Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66922.t1 | XP_013467022.1 | 95.1 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 7.90E-170 | 606.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66922.t1 | Q9M7I7 | 61.2 | 309 | 111 | 3 | 3 | 302 | 4 | 312 | 1.9e-111 | 403.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66922.t1 | A0A072VGW2 | 95.1 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 5.7e-170 | 606.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene66922 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene66922 | 0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene66922 | -0.825782 | 3.89E-54 | -1.69E-46 |
| MS.gene050315 | MS.gene66922 | 0.842953 | 1.89E-58 | -1.69E-46 |
| MS.gene050404 | MS.gene66922 | 0.802089 | 6.62E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene66922 | 0.828655 | 7.97E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene66922 | -0.839108 | 1.93E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene66922 | 0.80407 | 2.58E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene66922 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene66922 | 0.85237 | 4.83E-61 | -1.69E-46 |
| MS.gene051208 | MS.gene66922 | 0.85591 | 4.59E-62 | -1.69E-46 |
| MS.gene051240 | MS.gene66922 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene66922 | 0.84595 | 2.95E-59 | -1.69E-46 |
| MS.gene051244 | MS.gene66922 | 0.836333 | 9.95E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene66922 | 0.852796 | 3.65E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene66922 | 0.85126 | 9.97E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene66922 | -0.846172 | 2.57E-59 | -1.69E-46 |
| MS.gene052134 | MS.gene66922 | 0.876593 | 1.23E-68 | -1.69E-46 |
| MS.gene052135 | MS.gene66922 | 0.865893 | 4.24E-65 | -1.69E-46 |
| MS.gene052340 | MS.gene66922 | 0.815379 | 9.53E-52 | -1.69E-46 |
| MS.gene052469 | MS.gene66922 | 0.837672 | 4.53E-57 | -1.69E-46 |
| MS.gene052589 | MS.gene66922 | 0.853136 | 2.92E-61 | -1.69E-46 |
| MS.gene052590 | MS.gene66922 | 0.846653 | 1.90E-59 | -1.69E-46 |
| MS.gene052758 | MS.gene66922 | 0.806819 | 6.84E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene66922 | 0.999176 | 3.29E-294 | -1.69E-46 |
| MS.gene053971 | MS.gene66922 | 0.831717 | 1.43E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene66922 | 0.873302 | 1.63E-67 | -1.69E-46 |
| MS.gene054110 | MS.gene66922 | 0.879451 | 1.23E-69 | -1.69E-46 |
| MS.gene05413 | MS.gene66922 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene66922 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene66922 | 0.812492 | 4.12E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene66922 | 0.853186 | 2.82E-61 | -1.69E-46 |
| MS.gene055217 | MS.gene66922 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene66922 | 0.817254 | 3.63E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene66922 | 0.87001 | 2.02E-66 | -1.69E-46 |
