Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66990.t1 | XP_013451570.1 | 93.7 | 63 | 4 | 0 | 394 | 456 | 355 | 417 | 7.70E-20 | 108.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66990.t1 | A0A072U911 | 93.7 | 63 | 4 | 0 | 394 | 456 | 355 | 417 | 5.5e-20 | 108.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene66990 | 0.815645 | 8.31E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene66990 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene66990 | 0.846525 | 2.06E-59 | -1.69E-46 |
| MS.gene049343 | MS.gene66990 | 0.825246 | 5.20E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene66990 | 0.80625 | 9.01E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene66990 | 0.82291 | 1.84E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene66990 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene66990 | 0.829084 | 6.28E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene66990 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene051594 | MS.gene66990 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene66990 | 0.815769 | 7.80E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene66990 | 0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene66990 | 0.869908 | 2.18E-66 | -1.69E-46 |
| MS.gene052582 | MS.gene66990 | 0.816657 | 4.94E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene66990 | 0.830263 | 3.24E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene66990 | 0.810467 | 1.14E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene66990 | 0.874799 | 5.09E-68 | -1.69E-46 |
| MS.gene053008 | MS.gene66990 | 0.802201 | 6.28E-49 | -1.69E-46 |
| MS.gene053146 | MS.gene66990 | 0.808612 | 2.84E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene66990 | 0.828013 | 1.14E-54 | -1.69E-46 |
| MS.gene053272 | MS.gene66990 | -0.809281 | 2.04E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene66990 | 0.807693 | 4.46E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene66990 | 0.856064 | 4.14E-62 | -1.69E-46 |
| MS.gene055464 | MS.gene66990 | 0.818335 | 2.07E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene66990 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene66990 | 0.833148 | 6.30E-56 | -1.69E-46 |
