Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72555.t1 | XP_013455406.1 | 96.8 | 1041 | 32 | 1 | 1 | 1041 | 1 | 1040 | 0.00E+00 | 1875.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72555.t1 | Q9FII7 | 54.6 | 1031 | 465 | 2 | 12 | 1040 | 8 | 1037 | 1.3e-302 | 1040.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72555.t1 | A0A072UIF4 | 96.8 | 1041 | 32 | 1 | 1 | 1041 | 1 | 1040 | 0.0e+00 | 1875.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene72555 | 0.830756 | 2.46E-55 | -1.69E-46 |
| MS.gene049190 | MS.gene72555 | 0.823241 | 1.54E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene72555 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene72555 | 0.83831 | 3.10E-57 | -1.69E-46 |
| MS.gene049711 | MS.gene72555 | 0.801659 | 8.11E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene72555 | 0.836036 | 1.18E-56 | -1.69E-46 |
| MS.gene050020 | MS.gene72555 | 0.803665 | 3.13E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene72555 | 0.826657 | 2.41E-54 | -1.69E-46 |
| MS.gene050901 | MS.gene72555 | 0.807765 | 4.31E-50 | -1.69E-46 |
| MS.gene051021 | MS.gene72555 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene72555 | 0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene72555 | 0.851374 | 9.25E-61 | -1.69E-46 |
| MS.gene051279 | MS.gene72555 | 0.834941 | 2.24E-56 | -1.69E-46 |
| MS.gene051388 | MS.gene72555 | 0.813693 | 2.25E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene72555 | 0.863483 | 2.41E-64 | -1.69E-46 |
| MS.gene051719 | MS.gene72555 | 0.837787 | 4.23E-57 | -1.69E-46 |
| MS.gene051720 | MS.gene72555 | 0.858709 | 6.84E-63 | -1.69E-46 |
| MS.gene051744 | MS.gene72555 | 0.841125 | 5.74E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene72555 | 0.803998 | 2.67E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene72555 | 0.820409 | 6.96E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene72555 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene72555 | 0.833182 | 6.18E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene72555 | 0.835528 | 1.59E-56 | -1.69E-46 |
| MS.gene052732 | MS.gene72555 | 0.817487 | 3.21E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene72555 | 0.803168 | 3.97E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene72555 | 0.821029 | 5.02E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene72555 | 0.855185 | 7.47E-62 | -1.69E-46 |
| MS.gene053174 | MS.gene72555 | 0.80488 | 1.75E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene72555 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene72555 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene053621 | MS.gene72555 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene72555 | 0.814071 | 1.86E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene72555 | 0.812458 | 4.20E-51 | -1.69E-46 |
| MS.gene05447 | MS.gene72555 | 0.807191 | 5.70E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene72555 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene72555 | 0.857984 | 1.12E-62 | -1.69E-46 |
| MS.gene05462 | MS.gene72555 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene72555 | 0.822462 | 2.34E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene72555 | 0.873939 | 9.96E-68 | -1.69E-46 |