| MS.gene055539 | MS.gene66922 | 0.826547 | 2.56E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene66922 | 0.884279 | 2.20E-71 | -1.69E-46 |
| MS.gene05556 | MS.gene66922 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene056305 | MS.gene66922 | 0.842992 | 1.84E-58 | -1.69E-46 |
| MS.gene056351 | MS.gene66922 | 0.831397 | 1.71E-55 | -1.69E-46 |
| MS.gene056442 | MS.gene66922 | 0.817968 | 2.50E-52 | -1.69E-46 |
| MS.gene056451 | MS.gene66922 | 0.817221 | 3.69E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene66922 | 0.921756 | 2.38E-88 | -1.69E-46 |
| MS.gene056664 | MS.gene66922 | 0.8439 | 1.05E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene66922 | 0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene66922 | -0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene66922 | 0.817308 | 3.53E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene66922 | 0.839976 | 1.15E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene66922 | 0.840785 | 7.06E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene66922 | 0.860775 | 1.63E-63 | -1.69E-46 |
| MS.gene058444 | MS.gene66922 | 0.82029 | 7.42E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene66922 | 0.912157 | 2.69E-83 | -1.69E-46 |
| MS.gene059011 | MS.gene66922 | 0.849698 | 2.74E-60 | -1.69E-46 |
| MS.gene059247 | MS.gene66922 | 0.820815 | 5.62E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene66922 | 0.829813 | 4.17E-55 | -1.69E-46 |
| MS.gene059512 | MS.gene66922 | 0.857036 | 2.15E-62 | -1.69E-46 |
| MS.gene059683 | MS.gene66922 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene060407 | MS.gene66922 | 0.850871 | 1.28E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene66922 | -0.804798 | 1.82E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene66922 | 0.81355 | 2.42E-51 | -1.69E-46 |
| MS.gene061231 | MS.gene66922 | 0.802947 | 4.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66922.t1 | MTR_1g041390 | 95.114 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 0.0 | 575 |
| MS.gene66922.t1 | MTR_1g041385 | 80.782 | 307 | 58 | 1 | 1 | 307 | 1 | 306 | 3.25e-176 | 489 |
| MS.gene66922.t1 | MTR_6g082500 | 45.631 | 309 | 149 | 6 | 6 | 306 | 15 | 312 | 3.16e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66922.t1 | AT5G43860 | 60.518 | 309 | 113 | 3 | 3 | 302 | 4 | 312 | 1.01e-137 | 392 |
| MS.gene66922.t1 | AT1G19670 | 44.863 | 292 | 155 | 5 | 8 | 296 | 18 | 306 | 5.49e-82 | 251 |
Find 58 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTAACTTGTCAAAATT+TGG | 0.166079 | 1.3:-24559822 | None:intergenic |
| GTTGCAATCAAGAGAGATTT+TGG | 0.211333 | 1.3:-24558302 | None:intergenic |
| GATATGGCAACATTGGTTAT+TGG | 0.252852 | 1.3:+24560020 | MS.gene66922:CDS |
| GCAACATTGGTTATTGGTTC+TGG | 0.258641 | 1.3:+24560026 | MS.gene66922:CDS |
| AACTGGATCAACTCCTATTA+TGG | 0.288193 | 1.3:-24559928 | None:intergenic |
| TTTCCTCTCTTAGTTGTATA+CGG | 0.291769 | 1.3:+24559701 | MS.gene66922:intron |
| CTGTAGCTGCAATAACAAAT+TGG | 0.301199 | 1.3:+24559757 | MS.gene66922:CDS |
