Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71890.t1 | XP_003608793.1 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 1.30E-57 | 232.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71890.t1 | Q84W04 | 64.2 | 134 | 42 | 1 | 1 | 128 | 1 | 134 | 7.1e-44 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71890.t1 | G7JK78 | 86.1 | 137 | 13 | 1 | 1 | 131 | 1 | 137 | 9.6e-58 | 232.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene71890 | -0.815199 | 1.04E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene71890 | -0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene71890 | -0.811955 | 5.40E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene71890 | -0.825672 | 4.13E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene71890 | -0.83828 | 3.16E-57 | -1.69E-46 |
| MS.gene049382 | MS.gene71890 | -0.802317 | 5.94E-49 | -1.69E-46 |
| MS.gene049599 | MS.gene71890 | 0.820524 | 6.55E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene71890 | -0.837549 | 4.87E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene71890 | -0.831614 | 1.51E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene71890 | -0.827076 | 1.91E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene71890 | -0.831488 | 1.62E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene71890 | -0.831753 | 1.40E-55 | -1.69E-46 |
| MS.gene050319 | MS.gene71890 | 0.821015 | 5.05E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene71890 | 0.830379 | 3.04E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene71890 | 0.829004 | 6.56E-55 | -1.69E-46 |
| MS.gene050629 | MS.gene71890 | 0.824522 | 7.71E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene71890 | -0.824078 | 9.81E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene71890 | -0.819608 | 1.06E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene71890 | -0.820008 | 8.60E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene71890 | 0.838268 | 3.18E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene71890 | -0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene71890 | -0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene71890 | -0.818738 | 1.68E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene71890 | -0.804008 | 2.65E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene71890 | -0.807693 | 4.46E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene71890 | -0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene71890 | -0.821173 | 4.65E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene71890 | -0.808263 | 3.38E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene71890 | -0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene71890 | -0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene71890 | -0.810419 | 1.16E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene71890 | -0.841564 | 4.40E-58 | -1.69E-46 |
| MS.gene054379 | MS.gene71890 | -0.843667 | 1.22E-58 | -1.69E-46 |