| MS.gene055841 | MS.gene66990 | 0.814056 | 1.87E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene66990 | 0.824587 | 7.45E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene66990 | 0.802167 | 6.38E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene66990 | 0.813837 | 2.09E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene66990 | 0.805688 | 1.18E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene66990 | 0.80947 | 1.86E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene66990 | 0.824659 | 7.16E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene66990 | 0.83168 | 1.45E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene66990 | 0.832581 | 8.71E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene66990 | 0.839341 | 1.68E-57 | -1.69E-46 |
| MS.gene057693 | MS.gene66990 | 0.808234 | 3.42E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene66990 | 0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene66990 | 0.839519 | 1.51E-57 | -1.69E-46 |
| MS.gene058009 | MS.gene66990 | 0.845457 | 4.01E-59 | -1.69E-46 |
| MS.gene058037 | MS.gene66990 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene058088 | MS.gene66990 | 0.82719 | 1.79E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene66990 | 0.825641 | 4.20E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene66990 | 0.835051 | 2.10E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene66990 | 0.883323 | 4.94E-71 | -1.69E-46 |
| MS.gene058979 | MS.gene66990 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene66990 | 0.824816 | 6.58E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene66990 | 0.838988 | 2.07E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene66990 | -0.808476 | 3.04E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene66990 | 0.833254 | 5.93E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene66990 | 0.805898 | 1.07E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene66990 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene66990 | 0.834307 | 3.23E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene66990 | 0.81486 | 1.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66990.t1 | MTR_6g028130 | 89.848 | 197 | 16 | 1 | 1 | 193 | 1 | 197 | 3.16e-32 | 127 |
| MS.gene66990.t1 | MTR_6g028130 | 91.156 | 147 | 13 | 0 | 310 | 456 | 271 | 417 | 4.80e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTTGCTGAGGATAAAA+AGG | 0.295046 | 6.4:-3716103 | MS.gene66990:CDS |
| CTTCAGCTTGCTGACATCAT+TGG | 0.314579 | 6.4:+3715234 | None:intergenic |
| GGAGTTGTTTCGAGGGAGAT+AGG | 0.370164 | 6.4:-3715388 | MS.gene66990:CDS |
| CTTCTTCTCTTCTCCTTCAT+CGG | 0.374107 | 6.4:+3715672 | None:intergenic |
| CTTCTTCTCTTCTCCATCAT+CGG | 0.378473 | 6.4:+3715807 | None:intergenic |
| GAAAAGAAAGACAAGGGAAA+GGG | 0.380268 | 6.4:-3715634 | MS.gene66990:CDS |
| GAAAGAGAAGACAGATGATA+AGG | 0.385998 | 6.4:-3715413 | MS.gene66990:CDS |