| TTGGTTATTGGTTCTGGTTT+AGG | 0.306609 | 1.3:+24560032 | MS.gene66922:CDS |
| TCATTCATTTGATTACGATA+TGG | 0.311804 | 1.3:+24560004 | MS.gene66922:CDS |
| CCTTTATCCATTCCATCAAC+TGG | 0.334016 | 1.3:-24559945 | None:intergenic |
| GCGAATGTGAGAAACCTTCT+TGG | 0.345248 | 1.3:+24560123 | MS.gene66922:CDS |
| GTTTCCTCCTTGTGCACCTA+AGG | 0.368936 | 1.3:+24560076 | MS.gene66922:CDS |
| GATATTTGTTGGAGGAGTTA+TGG | 0.375257 | 1.3:+24560262 | MS.gene66922:CDS |
| TGTTCACGTACACAACAATA+TGG | 0.376449 | 1.3:+24558190 | MS.gene66922:CDS |
| TAAATCTCTTCAGTTATATC+AGG | 0.384754 | 1.3:-24559732 | None:intergenic |
| GATGATACTAAAGGAGTTAG+AGG | 0.384847 | 1.3:+24560188 | MS.gene66922:CDS |
| CCAGTTGATGGAATGGATAA+AGG | 0.394237 | 1.3:+24559945 | MS.gene66922:CDS |
| ATCAACCTTTAGTAGCTTAG+TGG | 0.402980 | 1.3:-24558164 | None:intergenic |
| ATTGAGCATGTTGCTTCTCA+TGG | 0.404351 | 1.3:+24558404 | MS.gene66922:CDS |
| CTTCATTGTCATTGCTCCTC+AGG | 0.404622 | 1.3:+24558427 | MS.gene66922:CDS |
| CCTCCAACAAATATCCTCAT+AGG | 0.439805 | 1.3:-24560254 | None:intergenic |
| GGGAAATCTCCACCTTCAAT+AGG | 0.443716 | 1.3:-24558326 | None:intergenic |
| AGTTATTGTTTATGTAAGAA+TGG | 0.447160 | 1.3:+24560218 | MS.gene66922:CDS |
| TTGATTGCAACTCCTATTGA+AGG | 0.448310 | 1.3:+24558314 | MS.gene66922:CDS |
| TGAGGAACATAGGTGAGAAT+TGG | 0.464534 | 1.3:-24559984 | None:intergenic |
| ATAGGAGTTGATCCAGTTGA+TGG | 0.466790 | 1.3:+24559933 | MS.gene66922:CDS |
| TTTCCTCCTTGTGCACCTAA+GGG | 0.470069 | 1.3:+24560077 | MS.gene66922:CDS |
| TTATGGTCATGTTGATATGT+TGG | 0.487257 | 1.3:+24560163 | MS.gene66922:CDS |
| AAACCTATGAGGATATTTGT+TGG | 0.491421 | 1.3:+24560251 | MS.gene66922:CDS |
| TCTTAGTTGTATACGGTGGC+TGG | 0.500060 | 1.3:+24559708 | MS.gene66922:intron |
| ATAACAAATTGGCTATCTAA+AGG | 0.506043 | 1.3:+24559768 | MS.gene66922:CDS |
| TATGTAAGAATGGTGAATCA+AGG | 0.508849 | 1.3:+24560228 | MS.gene66922:CDS |
| TTTGACAAGTTAGCACTTGG+TGG | 0.520012 | 1.3:+24559828 | MS.gene66922:CDS |
| TGATTACGATATGGCAACAT+TGG | 0.527494 | 1.3:+24560013 | MS.gene66922:CDS |
| TCCTCATGATTGACACCCTT+AGG | 0.545231 | 1.3:-24560092 | None:intergenic |
| AGTTGATCCAGTTGATGGAA+TGG | 0.545451 | 1.3:+24559938 | MS.gene66922:CDS |
| TTCTTGAAAGCTTATTTGCA+TGG | 0.546906 | 1.3:+24560290 | MS.gene66922:CDS |
| CTATACCACTAAGCTACTAA+AGG | 0.552949 | 1.3:+24558159 | MS.gene66922:CDS |
| TAATCAAATTTCATCTCAAG+AGG | 0.556121 | 1.3:-24560359 | None:intergenic |
| ATATCGTAATCAAATGAATG+AGG | 0.572490 | 1.3:-24560002 | None:intergenic |
| ATCAAATGAATGAGGAACAT+AGG | 0.578505 | 1.3:-24559994 | None:intergenic |
| CCTATGAGGATATTTGTTGG+AGG | 0.580420 | 1.3:+24560254 | MS.gene66922:CDS |
| GTGAATCAAGGAAACCTATG+AGG | 0.584276 | 1.3:+24560240 | MS.gene66922:CDS |
| GGAACATAGGTGAGAATTGG+TGG | 0.587964 | 1.3:-24559981 | None:intergenic |
| GTGCACAAGGAGGAAACAAA+GGG | 0.590331 | 1.3:-24560070 | None:intergenic |
| TTAGCCACAAAATACCAAGA+AGG | 0.593683 | 1.3:-24560137 | None:intergenic |