| MS.gene054473 | MS.gene71890 | -0.807719 | 4.41E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene71890 | -0.8552 | 7.40E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene71890 | -0.818152 | 2.28E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene71890 | -0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene71890 | -0.806966 | 6.36E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene71890 | 0.827849 | 1.25E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene71890 | -0.80668 | 7.31E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene71890 | -0.810933 | 9.01E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene71890 | -0.805308 | 1.42E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene71890 | -0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene71890 | -0.807084 | 6.01E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene71890 | -0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene71890 | -0.817567 | 3.08E-52 | -1.69E-46 |
| MS.gene060084 | MS.gene71890 | -0.80192 | 7.17E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene71890 | 0.800156 | 1.65E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene71890 | -0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene71890 | -0.847626 | 1.03E-59 | -1.69E-46 |
| MS.gene060685 | MS.gene71890 | -0.838927 | 2.15E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene71890 | -0.818402 | 2.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71890.t1 | MTR_4g102010 | 91.971 | 137 | 5 | 1 | 1 | 131 | 1 | 137 | 4.64e-87 | 249 |
| MS.gene71890.t1 | MTR_5g011690 | 63.504 | 137 | 44 | 1 | 1 | 131 | 1 | 137 | 2.58e-61 | 184 |
| MS.gene71890.t1 | MTR_7g092530 | 45.217 | 115 | 58 | 1 | 19 | 128 | 27 | 141 | 7.78e-29 | 102 |
| MS.gene71890.t1 | MTR_0311s0030 | 43.548 | 124 | 63 | 2 | 3 | 119 | 4 | 127 | 2.34e-27 | 98.6 |
| MS.gene71890.t1 | MTR_7g074930 | 43.902 | 82 | 40 | 1 | 1 | 76 | 1 | 82 | 3.21e-17 | 72.4 |
| MS.gene71890.t1 | MTR_0311s0030 | 44.048 | 84 | 40 | 2 | 3 | 79 | 4 | 87 | 1.02e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71890.t1 | AT1G12390 | 67.164 | 134 | 38 | 1 | 1 | 128 | 1 | 134 | 4.67e-62 | 186 |
| MS.gene71890.t1 | AT1G12340 | 70.909 | 110 | 32 | 0 | 19 | 128 | 17 | 126 | 3.71e-56 | 171 |
| MS.gene71890.t1 | AT1G62880 | 64.925 | 134 | 41 | 1 | 1 | 128 | 1 | 134 | 5.05e-56 | 171 |
| MS.gene71890.t1 | AT4G12090 | 48.507 | 134 | 63 | 1 | 1 | 128 | 1 | 134 | 2.26e-44 | 142 |
| MS.gene71890.t1 | AT3G12180 | 39.231 | 130 | 73 | 1 | 3 | 126 | 4 | 133 | 1.03e-30 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTATTCCTCTCCTTATTT+TGG | 0.153767 | 8.3:+19413841 | MS.gene71890:CDS |
| TCAAGTCACTTACCAAAATA+AGG | 0.225877 | 8.3:-19413853 | None:intergenic |
| ATAAATAAGGATTACAATTA+AGG | 0.272852 | 8.3:-19411688 | None:intergenic |
| GGATTACAATTAAGGCAATA+AGG | 0.316976 | 8.3:-19411680 | None:intergenic |
| TGCGGTTTCTACCTTGTAAC+AGG | 0.332875 | 8.3:+19412002 | MS.gene71890:CDS |
| TGCATCTCGAATAAACAAAA+TGG | 0.334517 | 8.3:+19411947 | MS.gene71890:CDS |
| ATTCGAGATGCAGAATCATA+TGG | 0.395869 | 8.3:-19411936 | None:intergenic |
| ACCAAAATAAGGAGAGGAAT+AGG | 0.409964 | 8.3:-19413842 | None:intergenic |