| TGGTGAAGTGAATAAGAAAA+AGG | 0.390637 | 6.4:-3715599 | MS.gene66990:CDS |
| GGGAAGAAGAGAAAGTTATC+TGG | 0.404078 | 6.4:-3715268 | MS.gene66990:CDS |
| GAAAAGAAAGACCAGGGAAA+GGG | 0.415033 | 6.4:-3715769 | MS.gene66990:CDS |
| TCAGATGATTCTAAAGATAT+CGG | 0.416847 | 6.4:-3716300 | MS.gene66990:CDS |
| GAAAGAAAAGGTGAAAAGTA+AGG | 0.419739 | 6.4:-3716145 | MS.gene66990:CDS |
| ATCTTCTTCCGCTTTCTCCT+CGG | 0.426624 | 6.4:+3715354 | None:intergenic |
| TGAGAAAGAAGGTGATGTAA+AGG | 0.431997 | 6.4:-3716406 | MS.gene66990:CDS |
| CTTCTTCGCTTCTCCTTCAT+CGG | 0.436907 | 6.4:+3715513 | None:intergenic |
| AGAAACACTTCTTGAACAAA+AGG | 0.438069 | 6.4:-3715182 | MS.gene66990:CDS |
| CAAAAGCTTGAAAAGATCAA+TGG | 0.445389 | 6.4:-3715211 | MS.gene66990:CDS |
| AGGAGAGGATAGTGAAAAGA+AGG | 0.464984 | 6.4:-3715977 | MS.gene66990:CDS |
| GAAGATGAGGAAATTGATGA+TGG | 0.465754 | 6.4:-3715337 | MS.gene66990:CDS |
| CAGCTACTCAACCGCATCCC+TGG | 0.467236 | 6.4:+3715099 | None:intergenic |
| ATGTCGTCGTGGAGAAGGCC+AGG | 0.469530 | 6.4:-3715117 | MS.gene66990:CDS |
| AGAAAAGAAAGACAAGGGAA+AGG | 0.469773 | 6.4:-3715635 | MS.gene66990:CDS |
| GAAAACAGAGAAGAAAGAAA+AGG | 0.469942 | 6.4:-3716157 | MS.gene66990:CDS |
| AAAAGCTTGAAAAGATCAAT+GGG | 0.470870 | 6.4:-3715210 | MS.gene66990:CDS |
| TGAAGGTGAAGACGGTAAGA+AGG | 0.475165 | 6.4:-3716070 | MS.gene66990:CDS |
| CGTGGAGAAGGCCAGGGATG+CGG | 0.478123 | 6.4:-3715110 | MS.gene66990:CDS |
| GAAGAGAAAGTTATCTGGAA+AGG | 0.479246 | 6.4:-3715263 | MS.gene66990:CDS |
| CATCCTCGTCTCCCTTTCCC+TGG | 0.483666 | 6.4:+3715758 | None:intergenic |
| GAGAAGACAGATGATAAGGA+TGG | 0.486314 | 6.4:-3715409 | MS.gene66990:CDS |
| ACACGGTGACAAGGAAGAAA+AGG | 0.490673 | 6.4:-3716256 | MS.gene66990:CDS |
| GGGGAAAGAAGATGTAGGAG+AGG | 0.491438 | 6.4:-3715992 | MS.gene66990:CDS |
| CGATGAAGGAGAAGAGAAGA+AGG | 0.498754 | 6.4:-3715671 | MS.gene66990:CDS |
| AAGGAGAATAAAGACAAGGA+TGG | 0.499016 | 6.4:-3716126 | MS.gene66990:CDS |
| CGATGAAGGAGAAGCGAAGA+AGG | 0.499033 | 6.4:-3715512 | MS.gene66990:CDS |
| GTGGTGAAATCGACGGGAAA+GGG | 0.501431 | 6.4:-3715904 | MS.gene66990:CDS |
| TCTAAAGATATCGGTGAAGA+TGG | 0.508358 | 6.4:-3716291 | MS.gene66990:CDS |
| AAACAAAGGTGAGGAAGAAG+AGG | 0.511852 | 6.4:-3715467 | MS.gene66990:CDS |
| TGATAAAATCAAGCCGAAGA+AGG | 0.516483 | 6.4:-3715548 | MS.gene66990:CDS |
| CTTCAGTTCTACTTCTAACT+CGG | 0.517888 | 6.4:+3716374 | None:intergenic |
| CGATGATGGAGAAGAGAAGA+AGG | 0.519003 | 6.4:-3715806 | MS.gene66990:CDS |
| AGGTTATGTCGTCGTGGAGA+AGG | 0.529920 | 6.4:-3715122 | MS.gene66990:CDS |
