Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77475.t1 | XP_003601580.1 | 96 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 2.80E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77475.t1 | Q9S750 | 72.6 | 197 | 54 | 0 | 1 | 197 | 40 | 236 | 3.5e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77475.t1 | G7J9J2 | 96.0 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 2.0e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene77475 | 0.812968 | 3.25E-51 | -1.69E-46 |
| MS.gene049596 | MS.gene77475 | 0.835157 | 1.98E-56 | -1.69E-46 |
| MS.gene049622 | MS.gene77475 | 0.818222 | 2.19E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene77475 | 0.863466 | 2.44E-64 | -1.69E-46 |
| MS.gene050297 | MS.gene77475 | 0.889434 | 2.43E-73 | -1.69E-46 |
| MS.gene050648 | MS.gene77475 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene05124 | MS.gene77475 | 0.831844 | 1.33E-55 | -1.69E-46 |
| MS.gene051263 | MS.gene77475 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene051423 | MS.gene77475 | 0.807469 | 4.98E-50 | -1.69E-46 |
| MS.gene051478 | MS.gene77475 | 0.802881 | 4.55E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene77475 | 0.824293 | 8.73E-54 | -1.69E-46 |
| MS.gene051698 | MS.gene77475 | 0.803917 | 2.77E-49 | -1.69E-46 |
| MS.gene051742 | MS.gene77475 | 0.810555 | 1.09E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene77475 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene77475 | 0.834101 | 3.64E-56 | -1.69E-46 |
| MS.gene052143 | MS.gene77475 | 0.859113 | 5.18E-63 | -1.69E-46 |
| MS.gene052308 | MS.gene77475 | 0.82659 | 2.50E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene77475 | 0.894824 | 1.71E-75 | -1.69E-46 |
| MS.gene053173 | MS.gene77475 | 0.853454 | 2.37E-61 | -1.69E-46 |
| MS.gene053348 | MS.gene77475 | 0.836653 | 8.25E-57 | -1.69E-46 |
| MS.gene053416 | MS.gene77475 | 0.849022 | 4.22E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene77475 | 0.849751 | 2.64E-60 | -1.69E-46 |
| MS.gene05369 | MS.gene77475 | 0.840887 | 6.63E-58 | -1.69E-46 |
| MS.gene054551 | MS.gene77475 | 0.85694 | 2.29E-62 | -1.69E-46 |
| MS.gene054593 | MS.gene77475 | 0.824052 | 9.95E-54 | -1.69E-46 |
| MS.gene054643 | MS.gene77475 | 0.827956 | 1.17E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene77475 | 0.842213 | 2.97E-58 | -1.69E-46 |
| MS.gene055578 | MS.gene77475 | 0.847246 | 1.31E-59 | -1.69E-46 |
| MS.gene055957 | MS.gene77475 | 0.870297 | 1.62E-66 | -1.69E-46 |
| MS.gene056041 | MS.gene77475 | 0.868239 | 7.57E-66 | -1.69E-46 |
| MS.gene05640 | MS.gene77475 | 0.833653 | 4.71E-56 | -1.69E-46 |
| MS.gene056526 | MS.gene77475 | 0.823082 | 1.68E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene77475 | 0.829243 | 5.74E-55 | -1.69E-46 |
| MS.gene057483 | MS.gene77475 | 0.842765 | 2.12E-58 | -1.69E-46 |
| MS.gene058196 | MS.gene77475 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene77475 | 0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene77475 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene058818 | MS.gene77475 | 0.839857 | 1.23E-57 | -1.69E-46 |
| MS.gene058844 | MS.gene77475 | 0.830061 | 3.63E-55 | -1.69E-46 |
