AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67155

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67155.t1 MTR_1g042160 80.805 323 47 2 1 323 1 308 0.0 526
MS.gene67155.t1 MTR_7g107200 42.408 382 157 5 1 325 1 376 3.34e-102 305
MS.gene67155.t1 MTR_7g107160 43.582 335 166 7 2 323 119 443 1.07e-77 244
MS.gene67155.t1 MTR_7g107160 57.018 114 47 1 69 182 1 112 1.12e-36 137
MS.gene67155.t1 MTR_7g107170 59.006 161 52 2 183 329 109 269 7.35e-55 180
MS.gene67155.t1 MTR_7g107170 54.023 87 40 0 228 314 1 87 7.67e-23 96.3
MS.gene67155.t1 MTR_8g011730 31.180 356 191 7 12 326 13 355 2.40e-46 160
MS.gene67155.t1 MTR_3g079840 46.923 130 67 1 13 142 57 184 1.59e-37 142
MS.gene67155.t1 MTR_3g079840 46.923 130 67 1 13 142 56 183 1.62e-37 142
MS.gene67155.t1 MTR_5g086700 45.385 130 69 1 13 142 61 188 1.19e-36 140
MS.gene67155.t1 MTR_5g086700 45.385 130 69 1 13 142 61 188 1.20e-36 140
MS.gene67155.t1 MTR_5g091450 41.270 126 73 1 13 138 33 157 1.45e-31 125
MS.gene67155.t1 MTR_1g041240 42.748 131 72 2 13 143 58 185 2.19e-31 125
MS.gene67155.t1 MTR_1g041240 42.748 131 72 2 13 143 59 186 2.21e-31 125
MS.gene67155.t1 MTR_1g041240 42.748 131 72 2 13 143 57 184 2.48e-31 124
MS.gene67155.t1 MTR_5g091180 39.416 137 80 2 13 149 46 179 8.23e-27 111
MS.gene67155.t1 MTR_5g091550 35.433 127 80 1 12 138 18 142 5.25e-23 99.8
MS.gene67155.t1 MTR_5g091550 35.433 127 80 1 12 138 18 142 5.32e-23 99.4
MS.gene67155.t1 MTR_3g106700 31.915 141 87 2 13 144 406 546 3.97e-19 89.0
MS.gene67155.t1 MTR_3g106700 28.906 128 88 3 16 140 71 198 3.67e-13 70.9
MS.gene67155.t1 MTR_4g123750 23.718 156 111 3 14 161 20 175 7.75e-15 74.3
MS.gene67155.t1 MTR_4g123750 31.008 129 87 2 13 140 176 303 1.11e-11 65.1
MS.gene67155.t1 MTR_1g073800 27.891 147 102 4 2 147 38 181 4.18e-14 73.2
MS.gene67155.t1 MTR_1g073790 27.891 147 100 4 2 147 51 192 1.28e-13 72.4
MS.gene67155.t1 MTR_1g044450 29.630 135 89 4 9 142 61 190 5.58e-13 70.5
MS.gene67155.t1 MTR_5g091530 36.047 86 55 0 54 139 1 86 3.54e-12 67.0
MS.gene67155.t1 MTR_2g034780 34.586 133 70 5 195 323 140 259 1.09e-11 64.7
MS.gene67155.t1 MTR_8g006190 26.667 120 83 2 26 140 5 124 3.27e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67155.t1 AT5G06600 50.000 130 63 1 13 142 55 182 5.55e-37 141
MS.gene67155.t1 AT5G06600 50.000 130 63 1 13 142 56 183 5.55e-37 141
MS.gene67155.t1 AT5G06600 50.000 130 63 1 13 142 56 183 5.98e-37 141
MS.gene67155.t1 AT3G11910 49.231 130 64 1 13 142 54 181 1.15e-36 140
MS.gene67155.t1 AT3G11910 49.231 130 64 1 13 142 54 181 1.15e-36 140