| GATTACAATTAAGGCAATAA+GGG | 0.439401 | 8.3:-19411679 | None:intergenic |
| TGTAACAGGACACTGGGTTA+TGG | 0.459940 | 8.3:+19412016 | MS.gene71890:CDS |
| AGATATTCAACATGCTCCCT+TGG | 0.463924 | 8.3:+19413775 | MS.gene71890:CDS |
| ATTATTTCAGTTAATGTGCC+TGG | 0.465076 | 8.3:+19411887 | MS.gene71890:intron |
| GATTTATATAATCAAATTCA+AGG | 0.470288 | 8.3:-19411914 | None:intergenic |
| CAGGTTGATCTACACATCAT+TGG | 0.489610 | 8.3:+19413939 | MS.gene71890:intron |
| GATATTCAACATGCTCCCTT+GGG | 0.497374 | 8.3:+19413776 | MS.gene71890:CDS |
| TAAGGCAATAAGGGTGAAGA+AGG | 0.500668 | 8.3:-19411670 | None:intergenic |
| AATCAAATTCAAGGTCTGCC+AGG | 0.521481 | 8.3:-19411905 | None:intergenic |
| GTACAGTCAAGGAAAGCATC+TGG | 0.522881 | 8.3:+19413740 | MS.gene71890:CDS |
| CTACCTTGTAACAGGACACT+GGG | 0.524936 | 8.3:+19412010 | MS.gene71890:CDS |
| TCTACCTTGTAACAGGACAC+TGG | 0.526257 | 8.3:+19412009 | MS.gene71890:CDS |
| TAACCCAGTGTCCTGTTACA+AGG | 0.527314 | 8.3:-19412013 | None:intergenic |
| CTATAATTGTAGTAGAGGTA+AGG | 0.555129 | 8.3:-19412053 | None:intergenic |
| ACAATCTATAATTGTAGTAG+AGG | 0.566636 | 8.3:-19412058 | None:intergenic |
| GTATGGCTGATATATTCGCT+TGG | 0.579050 | 8.3:+19411640 | None:intergenic |
| TCCCTTGGGAAAAGAAGCAA+CGG | 0.596591 | 8.3:+19413790 | MS.gene71890:CDS |
| TTACAAGGTAGAAACCGCAC+AGG | 0.623085 | 8.3:-19411998 | None:intergenic |
| GCAGCTACTGTGATATACTC+AGG | 0.626709 | 8.3:-19411975 | None:intergenic |
| TCACTTACCAAAATAAGGAG+AGG | 0.652566 | 8.3:-19413848 | None:intergenic |
| ACTCTGATCAGGTACAGTCA+AGG | 0.665524 | 8.3:+19413729 | MS.gene71890:intron |
| ATCACAGTAGCTGCCCTGTG+CGG | 0.685904 | 8.3:+19411984 | MS.gene71890:CDS |
| TACAAGGTAGAAACCGCACA+GGG | 0.693755 | 8.3:-19411997 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTATAATTTTTTTGT+AGG | + | chr8.3:19412772-19412791 | MS.gene71890:intron | 10.0% |
| !! | AAGTTGACTAAAAATAAAAA+GGG | - | chr8.3:19411751-19411770 | None:intergenic | 15.0% |
| !! | ATAAATAAGGATTACAATTA+AGG | - | chr8.3:19411691-19411710 | None:intergenic | 15.0% |
| !! | GATTTATATAATCAAATTCA+AGG | - | chr8.3:19411917-19411936 | None:intergenic | 15.0% |
| !! | TAAAAATAGAGGATTAATTA+AGG | + | chr8.3:19412872-19412891 | MS.gene71890:intron | 15.0% |
| !!! | AAATATGACTATTATTTTGA+GGG | - | chr8.3:19413458-19413477 | None:intergenic | 15.0% |
| !!! | TCATTAACAATAAATTTTCA+TGG | - | chr8.3:19412118-19412137 | None:intergenic | 15.0% |
| !! | AAAAACAAAGCTTTACATAA+TGG | - | chr8.3:19411782-19411801 | None:intergenic | 20.0% |
| !! | AAAACAAAGCTTTACATAAT+GGG | - | chr8.3:19411781-19411800 | None:intergenic | 20.0% |
| !! | AGTTGACTAAAAATAAAAAG+GGG | - | chr8.3:19411750-19411769 | None:intergenic | 20.0% |
| !! | TTCTTAGAATCAAAATATCT+AGG | - | chr8.3:19412406-19412425 | None:intergenic | 20.0% |
| !!! | AATATGACTATTATTTTGAG+GGG | - | chr8.3:19413457-19413476 | None:intergenic | 20.0% |
| !!! | AATTGTAATCCTTATTTATC+AGG | + | chr8.3:19411692-19411711 | MS.gene71890:intron | 20.0% |
| !!! | CAAATATGACTATTATTTTG+AGG | - | chr8.3:19413459-19413478 | None:intergenic | 20.0% |
| !!! | CAAGTTGACTAAAAATAAAA+AGG | - | chr8.3:19411752-19411771 | None:intergenic | 20.0% |