| MS.gene055466 | MS.gene72555 | 0.870529 | 1.36E-66 | -1.69E-46 |
| MS.gene055467 | MS.gene72555 | 0.821848 | 3.25E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene72555 | 0.846383 | 2.25E-59 | -1.69E-46 |
| MS.gene055469 | MS.gene72555 | 0.842528 | 2.45E-58 | -1.69E-46 |
| MS.gene055537 | MS.gene72555 | 0.845394 | 4.18E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene72555 | -0.845865 | 3.11E-59 | -1.69E-46 |
| MS.gene055778 | MS.gene72555 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene055890 | MS.gene72555 | 0.818284 | 2.12E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene72555 | 0.819385 | 1.19E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene72555 | -0.815856 | 7.46E-52 | -1.69E-46 |
| MS.gene056169 | MS.gene72555 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene72555 | 0.834991 | 2.18E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene72555 | 0.800042 | 1.74E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene72555 | 0.814483 | 1.51E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene72555 | 0.833561 | 4.97E-56 | -1.69E-46 |
| MS.gene057294 | MS.gene72555 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene72555 | 0.824621 | 7.31E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene72555 | 0.820062 | 8.36E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene72555 | 0.835274 | 1.85E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene72555 | 0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene058087 | MS.gene72555 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene72555 | 0.839494 | 1.53E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene72555 | 0.814199 | 1.74E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene72555 | 0.81188 | 5.61E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene72555 | 0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene72555 | 0.803322 | 3.68E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene72555 | 0.802626 | 5.13E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene72555 | 0.84166 | 4.15E-58 | -1.69E-46 |
| MS.gene060167 | MS.gene72555 | 0.818592 | 1.81E-52 | -1.69E-46 |
| MS.gene060312 | MS.gene72555 | 0.809878 | 1.52E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene72555 | 0.824746 | 6.83E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene72555 | 0.823933 | 1.06E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62647 | MS.gene72555 | PPI |
| MS.gene72555 | MS.gene058555 | PPI |
| MS.gene95862 | MS.gene72555 | PPI |
| MS.gene72555 | MS.gene015611 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72555.t1 | MTR_4g036760 | 97.791 | 1041 | 22 | 1 | 1 | 1041 | 1 | 1040 | 0.0 | 2101 |
| MS.gene72555.t1 | MTR_4g061050 | 80.019 | 1041 | 206 | 1 | 1 | 1041 | 1 | 1039 | 0.0 | 1680 |
| MS.gene72555.t1 | MTR_1g018410 | 67.647 | 68 | 16 | 2 | 161 | 226 | 8 | 71 | 7.10e-19 | 82.4 |
| MS.gene72555.t1 | MTR_4g115050 | 22.562 | 523 | 332 | 17 | 23 | 519 | 10 | 485 | 2.13e-12 | 72.0 |
| MS.gene72555.t1 | MTR_5g036370 | 24.221 | 417 | 245 | 15 | 23 | 426 | 22 | 380 | 7.33e-12 | 70.5 |
| MS.gene72555.t1 | MTR_3g033470 | 23.238 | 525 | 326 | 18 | 23 | 519 | 21 | 496 | 1.93e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72555.t1 | AT5G07660 | 56.078 | 1020 | 445 | 2 | 23 | 1040 | 20 | 1038 | 0.0 | 1124 |