| TTGGTGGTCATAGTCGCGGC+GGG | 0.594950 | 1.3:+24559844 | MS.gene66922:CDS |
| ATTGCAACTCCTATTGAAGG+TGG | 0.601589 | 1.3:+24558317 | MS.gene66922:CDS |
| GGTGCACAAGGAGGAAACAA+AGG | 0.615241 | 1.3:-24560071 | None:intergenic |
| ATGATACTAAAGGAGTTAGA+GGG | 0.619958 | 1.3:+24560189 | MS.gene66922:CDS |
| TTATTTGCATGGTGATAATG+TGG | 0.630656 | 1.3:+24560301 | MS.gene66922:CDS |
| CCTCTCTTAGTTGTATACGG+TGG | 0.634151 | 1.3:+24559704 | MS.gene66922:intron |
| ACCTAAGGGTGTCAATCATG+AGG | 0.653818 | 1.3:+24560091 | MS.gene66922:CDS |
| CTTGGTGGTCATAGTCGCGG+CGG | 0.660141 | 1.3:+24559843 | MS.gene66922:CDS |
| GCACTTGGTGGTCATAGTCG+CGG | 0.661508 | 1.3:+24559840 | MS.gene66922:CDS |
| TTGACACCCTTAGGTGCACA+AGG | 0.662635 | 1.3:-24560083 | None:intergenic |
| ATGTTGGATGATGATACTAA+AGG | 0.689048 | 1.3:+24560179 | MS.gene66922:CDS |
| ACACCCTTAGGTGCACAAGG+AGG | 0.758140 | 1.3:-24560080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAATCATA+AGG | - | chr1.3:24559184-24559203 | None:intergenic | 10.0% |
| !! | AATTTCTTATAAAATCATAA+GGG | - | chr1.3:24559183-24559202 | None:intergenic | 10.0% |
| !! | ATATTATAACATAAGAAAAT+TGG | + | chr1.3:24559067-24559086 | MS.gene66922:intron | 10.0% |
| !! | TAATCATTAAAAACATTATT+AGG | + | chr1.3:24558592-24558611 | MS.gene66922:intron | 10.0% |
| !! | AACAATAAAATGTTTATTTG+GGG | - | chr1.3:24559021-24559040 | None:intergenic | 15.0% |
| !! | ACAACAATAAAATGTTTATT+TGG | - | chr1.3:24559023-24559042 | None:intergenic | 15.0% |
| !! | ATTTCTTATAAAATCATAAG+GGG | - | chr1.3:24559182-24559201 | None:intergenic | 15.0% |
| !! | CAACAATAAAATGTTTATTT+GGG | - | chr1.3:24559022-24559041 | None:intergenic | 15.0% |
| !! | TACATATTAAAATGTCAAAT+AGG | - | chr1.3:24558459-24558478 | None:intergenic | 15.0% |
| !!! | TTTTAATGATTATGTGAAAT+TGG | - | chr1.3:24558584-24558603 | None:intergenic | 15.0% |
| !! | AAATTGAAATTTGAAGATGT+TGG | - | chr1.3:24559113-24559132 | None:intergenic | 20.0% |
| !! | ACAAGAATTGAAATGAAATA+TGG | - | chr1.3:24559267-24559286 | None:intergenic | 20.0% |
| !! | ACAATAAAATGTTTATTTGG+GGG | - | chr1.3:24559020-24559039 | None:intergenic | 20.0% |
| !! | ACATTATTAGGAGAATATAA+TGG | + | chr1.3:24558604-24558623 | MS.gene66922:intron | 20.0% |
| !! | AGTTATTGTTTATGTAAGAA+TGG | + | chr1.3:24560218-24560237 | MS.gene66922:CDS | 20.0% |
| !! | CACTTTAAATACACAAAATA+AGG | + | chr1.3:24559365-24559384 | MS.gene66922:intron | 20.0% |
| !! | TAGAAAATTGTAGAATCATA+GGG | + | chr1.3:24558711-24558730 | MS.gene66922:intron | 20.0% |
| !!! | TAAATTGTGAGTTTTTTAAG+TGG | - | chr1.3:24559301-24559320 | None:intergenic | 20.0% |
| !!! | TCAAAATTTGGTTTTATGTT+TGG | - | chr1.3:24559813-24559832 | None:intergenic | 20.0% |
| !!! | TCCATTAAGTCTTATAAATA+AGG | - | chr1.3:24558858-24558877 | None:intergenic | 20.0% |
| !!! | TCCTTATTTATAAGACTTAA+TGG | + | chr1.3:24558854-24558873 | MS.gene66922:intron | 20.0% |
| !!! | TTTCTTTTTTGTTTTTTGTC+AGG | - | chr1.3:24559560-24559579 | None:intergenic | 20.0% |
