Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76317.t1 | XP_013468026.1 | 90.4 | 645 | 28 | 2 | 1 | 633 | 1 | 623 | 1.20E-268 | 935.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76317.t1 | A0A072VKV4 | 90.4 | 645 | 28 | 2 | 1 | 633 | 1 | 623 | 8.6e-269 | 935.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene76317 | 0.847947 | 8.38E-60 | -1.69E-46 |
| MS.gene049159 | MS.gene76317 | 0.810108 | 1.36E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene76317 | 0.809746 | 1.62E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene76317 | 0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene76317 | 0.827419 | 1.58E-54 | -1.69E-46 |
| MS.gene050085 | MS.gene76317 | 0.835158 | 1.97E-56 | -1.69E-46 |
| MS.gene050361 | MS.gene76317 | 0.821417 | 4.08E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene76317 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene76317 | 0.826257 | 3.00E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene76317 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene76317 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene050737 | MS.gene76317 | 0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene76317 | 0.843714 | 1.18E-58 | -1.69E-46 |
| MS.gene051102 | MS.gene76317 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene76317 | 0.826155 | 3.17E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene76317 | 0.807316 | 5.37E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene76317 | 0.801574 | 8.44E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene76317 | 0.837079 | 6.42E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene76317 | 0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene76317 | 0.85462 | 1.09E-61 | -1.69E-46 |
| MS.gene052609 | MS.gene76317 | 0.865108 | 7.50E-65 | -1.69E-46 |
| MS.gene052776 | MS.gene76317 | 0.835904 | 1.28E-56 | -1.69E-46 |
| MS.gene052994 | MS.gene76317 | 0.800628 | 1.32E-48 | -1.69E-46 |
| MS.gene05315 | MS.gene76317 | 0.819105 | 1.38E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene76317 | 0.816593 | 5.11E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene76317 | 0.819123 | 1.37E-52 | -1.69E-46 |
| MS.gene055310 | MS.gene76317 | 0.827181 | 1.80E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene76317 | 0.809915 | 1.49E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene76317 | 0.822929 | 1.82E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene76317 | 0.818993 | 1.47E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene76317 | 0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene76317 | 0.823784 | 1.15E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene76317 | 0.817724 | 2.84E-52 | -1.69E-46 |
| MS.gene056519 | MS.gene76317 | 0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene76317 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene76317 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene76317 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene057601 | MS.gene76317 | 0.805295 | 1.43E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene76317 | 0.81287 | 3.41E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene76317 | 0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene76317 | 0.832485 | 9.20E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene76317 | 0.831792 | 1.37E-55 | -1.69E-46 |
| MS.gene058081 | MS.gene76317 | 0.839961 | 1.16E-57 | -1.69E-46 |
| MS.gene058292 | MS.gene76317 | 0.85736 | 1.72E-62 | -1.69E-46 |
| MS.gene058647 | MS.gene76317 | 0.803679 | 3.11E-49 | -1.69E-46 |
| MS.gene058919 | MS.gene76317 | 0.835521 | 1.60E-56 | -1.69E-46 |
| MS.gene059007 | MS.gene76317 | 0.809405 | 1.92E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene76317 | 0.826258 | 2.99E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene76317 | 0.844694 | 6.45E-59 | -1.69E-46 |
| MS.gene060296 | MS.gene76317 | 0.816495 | 5.37E-52 | -1.69E-46 |
| MS.gene060380 | MS.gene76317 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene76317 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene060679 | MS.gene76317 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene76317 | 0.851445 | 8.84E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene76317 | 0.815797 | 7.69E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene76317 | 0.838856 | 2.24E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene76317 | 0.823641 | 1.24E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene76317 | 0.828046 | 1.12E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene76317 | 0.800199 | 1.61E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene76317 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene06121 | MS.gene76317 | 0.806531 | 7.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76317.t1 | MTR_1g060580 | 91.783 | 645 | 19 | 2 | 1 | 633 | 1 | 623 | 0.0 | 1059 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76317.t1 | AT1G19485 | 39.273 | 578 | 231 | 19 | 62 | 631 | 8 | 473 | 6.15e-107 | 342 |