| MS.gene72555.t1 | AT5G61460 | 56.050 | 1033 | 451 | 2 | 10 | 1040 | 6 | 1037 | 0.0 | 1115 |
| MS.gene72555.t1 | AT5G15920 | 21.657 | 531 | 343 | 18 | 15 | 519 | 12 | 495 | 4.65e-12 | 70.9 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATCGTTGCTTCTTATT+TGG | 0.126513 | 4.1:+62199463 | None:intergenic |
| CGAGACACGCGGGGTCTTTC+AGG | 0.130829 | 4.1:-62191576 | MS.gene72555:intron |
| GGATGAATTCGATGTCTTTA+TGG | 0.159745 | 4.1:-62190123 | MS.gene72555:intron |
| AGTTGCTTAATGGTAATAAA+TGG | 0.218798 | 4.1:-62202809 | MS.gene72555:CDS |
| TTTCCTGAAGATCTGCTTTC+CGG | 0.220234 | 4.1:+62208267 | None:intergenic |
| TTCATTCTGACAGCAAATTA+TGG | 0.237863 | 4.1:+62193581 | None:intergenic |
| TCAGCAAGTCAATGATCTTC+TGG | 0.239388 | 4.1:-62207667 | MS.gene72555:CDS |
| AATTCATCCATTGCTCTAAA+TGG | 0.247481 | 4.1:+62190137 | None:intergenic |
| ATTGATGGATGGTTTGTATT+AGG | 0.264261 | 4.1:+62202497 | None:intergenic |
| TCCAATCATGAAACTGAGTT+TGG | 0.284646 | 4.1:-62211953 | MS.gene72555:CDS |
| TATGATTTAGACTTTCTAAT+TGG | 0.286407 | 4.1:+62193508 | None:intergenic |
| ACTGCATTGTGTGTGGCTTT+TGG | 0.288433 | 4.1:-62210674 | MS.gene72555:CDS |
| AAGTCGTAGATGAGTATAAA+TGG | 0.303064 | 4.1:-62199375 | MS.gene72555:CDS |
| GTTTGACAGAAGTTGCTTAA+TGG | 0.303618 | 4.1:-62202819 | MS.gene72555:intron |
| CGAAGACCTCCTTCAAATTT+CGG | 0.309986 | 4.1:+62201574 | None:intergenic |
| TGGAAGCAGACCACAGCTTT+TGG | 0.314236 | 4.1:-62203486 | MS.gene72555:intron |
| GGTAATGGAGCTTGCGGATT+CGG | 0.321397 | 4.1:+62210160 | None:intergenic |
| AAATAACAAAGATAAATTTA+AGG | 0.322875 | 4.1:-62207781 | MS.gene72555:intron |
| CAGGGTCCTACATGATATTA+AGG | 0.331502 | 4.1:-62195122 | MS.gene72555:CDS |
| AATCTCATCACTGGTCAAAA+TGG | 0.331708 | 4.1:-62211920 | MS.gene72555:CDS |
| AATTGGCCGCTGATTTGCTC+TGG | 0.331929 | 4.1:+62193525 | None:intergenic |
| TTCCTGAAGATCTGCTTTCC+GGG | 0.332608 | 4.1:+62208268 | None:intergenic |
| GGAAAAGCAGATGATCTTAA+AGG | 0.346815 | 4.1:-62195481 | MS.gene72555:CDS |
| AGCCCTGTTTGATGCATCTT+GGG | 0.348212 | 4.1:+62191602 | None:intergenic |
| TTCAAAGGCAACAACCTTCC+CGG | 0.349359 | 4.1:+62201605 | None:intergenic |
| AAGAACGAAAGATTATTAAA+AGG | 0.350056 | 4.1:-62193234 | MS.gene72555:CDS |
| ATCTCAAGCGTCAACTTTGT+TGG | 0.350601 | 4.1:-62192015 | MS.gene72555:CDS |
| GAAAGCTGAGAGTGAACTTA+TGG | 0.364480 | 4.1:-62195300 | MS.gene72555:CDS |
| TACTTCTAAGAAGCTAGCTT+TGG | 0.372920 | 4.1:-62196333 | MS.gene72555:CDS |
| CAGCCCTGTTTGATGCATCT+TGG | 0.378810 | 4.1:+62191601 | None:intergenic |
| CCCAAACTCAGTTTCATGAT+TGG | 0.385209 | 4.1:+62211952 | None:intergenic |
| GCTTTCAAGCCTGATATATA+TGG | 0.392651 | 4.1:-62210212 | MS.gene72555:CDS |
| GAAGGCTTGCCAGAGGGCTT+TGG | 0.394747 | 4.1:-62192074 | MS.gene72555:intron |
| CGCACCTTGGTGATCTTTCA+AGG | 0.394888 | 4.1:+62210139 | None:intergenic |
| CCAAATAAGAAGCAACGATA+TGG | 0.395539 | 4.1:-62199463 | MS.gene72555:CDS |
| GTATTAGGAAGCATGTCTTC+TGG | 0.396628 | 4.1:+62202512 | None:intergenic |
| CACCCGGAAAGCAGATCTTC+AGG | 0.397151 | 4.1:-62208270 | MS.gene72555:CDS |
| TGGTCCAATTGGTGCCCATC+TGG | 0.400458 | 4.1:-62203394 | MS.gene72555:intron |
| TTGAAGGATTTCATTAAAAC+CGG | 0.406277 | 4.1:-62210617 | MS.gene72555:CDS |
| ATTGGCCGCTGATTTGCTCT+GGG | 0.407159 | 4.1:+62193526 | None:intergenic |