MS.gene67155.t1 AT3G11910 49.231 130 64 1 13 142 55 182 1.17e-36 140
MS.gene67155.t1 AT3G11910 49.231 130 64 1 13 142 55 182 1.17e-36 140
MS.gene67155.t1 AT3G58250 37.984 129 80 0 12 140 9 137 1.14e-26 107
MS.gene67155.t1 AT3G58270 38.636 132 79 1 9 140 4 133 6.57e-25 103
MS.gene67155.t1 AT3G58270 38.636 132 79 1 9 140 4 133 6.57e-25 103
MS.gene67155.t1 AT3G58270 38.636 132 79 1 9 140 4 133 6.57e-25 103
MS.gene67155.t1 AT3G58360 26.557 305 196 6 9 301 4 292 3.44e-21 92.4
MS.gene67155.t1 AT3G58340 33.071 127 83 1 12 138 7 131 4.71e-21 92.0
MS.gene67155.t1 AT3G58340 33.071 127 83 1 12 138 7 131 5.83e-21 92.0
MS.gene67155.t1 AT2G05410 36.000 125 77 2 5 129 2 123 5.94e-19 86.3
MS.gene67155.t1 AT3G58210 32.812 128 86 0 13 140 8 135 4.50e-18 84.0
MS.gene67155.t1 AT3G58370 34.328 134 85 2 7 138 3 135 1.97e-17 81.6
MS.gene67155.t1 AT3G58410 30.769 130 85 2 9 138 4 128 7.62e-17 80.5
MS.gene67155.t1 AT3G58350 32.090 134 88 2 12 143 7 139 9.21e-17 79.7
MS.gene67155.t1 AT3G58350 32.090 134 88 2 12 143 7 139 9.21e-17 79.7
MS.gene67155.t1 AT2G25320 30.496 141 88 3 13 144 405 544 1.08e-16 81.6
MS.gene67155.t1 AT2G25320 29.688 128 87 3 16 140 76 203 1.23e-13 72.4
MS.gene67155.t1 AT2G25320 30.496 141 88 3 13 144 404 543 1.09e-16 81.6
MS.gene67155.t1 AT2G25320 29.688 128 87 3 16 140 75 202 1.23e-13 72.4
MS.gene67155.t1 AT2G25320 30.496 141 88 3 13 144 405 544 2.07e-16 80.9
MS.gene67155.t1 AT2G25320 29.688 128 87 3 16 140 76 203 1.22e-13 72.4
MS.gene67155.t1 AT2G25330 31.915 141 87 2 13 144 359 499 3.90e-16 79.7
MS.gene67155.t1 AT2G25330 28.906 128 88 3 16 140 50 177 1.37e-12 68.9
MS.gene67155.t1 AT3G27040 29.630 135 94 1 12 146 8 141 8.60e-16 76.6
MS.gene67155.t1 AT3G58290 27.941 136 88 3 12 138 10 144 5.73e-15 74.3
MS.gene67155.t1 AT2G01790 30.952 126 86 1 16 140 11 136 7.80e-15 73.9
MS.gene67155.t1 AT3G17380 28.467 137 93 2 17 148 25 161 8.93e-15 74.3
MS.gene67155.t1 AT3G17380 29.457 129 89 2 13 140 175 302 2.27e-12 67.0
MS.gene67155.t1 AT3G58260 29.851 134 92 2 9 140 4 137 1.21e-14 73.9
MS.gene67155.t1 AT3G44800 31.538 130 88 1 11 140 3 131 1.35e-14 73.9
MS.gene67155.t1 AT3G58200 32.759 116 75 2 13 127 8 121 1.84e-14 73.6
MS.gene67155.t1 AT2G05420 30.075 133 84 3 15 139 11 142 2.36e-13 70.1
MS.gene67155.t1 AT3G58410 28.462 130 74 2 9 138 25 135 6.61e-13 68.9
MS.gene67155.t1 AT5G26260 26.752 157 106 4 12 159 58 214 8.54e-13 68.9
MS.gene67155.t1 AT5G52330 28.662 157 100 5 9 165 16 160 1.16e-12 68.6