| ! | AATTCGTTGTAGTGAAAAAA+TGG | - | chr1.3:24559155-24559174 | None:intergenic | 25.0% |
| ! | ATAACAAATTGGCTATCTAA+AGG | + | chr1.3:24559768-24559787 | MS.gene66922:CDS | 25.0% |
| ! | ATATCGTAATCAAATGAATG+AGG | - | chr1.3:24560005-24560024 | None:intergenic | 25.0% |
| ! | ATCTTAGAAAACATGTCTAA+TGG | + | chr1.3:24559396-24559415 | MS.gene66922:intron | 25.0% |
| ! | CAATAAAATGTTTATTTGGG+GGG | - | chr1.3:24559019-24559038 | None:intergenic | 25.0% |
| ! | GTAGAAAATTGTAGAATCAT+AGG | + | chr1.3:24558710-24558729 | MS.gene66922:intron | 25.0% |
| ! | TAAATCTCTTCAGTTATATC+AGG | - | chr1.3:24559735-24559754 | None:intergenic | 25.0% |
| ! | TAATCAAATTTCATCTCAAG+AGG | - | chr1.3:24560362-24560381 | None:intergenic | 25.0% |
| ! | TCATTCATTTGATTACGATA+TGG | + | chr1.3:24560004-24560023 | MS.gene66922:CDS | 25.0% |
| ! | TGTTGTTAGAAAATTTGAGT+TGG | + | chr1.3:24559037-24559056 | MS.gene66922:intron | 25.0% |
| ! | TTATAAGAAATTTCAGTGCT+AGG | + | chr1.3:24559191-24559210 | MS.gene66922:intron | 25.0% |
| !! | CTAAAATTTTCAGCCATAAT+AGG | + | chr1.3:24559915-24559934 | MS.gene66922:CDS | 25.0% |
| !! | TAAGATTCTTAGGATTTTGT+TGG | - | chr1.3:24558938-24558957 | None:intergenic | 25.0% |
| !!! | AAATTTGGTTTTATGTTTGG+TGG | - | chr1.3:24559810-24559829 | None:intergenic | 25.0% |
| !!! | GTTAGTAATGTTTTTGAAAC+TGG | + | chr1.3:24558133-24558152 | MS.gene66922:CDS | 25.0% |
| !!! | TAGGATTAGTTAATAGTTAG+TGG | - | chr1.3:24558910-24558929 | None:intergenic | 25.0% |
| !!! | TAGGATTTTGTTGGTTAATT+AGG | - | chr1.3:24558929-24558948 | None:intergenic | 25.0% |
| AAAAAATGGTGCAATGTCTA+TGG | - | chr1.3:24559141-24559160 | None:intergenic | 30.0% | |
| AAACCTATGAGGATATTTGT+TGG | + | chr1.3:24560251-24560270 | MS.gene66922:CDS | 30.0% | |
| ATCAAATGAATGAGGAACAT+AGG | - | chr1.3:24559997-24560016 | None:intergenic | 30.0% | |
| ATCCTAAGAATCTTAACACA+TGG | + | chr1.3:24558943-24558962 | MS.gene66922:intron | 30.0% | |
| ATGATACTAAAGGAGTTAGA+GGG | + | chr1.3:24560189-24560208 | MS.gene66922:CDS | 30.0% | |
| ATGTTGGATGATGATACTAA+AGG | + | chr1.3:24560179-24560198 | MS.gene66922:CDS | 30.0% | |
| CATGTAGAAAAAGTAGAAGT+GGG | - | chr1.3:24558349-24558368 | None:intergenic | 30.0% | |
| GGAAAAAATTGGTTGCAATT+TGG | - | chr1.3:24559651-24559670 | None:intergenic | 30.0% | |
| TAGAACTGTTGGGAAAAAAT+TGG | - | chr1.3:24559662-24559681 | None:intergenic | 30.0% | |
| TAGTTAATAGTTAGTGGAGT+TGG | - | chr1.3:24558904-24558923 | None:intergenic | 30.0% | |
| TATAGGTCAATCAAACACAT+GGG | + | chr1.3:24559224-24559243 | MS.gene66922:intron | 30.0% | |
| TATGTAAGAATGGTGAATCA+AGG | + | chr1.3:24560228-24560247 | MS.gene66922:CDS | 30.0% | |
| TTAGCACACATGAACTATAT+AGG | - | chr1.3:24558250-24558269 | None:intergenic | 30.0% | |
| TTATGGTCATGTTGATATGT+TGG | + | chr1.3:24560163-24560182 | MS.gene66922:CDS | 30.0% | |
| TTCACCAAAATAGAACTGTT+GGG | - | chr1.3:24559672-24559691 | None:intergenic | 30.0% | |
| TTCTTGAAAGCTTATTTGCA+TGG | + | chr1.3:24560290-24560309 | MS.gene66922:CDS | 30.0% | |