| ATAAGGATGGAGTTGTTTCG+AGG | 0.535120 | 6.4:-3715396 | MS.gene66990:CDS |
| GGAAAGGGAGATGAGGATGA+TGG | 0.535781 | 6.4:-3715619 | MS.gene66990:CDS |
| AAAGAAGACAAGGACAAAGG+TGG | 0.536507 | 6.4:-3715289 | MS.gene66990:CDS |
| AGACAAGGGAAAGGGAGATG+AGG | 0.545147 | 6.4:-3715626 | MS.gene66990:CDS |
| TGGGAAGGAAGTGAAAGAGA+AGG | 0.550834 | 6.4:-3715317 | MS.gene66990:CDS |
| TGAAGAGATCGAAACAAAGA+AGG | 0.552163 | 6.4:-3716019 | MS.gene66990:CDS |
| AGAAAAGAAAGACCAGGGAA+AGG | 0.557184 | 6.4:-3715770 | MS.gene66990:CDS |
| TGTGGTGAAATCGACGGGAA+AGG | 0.558629 | 6.4:-3715905 | MS.gene66990:CDS |
| AAAGGTGATGAAGGTGAAGA+CGG | 0.561058 | 6.4:-3716078 | MS.gene66990:CDS |
| GGAAAGGGAGACGAGGATGA+CGG | 0.563708 | 6.4:-3715754 | MS.gene66990:CDS |
| AAGAAGACAAGGACAAAGGT+GGG | 0.568761 | 6.4:-3715288 | MS.gene66990:CDS |
| CGAGTTAGAAGTAGAACTGA+AGG | 0.569653 | 6.4:-3716373 | MS.gene66990:CDS |
| TGAGGAAATTGATGATGGGA+AGG | 0.571455 | 6.4:-3715332 | MS.gene66990:CDS |
| AAGACTGAGGATGAGAAAGA+AGG | 0.573061 | 6.4:-3716417 | MS.gene66990:CDS |
| TAAGGATGGAGTTGTTTCGA+GGG | 0.575674 | 6.4:-3715395 | MS.gene66990:CDS |
| GAATAAAGACAAGGATGGAG+TGG | 0.576722 | 6.4:-3716121 | MS.gene66990:CDS |
| GGAGAAAGCGGAAGAAGATG+AGG | 0.582784 | 6.4:-3715350 | MS.gene66990:CDS |
| AACAAAGGTGAGGAAGAAGA+GGG | 0.584773 | 6.4:-3715466 | MS.gene66990:CDS |
| GATGATGTGGTGAAATCGAC+GGG | 0.591968 | 6.4:-3715910 | MS.gene66990:CDS |
| ATCGAAACAAAGAAGGACAA+GGG | 0.592480 | 6.4:-3716012 | MS.gene66990:CDS |
| ATACGAGAAGCAGAAGATGA+AGG | 0.592634 | 6.4:-3715142 | MS.gene66990:CDS |
| AAGATGAGGAAATTGATGAT+GGG | 0.593304 | 6.4:-3715336 | MS.gene66990:CDS |
| GACAAGGGGAAAGAAGATGT+AGG | 0.593494 | 6.4:-3715997 | MS.gene66990:CDS |
| ATCGACGGGAAAGGGAGAAG+AGG | 0.608750 | 6.4:-3715896 | MS.gene66990:CDS |
| TCGAAACAAAGAAGGACAAG+GGG | 0.610740 | 6.4:-3716011 | MS.gene66990:CDS |
| ACAAAAGACCGAGGAGAAAG+CGG | 0.613724 | 6.4:-3715362 | MS.gene66990:CDS |
| GATCGAAACAAAGAAGGACA+AGG | 0.618475 | 6.4:-3716013 | MS.gene66990:CDS |
| CAAGGATGGAGTGGTTGCTG+AGG | 0.621637 | 6.4:-3716112 | MS.gene66990:CDS |
| AGACCAGGGAAAGGGAGACG+AGG | 0.622482 | 6.4:-3715761 | MS.gene66990:CDS |
| TGAGAATAAACACGGTGACA+AGG | 0.628299 | 6.4:-3716265 | MS.gene66990:CDS |
| GGAAAGGGAGAAGAGGATGA+CGG | 0.633241 | 6.4:-3715889 | MS.gene66990:CDS |
| GTTGTTTCGAGGGAGATAGG+TGG | 0.649540 | 6.4:-3715385 | MS.gene66990:CDS |
| CTCTCTAAAGATCAAGACTG+AGG | 0.653524 | 6.4:-3716430 | MS.gene66990:CDS |
| TGATGATGTGGTGAAATCGA+CGG | 0.654535 | 6.4:-3715911 | MS.gene66990:CDS |
| AAGTAAGGAGAATAAAGACA+AGG | 0.656406 | 6.4:-3716130 | MS.gene66990:CDS |