| MS.gene76317.t1 | AT1G19485 | 39.273 | 578 | 231 | 19 | 62 | 631 | 8 | 473 | 6.15e-107 | 342 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3.4:+29851450 | None:intergenic |
| TGGTTCATCTTATCACAAAA+TGG | 0.220389 | 3.4:-29851892 | MS.gene76317:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3.4:-29851836 | MS.gene76317:CDS |
| CCTCATGATTATTTACTTGC+TGG | 0.237869 | 3.4:-29848630 | MS.gene76317:CDS |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3.4:+29851314 | None:intergenic |
| ATATCAAACAAAGAAATCTT+AGG | 0.263931 | 3.4:+29854724 | None:intergenic |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3.4:+29851278 | None:intergenic |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3.4:-29850974 | MS.gene76317:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3.4:-29850973 | MS.gene76317:CDS |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3.4:-29854024 | MS.gene76317:CDS |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3.4:-29851876 | MS.gene76317:CDS |
| TTCTTCTTCCCCACAGAGTT+TGG | 0.336068 | 3.4:+29854663 | None:intergenic |
| AACATTGAGCATTTGAATAC+AGG | 0.343917 | 3.4:+29849675 | None:intergenic |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3.4:-29851390 | MS.gene76317:CDS |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3.4:+29851436 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3.4:+29851408 | None:intergenic |
| GCAGAGGTGCTGTGCAAATA+TGG | 0.367593 | 3.4:-29851854 | MS.gene76317:CDS |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3.4:-29850959 | MS.gene76317:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3.4:+29851177 | None:intergenic |
| GTGGGTTGGATATTAATCAT+AGG | 0.379274 | 3.4:-29851230 | MS.gene76317:CDS |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3.4:+29853721 | None:intergenic |
| GCTAGGCATGACACAATTCT+AGG | 0.385209 | 3.4:+29851072 | None:intergenic |
| GCTAAGGAAGGGAGCTGTGC+TGG | 0.397792 | 3.4:-29847434 | MS.gene76317:CDS |
| AATAATGGCCTACTTGTATC+CGG | 0.416017 | 3.4:+29851192 | None:intergenic |
| ATCAGGCTCCCCATGCATCC+TGG | 0.426421 | 3.4:+29853478 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3.4:+29851126 | None:intergenic |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3.4:-29850967 | MS.gene76317:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3.4:+29851384 | None:intergenic |
| GTGTCATGCCTAGCTCATAA+TGG | 0.439221 | 3.4:-29851063 | MS.gene76317:CDS |
| TAAATAGTGTGGCAATACTT+AGG | 0.440499 | 3.4:+29854881 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3.4:-29853505 | MS.gene76317:CDS |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3.4:-29851139 | MS.gene76317:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3.4:-29851038 | MS.gene76317:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 3.4:+29853461 | None:intergenic |
| TTACTTGCTGGCTGCCATGA+TGG | 0.453345 | 3.4:-29848618 | MS.gene76317:CDS |
| GCTGTTGCTGCTCATCCACC+TGG | 0.453970 | 3.4:-29851912 | MS.gene76317:CDS |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3.4:-29853748 | MS.gene76317:CDS |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3.4:-29853927 | MS.gene76317:intron |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3.4:+29851055 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3.4:-29853749 | MS.gene76317:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3.4:-29850994 | MS.gene76317:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3.4:-29851796 | MS.gene76317:CDS |
| CATGTCTTCAAAGAAATTCT+CGG | 0.470477 | 3.4:+29854696 | None:intergenic |
| GAAACTCTTGTTGCAAGAAG+TGG | 0.472511 | 3.4:-29851249 | MS.gene76317:CDS |
| GCTCTCAGTGCATGAGGAAG+AGG | 0.476909 | 3.4:+29849747 | None:intergenic |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3.4:+29851426 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3.4:+29854870 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3.4:+29851624 | None:intergenic |
| GGTTCATCTTATCACAAAAT+GGG | 0.495779 | 3.4:-29851891 | MS.gene76317:CDS |
| TTCCCCACAGAGTTTGGCAA+TGG | 0.498095 | 3.4:+29854669 | None:intergenic |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3.4:-29851172 | MS.gene76317:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3.4:-29853517 | MS.gene76317:CDS |
| TATCAAACAAAGAAATCTTA+GGG | 0.504074 | 3.4:+29854725 | None:intergenic |