| TGCCCCAAGATGCATCAAAC+AGG | 0.408283 | 4.1:-62191605 | MS.gene72555:CDS |
| GGAGGCAGAGGAGCACTGTC+TGG | 0.409604 | 4.1:-62195101 | MS.gene72555:CDS |
| ATAACATCACCATATATATC+AGG | 0.411189 | 4.1:+62210203 | None:intergenic |
| TTGGTGATCTTTCAAGGTAA+TGG | 0.411963 | 4.1:+62210145 | None:intergenic |
| TCAAAGAGCATCTACTTTGA+AGG | 0.417335 | 4.1:-62210633 | MS.gene72555:CDS |
| AAGCCTCCCATTGGTCCAAT+TGG | 0.417367 | 4.1:-62203405 | MS.gene72555:CDS |
| CGTTGAACAAATTTCCATAC+AGG | 0.420583 | 4.1:-62207526 | MS.gene72555:CDS |
| ACGTGCAGTAGTTGTTTCAA+TGG | 0.421660 | 4.1:+62207635 | None:intergenic |
| TGATCATGCTAAGTCCGAAT+TGG | 0.424449 | 4.1:-62204710 | MS.gene72555:CDS |
| AAAAGAAACTTGCATGGTCA+TGG | 0.425831 | 4.1:-62207491 | MS.gene72555:CDS |
| CTGAATCTATTGAGGATTTG+AGG | 0.426933 | 4.1:-62193273 | MS.gene72555:CDS |
| CTTCGTTAGGAGGTTGTGAT+GGG | 0.427400 | 4.1:-62193554 | MS.gene72555:CDS |
| TGATCACCCCGCATGATACT+AGG | 0.435502 | 4.1:-62189936 | None:intergenic |
| CCAATCATGAAACTGAGTTT+GGG | 0.435968 | 4.1:-62211952 | MS.gene72555:CDS |
| CAGAATGAACTTGCTTCGTT+AGG | 0.445536 | 4.1:-62193567 | MS.gene72555:CDS |
| GCTTCGTTAGGAGGTTGTGA+TGG | 0.447998 | 4.1:-62193555 | MS.gene72555:CDS |
| AAATCAAAACCTATCCAATT+CGG | 0.451467 | 4.1:+62204696 | None:intergenic |
| TTCTAGATTGAAAGAAGAAG+AGG | 0.454972 | 4.1:-62204595 | MS.gene72555:intron |
| TGTAAGACGGAAAGAATTGA+TGG | 0.456250 | 4.1:+62202482 | None:intergenic |
| AGCTAAGATTGATAAACAAC+TGG | 0.459010 | 4.1:-62207391 | MS.gene72555:intron |
| GTTGCTTAATGGTAATAAAT+GGG | 0.459559 | 4.1:-62202808 | MS.gene72555:CDS |
| ATTACCAGATGGGCACCAAT+TGG | 0.462087 | 4.1:+62203390 | None:intergenic |
| CTTGTGATCAGTCACTATAA+AGG | 0.466397 | 4.1:+62202746 | None:intergenic |
| GTTCAATGTCTTGGTCGATC+TGG | 0.469596 | 4.1:-62202441 | MS.gene72555:intron |
| ATGATTCCCGCTTCGAGACT+CGG | 0.473613 | 4.1:+62212010 | None:intergenic |
| TATCGTTGCTTCTTATTTGG+AGG | 0.474228 | 4.1:+62199466 | None:intergenic |
| CTTGTTAACGACTATAATAC+CGG | 0.476476 | 4.1:-62201624 | MS.gene72555:CDS |
| TACATTCAGTTTCTGTCGAA+GGG | 0.478793 | 4.1:+62193195 | None:intergenic |
| AATGAACTTGCTTCGTTAGG+AGG | 0.480699 | 4.1:-62193564 | MS.gene72555:CDS |
| ATTTCGGATCCTTTGTTCAA+AGG | 0.481427 | 4.1:+62201590 | None:intergenic |
| AGATGGCACAACAGTTGAAA+AGG | 0.482076 | 4.1:-62205015 | MS.gene72555:CDS |
| ACAAAGGATCCGAAATTTGA+AGG | 0.483560 | 4.1:-62201583 | MS.gene72555:CDS |
| AAAATTTACCTCAATCGATA+AGG | 0.484478 | 4.1:+62191816 | None:intergenic |
| TAGGGACTTTGTGTAACTGC+TGG | 0.485961 | 4.1:-62196365 | MS.gene72555:CDS |
| TTCGAAAATCCAAAGCCCTC+TGG | 0.486490 | 4.1:+62192065 | None:intergenic |
| TGGGCACCAATTGGACCAAT+GGG | 0.486609 | 4.1:+62203399 | None:intergenic |
| CTTCATGCCTCCTCTGCTCA+AGG | 0.492997 | 4.1:+62195509 | None:intergenic |
| CGTCTAAGTAGTTCTGTTGA+AGG | 0.493088 | 4.1:-62199439 | MS.gene72555:CDS |
| TTTAAGTCGCTCTATGTCCT+TGG | 0.495627 | 4.1:-62206301 | MS.gene72555:intron |
| TTTATCAATCTTAGCTTGGC+AGG | 0.496904 | 4.1:+62207398 | None:intergenic |
| CATGTTGAAATTCAAAATGA+AGG | 0.503039 | 4.1:-62210242 | MS.gene72555:CDS |
| CGGGGTGATCAATATCCATT+GGG | 0.506474 | 4.1:+62189948 | None:intergenic |
| GTTGTTTATCAATCTTAGCT+TGG | 0.509132 | 4.1:+62207394 | None:intergenic |