| !!! | GGTTTGATTTATAAAAATAG+AGG | + | chr8.3:19412861-19412880 | MS.gene71890:intron | 20.0% |
| !!! | TATAATGTTTTTGAGAAACA+TGG | + | chr8.3:19412156-19412175 | MS.gene71890:intron | 20.0% |
| !!! | TCATACTTTATTTATTTGCA+AGG | + | chr8.3:19413108-19413127 | MS.gene71890:intron | 20.0% |
| ! | AAACAAAGCTTTACATAATG+GGG | - | chr8.3:19411780-19411799 | None:intergenic | 25.0% |
| ! | AAATACAAAGCAGTATCAAA+AGG | - | chr8.3:19413515-19413534 | None:intergenic | 25.0% |
| ! | AATACAAAGCAGTATCAAAA+GGG | - | chr8.3:19413514-19413533 | None:intergenic | 25.0% |
| ! | ACAAAAACTAAACCAATTTG+TGG | - | chr8.3:19412675-19412694 | None:intergenic | 25.0% |
| ! | ACAATCTATAATTGTAGTAG+AGG | - | chr8.3:19412061-19412080 | None:intergenic | 25.0% |
| ! | AGAACTACCAAATTGAAAAT+TGG | - | chr8.3:19412563-19412582 | None:intergenic | 25.0% |
| ! | ATGCAAGAATTGTAAGTTAA+TGG | - | chr8.3:19413910-19413929 | None:intergenic | 25.0% |
| ! | GAACTACCAAATTGAAAATT+GGG | - | chr8.3:19412562-19412581 | None:intergenic | 25.0% |
| ! | GATTACAATTAAGGCAATAA+GGG | - | chr8.3:19411682-19411701 | None:intergenic | 25.0% |
| ! | GTTGACTAAAAATAAAAAGG+GGG | - | chr8.3:19411749-19411768 | None:intergenic | 25.0% |
| ! | TAATAACAAATACTGTTACC+AGG | - | chr8.3:19413710-19413729 | None:intergenic | 25.0% |
| ! | TACAAAAATTGAGATGATGA+TGG | - | chr8.3:19413006-19413025 | None:intergenic | 25.0% |
| ! | TATAAATCAAACCATGACAT+GGG | - | chr8.3:19412854-19412873 | None:intergenic | 25.0% |
| ! | TCTAGTATAATAAAGCCATA+AGG | + | chr8.3:19412649-19412668 | MS.gene71890:intron | 25.0% |
| ! | TTAAAAAAATCGAACCAATC+AGG | + | chr8.3:19412797-19412816 | MS.gene71890:intron | 25.0% |
| ! | TTATAAATCAAACCATGACA+TGG | - | chr8.3:19412855-19412874 | None:intergenic | 25.0% |
| !! | AACTTTTATGCTGATATAGA+TGG | + | chr8.3:19413549-19413568 | MS.gene71890:intron | 25.0% |
| !! | ATAAATATCACTTCTTTTGC+TGG | - | chr8.3:19412912-19412931 | None:intergenic | 25.0% |
| !! | CAATAGCTGTAATTGTATTT+TGG | + | chr8.3:19413084-19413103 | MS.gene71890:intron | 25.0% |
| !! | TTTAGCTCAATAATTCAACT+GGG | + | chr8.3:19411800-19411819 | MS.gene71890:intron | 25.0% |
| !!! | TATTTGTTATTACTCTGATC+AGG | + | chr8.3:19413718-19413737 | MS.gene71890:intron | 25.0% |
| !!! | TTTTAGCTCAATAATTCAAC+TGG | + | chr8.3:19411799-19411818 | MS.gene71890:intron | 25.0% |
| AAGATAACCAAACAACAAAG+TGG | - | chr8.3:19412590-19412609 | None:intergenic | 30.0% | |
| AATAAAAAGGGGGAAAAGAA+TGG | - | chr8.3:19411739-19411758 | None:intergenic | 30.0% | |
| AATTAGTCATTGTTTGCACT+CGG | + | chr8.3:19412183-19412202 | MS.gene71890:intron | 30.0% | |
| ACCATGATAGCTTAATAAAC+TGG | + | chr8.3:19413667-19413686 | MS.gene71890:intron | 30.0% | |
| ACTTACAATTCTTGCATTTG+CGG | + | chr8.3:19413913-19413932 | MS.gene71890:intron | 30.0% | |
| AGAGTTTGACCTGATAAATA+AGG | - | chr8.3:19411704-19411723 | None:intergenic | 30.0% | |
| ATAAAAAGGGGGAAAAGAAT+GGG | - | chr8.3:19411738-19411757 | None:intergenic | 30.0% | |
| ATTATTTCAGTTAATGTGCC+TGG | + | chr8.3:19411887-19411906 | MS.gene71890:intron | 30.0% | |