| TGTCGTCGTGGAGAAGGCCA+GGG | 0.660160 | 6.4:-3715116 | MS.gene66990:CDS |
| AAAGCACAAGGATGATGATG+TGG | 0.673676 | 6.4:-3715923 | MS.gene66990:CDS |
| AGATGAAGGTTATGTCGTCG+TGG | 0.684945 | 6.4:-3715128 | MS.gene66990:CDS |
| GATGGTAGTGAGAATAAACA+CGG | 0.724895 | 6.4:-3716273 | MS.gene66990:CDS |
| GATAGGTGGACAAAAGACCG+AGG | 0.748856 | 6.4:-3715371 | MS.gene66990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAGAAAAACAA+AGG | - | chr6.4:3716071-3716090 | MS.gene66990:CDS | 15.0% |
| !! | AAAAAAGAAAAGAAAGACAA+GGG | - | chr6.4:3715912-3715931 | MS.gene66990:CDS | 20.0% |
| ! | AAAAAAGAAAAGAAAGACCA+GGG | - | chr6.4:3715777-3715796 | MS.gene66990:CDS | 25.0% |
| ! | AAAAGCTTGAAAAGATCAAT+GGG | - | chr6.4:3716342-3716361 | MS.gene66990:CDS | 25.0% |
| ! | GAAAAAAGAAAAGAAAGACA+AGG | - | chr6.4:3715911-3715930 | MS.gene66990:CDS | 25.0% |
| !! | TCAGATGATTCTAAAGATAT+CGG | - | chr6.4:3715252-3715271 | MS.gene66990:CDS | 25.0% |
| AAAAAAGAAGACAAGGACAA+AGG | - | chr6.4:3716260-3716279 | MS.gene66990:CDS | 30.0% | |
| AAAAAGCGAAAAGAAAGAGA+AGG | - | chr6.4:3715599-3715618 | MS.gene66990:CDS | 30.0% | |
| AAAGAAAAAGACGACAAAAG+TGG | - | chr6.4:3715339-3715358 | MS.gene66990:CDS | 30.0% | |
| AAAGAAAAAGAGAAGGATAG+TGG | - | chr6.4:3715717-3715736 | MS.gene66990:CDS | 30.0% | |
| AAGTAAGGAGAATAAAGACA+AGG | - | chr6.4:3715422-3715441 | MS.gene66990:CDS | 30.0% | |
| AGAAAAGAAAAACAAAGGTG+AGG | - | chr6.4:3716076-3716095 | MS.gene66990:CDS | 30.0% | |
| AGAAAAGGACAAGAAAAAGA+AGG | - | chr6.4:3715311-3715330 | MS.gene66990:CDS | 30.0% | |
| AGAAACACTTCTTGAACAAA+AGG | - | chr6.4:3716370-3716389 | MS.gene66990:CDS | 30.0% | |
| AGAGAGTAAGAAAAAGAAGA+AGG | - | chr6.4:3715689-3715708 | MS.gene66990:CDS | 30.0% | |
| CAAAAGCTTGAAAAGATCAA+TGG | - | chr6.4:3716341-3716360 | MS.gene66990:CDS | 30.0% | |
| GAAAAAAGAAAAGAAAGACC+AGG | - | chr6.4:3715776-3715795 | MS.gene66990:CDS | 30.0% | |
| GAAAACAGAGAAGAAAGAAA+AGG | - | chr6.4:3715395-3715414 | MS.gene66990:CDS | 30.0% | |
| GAAAGAAAAGGTGAAAAGTA+AGG | - | chr6.4:3715407-3715426 | MS.gene66990:CDS | 30.0% | |
| GGAGAAAAAGAAGAAGAAAA+AGG | - | chr6.4:3715503-3715522 | MS.gene66990:CDS | 30.0% | |
| GGATAAGAAAGAAAAAGAGA+AGG | - | chr6.4:3715710-3715729 | MS.gene66990:CDS | 30.0% | |
| TGGTGAAGTGAATAAGAAAA+AGG | - | chr6.4:3715953-3715972 | MS.gene66990:CDS | 30.0% | |
| ! | AAGAAGCACAAAGAAAAAGA+TGG | - | chr6.4:3715366-3715385 | MS.gene66990:CDS | 30.0% |
| ! | AAGATGAGGAAATTGATGAT+GGG | - | chr6.4:3716216-3716235 | MS.gene66990:CDS | 30.0% |