| GCGGGGTGATCAATATCCAT+TGG | 0.509656 | 4.1:+62189947 | None:intergenic |
| GTTCACTCTCAGCTTTCTCA+AGG | 0.510647 | 4.1:+62195306 | None:intergenic |
| CAGATACTCTGAATCTATTG+AGG | 0.510872 | 4.1:-62193281 | MS.gene72555:CDS |
| TCGTTAAGCTCCTTCTCTAT+AGG | 0.511385 | 4.1:+62207579 | None:intergenic |
| AAAGAAACTTGCATGGTCAT+GGG | 0.520535 | 4.1:-62207490 | MS.gene72555:CDS |
| TCGCACATTGTTTCAAAAGA+CGG | 0.525566 | 4.1:+62202718 | None:intergenic |
| AATTAGTGACATACAGAAGA+TGG | 0.525628 | 4.1:-62205032 | MS.gene72555:CDS |
| TCACACTGTGTTCAATGTCT+TGG | 0.527984 | 4.1:-62202450 | MS.gene72555:CDS |
| CTTTATAGTGACTGATCACA+AGG | 0.528146 | 4.1:-62202745 | MS.gene72555:CDS |
| AAATTGAAAAGCTGAAGAAT+CGG | 0.528467 | 4.1:-62207428 | MS.gene72555:CDS |
| TTTGTTTCCTCCAAAAGCTG+TGG | 0.534002 | 4.1:+62203476 | None:intergenic |
| AATTAAACAGTTCTTCTACA+AGG | 0.535209 | 4.1:-62207700 | MS.gene72555:intron |
| AAGGAGGTCTTCGCTGTGGA+TGG | 0.536962 | 4.1:-62201564 | MS.gene72555:CDS |
| ATCACAAGTCAAGCAAATGA+AGG | 0.539154 | 4.1:-62206328 | MS.gene72555:CDS |
| ATGGGCACCAATTGGACCAA+TGG | 0.539785 | 4.1:+62203398 | None:intergenic |
| GCAGAGGAGGCATGAAGCAG+TGG | 0.542605 | 4.1:-62195503 | MS.gene72555:CDS |
| TGTAATACCTAGTATCATGC+GGG | 0.543861 | 4.1:+62189929 | None:intergenic |
| ATGCTAAGTCCGAATTGGAT+AGG | 0.544206 | 4.1:-62204705 | MS.gene72555:intron |
| ATTTCATTAAAACCGGTGCT+AGG | 0.545899 | 4.1:-62210610 | MS.gene72555:intron |
| AAGGCTTGAAGTACGAATGC+AGG | 0.545965 | 4.1:-62204996 | MS.gene72555:CDS |
| CACTTAGGCGTGAGAGCCGA+AGG | 0.546097 | 4.1:-62193485 | MS.gene72555:intron |
| TTCAATAAGACCTATAGAGA+AGG | 0.546249 | 4.1:-62207589 | MS.gene72555:CDS |
| ATACATTCAGTTTCTGTCGA+AGG | 0.549046 | 4.1:+62193194 | None:intergenic |
| AGAGTCTCCATTTAGAGCAA+TGG | 0.551198 | 4.1:-62190144 | MS.gene72555:CDS |
| TAGAAGACCTTGAGCAGAGG+AGG | 0.552531 | 4.1:-62195516 | MS.gene72555:CDS |
| GAGACTCTGTCATTTCATGA+AGG | 0.554710 | 4.1:+62190159 | None:intergenic |
| TATACTTCTTGTCATGATCT+CGG | 0.555494 | 4.1:+62203676 | None:intergenic |
| GGAGGAAGAGTTGTCTGCAC+CGG | 0.556729 | 4.1:+62199484 | None:intergenic |
| AGGTTGTTGCCTTTGAACAA+AGG | 0.562112 | 4.1:-62201599 | MS.gene72555:CDS |
| CTTAATATCATGTAGGACCC+TGG | 0.565032 | 4.1:+62195123 | None:intergenic |
| TCAATCTTAGCTTGGCAGGT+AGG | 0.567601 | 4.1:+62207402 | None:intergenic |
| TCTTGACTCATAATCACGCA+TGG | 0.570641 | 4.1:+62207831 | None:intergenic |
| GGAAAATTTGACGAATTGTG+TGG | 0.571143 | 4.1:-62195460 | MS.gene72555:intron |
| ACTGAAGGGGCTTCGAGATG+AGG | 0.571274 | 4.1:-62204734 | MS.gene72555:CDS |
| ACATGATATTAAGGAGGCAG+AGG | 0.571752 | 4.1:-62195113 | MS.gene72555:CDS |
| AGAGGCAGATCTCAAGCTTG+AGG | 0.572006 | 4.1:-62199344 | MS.gene72555:CDS |
| AAAGTCTAAATCATACACTT+AGG | 0.572201 | 4.1:-62193500 | MS.gene72555:CDS |
| TTTCAAGGTAATGGAGCTTG+CGG | 0.574874 | 4.1:+62210154 | None:intergenic |
| TTCACTCTCAGCTTTCTCAA+GGG | 0.574997 | 4.1:+62195307 | None:intergenic |
| ATGATAATGTCATGAAAACC+AGG | 0.575198 | 4.1:-62195141 | MS.gene72555:CDS |
| GCAGATGACCTTATCGATTG+AGG | 0.578588 | 4.1:-62191824 | MS.gene72555:intron |
| CAGGAAAGAAAGTTTGCACC+CGG | 0.579247 | 4.1:-62208286 | MS.gene72555:CDS |
| GGAATTGAGCATTCTACCAA+TGG | 0.580475 | 4.1:+62202767 | None:intergenic |
| GTTTCGCCGAGTCTCGAAGC+GGG | 0.581393 | 4.1:-62212016 | MS.gene72555:CDS |