MS.gene67155.t1 AT5G52330 28.662 157 100 5 9 165 16 160 1.16e-12 68.6
MS.gene67155.t1 AT5G52330 28.662 157 100 5 9 165 16 160 1.16e-12 68.6
MS.gene67155.t1 AT5G43560 30.952 126 82 3 9 134 66 186 1.90e-12 68.6
MS.gene67155.t1 AT5G43560 30.952 126 82 3 9 134 66 186 1.90e-12 68.6
MS.gene67155.t1 AT4G09780 36.290 124 75 4 13 134 214 335 4.03e-12 67.0
MS.gene67155.t1 AT5G26320 28.889 135 90 3 31 159 81 215 1.01e-11 65.5
MS.gene67155.t1 AT2G42480 33.333 129 77 5 14 138 8 131 2.64e-11 64.3
MS.gene67155.t1 AT1G31390 27.731 119 85 1 12 129 7 125 7.63e-11 62.4
MS.gene67155.t1 AT2G42460 32.374 139 90 3 8 146 4 138 9.48e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAAAGAGTTTCAATATT+TGG 0.072812 1.2:-26533280 None:intergenic
TTGCATGTTCATTATGCTTT+AGG 0.157905 1.2:+26533493 MS.gene67155:CDS
CGACCAGTTACATATATATT+TGG 0.208741 1.2:+26532682 MS.gene67155:CDS
TGCATGTTCATTATGCTTTA+GGG 0.269895 1.2:+26533494 MS.gene67155:CDS
GTAAAAGAGTTTCAATATTT+GGG 0.278091 1.2:-26533279 None:intergenic
GAAGGAGAGCATGGTAGTTC+TGG 0.285409 1.2:+26533558 MS.gene67155:CDS
TAAAACTTGAAGATCCTTAC+AGG 0.295125 1.2:-26533425 None:intergenic
GACCTTCAGGCTTTGCTGTT+AGG 0.321081 1.2:-26533252 None:intergenic
TCCGAGCCTTTCGTCCTTAG+TGG 0.329886 1.2:+26532495 MS.gene67155:CDS
ATATTTGGGCCTCGACCTTC+AGG 0.334872 1.2:-26533265 None:intergenic
GTAGATTTAGATTCTGAATT+GGG 0.350592 1.2:+26533676 MS.gene67155:CDS
GGCTTGCTCGTTCATGTCTC+TGG 0.355614 1.2:-26533404 None:intergenic
CTGCACTACTCTTCCCCTTT+GGG 0.355811 1.2:-26532658 None:intergenic
CTTACATTTGGTAGTCAAAC+TGG 0.355935 1.2:+26533205 MS.gene67155:CDS
AGTAGATTTAGATTCTGAAT+TGG 0.356087 1.2:+26533675 MS.gene67155:CDS
CAGGCTTTGCTGTTAGGACT+AGG 0.365049 1.2:-26533246 None:intergenic
GTGAATGATACTTGTATTGT+TGG 0.377087 1.2:+26533112 MS.gene67155:CDS
ACTGCACTACTCTTCCCCTT+TGG 0.377114 1.2:-26532659 None:intergenic
AATTTAAATATGATATTACT+TGG 0.390669 1.2:+26533464 MS.gene67155:CDS
ATCCCTTCATCCCTTACATT+TGG 0.392215 1.2:+26533193 MS.gene67155:CDS
CCTCCAAATATATATGTAAC+TGG 0.394155 1.2:-26532685 None:intergenic
GAGTCGGTGTTTGCTGCATT+AGG 0.394888 1.2:+26533349 MS.gene67155:CDS
AGAGACTTGTTGAAATCAAA+AGG 0.412312 1.2:+26533643 MS.gene67155:CDS
GGTAGTTCTGGAGCTCGAAT+TGG 0.424459 1.2:+26533570 MS.gene67155:CDS
CTACCAAATGTAAGGGATGA+AGG 0.432592 1.2:-26533196 None:intergenic
TCAGTGCAAGTCAGGATGAC+TGG 0.435022 1.2:+26533032 MS.gene67155:CDS
AAGATATGTGGAGAAAGCTT+TGG 0.447649 1.2:+26533522 MS.gene67155:CDS
CATGAACGAGCAAGCCTGTA+AGG 0.453721 1.2:+26533411 MS.gene67155:CDS
CCACGAGTTCAGTGCAAGTC+AGG 0.455144 1.2:+26533024 MS.gene67155:CDS
