAAGAAA+TGG | - | chr8.1:21128242-21128261 | None:intergenic | 45.0% | |
| GATGATGTTCCTCCAGAACA+TGG | - | chr8.1:21128188-21128207 | None:intergenic | 45.0% | |
| GCTAACTTCTGCACAAGTGT+TGG | - | chr8.1:21129694-21129713 | None:intergenic | 45.0% | |
| GGCATGTCCAAGAAGAAAAG+TGG | + | chr8.1:21129832-21129851 | MS.gene62813:CDS | 45.0% | |
| GGTGAAAATCCATCTGGGTT+TGG | + | chr8.1:21129172-21129191 | MS.gene62813:CDS | 45.0% | |
| GTCTTAACCATCTCGTTCTC+AGG | - | chr8.1:21129364-21129383 | None:intergenic | 45.0% | |
| GTTATCATGGGAGTTCTCAG+AGG | - | chr8.1:21128252-21128271 | None:intergenic | 45.0% | |
| TCAGAGGCAAGAAATGGAGA+TGG | - | chr8.1:21128236-21128255 | None:intergenic | 45.0% | |
| ! | AGTGAGAAGCTCTGATCCTT+TGG | - | chr8.1:21128801-21128820 | None:intergenic | 45.0% |
| AGGCCAATTCCCTCTCTTCT+TGG | - | chr8.1:21129780-21129799 | None:intergenic | 50.0% | |
| ATGCAACCACCATGTTCTGG+AGG | + | chr8.1:21128176-21128195 | MS.gene62813:CDS | 50.0% | |
| ATTAGACCACGCAGACTCAG+TGG | + | chr8.1:21129480-21129499 | MS.gene62813:CDS | 50.0% | |
| GATGTTCCTCCAGAACATGG+TGG | - | chr8.1:21128185-21128204 | None:intergenic | 50.0% | |
| TTAGACCACGCAGACTCAGT+GGG | + | chr8.1:21129481-21129500 | MS.gene62813:CDS | 50.0% | |
| TTCACATCGTGGACCTACAG+TGG | + | chr8.1:21129630-21129649 | MS.gene62813:CDS | 50.0% | |
| ! | AGAAGAGAGGGAATTGGCCT+TGG | + | chr8.1:21129780-21129799 | MS.gene62813:CDS | 50.0% |
| CAAGTAGCGAGTAGACGACG+AGG | - | chr8.1:21128567-21128586 | None:intergenic | 55.0% | |
| CGCTTCTCCTGAGAACGAGA+TGG | + | chr8.1:21129354-21129373 | MS.gene62813:CDS | 55.0% | |
| TTAGTCCCACTGAGTCTGCG+TGG | - | chr8.1:21129489-21129508 | None:intergenic | 55.0% | |
| ! | GAGAGTGCACCGTCAAACTC+TGG | + | chr8.1:21129319-21129338 | MS.gene62813:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21128176 | 21130023 | 21128176 | ID=MS.gene62813 |
| chr8.1 | mRNA | 21128176 | 21130023 | 21128176 | ID=MS.gene62813.t1;Parent=MS.gene62813 |
| chr8.1 | exon | 21128176 | 21130023 | 21128176 | ID=MS.gene62813.t1.exon1;Parent=MS.gene62813.t1 |
| chr8.1 | CDS | 21128176 | 21130023 | 21128176 | ID=cds.MS.gene62813.t1;Parent=MS.gene62813.t1 |
| Gene Sequence |
| Protein sequence |