| MS.gene058853 | MS.gene77475 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene77475 | 0.838005 | 3.72E-57 | -1.69E-46 |
| MS.gene059553 | MS.gene77475 | 0.801872 | 7.33E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene77475 | 0.849072 | 4.09E-60 | -1.69E-46 |
| MS.gene060565 | MS.gene77475 | 0.853748 | 1.95E-61 | -1.69E-46 |
| MS.gene06057 | MS.gene77475 | 0.83802 | 3.68E-57 | -1.69E-46 |
| MS.gene06093 | MS.gene77475 | 0.854822 | 9.53E-62 | -1.69E-46 |
| MS.gene061099 | MS.gene77475 | 0.846759 | 1.78E-59 | -1.69E-46 |
| MS.gene061260 | MS.gene77475 | 0.884558 | 1.73E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77475.t1 | MTR_3g083230 | 96.020 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 1.67e-143 | 399 |
| MS.gene77475.t1 | MTR_3g082350 | 80.000 | 65 | 9 | 1 | 110 | 174 | 8 | 68 | 9.42e-31 | 108 |
| MS.gene77475.t1 | MTR_3g083240 | 82.692 | 52 | 9 | 0 | 109 | 160 | 83 | 134 | 9.31e-22 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77475.t1 | AT3G07800 | 72.589 | 197 | 54 | 0 | 1 | 197 | 40 | 236 | 9.41e-106 | 304 |
| MS.gene77475.t1 | AT5G23070 | 66.851 | 181 | 59 | 1 | 1 | 180 | 86 | 266 | 1.24e-91 | 270 |
Find 52 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGGGGCTGCCTCAATA+AGG | 0.285622 | 3.2:-72059845 | None:intergenic |
| GGTAAAATTGTCGTCGTTGC+AGG | 0.308301 | 3.2:+72059442 | MS.gene77475:CDS |
| TTTGTGGGTCCCATGTTTGC+TGG | 0.311613 | 3.2:+72058189 | None:intergenic |
| TGGATGCAGTTGGATGTTAT+TGG | 0.318715 | 3.2:+72059355 | MS.gene77475:intron |
| GAGAAACAAACTGAACTAAT+TGG | 0.334941 | 3.2:+72059711 | MS.gene77475:CDS |
| TTAATTATTTATCAAACAAC+TGG | 0.346132 | 3.2:-72059861 | None:intergenic |
| TCTTTGAACAACATCAAATC+TGG | 0.352909 | 3.2:-72058486 | None:intergenic |
| CAAATCTGGCAATGCCCAAC+AGG | 0.359213 | 3.2:-72058472 | None:intergenic |
| TGGTTCTTCAGGAGAAGCTT+TGG | 0.392708 | 3.2:+72059585 | MS.gene77475:intron |
| CGGGATTAAATTTCCCTGTT+GGG | 0.403088 | 3.2:+72058458 | MS.gene77475:CDS |
| AATTGTCGTCGTTGCAGGCC+TGG | 0.427705 | 3.2:+72059447 | MS.gene77475:CDS |
| TTCTTTACCTTGAGGAAGAC+GGG | 0.457820 | 3.2:+72059687 | MS.gene77475:CDS |
| TTAGTTACAGTATCAGCAAT+TGG | 0.463498 | 3.2:-72059627 | None:intergenic |
| GCTGTCAAGAAGTGTGTCTT+CGG | 0.463980 | 3.2:+72059798 | MS.gene77475:CDS |
| AACTGGGGCTGCCTCAATAA+GGG | 0.464936 | 3.2:-72059844 | None:intergenic |
| CGGACTTAATACGACGAAGA+AGG | 0.470773 | 3.2:-72058224 | None:intergenic |
| ACATAGTGATGGCGGCAAAC+CGG | 0.478921 | 3.2:-72059753 | None:intergenic |
| CGTCTTCCTCAAGGTAAAGA+AGG | 0.488284 | 3.2:-72059685 | None:intergenic |
| CGGTCATGAGGCCTATCAAA+AGG | 0.492616 | 3.2:+72058515 | MS.gene77475:CDS |
| ACGGGATTAAATTTCCCTGT+TGG | 0.499672 | 3.2:+72058457 | MS.gene77475:CDS |
| CTTCTTTACCTTGAGGAAGA+CGG | 0.507473 | 3.2:+72059686 | MS.gene77475:CDS |
| TGGAAGTGATTCCCTTATTG+AGG | 0.511120 | 3.2:+72059833 | MS.gene77475:CDS |
| ATGTTGTTCAAAGATAAATA+CGG | 0.514186 | 3.2:+72058495 | MS.gene77475:CDS |
| TGCCGCCATCACTATGTGAA+TGG | 0.524204 | 3.2:+72059759 | MS.gene77475:CDS |
| AACAAACTGAACTAATTGGT+GGG | 0.528191 | 3.2:+72059715 | MS.gene77475:CDS |
| TTTCTCTCCCGTCTTCCTCA+AGG | 0.528615 | 3.2:-72059694 | None:intergenic |