| ! | AGAGAAAAAGAAAAAGCACA+AGG | - | chr6.4:3715218-3715237 | MS.gene66990:CDS | 30.0% |
| !!! | GTTTTTTCACTATCCTTCTT+CGG | + | chr6.4:3716020-3716039 | None:intergenic | 30.0% |
| AAAAAGGGTAAAGGTGATGA+AGG | - | chr6.4:3715465-3715484 | MS.gene66990:CDS | 35.0% | |
| AAAGAAAAAGAGAAGGACAG+TGG | - | chr6.4:3715852-3715871 | MS.gene66990:CDS | 35.0% | |
| AAGGAGAATAAAGACAAGGA+TGG | - | chr6.4:3715426-3715445 | MS.gene66990:CDS | 35.0% | |
| AGAAAAGAAAGACAAGGGAA+AGG | - | chr6.4:3715917-3715936 | MS.gene66990:CDS | 35.0% | |
| ATCGAAACAAAGAAGGACAA+GGG | - | chr6.4:3715540-3715559 | MS.gene66990:CDS | 35.0% | |
| CTTCAGTTCTACTTCTAACT+CGG | + | chr6.4:3715181-3715200 | None:intergenic | 35.0% | |
| GAAAAGAAAGACAAGGGAAA+GGG | - | chr6.4:3715918-3715937 | MS.gene66990:CDS | 35.0% | |
| GAAAGAAAAAGAGAAGGACA+AGG | - | chr6.4:3715851-3715870 | MS.gene66990:CDS | 35.0% | |
| GAAAGAGAAGACAGATGATA+AGG | - | chr6.4:3716139-3716158 | MS.gene66990:CDS | 35.0% | |
| GAAGAGAAAGTTATCTGGAA+AGG | - | chr6.4:3716289-3716308 | MS.gene66990:CDS | 35.0% | |
| GAAGATGAGGAAATTGATGA+TGG | - | chr6.4:3716215-3716234 | MS.gene66990:CDS | 35.0% | |
| GAAGGAGAAAAAAGAAGACA+AGG | - | chr6.4:3716253-3716272 | MS.gene66990:CDS | 35.0% | |
| GATAGTGAAAAAACCGATGA+AGG | - | chr6.4:3716026-3716045 | MS.gene66990:CDS | 35.0% | |
| TCTAAAGATATCGGTGAAGA+TGG | - | chr6.4:3715261-3715280 | MS.gene66990:CDS | 35.0% | |
| TGAAGAGATCGAAACAAAGA+AGG | - | chr6.4:3715533-3715552 | MS.gene66990:CDS | 35.0% | |
| TGAGAAAGAAGGTGATGTAA+AGG | - | chr6.4:3715146-3715165 | MS.gene66990:CDS | 35.0% | |
| TGATAAAATCAAGCCGAAGA+AGG | - | chr6.4:3716004-3716023 | MS.gene66990:CDS | 35.0% | |
| ! | GAAGGATAAGAAAAAGCACA+AGG | - | chr6.4:3715617-3715636 | MS.gene66990:CDS | 35.0% |
| ! | GATGGTAGTGAGAATAAACA+CGG | - | chr6.4:3715279-3715298 | MS.gene66990:CDS | 35.0% |
| AAACAAAGGTGAGGAAGAAG+AGG | - | chr6.4:3716085-3716104 | MS.gene66990:CDS | 40.0% | |
| AAAGAAGACAAGGACAAAGG+TGG | - | chr6.4:3716263-3716282 | MS.gene66990:CDS | 40.0% | |
| AAAGGTGATGAAGGTGAAGA+CGG | - | chr6.4:3715474-3715493 | MS.gene66990:CDS | 40.0% | |
| AACAAAGGTGAGGAAGAAGA+GGG | - | chr6.4:3716086-3716105 | MS.gene66990:CDS | 40.0% | |
| AAGAAGACAAGGACAAAGGT+GGG | - | chr6.4:3716264-3716283 | MS.gene66990:CDS | 40.0% | |
| AAGACTGAGGATGAGAAAGA+AGG | - | chr6.4:3715135-3715154 | MS.gene66990:CDS | 40.0% | |
| AGAAAAGAAAGACCAGGGAA+AGG | - | chr6.4:3715782-3715801 | MS.gene66990:CDS | 40.0% | |
| AGGAGAGGATAGTGAAAAGA+AGG | - | chr6.4:3715575-3715594 | MS.gene66990:CDS | 40.0% | |