TGGTAGTCAAACTGGTCAAA+TGG 0.456911 1.2:+26533213 MS.gene67155:CDS
CAGTTTGACTACCAAATGTA+AGG 0.457602 1.2:-26533204 None:intergenic
TTAGTTGAGCTTTGTCATCC+TGG 0.458249 1.2:+26533076 MS.gene67155:CDS
TTGAGCTTTGTCATCCTGGA+AGG 0.471871 1.2:+26533080 MS.gene67155:CDS
AGGATTCTTCTCTTCCCAAA+GGG 0.475030 1.2:+26532644 MS.gene67155:CDS
GAGCTTTGTCATCCTGGAAG+GGG 0.486742 1.2:+26533082 MS.gene67155:CDS
GCAAACACCGACTCTGCGTC+AGG 0.489005 1.2:-26533340 None:intergenic
TGAGCTTTGTCATCCTGGAA+GGG 0.489024 1.2:+26533081 MS.gene67155:CDS
TTAGATTCTGAATTGGGATG+TGG 0.494944 1.2:+26533682 MS.gene67155:CDS
TAGATTCTGAATTGGGATGT+GGG 0.496207 1.2:+26533683 MS.gene67155:CDS
TTTGGAGGCTGAAAAGTTGA+AGG 0.501303 1.2:+26533540 MS.gene67155:CDS
CAGTGCAAGTCAGGATGACT+GGG 0.502643 1.2:+26533033 MS.gene67155:CDS
GAATTGGGATGTGGGAGTTG+TGG 0.508997 1.2:+26533691 MS.gene67155:CDS
GACAACAGAACAATCACAAA+AGG 0.511099 1.2:+26532785 MS.gene67155:CDS
CCAGTTACATATATATTTGG+AGG 0.512397 1.2:+26532685 MS.gene67155:CDS
ATATGTGGAGAAAGCTTTGG+AGG 0.523862 1.2:+26533525 MS.gene67155:CDS
TCAAACTGGTCAAATGGAAG+TGG 0.534780 1.2:+26533219 MS.gene67155:CDS
GCTCGAATTGGAAAGGCTAA+AGG 0.542142 1.2:+26533582 MS.gene67155:CDS
AGCTTTGTCATCCTGGAAGG+GGG 0.555993 1.2:+26533083 MS.gene67155:CDS
TACCAAATGTAAGGGATGAA+GGG 0.561982 1.2:-26533195 None:intergenic
GTCCTAACAGCAAAGCCTGA+AGG 0.568118 1.2:+26533250 MS.gene67155:CDS
CTTACCATGGATATCCACTA+AGG 0.579500 1.2:-26532509 None:intergenic
GAAGACTGCTAATATGTCTG+AGG 0.579958 1.2:+26532712 MS.gene67155:CDS
TGAAAAGTTGAAGGAGAGCA+TGG 0.580493 1.2:+26533549 MS.gene67155:CDS
CCTGACTTGCACTGAACTCG+TGG 0.580933 1.2:-26533024 None:intergenic
TGATACTTGTATTGTTGGTG+TGG 0.581139 1.2:+26533117 MS.gene67155:CDS
ACAGCAAAGCCTGAAGGTCG+AGG 0.581162 1.2:+26533256 MS.gene67155:CDS
TCCACTAAGGACGAAAGGCT+CGG 0.589489 1.2:-26532496 None:intergenic
CTGCTAATATGTCTGAGGGA+TGG 0.590956 1.2:+26532717 MS.gene67155:CDS
GAGGATTCTTCTCTTCCCAA+AGG 0.594512 1.2:+26532643 MS.gene67155:CDS
TTCTGGAGCTCGAATTGGAA+AGG 0.594903 1.2:+26533575 MS.gene67155:CDS
TGCTGTATTCAATCAAGTCG+AGG 0.599719 1.2:+26532763 MS.gene67155:CDS
TCGTCCTTAGTGGATATCCA+TGG 0.600369 1.2:+26532505 MS.gene67155:CDS
TAAAGATCCTGACGCAGAGT+CGG 0.611168 1.2:+26533333 MS.gene67155:CDS
TAACTTATCAACATTCAAGT+GGG 0.611555 1.2:-26532469 None:intergenic
GGATATCCACTAAGGACGAA+AGG 0.618904 1.2:-26532501 None:intergenic
CTCGAGTTTACAGAAATGGA+GGG 0.619993 1.2:+26532390 None:intergenic
AAGACTGCTAATATGTCTGA+GGG 0.621113 1.2:+26532713 MS.gene67155:CDS
