AlfalfaGEDB | MS.gene66990

M. sativa cultivar XinJiangDaYe / MS.gene66990

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66990.t1	XP_013451570.1	93.7	63	4	0	394	456	355	417	7.70E-20	108.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66990.t1	A0A072U911	93.7	63	4	0	394	456	355	417	5.5e-20	108.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene66990	0.815645	8.31E-52	-1.69E-46
MS.gene04920	MS.gene66990	0.800048	1.73E-48	-1.69E-46
MS.gene049254	MS.gene66990	0.846525	2.06E-59	-1.69E-46
MS.gene049343	MS.gene66990	0.825246	5.20E-54	-1.69E-46
MS.gene049404	MS.gene66990	0.80625	9.01E-50	-1.69E-46
MS.gene049499	MS.gene66990	0.82291	1.84E-53	-1.69E-46
MS.gene049873	MS.gene66990	0.803393	3.56E-49	-1.69E-46
MS.gene049983	MS.gene66990	0.829084	6.28E-55	-1.69E-46
MS.gene050559	MS.gene66990	0.800238	1.58E-48	-1.69E-46
MS.gene051594	MS.gene66990	0.803547	3.31E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66990.t1	MTR_6g028130	89.848	197	16	1	1	193	1	197	3.16e-32	127
MS.gene66990.t1	MTR_6g028130	91.156	147	13	0	310	456	271	417	4.80e-25	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 81 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGAAAAGATCAAT+GGG	0.470870	6.4:-3715210	MS.gene66990:CDS
AAACAAAGGTGAGGAAGAAG+AGG	0.511852	6.4:-3715467	MS.gene66990:CDS
AAAGAAGACAAGGACAAAGG+TGG	0.536507	6.4:-3715289	MS.gene66990:CDS
AAAGCACAAGGATGATGATG+TGG	0.673676	6.4:-3715923	MS.gene66990:CDS
AAAGGTGATGAAGGTGAAGA+CGG	0.561058	6.4:-3716078	MS.gene66990:CDS
AACAAAGGTGAGGAAGAAGA+GGG	0.584773	6.4:-3715466	MS.gene66990:CDS
AAGAAGACAAGGACAAAGGT+GGG	0.568761	6.4:-3715288	MS.gene66990:CDS
AAGACTGAGGATGAGAAAGA+AGG	0.573061	6.4:-3716417	MS.gene66990:CDS
AAGATGAGGAAATTGATGAT+GGG	0.593304	6.4:-3715336	MS.gene66990:CDS
AAGGAGAATAAAGACAAGGA+TGG	0.499016	6.4:-3716126	MS.gene66990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGAAGACAAGGACAA+AGG	-	chr6.4:3716260-3716279	MS.gene66990:CDS	30.0%
AAAAAGCGAAAAGAAAGAGA+AGG	-	chr6.4:3715599-3715618	MS.gene66990:CDS	30.0%
AAAGAAAAAGACGACAAAAG+TGG	-	chr6.4:3715339-3715358	MS.gene66990:CDS	30.0%
AAAGAAAAAGAGAAGGATAG+TGG	-	chr6.4:3715717-3715736	MS.gene66990:CDS	30.0%
AAGTAAGGAGAATAAAGACA+AGG	-	chr6.4:3715422-3715441	MS.gene66990:CDS	30.0%
AGAAAAGAAAAACAAAGGTG+AGG	-	chr6.4:3716076-3716095	MS.gene66990:CDS	30.0%
AGAAAAGGACAAGAAAAAGA+AGG	-	chr6.4:3715311-3715330	MS.gene66990:CDS	30.0%
AGAAACACTTCTTGAACAAA+AGG	-	chr6.4:3716370-3716389	MS.gene66990:CDS	30.0%
AGAGAGTAAGAAAAAGAAGA+AGG	-	chr6.4:3715689-3715708	MS.gene66990:CDS	30.0%
CAAAAGCTTGAAAAGATCAA+TGG	-	chr6.4:3716341-3716360	MS.gene66990:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	3715102	3716472	3715102	ID=MS.gene66990
chr6.4	mRNA	3715102	3716472	3715102	ID=MS.gene66990.t1;Parent=MS.gene66990
chr6.4	exon	3715102	3716472	3715102	ID=MS.gene66990.t1.exon1;Parent=MS.gene66990.t1
chr6.4	CDS	3715102	3716472	3715102	ID=cds.MS.gene66990.t1;Parent=MS.gene66990.t1