| TTTCACCAAAATAGAACTGT+TGG | - | chr1.3:24559673-24559692 | None:intergenic | 30.0% | |
| TTTCCTCTCTTAGTTGTATA+CGG | + | chr1.3:24559701-24559720 | MS.gene66922:intron | 30.0% | |
| ! | AGTGCTAACTTGTCAAAATT+TGG | - | chr1.3:24559825-24559844 | None:intergenic | 30.0% |
| ! | TATTTTGTGGCTAAGGATTA+TGG | + | chr1.3:24560146-24560165 | MS.gene66922:CDS | 30.0% |
| ! | TTATTTGCATGGTGATAATG+TGG | + | chr1.3:24560301-24560320 | MS.gene66922:CDS | 30.0% |
| ! | TTTTCCCAACAGTTCTATTT+TGG | + | chr1.3:24559665-24559684 | MS.gene66922:intron | 30.0% |
| !! | AATTTTGACAAGTTAGCACT+TGG | + | chr1.3:24559825-24559844 | MS.gene66922:CDS | 30.0% |
| AAATGTTTATTTGGGGGGTT+TGG | - | chr1.3:24559014-24559033 | None:intergenic | 35.0% | |
| AACTGGATCAACTCCTATTA+TGG | - | chr1.3:24559931-24559950 | None:intergenic | 35.0% | |
| AGATTCACACACATAATGTG+TGG | - | chr1.3:24559524-24559543 | None:intergenic | 35.0% | |
| AGCCATGTGTTAAGATTCTT+AGG | - | chr1.3:24558948-24558967 | None:intergenic | 35.0% | |
| ATCAACCTTTAGTAGCTTAG+TGG | - | chr1.3:24558167-24558186 | None:intergenic | 35.0% | |
| CCATGTAGAAAAAGTAGAAG+TGG | - | chr1.3:24558350-24558369 | None:intergenic | 35.0% | |
| CTATACCACTAAGCTACTAA+AGG | + | chr1.3:24558159-24558178 | MS.gene66922:CDS | 35.0% | |
| CTGTAGCTGCAATAACAAAT+TGG | + | chr1.3:24559757-24559776 | MS.gene66922:CDS | 35.0% | |
| GATGATACTAAAGGAGTTAG+AGG | + | chr1.3:24560188-24560207 | MS.gene66922:CDS | 35.0% | |
| GTATAGGTCAATCAAACACA+TGG | + | chr1.3:24559223-24559242 | MS.gene66922:intron | 35.0% | |
| TGATTACGATATGGCAACAT+TGG | + | chr1.3:24560013-24560032 | MS.gene66922:CDS | 35.0% | |
| TGTTCACGTACACAACAATA+TGG | + | chr1.3:24558190-24558209 | MS.gene66922:CDS | 35.0% | |
| TTAGCCACAAAATACCAAGA+AGG | - | chr1.3:24560140-24560159 | None:intergenic | 35.0% | |
| TTGATTGCAACTCCTATTGA+AGG | + | chr1.3:24558314-24558333 | MS.gene66922:CDS | 35.0% | |
| ! | ACAATTTTCTACACTGTGCA+AGG | - | chr1.3:24558702-24558721 | None:intergenic | 35.0% |
| ! | GAAACCTTCTTGGTATTTTG+TGG | + | chr1.3:24560133-24560152 | MS.gene66922:CDS | 35.0% |
| ! | GATATGGCAACATTGGTTAT+TGG | + | chr1.3:24560020-24560039 | MS.gene66922:CDS | 35.0% |
| ! | GATATTTGTTGGAGGAGTTA+TGG | + | chr1.3:24560262-24560281 | MS.gene66922:CDS | 35.0% |
| ! | GTTGCAATCAAGAGAGATTT+TGG | - | chr1.3:24558305-24558324 | None:intergenic | 35.0% |
| ! | TTCTTGGTATTTTGTGGCTA+AGG | + | chr1.3:24560139-24560158 | MS.gene66922:CDS | 35.0% |
| !! | TTGGTTATTGGTTCTGGTTT+AGG | + | chr1.3:24560032-24560051 | MS.gene66922:CDS | 35.0% |
| !!! | CCACTTCTACTTTTTCTACA+TGG | + | chr1.3:24558347-24558366 | MS.gene66922:CDS | 35.0% |
| !!! | TTTTTTGTCAGGTAGCCTAT+TGG | - | chr1.3:24559549-24559568 | None:intergenic | 35.0% |
| ATTGCAACTCCTATTGAAGG+TGG | + | chr1.3:24558317-24558336 | MS.gene66922:CDS | 40.0% | |
| CCTCCAACAAATATCCTCAT+AGG | - | chr1.3:24560257-24560276 | None:intergenic | 40.0% | |
| CCTTTATCCATTCCATCAAC+TGG | - | chr1.3:24559948-24559967 | None:intergenic | 40.0% | |