| AGTGGTTGCTGAGGATAAAA+AGG | - | chr6.4:3715449-3715468 | MS.gene66990:CDS | 40.0% | |
| ATACGAGAAGCAGAAGATGA+AGG | - | chr6.4:3716410-3716429 | MS.gene66990:CDS | 40.0% | |
| CGAGTTAGAAGTAGAACTGA+AGG | - | chr6.4:3715179-3715198 | MS.gene66990:CDS | 40.0% | |
| CTTCTTCTCTTCTCCATCAT+CGG | + | chr6.4:3715748-3715767 | None:intergenic | 40.0% | |
| CTTCTTCTCTTCTCCTTCAT+CGG | + | chr6.4:3715883-3715902 | None:intergenic | 40.0% | |
| GAAAAGAAAGACCAGGGAAA+GGG | - | chr6.4:3715783-3715802 | MS.gene66990:CDS | 40.0% | |
| GAATAAAGACAAGGATGGAG+TGG | - | chr6.4:3715431-3715450 | MS.gene66990:CDS | 40.0% | |
| GAGAAGACAGATGATAAGGA+TGG | - | chr6.4:3716143-3716162 | MS.gene66990:CDS | 40.0% | |
| GATCGAAACAAAGAAGGACA+AGG | - | chr6.4:3715539-3715558 | MS.gene66990:CDS | 40.0% | |
| GCTGAGGATAAAAAGGGTAA+AGG | - | chr6.4:3715456-3715475 | MS.gene66990:CDS | 40.0% | |
| GGGAAGAAGAGAAAGTTATC+TGG | - | chr6.4:3716284-3716303 | MS.gene66990:CDS | 40.0% | |
| GTGGTTGCTGAGGATAAAAA+GGG | - | chr6.4:3715450-3715469 | MS.gene66990:CDS | 40.0% | |
| TCGAAACAAAGAAGGACAAG+GGG | - | chr6.4:3715541-3715560 | MS.gene66990:CDS | 40.0% | |
| TGAGAATAAACACGGTGACA+AGG | - | chr6.4:3715287-3715306 | MS.gene66990:CDS | 40.0% | |
| ! | AAAGCACAAGGATGATGATG+TGG | - | chr6.4:3715629-3715648 | MS.gene66990:CDS | 40.0% |
| ! | ATAAGGATGGAGTTGTTTCG+AGG | - | chr6.4:3716156-3716175 | MS.gene66990:CDS | 40.0% |
| ! | CTCTCTAAAGATCAAGACTG+AGG | - | chr6.4:3715122-3715141 | MS.gene66990:CDS | 40.0% |
| ! | TAAGGATGGAGTTGTTTCGA+GGG | - | chr6.4:3716157-3716176 | MS.gene66990:CDS | 40.0% |
| ! | TGATGATGTGGTGAAATCGA+CGG | - | chr6.4:3715641-3715660 | MS.gene66990:CDS | 40.0% |
| !! | GATAGTGGAAAAACCGATGA+TGG | - | chr6.4:3715732-3715751 | MS.gene66990:CDS | 40.0% |
| !! | TGAGGAAATTGATGATGGGA+AGG | - | chr6.4:3716220-3716239 | MS.gene66990:CDS | 40.0% |
| ACAAAAGACCGAGGAGAAAG+CGG | - | chr6.4:3716190-3716209 | MS.gene66990:CDS | 45.0% | |
| ACACGGTGACAAGGAAGAAA+AGG | - | chr6.4:3715296-3715315 | MS.gene66990:CDS | 45.0% | |
| AGATGAAGGTTATGTCGTCG+TGG | - | chr6.4:3716424-3716443 | MS.gene66990:CDS | 45.0% | |
| ATCTTCTTCCGCTTTCTCCT+CGG | + | chr6.4:3716201-3716220 | None:intergenic | 45.0% | |
| CGATGAAGGAGAAGAGAAGA+AGG | - | chr6.4:3715881-3715900 | MS.gene66990:CDS | 45.0% | |
| CTTCTTCGCTTCTCCTTCAT+CGG | + | chr6.4:3716042-3716061 | None:intergenic | 45.0% | |
| GACAAGGGGAAAGAAGATGT+AGG | - | chr6.4:3715555-3715574 | MS.gene66990:CDS | 45.0% | |
| GACAGTGGAAAAACCGATGA+AGG | - | chr6.4:3715867-3715886 | MS.gene66990:CDS | 45.0% | |
| GATGATGTGGTGAAATCGAC+GGG | - | chr6.4:3715642-3715661 | MS.gene66990:CDS | 45.0% | |