| CAGCTCGTTGTGAACTATGC+GGG | 0.536830 | 3.2:+72059655 | MS.gene77475:CDS |
| GGACTTAATACGACGAAGAA+GGG | 0.537672 | 3.2:-72058223 | None:intergenic |
| ACTCTGTTGTGACCCATGAC+GGG | 0.543331 | 3.2:+72058439 | MS.gene77475:CDS |
| TGGGGCTGATTTATACATGC+CGG | 0.547414 | 3.2:+72059734 | MS.gene77475:CDS |
| GGGAAATTTAATCCCGTCAT+GGG | 0.553176 | 3.2:-72058451 | None:intergenic |
| ACCTCAAGTAATCACCATCC+AGG | 0.557271 | 3.2:-72059465 | None:intergenic |
| AAACAAACTGAACTAATTGG+TGG | 0.568465 | 3.2:+72059714 | MS.gene77475:CDS |
| AGGGAAATTTAATCCCGTCA+TGG | 0.569407 | 3.2:-72058452 | None:intergenic |
| GTCGTCGTTGCAGGCCTGGA+TGG | 0.573763 | 3.2:+72059451 | MS.gene77475:CDS |
| ATTAAGTCCGAAGTTGATAA+CGG | 0.580529 | 3.2:+72058237 | MS.gene77475:CDS |
| TGCAAGGCTGCTGATGAAGA+TGG | 0.584415 | 3.2:+72059421 | MS.gene77475:CDS |
| AGTCCGAAGTTGATAACGGC+AGG | 0.586524 | 3.2:+72058241 | MS.gene77475:CDS |
| GCCTGGATGGTGATTACTTG+AGG | 0.593913 | 3.2:+72059464 | MS.gene77475:CDS |
| TAATTATTTATCAAACAACT+GGG | 0.597416 | 3.2:-72059860 | None:intergenic |
| TGTGAATGGTCAAGTTGTTG+TGG | 0.597690 | 3.2:+72059773 | MS.gene77475:CDS |
| GACTCTGTTGTGACCCATGA+CGG | 0.598002 | 3.2:+72058438 | MS.gene77475:CDS |
| GTACCTGCCGTTATCAACTT+CGG | 0.610552 | 3.2:-72058244 | None:intergenic |
| AACGCGCCTTCTTTACCTTG+AGG | 0.616597 | 3.2:+72059679 | MS.gene77475:CDS |
| CAAAGATAAATACGGTCATG+AGG | 0.624640 | 3.2:+72058503 | MS.gene77475:CDS |
| ACAAACTGAACTAATTGGTG+GGG | 0.635305 | 3.2:+72059716 | MS.gene77475:CDS |
| CTTGACCATTCACATAGTGA+TGG | 0.636820 | 3.2:-72059764 | None:intergenic |
| AAATCTGGCAATGCCCAACA+GGG | 0.637311 | 3.2:-72058471 | None:intergenic |
| GACCATTCACATAGTGATGG+CGG | 0.647772 | 3.2:-72059761 | None:intergenic |
| AATTATTTATCAAACAACTG+GGG | 0.668394 | 3.2:-72059859 | None:intergenic |
| GGATGTTATTGGTATAGACG+AGG | 0.669586 | 3.2:+72059366 | MS.gene77475:CDS |
| ACAGCTCGTTGTGAACTATG+CGG | 0.719807 | 3.2:+72059654 | MS.gene77475:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAATAACATAATGTA+TGG | + | chr3.2:72059275-72059294 | MS.gene77475:intron | 10.0% |
| !! | TTCAAAAGAAAAAAAAGTTA+TGG | + | chr3.2:72058894-72058913 | MS.gene77475:intron | 15.0% |
| !!! | ATTATCATAATTTTTTGTGA+AGG | + | chr3.2:72058370-72058389 | MS.gene77475:intron | 15.0% |
| !!! | GTAAGTTTTTTTTTAAATCT+CGG | + | chr3.2:72059240-72059259 | MS.gene77475:intron | 15.0% |
| !! | ATGTTGTTCAAAGATAAATA+CGG | + | chr3.2:72058495-72058514 | MS.gene77475:CDS | 20.0% |
| !! | TTCAAATTGTGATCAATATA+TGG | + | chr3.2:72058669-72058688 | MS.gene77475:intron | 20.0% |
| !!! | ATTTTGAGAAAAAAATGTCA+AGG | + | chr3.2:72059491-72059510 | MS.gene77475:intron | 20.0% |
| ! | AACAAGAAGAAAAAAGAATC+TGG | - | chr3.2:72058283-72058302 | None:intergenic | 25.0% |
| ! | ACAAGAAGAAAAAAGAATCT+GGG | - | chr3.2:72058282-72058301 | None:intergenic | 25.0% |
| ! | ACACCATTAGAAATTTAGAA+GGG | - | chr3.2:72059561-72059580 | None:intergenic | 25.0% |
| ! | GATGAAATGTTATGATTACT+AGG | + | chr3.2:72058324-72058343 | MS.gene77475:intron | 25.0% |
| ! | GTGATTTAAAAAACCTTTAG+TGG | - | chr3.2:72059065-72059084 | None:intergenic | 25.0% |
| !! | AAATTTCTAATGGTGTGTTT+TGG | + | chr3.2:72059565-72059584 | MS.gene77475:intron | 25.0% |