| ATTTGGATCTTGGCATTATT+CGG | + | chr8.3:19412237-19412256 | MS.gene71890:intron | 30.0% | |
| CTATAATTGTAGTAGAGGTA+AGG | - | chr8.3:19412056-19412075 | None:intergenic | 30.0% | |
| GGATTACAATTAAGGCAATA+AGG | - | chr8.3:19411683-19411702 | None:intergenic | 30.0% | |
| GTAGTACTCAGTTTATGTAA+AGG | + | chr8.3:19412746-19412765 | MS.gene71890:intron | 30.0% | |
| TACAATTACAGCTATTGCAT+TGG | - | chr8.3:19413081-19413100 | None:intergenic | 30.0% | |
| TCAAGTCACTTACCAAAATA+AGG | - | chr8.3:19413856-19413875 | None:intergenic | 30.0% | |
| TCCAGTTTATTAAGCTATCA+TGG | - | chr8.3:19413671-19413690 | None:intergenic | 30.0% | |
| TGAGTTAGAAATTTGGATCT+TGG | + | chr8.3:19412227-19412246 | MS.gene71890:intron | 30.0% | |
| TGCATCTCGAATAAACAAAA+TGG | + | chr8.3:19411947-19411966 | MS.gene71890:CDS | 30.0% | |
| TTGGTAAGTGACTTGAAAAA+AGG | + | chr8.3:19413860-19413879 | MS.gene71890:intron | 30.0% | |
| ! | AAATCTCATCCATGTTTTCT+GGG | + | chr8.3:19413336-19413355 | MS.gene71890:intron | 30.0% |
| ! | ATTCTAAGAAACTTCTTCAC+GGG | + | chr8.3:19412416-19412435 | MS.gene71890:intron | 30.0% |
| ! | GATTCTAAGAAACTTCTTCA+CGG | + | chr8.3:19412415-19412434 | MS.gene71890:intron | 30.0% |
| ! | GGTAGTTTGAGTTAGAAATT+TGG | + | chr8.3:19412220-19412239 | MS.gene71890:intron | 30.0% |
| ! | GTTCAACCCAATTTTCAATT+TGG | + | chr8.3:19412553-19412572 | MS.gene71890:intron | 30.0% |
| ! | TAAATCTCATCCATGTTTTC+TGG | + | chr8.3:19413335-19413354 | MS.gene71890:intron | 30.0% |
| ! | TTGAAAGAATTTTGTGTCTC+TGG | + | chr8.3:19412476-19412495 | MS.gene71890:intron | 30.0% |
| !! | ACTTTGTTGTTTGGTTATCT+TGG | + | chr8.3:19412589-19412608 | MS.gene71890:intron | 30.0% |
| !! | ATTTTTGTTTCATGCACCAA+GGG | - | chr8.3:19413052-19413071 | None:intergenic | 30.0% |
| !! | CAACAACAATAGGTCATTTT+CGG | - | chr8.3:19413396-19413415 | None:intergenic | 30.0% |
| !! | GTTTGTTGTAATTGCTAAGT+AGG | + | chr8.3:19413283-19413302 | MS.gene71890:intron | 30.0% |
| !!! | TCTTTTTCCACTTTGTTGTT+TGG | + | chr8.3:19412580-19412599 | MS.gene71890:intron | 30.0% |
| !!! | TTGGTTTGGTTTGATTTTCT+GGG | + | chr8.3:19412608-19412627 | MS.gene71890:intron | 30.0% |
| AAACTGGAATGTGCTTAGTA+TGG | + | chr8.3:19413683-19413702 | MS.gene71890:intron | 35.0% | |
| ACCAAAATAAGGAGAGGAAT+AGG | - | chr8.3:19413845-19413864 | None:intergenic | 35.0% | |
| ACTTTATAGCGCTATCAAAC+TGG | - | chr8.3:19412329-19412348 | None:intergenic | 35.0% | |
| AGAAGATCTAGAAAAGAGTG+AGG | - | chr8.3:19412703-19412722 | None:intergenic | 35.0% | |
| ATTCGAGATGCAGAATCATA+TGG | - | chr8.3:19411939-19411958 | None:intergenic | 35.0% | |
| GTTGTTTGGTTATCTTGGTT+TGG | + | chr8.3:19412594-19412613 | MS.gene71890:intron | 35.0% | |
| TCACTTACCAAAATAAGGAG+AGG | - | chr8.3:19413851-19413870 | None:intergenic | 35.0% | |
| TCATGTGTGATCAGTAGTTT+GGG | + | chr8.3:19412446-19412465 | MS.gene71890:intron | 35.0% | |
| TGCACTTCTTCACAATATCA+AGG | - | chr8.3:19413171-19413190 | None:intergenic | 35.0% | |
| TTCATGTGTGATCAGTAGTT+TGG | + | chr8.3:19412445-19412464 | MS.gene71890:intron | 35.0% | |
| TTTAGTAAGATCCCATGTCA+TGG | + | chr8.3:19412840-19412859 | MS.gene71890:intron | 35.0% | |