TTCTTCACTAGTTTCTACTG+AGG 0.622627 1.2:+26533306 MS.gene67155:CDS
AGTTTGACTACCAAATGTAA+GGG 0.630632 1.2:-26533203 None:intergenic
ATAACTTATCAACATTCAAG+TGG 0.634087 1.2:-26532470 None:intergenic
GGATTCTTCTCTTCCCAAAG+GGG 0.641187 1.2:+26532645 MS.gene67155:CDS
GGAAAGGCTAAAGGTCAAGT+CGG 0.643411 1.2:+26533591 MS.gene67155:CDS
AGATATTTGAGAAGTTCACA+TGG 0.666468 1.2:+26532430 MS.gene67155:CDS
AGTGCAAGTCAGGATGACTG+GGG 0.764553 1.2:+26533034 MS.gene67155:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAATATGATATTACT+TGG + chr1.2:26533464-26533483 MS.gene67155:CDS 10.0%
!! GTAAAAGAGTTTCAATATTT+GGG - chr1.2:26533282-26533301 None:intergenic 20.0%
!! TGTAAAAGAGTTTCAATATT+TGG - chr1.2:26533283-26533302 None:intergenic 20.0%
!!! ATTTGTGTTTTGATCTTATT+TGG + chr1.2:26532609-26532628 MS.gene67155:intron 20.0%
! AGTAGATTTAGATTCTGAAT+TGG + chr1.2:26533675-26533694 MS.gene67155:CDS 25.0%
! ATAACTTATCAACATTCAAG+TGG - chr1.2:26532473-26532492 None:intergenic 25.0%
! GTAGATTTAGATTCTGAATT+GGG + chr1.2:26533676-26533695 MS.gene67155:CDS 25.0%
! TAACTTATCAACATTCAAGT+GGG - chr1.2:26532472-26532491 None:intergenic 25.0%
! TAACTTCTGCAAAATTATAG+TGG - chr1.2:26532896-26532915 None:intergenic 25.0%
! TTCATTCAAATAACTTACCA+TGG - chr1.2:26532525-26532544 None:intergenic 25.0%
! TTTAGGGATAAAAAGATATG+TGG + chr1.2:26533510-26533529 MS.gene67155:CDS 25.0%
!!! ATCTTATTTGGTTTTGTTGT+AGG + chr1.2:26532621-26532640 MS.gene67155:intron 25.0%
!!! TAAGGATCTTCAAGTTTTAT+GGG + chr1.2:26533429-26533448 MS.gene67155:CDS 25.0%
AGATATTTGAGAAGTTCACA+TGG + chr1.2:26532430-26532449 MS.gene67155:CDS 30.0%
AGTTTGACTACCAAATGTAA+GGG - chr1.2:26533206-26533225 None:intergenic 30.0%
CCAGTTACATATATATTTGG+AGG + chr1.2:26532685-26532704 MS.gene67155:CDS 30.0%
CCTCCAAATATATATGTAAC+TGG - chr1.2:26532688-26532707 None:intergenic 30.0%
CGACCAGTTACATATATATT+TGG + chr1.2:26532682-26532701 MS.gene67155:CDS 30.0%
GTGAATGATACTTGTATTGT+TGG + chr1.2:26533112-26533131 MS.gene67155:CDS 30.0%
TAAAACTTGAAGATCCTTAC+AGG - chr1.2:26533428-26533447 None:intergenic 30.0%
TGCATGTTCATTATGCTTTA+GGG + chr1.2:26533494-26533513 MS.gene67155:CDS 30.0%
TTAATCTATATATCCACCAG+TGG - chr1.2:26532557-26532576 None:intergenic 30.0%
TTGCATGTTCATTATGCTTT+AGG + chr1.2:26533493-26533512 MS.gene67155:CDS 30.0%
! GTGTATGTTTGATTTCATTG+TGG + chr1.2:26532847-26532866 MS.gene67155:intron 30.0%
!! AGAGACTTGTTGAAATCAAA+AGG + chr1.2:26533643-26533662 MS.gene67155:CDS 30.0%
!! GTAAGGATCTTCAAGTTTTA+TGG + chr1.2:26533428-26533447 MS.gene67155:CDS 30.0%