| CTACCAACTGGCTACAATTA+CGG | - | chr1.3:24559445-24559464 | None:intergenic | 40.0% | |
| GTCAAATAGGAACTAACCTG+AGG | - | chr1.3:24558446-24558465 | None:intergenic | 40.0% | |
| GTGAATCAAGGAAACCTATG+AGG | + | chr1.3:24560240-24560259 | MS.gene66922:CDS | 40.0% | |
| TACCAACTGGCTACAATTAC+GGG | - | chr1.3:24559444-24559463 | None:intergenic | 40.0% | |
| TATCACGGACATTATGTGCA+GGG | + | chr1.3:24559466-24559485 | MS.gene66922:intron | 40.0% | |
| TGAGGAACATAGGTGAGAAT+TGG | - | chr1.3:24559987-24560006 | None:intergenic | 40.0% | |
| TGTGTGTGAATCTAGCCAAT+AGG | + | chr1.3:24559531-24559550 | MS.gene66922:intron | 40.0% | |
| TTTGACAAGTTAGCACTTGG+TGG | + | chr1.3:24559828-24559847 | MS.gene66922:CDS | 40.0% | |
| ! | ATAGGAGTTGATCCAGTTGA+TGG | + | chr1.3:24559933-24559952 | MS.gene66922:CDS | 40.0% |
| ! | ATTGAGCATGTTGCTTCTCA+TGG | + | chr1.3:24558404-24558423 | MS.gene66922:CDS | 40.0% |
| ! | ATTTTCTACACTGTGCAAGG+AGG | - | chr1.3:24558699-24558718 | None:intergenic | 40.0% |
| ! | CCTATGAGGATATTTGTTGG+AGG | + | chr1.3:24560254-24560273 | MS.gene66922:CDS | 40.0% |
| ! | GCAATCAAGAGAGATTTTGG+TGG | - | chr1.3:24558302-24558321 | None:intergenic | 40.0% |
| ! | TGCTAGGACTATGAGAGTAT+AGG | + | chr1.3:24559207-24559226 | MS.gene66922:intron | 40.0% |
| !! | AGTTGATCCAGTTGATGGAA+TGG | + | chr1.3:24559938-24559957 | MS.gene66922:CDS | 40.0% |
| !! | ATCAAGAGAGATTTTGGTGG+TGG | - | chr1.3:24558299-24558318 | None:intergenic | 40.0% |
| !! | CCAGTTGATGGAATGGATAA+AGG | + | chr1.3:24559945-24559964 | MS.gene66922:CDS | 40.0% |
| !! | GCAACATTGGTTATTGGTTC+TGG | + | chr1.3:24560026-24560045 | MS.gene66922:CDS | 40.0% |
| !! | GTTTGCAAGAAGCACTTCTA+GGG | + | chr1.3:24558495-24558514 | MS.gene66922:intron | 40.0% |
| !! | TGTTTGCAAGAAGCACTTCT+AGG | + | chr1.3:24558494-24558513 | MS.gene66922:intron | 40.0% |
| AACCCTATACCTCTAACCTC+TGG | + | chr1.3:24558970-24558989 | MS.gene66922:intron | 45.0% | |
| ACACATAATGTGTGGAGAGG+TGG | - | chr1.3:24559516-24559535 | None:intergenic | 45.0% | |
| ATCACGGACATTATGTGCAG+GGG | + | chr1.3:24559467-24559486 | MS.gene66922:intron | 45.0% | |
| CACACACATAATGTGTGGAG+AGG | - | chr1.3:24559519-24559538 | None:intergenic | 45.0% | |
| CCACCGTATACAACTAAGAG+AGG | - | chr1.3:24559707-24559726 | None:intergenic | 45.0% | |
| CCTCTCTTAGTTGTATACGG+TGG | + | chr1.3:24559704-24559723 | MS.gene66922:intron | 45.0% | |
| CTATCACGGACATTATGTGC+AGG | + | chr1.3:24559465-24559484 | MS.gene66922:intron | 45.0% | |
| CTTCATTGTCATTGCTCCTC+AGG | + | chr1.3:24558427-24558446 | MS.gene66922:CDS | 45.0% | |
| GCGAATGTGAGAAACCTTCT+TGG | + | chr1.3:24560123-24560142 | MS.gene66922:CDS | 45.0% | |
| GGAACATAGGTGAGAATTGG+TGG | - | chr1.3:24559984-24560003 | None:intergenic | 45.0% | |
| GGGAAATCTCCACCTTCAAT+AGG | - | chr1.3:24558329-24558348 | None:intergenic | 45.0% | |
| GTGCACAAGGAGGAAACAAA+GGG | - | chr1.3:24560073-24560092 | None:intergenic | 45.0% | |