| ! | AATCTCATCCATGTTTTCTG+GGG | + | chr8.3:19413337-19413356 | MS.gene71890:intron | 35.0% |
| ! | CTTGGTGCATGAAACAAAAA+TGG | + | chr8.3:19413051-19413070 | MS.gene71890:intron | 35.0% |
| ! | TAAACCAATTTGTGGCCTTA+TGG | - | chr8.3:19412667-19412686 | None:intergenic | 35.0% |
| ! | TTCTAAGAAACTTCTTCACG+GGG | + | chr8.3:19412417-19412436 | MS.gene71890:intron | 35.0% |
| !! | CATTTTTGTTTCATGCACCA+AGG | - | chr8.3:19413053-19413072 | None:intergenic | 35.0% |
| !! | TCCTATTCCTCTCCTTATTT+TGG | + | chr8.3:19413841-19413860 | MS.gene71890:CDS | 35.0% |
| !!! | ACAGTTTTGGATGTGTTCAT+TGG | + | chr8.3:19413308-19413327 | MS.gene71890:intron | 35.0% |
| !!! | CTTGGTTTGGTTTGATTTTC+TGG | + | chr8.3:19412607-19412626 | MS.gene71890:intron | 35.0% |
| !!! | TGGTTTGGTTTGATTTTCTG+GGG | + | chr8.3:19412609-19412628 | MS.gene71890:intron | 35.0% |
| AAAGCCATAAGGCCACAAAT+TGG | + | chr8.3:19412660-19412679 | MS.gene71890:intron | 40.0% | |
| AATCAAATTCAAGGTCTGCC+AGG | - | chr8.3:19411908-19411927 | None:intergenic | 40.0% | |
| AGAGTTGCTGCAACAACAAT+AGG | - | chr8.3:19413406-19413425 | None:intergenic | 40.0% | |
| AGATATTCAACATGCTCCCT+TGG | + | chr8.3:19413775-19413794 | MS.gene71890:CDS | 40.0% | |
| CACTCGGATTTATGAGTGAA+TGG | + | chr8.3:19412199-19412218 | MS.gene71890:intron | 40.0% | |
| GAAAGAAGTGACAATACCCT+TGG | + | chr8.3:19413033-19413052 | MS.gene71890:intron | 40.0% | |
| GATATTCAACATGCTCCCTT+GGG | + | chr8.3:19413776-19413795 | MS.gene71890:CDS | 40.0% | |
| TAAGGCAATAAGGGTGAAGA+AGG | - | chr8.3:19411673-19411692 | None:intergenic | 40.0% | |
| TAGCGCTATAAAGTACGTGT+TGG | + | chr8.3:19412335-19412354 | MS.gene71890:intron | 40.0% | |
| ! | ATCTCATCCATGTTTTCTGG+GGG | + | chr8.3:19413338-19413357 | MS.gene71890:intron | 40.0% |
| ! | GGTATTGTCACTTCTTTCGT+TGG | - | chr8.3:19413031-19413050 | None:intergenic | 40.0% |
| ! | GTCAAGTTTGGTTCAGTTTG+AGG | - | chr8.3:19412984-19413003 | None:intergenic | 40.0% |
| ! | TAATCTGAGTACTGCTGCTA+GGG | - | chr8.3:19412944-19412963 | None:intergenic | 40.0% |
| ! | TGCTAAGTAGGCTACAGTTT+TGG | + | chr8.3:19413295-19413314 | MS.gene71890:intron | 40.0% |
| ! | TTAATCTGAGTACTGCTGCT+AGG | - | chr8.3:19412945-19412964 | None:intergenic | 40.0% |
| !! | ACGTGTTGGTTGATGTTTCA+TGG | + | chr8.3:19412349-19412368 | MS.gene71890:intron | 40.0% |
| !! | CAGGTTGATCTACACATCAT+TGG | + | chr8.3:19413939-19413958 | MS.gene71890:intron | 40.0% |
| !! | GAGATGATGATGGTCAAGTT+TGG | - | chr8.3:19412996-19413015 | None:intergenic | 40.0% |
| !! | GGGGAAAAGAATGGGTTAAA+GGG | - | chr8.3:19411730-19411749 | None:intergenic | 40.0% |
| ACTCTGATCAGGTACAGTCA+AGG | + | chr8.3:19413729-19413748 | MS.gene71890:intron | 45.0% | |
| CATATCTCCCCCAGAAAACA+TGG | - | chr8.3:19413348-19413367 | None:intergenic | 45.0% | |
| CCTGCACTCGAGTTATAAAG+CGG | - | chr8.3:19412508-19412527 | None:intergenic | 45.0% | |
| CTACCTTGTAACAGGACACT+GGG | + | chr8.3:19412010-19412029 | MS.gene71890:CDS | 45.0% | |
| GAATGTGCTTAGTATGGTCC+TGG | + | chr8.3:19413689-19413708 | MS.gene71890:intron | 45.0% | |