| GTTGCTGTTGAACATGCCAT+TGG | 0.582204 | 4.1:-62202783 | MS.gene72555:CDS |
| CTGCCTCCTTAATATCATGT+AGG | 0.582341 | 4.1:+62195116 | None:intergenic |
| CACAAACTATATTACCAGAT+GGG | 0.585651 | 4.1:+62203380 | None:intergenic |
| ACTCAGTTTCATGATTGGAA+TGG | 0.585770 | 4.1:+62211957 | None:intergenic |
| AATACTTACTGCATTGTGTG+TGG | 0.586273 | 4.1:-62210681 | MS.gene72555:CDS |
| AGTCACGTTAATCTCATCAC+TGG | 0.586442 | 4.1:-62211929 | MS.gene72555:CDS |
| AGACGGAAAGAATTGATGGA+TGG | 0.589022 | 4.1:+62202486 | None:intergenic |
| CAGAGGAGGCATGAAGCAGT+GGG | 0.590258 | 4.1:-62195502 | MS.gene72555:CDS |
| AGGTTTAAGAAGCCTCCCAT+TGG | 0.592949 | 4.1:-62203414 | MS.gene72555:CDS |
| ACTGCAGGTGGATCTTGAGA+AGG | 0.594570 | 4.1:-62193607 | MS.gene72555:intron |
| GTATAAATGGAATAAGAGAG+AGG | 0.595109 | 4.1:-62199362 | MS.gene72555:CDS |
| GCCCTGTTTGATGCATCTTG+GGG | 0.595878 | 4.1:+62191603 | None:intergenic |
| TGAAATTCAAAATGAAGGAG+AGG | 0.598068 | 4.1:-62210237 | MS.gene72555:CDS |
| TTTATTGAAGGCTTGCCAGA+GGG | 0.599754 | 4.1:-62192080 | MS.gene72555:intron |
| AATCAAAAGGATTGATGATG+AGG | 0.600262 | 4.1:-62204535 | MS.gene72555:intron |
| GCAGAATAAAATTAAAACGA+TGG | 0.604147 | 4.1:-62207553 | MS.gene72555:CDS |
| ATATGGCATTTACCTAGCAC+CGG | 0.604173 | 4.1:+62210598 | None:intergenic |
| ATATTGAGAGATGTCATCAA+AGG | 0.607533 | 4.1:-62203434 | MS.gene72555:CDS |
| GTGATTATCGCATTGTAAGA+CGG | 0.609075 | 4.1:+62202469 | None:intergenic |
| AGACTCTGTCATTTCATGAA+GGG | 0.615851 | 4.1:+62190160 | None:intergenic |
| TTGGCCGCTGATTTGCTCTG+GGG | 0.619684 | 4.1:+62193527 | None:intergenic |
| GTTTATTGAAGGCTTGCCAG+AGG | 0.620811 | 4.1:-62192081 | MS.gene72555:intron |
| TGACGTGGACAAGAAACTTG+AGG | 0.624480 | 4.1:-62207463 | MS.gene72555:CDS |
| TGAAGCGTGCTAGAAGCACA+TGG | 0.626036 | 4.1:-62212063 | MS.gene72555:CDS |
| CTGAGGCACAAGGATCCCAA+TGG | 0.626707 | 4.1:-62189963 | MS.gene72555:CDS |
| TGTTAGAAGACCTTGAGCAG+AGG | 0.627560 | 4.1:-62195519 | MS.gene72555:CDS |
| GCCCCAAGATGCATCAAACA+GGG | 0.632464 | 4.1:-62191604 | MS.gene72555:CDS |
| TTCAACAATCTCATCAACTG+AGG | 0.632884 | 4.1:+62196262 | None:intergenic |
| CAGGGCTGTTCGAGACACGC+GGG | 0.633486 | 4.1:-62191586 | MS.gene72555:CDS |
| GCAGGCTGAAGAATCTGACA+TGG | 0.634034 | 4.1:-62204764 | MS.gene72555:intron |
| TGTGCGAAGGAAGCAAACTA+CGG | 0.638310 | 4.1:-62202702 | MS.gene72555:CDS |
| ACAGGGCTGTTCGAGACACG+CGG | 0.638618 | 4.1:-62191587 | MS.gene72555:CDS |
| GTGTAATACCTAGTATCATG+CGG | 0.643316 | 4.1:+62189928 | None:intergenic |
| ATTGACTTGCTGAAGAAGTG+TGG | 0.645872 | 4.1:+62207677 | None:intergenic |
| TTCGTTAGGAGGTTGTGATG+GGG | 0.645969 | 4.1:-62193553 | MS.gene72555:CDS |
| AAGGGCTAATGCAAAGCACA+AGG | 0.650919 | 4.1:+62190178 | None:intergenic |
| TTTGAAGGAGGTCTTCGCTG+TGG | 0.651154 | 4.1:-62201568 | MS.gene72555:CDS |
| GCTTAATGGTAATAAATGGG+CGG | 0.653794 | 4.1:-62202805 | MS.gene72555:CDS |
| GCACCAATTGGACCAATGGG+AGG | 0.661539 | 4.1:+62203402 | None:intergenic |
| ATCTCATCAACTGAGGACAA+AGG | 0.661907 | 4.1:+62196269 | None:intergenic |
| TCAACAACAGCAAAGCAACA+AGG | 0.665018 | 4.1:-62203625 | MS.gene72555:intron |
| ATGTTATCATTGTAGAACGT+AGG | 0.666781 | 4.1:-62210187 | MS.gene72555:CDS |
| ATTGAAACAACTACTGCACG+TGG | 0.668807 | 4.1:-62207633 | MS.gene72555:CDS |