| TCCTCATGATTGACACCCTT+AGG | - | chr1.3:24560095-24560114 | None:intergenic | 45.0% | |
| TCTTAGTTGTATACGGTGGC+TGG | + | chr1.3:24559708-24559727 | MS.gene66922:intron | 45.0% | |
| TTTCCTCCTTGTGCACCTAA+GGG | + | chr1.3:24560077-24560096 | MS.gene66922:CDS | 45.0% | |
| ! | AGCCAGAGGTTAGAGGTATA+GGG | - | chr1.3:24558975-24558994 | None:intergenic | 45.0% |
| !! | ACCTAAGGGTGTCAATCATG+AGG | + | chr1.3:24560091-24560110 | MS.gene66922:CDS | 45.0% |
| !! | TAGCCAGTTGGTAGCTATCA+CGG | + | chr1.3:24559451-24559470 | MS.gene66922:intron | 45.0% |
| GGTGCACAAGGAGGAAACAA+AGG | - | chr1.3:24560074-24560093 | None:intergenic | 50.0% | |
| GTCCCGTAATTGTAGCCAGT+TGG | + | chr1.3:24559439-24559458 | MS.gene66922:intron | 50.0% | |
| GTTTCCTCCTTGTGCACCTA+AGG | + | chr1.3:24560076-24560095 | MS.gene66922:CDS | 50.0% | |
| TGGTTTGAGCCAGAGGTTAG+AGG | - | chr1.3:24558982-24559001 | None:intergenic | 50.0% | |
| TGTCCGTGATAGCTACCAAC+TGG | - | chr1.3:24559457-24559476 | None:intergenic | 50.0% | |
| TTGACACCCTTAGGTGCACA+AGG | - | chr1.3:24560086-24560105 | None:intergenic | 50.0% | |
| ! | AGAATCTGAGGTTCGAACCC+CGG | - | chr1.3:24559493-24559512 | None:intergenic | 50.0% |
| ! | GAGCCAGAGGTTAGAGGTAT+AGG | - | chr1.3:24558976-24558995 | None:intergenic | 50.0% |
| ACACCCTTAGGTGCACAAGG+AGG | - | chr1.3:24560083-24560102 | None:intergenic | 55.0% | |
| GTGGAGAGGTGGAGAATCTG+AGG | - | chr1.3:24559505-24559524 | None:intergenic | 55.0% | |
| ! | GCACTTGGTGGTCATAGTCG+CGG | + | chr1.3:24559840-24559859 | MS.gene66922:CDS | 55.0% |
| !! | GCTCAACTGGTTTGAGCCAG+AGG | - | chr1.3:24558989-24559008 | None:intergenic | 55.0% |
| CGGACATTATGTGCAGGGGC+CGG | + | chr1.3:24559471-24559490 | MS.gene66922:intron | 60.0% | |
| GACATTATGTGCAGGGGCCG+GGG | + | chr1.3:24559473-24559492 | MS.gene66922:intron | 60.0% | |
| GGACATTATGTGCAGGGGCC+GGG | + | chr1.3:24559472-24559491 | MS.gene66922:intron | 60.0% | |
| ! | CTTGGTGGTCATAGTCGCGG+CGG | + | chr1.3:24559843-24559862 | MS.gene66922:CDS | 60.0% |
| ! | GGGGGGTTTGGTAGCTCAAC+TGG | - | chr1.3:24559002-24559021 | None:intergenic | 60.0% |
| ! | TTGGTGGTCATAGTCGCGGC+GGG | + | chr1.3:24559844-24559863 | MS.gene66922:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 24558121 | 24560391 | 24558121 | ID=MS.gene66922 |
| chr1.3 | mRNA | 24558121 | 24560391 | 24558121 | ID=MS.gene66922.t1;Parent=MS.gene66922 |
| chr1.3 | exon | 24558121 | 24558211 | 24558121 | ID=MS.gene66922.t1.exon1;Parent=MS.gene66922.t1 |
| chr1.3 | CDS | 24558121 | 24558211 | 24558121 | ID=cds.MS.gene66922.t1;Parent=MS.gene66922.t1 |
| chr1.3 | exon | 24558294 | 24558448 | 24558294 | ID=MS.gene66922.t1.exon2;Parent=MS.gene66922.t1 |
| chr1.3 | CDS | 24558294 | 24558448 | 24558294 | ID=cds.MS.gene66922.t1;Parent=MS.gene66922.t1 |
| chr1.3 | exon | 24559714 | 24560391 | 24559714 | ID=MS.gene66922.t1.exon3;Parent=MS.gene66922.t1 |
| chr1.3 | CDS | 24559714 | 24560391 | 24559714 | ID=cds.MS.gene66922.t1;Parent=MS.gene66922.t1 |
| Gene Sequence |
| Protein sequence |