!!! TTATTTGGTTTTGTTGTAGG+AGG + chr1.2:26532624-26532643 MS.gene67155:intron 30.0%
AAGACTGCTAATATGTCTGA+GGG + chr1.2:26532713-26532732 MS.gene67155:CDS 35.0%
AAGATATGTGGAGAAAGCTT+TGG + chr1.2:26533522-26533541 MS.gene67155:CDS 35.0%
CACTTAATCACTTTGCAAGA+CGG - chr1.2:26532830-26532849 None:intergenic 35.0%
CAGTTTGACTACCAAATGTA+AGG - chr1.2:26533207-26533226 None:intergenic 35.0%
GAATGAATCACAATTTCCAC+TGG + chr1.2:26532538-26532557 MS.gene67155:intron 35.0%
GACAACAGAACAATCACAAA+AGG + chr1.2:26532785-26532804 MS.gene67155:CDS 35.0%
TACCAAATGTAAGGGATGAA+GGG - chr1.2:26533198-26533217 None:intergenic 35.0%
TAGATTCTGAATTGGGATGT+GGG + chr1.2:26533683-26533702 MS.gene67155:CDS 35.0%
TGATACTTGTATTGTTGGTG+TGG + chr1.2:26533117-26533136 MS.gene67155:CDS 35.0%
TTAGATTCTGAATTGGGATG+TGG + chr1.2:26533682-26533701 MS.gene67155:CDS 35.0%
! CTTACATTTGGTAGTCAAAC+TGG + chr1.2:26533205-26533224 MS.gene67155:CDS 35.0%
! TTCTTCACTAGTTTCTACTG+AGG + chr1.2:26533306-26533325 MS.gene67155:CDS 35.0%
AGGATTCTTCTCTTCCCAAA+GGG + chr1.2:26532644-26532663 MS.gene67155:CDS 40.0%
ATCCCTTCATCCCTTACATT+TGG + chr1.2:26533193-26533212 MS.gene67155:CDS 40.0%
CTACCAAATGTAAGGGATGA+AGG - chr1.2:26533199-26533218 None:intergenic 40.0%
CTTACCATGGATATCCACTA+AGG - chr1.2:26532512-26532531 None:intergenic 40.0%
GAAGACTGCTAATATGTCTG+AGG + chr1.2:26532712-26532731 MS.gene67155:CDS 40.0%
TCAAACTGGTCAAATGGAAG+TGG + chr1.2:26533219-26533238 MS.gene67155:CDS 40.0%
TGAAAAGTTGAAGGAGAGCA+TGG + chr1.2:26533549-26533568 MS.gene67155:CDS 40.0%
TGAATCACAATTTCCACTGG+TGG + chr1.2:26532541-26532560 MS.gene67155:intron 40.0%
TGCTGTATTCAATCAAGTCG+AGG + chr1.2:26532763-26532782 MS.gene67155:CDS 40.0%
TGGTAGTCAAACTGGTCAAA+TGG + chr1.2:26533213-26533232 MS.gene67155:CDS 40.0%
TTAATCACTTTGCAAGACGG+AGG - chr1.2:26532827-26532846 None:intergenic 40.0%
TTTGGAGGCTGAAAAGTTGA+AGG + chr1.2:26533540-26533559 MS.gene67155:CDS 40.0%
! ATATGTGGAGAAAGCTTTGG+AGG + chr1.2:26533525-26533544 MS.gene67155:CDS 40.0%
! TTAGTTGAGCTTTGTCATCC+TGG + chr1.2:26533076-26533095 MS.gene67155:CDS 40.0%
!! GGATCTTCAAGTTTTATGGG+AGG + chr1.2:26533432-26533451 MS.gene67155:CDS 40.0%
!!! CTCTGGCTTTTCTAGTCTTA+AGG - chr1.2:26533390-26533409 None:intergenic 40.0%
CTGCTAATATGTCTGAGGGA+TGG + chr1.2:26532717-26532736 MS.gene67155:CDS 45.0%
GAGGATTCTTCTCTTCCCAA+AGG + chr1.2:26532643-26532662 MS.gene67155:CDS 45.0%
GCTCGAATTGGAAAGGCTAA+AGG + chr1.2:26533582-26533601 MS.gene67155:CDS 45.0%
GGAAAGGCTAAAGGTCAAGT+CGG + chr1.2:26533591-26533610 MS.gene67155:CDS 45.0%