| GGCTGAAGAATCTGACATGG+AGG | 0.674024 | 4.1:-62204761 | MS.gene72555:CDS |
| TAACGACTATAATACCGGGA+AGG | 0.678686 | 4.1:-62201619 | MS.gene72555:CDS |
| TTGTTAACGACTATAATACC+GGG | 0.685701 | 4.1:-62201623 | MS.gene72555:CDS |
| AGGGCTGTTCGAGACACGCG+GGG | 0.686602 | 4.1:-62191585 | MS.gene72555:CDS |
| AAGGATCCGAAATTTGAAGG+AGG | 0.689328 | 4.1:-62201580 | MS.gene72555:CDS |
| GGTCCTACATGATATTAAGG+AGG | 0.691180 | 4.1:-62195119 | MS.gene72555:CDS |
| GTAACCCCAGAGCAAATCAG+CGG | 0.691594 | 4.1:-62193531 | MS.gene72555:CDS |
| TGATAATGTCATGAAAACCA+GGG | 0.697105 | 4.1:-62195140 | MS.gene72555:CDS |
| GGTTTCGCCGAGTCTCGAAG+CGG | 0.701358 | 4.1:-62212017 | MS.gene72555:CDS |
| GAAGCGTGCTAGAAGCACAT+GGG | 0.710966 | 4.1:-62212062 | MS.gene72555:CDS |
| GTAATACCTAGTATCATGCG+GGG | 0.719878 | 4.1:+62189930 | None:intergenic |
| ATGGTCATGGGTTTATGACG+TGG | 0.730606 | 4.1:-62207478 | MS.gene72555:CDS |
| ATTACCTTGAAAGATCACCA+AGG | 0.762189 | 4.1:-62210143 | MS.gene72555:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 62189937 | 62212086 | 62189937 | ID=MS.gene72555 |
| chr4.1 | mRNA | 62189937 | 62212086 | 62189937 | ID=MS.gene72555.t1;Parent=MS.gene72555 |
| chr4.1 | exon | 62211918 | 62212086 | 62211918 | ID=MS.gene72555.t1.exon1;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62211918 | 62212086 | 62211918 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62210611 | 62210716 | 62210611 | ID=MS.gene72555.t1.exon2;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62210611 | 62210716 | 62210611 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62210144 | 62210277 | 62210144 | ID=MS.gene72555.t1.exon3;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62210144 | 62210277 | 62210144 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62208250 | 62208305 | 62208250 | ID=MS.gene72555.t1.exon4;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62208250 | 62208305 | 62208250 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62207782 | 62207868 | 62207782 | ID=MS.gene72555.t1.exon5;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62207782 | 62207868 | 62207782 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62207392 | 62207712 | 62207392 | ID=MS.gene72555.t1.exon6;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62207392 | 62207712 | 62207392 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62206302 | 62206415 | 62206302 | ID=MS.gene72555.t1.exon7;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62206302 | 62206415 | 62206302 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62204964 | 62205098 | 62204964 | ID=MS.gene72555.t1.exon8;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62204964 | 62205098 | 62204964 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62204706 | 62204782 | 62204706 | ID=MS.gene72555.t1.exon9;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62204706 | 62204782 | 62204706 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62204536 | 62204611 | 62204536 | ID=MS.gene72555.t1.exon10;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62204536 | 62204611 | 62204536 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62203626 | 62203700 | 62203626 | ID=MS.gene72555.t1.exon11;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62203626 | 62203700 | 62203626 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62203395 | 62203499 | 62203395 | ID=MS.gene72555.t1.exon12;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62203395 | 62203499 | 62203395 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62202663 | 62202832 | 62202663 | ID=MS.gene72555.t1.exon13;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62202663 | 62202832 | 62202663 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62202442 | 62202544 | 62202442 | ID=MS.gene72555.t1.exon14;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62202442 | 62202544 | 62202442 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62201555 | 62201667 | 62201555 | ID=MS.gene72555.t1.exon15;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62201555 | 62201667 | 62201555 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62199315 | 62199519 | 62199315 | ID=MS.gene72555.t1.exon16;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62199315 | 62199519 | 62199315 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62196253 | 62196384 | 62196253 | ID=MS.gene72555.t1.exon17;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62196253 | 62196384 | 62196253 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62195461 | 62195575 | 62195461 | ID=MS.gene72555.t1.exon18;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62195461 | 62195575 | 62195461 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62195268 | 62195353 | 62195268 | ID=MS.gene72555.t1.exon19;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62195268 | 62195353 | 62195268 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62195081 | 62195176 | 62195081 | ID=MS.gene72555.t1.exon20;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62195081 | 62195176 | 62195081 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62193486 | 62193622 | 62193486 | ID=MS.gene72555.t1.exon21;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62193486 | 62193622 | 62193486 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62193198 | 62193300 | 62193198 | ID=MS.gene72555.t1.exon22;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62193198 | 62193300 | 62193198 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62192013 | 62192092 | 62192013 | ID=MS.gene72555.t1.exon23;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62192013 | 62192092 | 62192013 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62191825 | 62191903 | 62191825 | ID=MS.gene72555.t1.exon24;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62191825 | 62191903 | 62191825 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62191577 | 62191634 | 62191577 | ID=MS.gene72555.t1.exon25;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62191577 | 62191634 | 62191577 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62190124 | 62190221 | 62190124 | ID=MS.gene72555.t1.exon26;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62190124 | 62190221 | 62190124 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| chr4.1 | exon | 62189937 | 62190031 | 62189937 | ID=MS.gene72555.t1.exon27;Parent=MS.gene72555.t1 |
| chr4.1 | CDS | 62189937 | 62190031 | 62189937 | ID=cds.MS.gene72555.t1;Parent=MS.gene72555.t1 |
| Gene Sequence |
| Protein sequence |