Gene Sequence

>MS.gene66990

ATGGAAGACAAATCAACTATCTCTCTAAAGATCAAGACTGAGGATGAGAAAGAAGGTGATGTAAAGGAAGATAAGACCGAGTTAGAAGTAGAACTGAAGGTTAAGAACAAATCAGCAGAGAAAAAGAAAAAGCACAAGGATGAAAAGAAATCAGATGATTCTAAAGATATCGGTGAAGATGGTAGTGAGAATAAACACGGTGACAAGGAAGAAAAGGACAAGAAAAAGAAGGAAAAGAAAGAAAAAGACGACAAAAGTGGCACAAAGAAGCACAAAGAAAAAGATGGCGATGAGAAAACAGAGAAGAAAGAAAAGGTGAAAAGTAAGGAGAATAAAGACAAGGATGGAGTGGTTGCTGAGGATAAAAAGGGTAAAGGTGATGAAGGTGAAGACGGTAAGAAGGAGAAAAAGAAGAAGAAAAAGGATAAAGATGAAGAGATCGAAACAAAGAAGGACAAGGGGAAAGAAGATGTAGGAGAGGATAGTGAAAAGAAGGAAAAAAGCGAAAAGAAAGAGAAGGATAAGAAAAAGCACAAGGATGATGATGTGGTGAAATCGACGGGAAAGGGAGAAGAGGATGACGGCGAAGAGAGTAAGAAAAAGAAGAAGGATAAGAAAGAAAAAGAGAAGGATAGTGGAAAAACCGATGATGGAGAAGAGAAGAAGGATGCGAAGAAAAAAGAAAAGAAAGACCAGGGAAAGGGAGACGAGGATGACGGCGAAGAGAGTAAGAAAAAGAAGAAGGATAAGAAAGAAAAAGAGAAGGACAGTGGAAAAACCGATGAAGGAGAAGAGAAGAAGGATGCGAAGAAAAAAGAAAAGAAAGACAAGGGAAAGGGAGATGAGGATGATGGTGAAGTGAATAAGAAAAAGGATAAGAAAGAAAAAGAGAAGGACAAGGATGATAAAATCAAGCCGAAGAAGGATAGTGAAAAAACCGATGAAGGAGAAGCGAAGAAGGATAAGAAGAAAAAAGAAAAGAAAAACAAAGGTGAGGAAGAAGAGGGTGATAAAGATGAGAAAAAAGTAATCAAAAAGAAAGAGAAGACAGATGATAAGGATGGAGTTGTTTCGAGGGAGATAGGTGGACAAAAGACCGAGGAGAAAGCGGAAGAAGATGAGGAAATTGATGATGGGAAGGAAGTGAAAGAGAAGGAGAAAAAAGAAGACAAGGACAAAGGTGGGAAGAAGAGAAAGTTATCTGGAAAGGATAAGTCCAATGATGTCAGCAAGCTGAAGCAAAAGCTTGAAAAGATCAATGGGAAAATAGAAACACTTCTTGAACAAAAGGCAGACATAGAAAAACAAATACGAGAAGCAGAAGATGAAGGTTATGTCGTCGTGGAGAAGGCCAGGGATGCGGTTGAGTAG

Protein sequence

>MS.gene66990.t1

MEDKSTISLKIKTEDEKEGDVKEDKTELEVELKVKNKSAEKKKKHKDEKKSDDSKDIGEDGSENKHGDKEEKDKKKKEKKEKDDKSGTKKHKEKDGDEKTEKKEKVKSKENKDKDGVVAEDKKGKGDEGEDGKKEKKKKKKDKDEEIETKKDKGKEDVGEDSEKKEKSEKKEKDKKKHKDDDVVKSTGKGEEDDGEESKKKKKDKKEKEKDSGKTDDGEEKKDAKKKEKKDQGKGDEDDGEESKKKKKDKKEKEKDSGKTDEGEEKKDAKKKEKKDKGKGDEDDGEVNKKKDKKEKEKDKDDKIKPKKDSEKTDEGEAKKDKKKKEKKNKGEEEEGDKDEKKVIKKKEKTDDKDGVVSREIGGQKTEEKAEEDEEIDDGKEVKEKEKKEDKDKGGKKRKLSGKDKSNDVSKLKQKLEKINGKIETLLEQKADIEKQIREAEDEGYVVVEKARDAVE