GGATATCCACTAAGGACGAA+AGG - chr1.2:26532504-26532523 None:intergenic 45.0%
GGATTCTTCTCTTCCCAAAG+GGG + chr1.2:26532645-26532664 MS.gene67155:CDS 45.0%
TAAAGATCCTGACGCAGAGT+CGG + chr1.2:26533333-26533352 MS.gene67155:CDS 45.0%
TTCACAATAAACCCCCTTCC+AGG - chr1.2:26533097-26533116 None:intergenic 45.0%
! TCGTCCTTAGTGGATATCCA+TGG + chr1.2:26532505-26532524 MS.gene67155:CDS 45.0%
! TGAGCTTTGTCATCCTGGAA+GGG + chr1.2:26533081-26533100 MS.gene67155:CDS 45.0%
! TTGAGCTTTGTCATCCTGGA+AGG + chr1.2:26533080-26533099 MS.gene67155:CDS 45.0%
!! TTCTGGAGCTCGAATTGGAA+AGG + chr1.2:26533575-26533594 MS.gene67155:CDS 45.0%
ACTGCACTACTCTTCCCCTT+TGG - chr1.2:26532662-26532681 None:intergenic 50.0%
ACTTTGCAAGACGGAGGAAG+AGG - chr1.2:26532821-26532840 None:intergenic 50.0%
AGTGCAAGTCAGGATGACTG+GGG + chr1.2:26533034-26533053 MS.gene67155:CDS 50.0%
ATATTTGGGCCTCGACCTTC+AGG - chr1.2:26533268-26533287 None:intergenic 50.0%
CAGTGCAAGTCAGGATGACT+GGG + chr1.2:26533033-26533052 MS.gene67155:CDS 50.0%
CATGAACGAGCAAGCCTGTA+AGG + chr1.2:26533411-26533430 MS.gene67155:CDS 50.0%
CTGCACTACTCTTCCCCTTT+GGG - chr1.2:26532661-26532680 None:intergenic 50.0%
GAATTGGGATGTGGGAGTTG+TGG + chr1.2:26533691-26533710 MS.gene67155:CDS 50.0%
GTCCTAACAGCAAAGCCTGA+AGG + chr1.2:26533250-26533269 MS.gene67155:CDS 50.0%
GTGGCTACGCAAGAGTCATA+TGG + chr1.2:26532866-26532885 MS.gene67155:intron 50.0%
TCAGTGCAAGTCAGGATGAC+TGG + chr1.2:26533032-26533051 MS.gene67155:CDS 50.0%
TCCACTAAGGACGAAAGGCT+CGG - chr1.2:26532499-26532518 None:intergenic 50.0%
! AGCTTTGTCATCCTGGAAGG+GGG + chr1.2:26533083-26533102 MS.gene67155:CDS 50.0%
! GAAGGAGAGCATGGTAGTTC+TGG + chr1.2:26533558-26533577 MS.gene67155:CDS 50.0%
! GAGCTTTGTCATCCTGGAAG+GGG + chr1.2:26533082-26533101 MS.gene67155:CDS 50.0%
! GAGTCGGTGTTTGCTGCATT+AGG + chr1.2:26533349-26533368 MS.gene67155:CDS 50.0%
!! CAGGCTTTGCTGTTAGGACT+AGG - chr1.2:26533249-26533268 None:intergenic 50.0%
!! CTGAACTCGTGGCTAGTTTC+TGG - chr1.2:26533016-26533035 None:intergenic 50.0%
!! GACCTTCAGGCTTTGCTGTT+AGG - chr1.2:26533255-26533274 None:intergenic 50.0%
!! GGTAGTTCTGGAGCTCGAAT+TGG + chr1.2:26533570-26533589 MS.gene67155:CDS 50.0%
ACAGCAAAGCCTGAAGGTCG+AGG + chr1.2:26533256-26533275 MS.gene67155:CDS 55.0%
CCACGAGTTCAGTGCAAGTC+AGG + chr1.2:26533024-26533043 MS.gene67155:CDS 55.0%
TCCGAGCCTTTCGTCCTTAG+TGG + chr1.2:26532495-26532514 MS.gene67155:CDS 55.0%
! CCTGACTTGCACTGAACTCG+TGG - chr1.2:26533027-26533046 None:intergenic 55.0%
! GGCTTGCTCGTTCATGTCTC+TGG - chr1.2:26533407-26533426 None:intergenic 55.0%