| GATGCGACTGCAATTGATCA+TGG | + | chr8.3:19413204-19413223 | MS.gene71890:intron | 45.0% | |
| GCAGCTACTGTGATATACTC+AGG | - | chr8.3:19411978-19411997 | None:intergenic | 45.0% | |
| GTGATCAGTAGTTTGGGTGA+GGG | + | chr8.3:19412452-19412471 | MS.gene71890:intron | 45.0% | |
| TAACCCAGTGTCCTGTTACA+AGG | - | chr8.3:19412016-19412035 | None:intergenic | 45.0% | |
| TACAAGGTAGAAACCGCACA+GGG | - | chr8.3:19412000-19412019 | None:intergenic | 45.0% | |
| TCCCTTGGGAAAAGAAGCAA+CGG | + | chr8.3:19413790-19413809 | MS.gene71890:CDS | 45.0% | |
| TCTACCTTGTAACAGGACAC+TGG | + | chr8.3:19412009-19412028 | MS.gene71890:CDS | 45.0% | |
| TGCGGTTTCTACCTTGTAAC+AGG | + | chr8.3:19412002-19412021 | MS.gene71890:CDS | 45.0% | |
| TGTAACAGGACACTGGGTTA+TGG | + | chr8.3:19412016-19412035 | MS.gene71890:CDS | 45.0% | |
| TGTGATCAGTAGTTTGGGTG+AGG | + | chr8.3:19412451-19412470 | MS.gene71890:intron | 45.0% | |
| TTACAAGGTAGAAACCGCAC+AGG | - | chr8.3:19412001-19412020 | None:intergenic | 45.0% | |
| ! | AATCTGAGTACTGCTGCTAG+GGG | - | chr8.3:19412943-19412962 | None:intergenic | 45.0% |
| !! | GGGGGAAAAGAATGGGTTAA+AGG | - | chr8.3:19411731-19411750 | None:intergenic | 45.0% |
| !! | GTACAGTCAAGGAAAGCATC+TGG | + | chr8.3:19413740-19413759 | MS.gene71890:CDS | 45.0% |
| ACTGAACCACTGCTCCTGAT+TGG | - | chr8.3:19412814-19412833 | None:intergenic | 50.0% | |
| ATCGAACCAATCAGGAGCAG+TGG | + | chr8.3:19412805-19412824 | MS.gene71890:intron | 50.0% | |
| ATTCTTGCATTTGCGGCTGC+AGG | + | chr8.3:19413920-19413939 | MS.gene71890:intron | 50.0% | |
| CCGCTTTATAACTCGAGTGC+AGG | + | chr8.3:19412505-19412524 | MS.gene71890:intron | 50.0% | |
| TTGAGGGGACTGTGCTTCTA+TGG | - | chr8.3:19413442-19413461 | None:intergenic | 50.0% | |
| ! | AGCCGTTGCTTCTTTTCCCA+AGG | - | chr8.3:19413795-19413814 | None:intergenic | 50.0% |
| ! | ATCTGAGTACTGCTGCTAGG+GGG | - | chr8.3:19412942-19412961 | None:intergenic | 50.0% |
| ! | GCCGTTGCTTCTTTTCCCAA+GGG | - | chr8.3:19413794-19413813 | None:intergenic | 50.0% |
| ATCACAGTAGCTGCCCTGTG+CGG | + | chr8.3:19411984-19412003 | MS.gene71890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19411642 | 19413978 | 19411642 | ID=MS.gene71890 |
| chr8.3 | mRNA | 19411642 | 19413978 | 19411642 | ID=MS.gene71890.t1;Parent=MS.gene71890 |
| chr8.3 | exon | 19411642 | 19411695 | 19411642 | ID=MS.gene71890.t1.exon1;Parent=MS.gene71890.t1 |
| chr8.3 | CDS | 19411642 | 19411695 | 19411642 | ID=cds.MS.gene71890.t1;Parent=MS.gene71890.t1 |
| chr8.3 | exon | 19411897 | 19412078 | 19411897 | ID=MS.gene71890.t1.exon2;Parent=MS.gene71890.t1 |
| chr8.3 | CDS | 19411897 | 19412078 | 19411897 | ID=cds.MS.gene71890.t1;Parent=MS.gene71890.t1 |
| chr8.3 | exon | 19413740 | 19413862 | 19413740 | ID=MS.gene71890.t1.exon3;Parent=MS.gene71890.t1 |
| chr8.3 | CDS | 19413740 | 19413862 | 19413740 | ID=cds.MS.gene71890.t1;Parent=MS.gene71890.t1 |
| chr8.3 | exon | 19413942 | 19413978 | 19413942 | ID=MS.gene71890.t1.exon4;Parent=MS.gene71890.t1 |
| chr8.3 | CDS | 19413942 | 19413978 | 19413942 | ID=cds.MS.gene71890.t1;Parent=MS.gene71890.t1 |
| Gene Sequence |
| Protein sequence |