| CTAGTTGGGGTTGCTAAGGA+AGG | 0.504373 | 3.4:-29847446 | MS.gene76317:intron |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3.4:-29851740 | MS.gene76317:CDS |
| CGAGAATTTCTTTGAAGACA+TGG | 0.507947 | 3.4:-29854695 | MS.gene76317:CDS |
| TCAGGCTCCCCATGCATCCT+GGG | 0.511070 | 3.4:+29853479 | None:intergenic |
| ATTGGTGTCCCAGGATGCAT+GGG | 0.511202 | 3.4:-29853487 | MS.gene76317:CDS |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3.4:-29851050 | MS.gene76317:CDS |
| CTAAGGAAGGGAGCTGTGCT+GGG | 0.519536 | 3.4:-29847433 | MS.gene76317:CDS |
| GATTGGTGTCCCAGGATGCA+TGG | 0.521867 | 3.4:-29853488 | MS.gene76317:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.522131 | 3.4:+29854741 | None:intergenic |
| GGGACCAAGTACATATCATC+TGG | 0.523971 | 3.4:-29851591 | MS.gene76317:CDS |
| TCTTGTTGCAAGAAGTGGGT+TGG | 0.532860 | 3.4:-29851244 | MS.gene76317:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3.4:+29851717 | None:intergenic |
| GGGCATTAGATTGGTGTCCC+AGG | 0.534140 | 3.4:-29853496 | MS.gene76317:CDS |
| CAAATTATACCGTTCCATCA+TGG | 0.534327 | 3.4:+29848604 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3.4:-29850995 | MS.gene76317:CDS |
| TGGGTTGGATATTAATCATA+GGG | 0.539686 | 3.4:-29851229 | MS.gene76317:CDS |
| TTATCTAGTTGGGGTTGCTA+AGG | 0.542118 | 3.4:-29847450 | MS.gene76317:intron |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3.4:+29853716 | None:intergenic |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3.4:-29853530 | MS.gene76317:CDS |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3.4:-29851309 | MS.gene76317:CDS |
| CATCTGGTAGTGTCCCGAAT+GGG | 0.555876 | 3.4:-29851575 | MS.gene76317:CDS |
| TGCTGGCTGCCATGATGGAA+CGG | 0.557319 | 3.4:-29848613 | MS.gene76317:intron |
| ACTACCAGATGATATGTACT+TGG | 0.557515 | 3.4:+29851587 | None:intergenic |
| AAACTCTTGTTGCAAGAAGT+GGG | 0.559697 | 3.4:-29851248 | MS.gene76317:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3.4:-29854053 | MS.gene76317:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3.4:-29854778 | MS.gene76317:CDS |
| TTGTATCAATTGCAGGTGGG+AGG | 0.560380 | 3.4:-29849772 | MS.gene76317:intron |
| GAGAGCAGTTTATACGCAGA+AGG | 0.563777 | 3.4:-29849730 | MS.gene76317:CDS |
| AATTCTTCATCTAAATGTGA+TGG | 0.566247 | 3.4:-29847505 | MS.gene76317:intron |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3.4:-29853527 | MS.gene76317:CDS |
| ATAATGGCCTACTTGTATCC+GGG | 0.572352 | 3.4:+29851193 | None:intergenic |
| AGCAGTTTATACGCAGAAGG+AGG | 0.573083 | 3.4:-29849727 | MS.gene76317:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3.4:-29854791 | MS.gene76317:CDS |
| ACACCATTGCCAAACTCTGT+GGG | 0.575153 | 3.4:-29854672 | MS.gene76317:CDS |
| AGCAAGTAAATAATCATGAG+GGG | 0.577811 | 3.4:+29848632 | None:intergenic |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3.4:-29851728 | MS.gene76317:CDS |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3.4:+29851372 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3.4:-29851870 | MS.gene76317:CDS |
| ACTGACCACTCCACTGTCAG+TGG | 0.585703 | 3.4:+29848660 | None:intergenic |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3.4:-29851049 | MS.gene76317:CDS |
| GTTGTAGCCCGGATACAAGT+AGG | 0.587647 | 3.4:-29851200 | MS.gene76317:CDS |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3.4:-29851803 | MS.gene76317:CDS |
| CAGCAAGTAAATAATCATGA+GGG | 0.589131 | 3.4:+29848631 | None:intergenic |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3.4:-29851628 | MS.gene76317:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3.4:-29851310 | MS.gene76317:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3.4:-29851611 | MS.gene76317:CDS |
| TGTAATTTGACTTACAGCAT+AGG | 0.590971 | 3.4:+29850441 | None:intergenic |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3.4:-29851835 | MS.gene76317:CDS |
| GACACCATTGCCAAACTCTG+TGG | 0.595970 | 3.4:-29854673 | MS.gene76317:CDS |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3.4:+29851127 | None:intergenic |
| TAGTTGGGGTTGCTAAGGAA+GGG | 0.598565 | 3.4:-29847445 | MS.gene76317:CDS |
| TAGGGAAAGAAGTTGTAGCC+CGG | 0.600770 | 3.4:-29851211 | MS.gene76317:CDS |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3.4:-29854769 | MS.gene76317:CDS |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3.4:-29853759 | MS.gene76317:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3.4:-29854914 | None:intergenic |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3.4:-29851804 | MS.gene76317:CDS |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3.4:+29851012 | None:intergenic |
| CCAGCAAGTAAATAATCATG+AGG | 0.616229 | 3.4:+29848630 | None:intergenic |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3.4:-29851055 | MS.gene76317:CDS |