!! GCAAACACCGACTCTGCGTC+AGG - chr1.2:26533343-26533362 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 26532405 26533720 26532405 ID=MS.gene67155
chr1.2 mRNA 26532405 26533720 26532405 ID=MS.gene67155.t1;Parent=MS.gene67155
chr1.2 exon 26532405 26532526 26532405 ID=MS.gene67155.t1.exon1;Parent=MS.gene67155.t1
chr1.2 CDS 26532405 26532526 26532405 ID=cds.MS.gene67155.t1;Parent=MS.gene67155.t1
chr1.2 exon 26532643 26532806 26532643 ID=MS.gene67155.t1.exon2;Parent=MS.gene67155.t1
chr1.2 CDS 26532643 26532806 26532643 ID=cds.MS.gene67155.t1;Parent=MS.gene67155.t1
chr1.2 exon 26533017 26533720 26533017 ID=MS.gene67155.t1.exon3;Parent=MS.gene67155.t1
chr1.2 CDS 26533017 26533720 26533017 ID=cds.MS.gene67155.t1;Parent=MS.gene67155.t1
Gene Sequence

>MS.gene67155

ATGGAGGGTCAAGAAACTAGTGTTGAGATATTTGAGAAGTTCACATGGAAGATTGAAAATTTTTCCCACTTGAATGTTGATAAGTTATACTCCGAGCCTTTCGTCCTTAGTGGATATCCATGGTAAGTTATTTGAATGAATCACAATTTCCACTGGTGGATATATAGATTAATAGATTATACACTCTTTGACATGATTTATTACATTTGTGTTTTGATCTTATTTGGTTTTGTTGTAGGAGGATTCTTCTCTTCCCAAAGGGGAAGAGTAGTGCAGTCGACCAGTTACATATATATTTGGAGGCTATGAAGACTGCTAATATGTCTGAGGGATGGAAGAGAAATGCGAAATTAAAGTTTGCTGTATTCAATCAAGTCGAGGACAACAGAACAATCACAAAAGGTTTTCTTTCTCCTCTTCCTCCGTCTTGCAAAGTGATTAAGTGTATGTTTGATTTCATTGTGGCTACGCAAGAGTCATATGGTGATCCACTATAATTTTGCAGAAGTTACAAAGTGAAAAAGAGACTGATGTGATATAAATGATAGTAATTTGACTCAAGTAAGTAAACAAAAAGAAACTAAATTTGACTCTTATGCTTTATCTTGCCAGAAACTAGCCACGAGTTCAGTGCAAGTCAGGATGACTGGGGATATTCTTCTTTCATGACATTAGTTGAGCTTTGTCATCCTGGAAGGGGGTTTATTGTGAATGATACTTGTATTGTTGGTGTGGAAATTTTTGTTTGTAAGTCAACTCATGAGAAACGAATAAATCAAATCGTTAACATCCCTTCATCCCTTACATTTGGTAGTCAAACTGGTCAAATGGAAGTGGAGCTCCTAGTCCTAACAGCAAAGCCTGAAGGTCGAGGCCCAAATATTGAAACTCTTTTACAAGTTTCTTCACTAGTTTCTACTGAGGCTACTAAAGATCCTGACGCAGAGTCGGTGTTTGCTGCATTAGGTAGAGTTATGTATTTCCTTAAGACTAGAAAAGCCAGAGACATGAACGAGCAAGCCTGTAAGGATCTTCAAGTTTTATGGGAGGAACTTGCAAAATTTAAATATGATATTACTTGGCTTGAATTGCATGTTCATTATGCTTTAGGGATAAAAAGATATGTGGAGAAAGCTTTGGAGGCTGAAAAGTTGAAGGAGAGCATGGTAGTTCTGGAGCTCGAATTGGAAAGGCTAAAGGTCAAGTCGGTTGCAACTAAGATGAATCTTGACATAGAAAGAGACTTGTTGAAATCAAAAGGTTTCAAAGAAGTAGATTTAGATTCTGAATTGGGATGTGGGAGTTGTGGACCATAG
Protein sequence

>MS.gene67155.t1

MEGQETSVEIFEKFTWKIENFSHLNVDKLYSEPFVLSGYPWRILLFPKGKSSAVDQLHIYLEAMKTANMSEGWKRNAKLKFAVFNQVEDNRTITKETSHEFSASQDDWGYSSFMTLVELCHPGRGFIVNDTCIVGVEIFVCKSTHEKRINQIVNIPSSLTFGSQTGQMEVELLVLTAKPEGRGPNIETLLQVSSLVSTEATKDPDAESVFAALGRVMYFLKTRKARDMNEQACKDLQVLWEELAKFKYDITWLELHVHYALGIKRYVEKALEAEKLKESMVVLELELERLKVKSVATKMNLDIERDLLKSKGFKEVDLDSELGCGSCGP