| TGAAGGTGAAGACGGTAAGA+AGG | - | chr6.4:3715482-3715501 | MS.gene66990:CDS | 45.0% | |
| TGGGAAGGAAGTGAAAGAGA+AGG | - | chr6.4:3716235-3716254 | MS.gene66990:CDS | 45.0% | |
| !! | CGATGATGGAGAAGAGAAGA+AGG | - | chr6.4:3715746-3715765 | MS.gene66990:CDS | 45.0% |
| !! | CTTCAGCTTGCTGACATCAT+TGG | + | chr6.4:3716321-3716340 | None:intergenic | 45.0% |
| AGACAAGGGAAAGGGAGATG+AGG | - | chr6.4:3715926-3715945 | MS.gene66990:CDS | 50.0% | |
| AGGTTATGTCGTCGTGGAGA+AGG | - | chr6.4:3716430-3716449 | MS.gene66990:CDS | 50.0% | |
| CGATGAAGGAGAAGCGAAGA+AGG | - | chr6.4:3716040-3716059 | MS.gene66990:CDS | 50.0% | |
| GATAGGTGGACAAAAGACCG+AGG | - | chr6.4:3716181-3716200 | MS.gene66990:CDS | 50.0% | |
| GGAAAGGGAGAAGAGGATGA+CGG | - | chr6.4:3715663-3715682 | MS.gene66990:CDS | 50.0% | |
| GGAAAGGGAGATGAGGATGA+TGG | - | chr6.4:3715933-3715952 | MS.gene66990:CDS | 50.0% | |
| GGAGAAAGCGGAAGAAGATG+AGG | - | chr6.4:3716202-3716221 | MS.gene66990:CDS | 50.0% | |
| GGGGAAAGAAGATGTAGGAG+AGG | - | chr6.4:3715560-3715579 | MS.gene66990:CDS | 50.0% | |
| GTGGTGAAATCGACGGGAAA+GGG | - | chr6.4:3715648-3715667 | MS.gene66990:CDS | 50.0% | |
| TGTGGTGAAATCGACGGGAA+AGG | - | chr6.4:3715647-3715666 | MS.gene66990:CDS | 50.0% | |
| ! | GGAGTTGTTTCGAGGGAGAT+AGG | - | chr6.4:3716164-3716183 | MS.gene66990:CDS | 50.0% |
| ! | GTTGTTTCGAGGGAGATAGG+TGG | - | chr6.4:3716167-3716186 | MS.gene66990:CDS | 50.0% |
| ATCGACGGGAAAGGGAGAAG+AGG | - | chr6.4:3715656-3715675 | MS.gene66990:CDS | 55.0% | |
| CAAGGATGGAGTGGTTGCTG+AGG | - | chr6.4:3715440-3715459 | MS.gene66990:CDS | 55.0% | |
| GGAAAGGGAGACGAGGATGA+CGG | - | chr6.4:3715798-3715817 | MS.gene66990:CDS | 55.0% | |
| AGACCAGGGAAAGGGAGACG+AGG | - | chr6.4:3715791-3715810 | MS.gene66990:CDS | 60.0% | |
| ATGTCGTCGTGGAGAAGGCC+AGG | - | chr6.4:3716435-3716454 | MS.gene66990:CDS | 60.0% | |
| CATCCTCGTCTCCCTTTCCC+TGG | + | chr6.4:3715797-3715816 | None:intergenic | 60.0% | |
| TGTCGTCGTGGAGAAGGCCA+GGG | - | chr6.4:3716436-3716455 | MS.gene66990:CDS | 60.0% | |
| CGTGGAGAAGGCCAGGGATG+CGG | - | chr6.4:3716442-3716461 | MS.gene66990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 3715102 | 3716472 | 3715102 | ID=MS.gene66990 |
| chr6.4 | mRNA | 3715102 | 3716472 | 3715102 | ID=MS.gene66990.t1;Parent=MS.gene66990 |
| chr6.4 | exon | 3715102 | 3716472 | 3715102 | ID=MS.gene66990.t1.exon1;Parent=MS.gene66990.t1 |
| chr6.4 | CDS | 3715102 | 3716472 | 3715102 | ID=cds.MS.gene66990.t1;Parent=MS.gene66990.t1 |
| Gene Sequence |
| Protein sequence |