| GCAGTTTATACGCAGAAGGA+GGG | 0.621415 | 3.4:-29849726 | MS.gene76317:CDS |
| AGCACCTCTGCCAGTAAGTG+AGG | 0.622420 | 3.4:+29851866 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3.4:-29851612 | MS.gene76317:CDS |
| TCATCTGGTAGTGTCCCGAA+TGG | 0.626879 | 3.4:-29851576 | MS.gene76317:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3.4:-29851058 | MS.gene76317:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3.4:-29853459 | MS.gene76317:intron |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3.4:+29850993 | None:intergenic |
| TAAACTGCTCTCAGTGCATG+AGG | 0.635449 | 3.4:+29849741 | None:intergenic |
| TCACAGCATTCCACTGACAG+TGG | 0.636573 | 3.4:-29848670 | MS.gene76317:intron |
| TTATACGCAGAAGGAGGGCA+CGG | 0.638590 | 3.4:-29849721 | MS.gene76317:CDS |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3.4:-29853516 | MS.gene76317:CDS |
| TTTATATTTAGGTTGCTCTG+TGG | 0.643998 | 3.4:-29847540 | MS.gene76317:intron |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3.4:+29851114 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3.4:-29853747 | MS.gene76317:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3.4:-29851732 | MS.gene76317:CDS |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3.4:-29854772 | MS.gene76317:CDS |
| GCATTCCACTGACAGTGGAG+TGG | 0.668981 | 3.4:-29848665 | MS.gene76317:CDS |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3.4:-29854754 | MS.gene76317:CDS |
| GCAAGTAAATAATCATGAGG+GGG | 0.677289 | 3.4:+29848633 | None:intergenic |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3.4:-29851035 | MS.gene76317:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3.4:+29853919 | None:intergenic |
| CACCATTGCCAAACTCTGTG+GGG | 0.682548 | 3.4:-29854671 | MS.gene76317:CDS |
| TGAAACGTGGCAGCTTACAG+AGG | 0.684971 | 3.4:-29849653 | MS.gene76317:intron |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3.4:+29851138 | None:intergenic |
| TTGGTGTCCCAGGATGCATG+GGG | 0.699959 | 3.4:-29853486 | MS.gene76317:CDS |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3.4:-29851153 | MS.gene76317:CDS |
| AAATGCTCAATGTTGAAACG+TGG | 0.713740 | 3.4:-29849666 | MS.gene76317:CDS |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3.4:-29854775 | MS.gene76317:CDS |
| TTGTGATAAGATGAACCAGG+TGG | 0.762548 | 3.4:+29851897 | None:intergenic |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3.4:+29853935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 29847427 | 29854923 | 29847427 | ID=MS.gene76317 |
| chr3.4 | mRNA | 29847427 | 29854923 | 29847427 | ID=MS.gene76317.t1;Parent=MS.gene76317 |
| chr3.4 | exon | 29854601 | 29854923 | 29854601 | ID=MS.gene76317.t1.exon1;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29854601 | 29854923 | 29854601 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29853928 | 29854063 | 29853928 | ID=MS.gene76317.t1.exon2;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29853928 | 29854063 | 29853928 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29853725 | 29853777 | 29853725 | ID=MS.gene76317.t1.exon3;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29853725 | 29853777 | 29853725 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29853460 | 29853550 | 29853460 | ID=MS.gene76317.t1.exon4;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29853460 | 29853550 | 29853460 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29850955 | 29851940 | 29850955 | ID=MS.gene76317.t1.exon5;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29850955 | 29851940 | 29850955 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29850401 | 29850466 | 29850401 | ID=MS.gene76317.t1.exon6;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29850401 | 29850466 | 29850401 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29849654 | 29849779 | 29849654 | ID=MS.gene76317.t1.exon7;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29849654 | 29849779 | 29849654 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29848614 | 29848686 | 29848614 | ID=MS.gene76317.t1.exon8;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29848614 | 29848686 | 29848614 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29847506 | 29847551 | 29847506 | ID=MS.gene76317.t1.exon9;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29847506 | 29847551 | 29847506 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| chr3.4 | exon | 29847427 | 29847464 | 29847427 | ID=MS.gene76317.t1.exon10;Parent=MS.gene76317.t1 |
| chr3.4 | CDS | 29847427 | 29847464 | 29847427 | ID=cds.MS.gene76317.t1;Parent=MS.gene76317.t1 |
| Gene Sequence |
| Protein sequence |