| !! | CATTGAAATTACCTTTTGAT+AGG | - | chr3.2:72058529-72058548 | None:intergenic | 25.0% |
| !!! | AGAAATTTTGATGATACAAC+TGG | + | chr3.2:72059037-72059056 | MS.gene77475:intron | 25.0% |
| !!! | ATAGCATTGATTGAATCAAT+TGG | + | chr3.2:72059086-72059105 | MS.gene77475:intron | 25.0% |
| !!! | ATTTTAGTAGTTACAAGTGT+TGG | + | chr3.2:72058611-72058630 | MS.gene77475:intron | 25.0% |
| !!! | TAATTTTTTGTGAAGGAATG+TGG | + | chr3.2:72058377-72058396 | MS.gene77475:intron | 25.0% |
| !!! | TCTTTTGAAAACTCAATATC+TGG | - | chr3.2:72058883-72058902 | None:intergenic | 25.0% |
| !!! | TGCTGAATGTGTTATTATTT+TGG | + | chr3.2:72059335-72059354 | MS.gene77475:intron | 25.0% |
| AAACAAACTGAACTAATTGG+TGG | + | chr3.2:72059714-72059733 | MS.gene77475:CDS | 30.0% | |
| AACAAACTGAACTAATTGGT+GGG | + | chr3.2:72059715-72059734 | MS.gene77475:CDS | 30.0% | |
| AATTATGGTTGTGGTTACAT+AGG | + | chr3.2:72059011-72059030 | MS.gene77475:intron | 30.0% | |
| CACACCATTAGAAATTTAGA+AGG | - | chr3.2:72059562-72059581 | None:intergenic | 30.0% | |
| GAAAAAAAAGTTATGGCTCA+AGG | + | chr3.2:72058901-72058920 | MS.gene77475:intron | 30.0% | |
| GAGAAACAAACTGAACTAAT+TGG | + | chr3.2:72059711-72059730 | MS.gene77475:CDS | 30.0% | |
| TATTGTTGCACTTGCAATTA+TGG | + | chr3.2:72058996-72059015 | MS.gene77475:intron | 30.0% | |
| TCACCCTTCTAAATTTCTAA+TGG | + | chr3.2:72059555-72059574 | MS.gene77475:intron | 30.0% | |
| TCTTTGAACAACATCAAATC+TGG | - | chr3.2:72058489-72058508 | None:intergenic | 30.0% | |
| TGTGATCAATATATGGTTCA+AGG | + | chr3.2:72058676-72058695 | MS.gene77475:intron | 30.0% | |
| TGTTGGAGTAATCATATCAA+TGG | + | chr3.2:72058628-72058647 | MS.gene77475:intron | 30.0% | |
| TTAGTTACAGTATCAGCAAT+TGG | - | chr3.2:72059630-72059649 | None:intergenic | 30.0% | |
| !! | ATTAAGTCCGAAGTTGATAA+CGG | + | chr3.2:72058237-72058256 | MS.gene77475:CDS | 30.0% |
| !! | CATAGATCTGGCTTTAAATT+GGG | + | chr3.2:72058806-72058825 | MS.gene77475:intron | 30.0% |
| !!! | GTTATTATTTTGGATGCAGT+TGG | + | chr3.2:72059345-72059364 | MS.gene77475:intron | 30.0% |
| AAAACTCAATATCTGGCCTA+AGG | - | chr3.2:72058876-72058895 | None:intergenic | 35.0% | |
| ACAAACTGAACTAATTGGTG+GGG | + | chr3.2:72059716-72059735 | MS.gene77475:CDS | 35.0% | |
| CAAAGATAAATACGGTCATG+AGG | + | chr3.2:72058503-72058522 | MS.gene77475:CDS | 35.0% | |
| ! | CCAATTTAAAGCCAGATCTA+TGG | - | chr3.2:72058808-72058827 | None:intergenic | 35.0% |
| ! | CTTATATGACTTTTGCTGCA+AGG | + | chr3.2:72059405-72059424 | MS.gene77475:CDS | 35.0% |
| !! | CCATAGATCTGGCTTTAAAT+TGG | + | chr3.2:72058805-72058824 | MS.gene77475:intron | 35.0% |
| AATTGAACCCGAGACCTTAT+GGG | - | chr3.2:72058756-72058775 | None:intergenic | 40.0% | |
| ACGGGATTAAATTTCCCTGT+TGG | + | chr3.2:72058457-72058476 | MS.gene77475:CDS | 40.0% | |
| AGGGAAATTTAATCCCGTCA+TGG | - | chr3.2:72058455-72058474 | None:intergenic | 40.0% | |
| AGTCTTAAGTCAACACCACA+AGG | - | chr3.2:72058720-72058739 | None:intergenic | 40.0% | |
| ATGTTACTATGTCAGTGACG+TGG | + | chr3.2:72059175-72059194 | MS.gene77475:intron | 40.0% | |
| ATTGGACTCCTCGGATTAAT+CGG | + | chr3.2:72058849-72058868 | MS.gene77475:intron | 40.0% | |
| CGGGATTAAATTTCCCTGTT+GGG | + | chr3.2:72058458-72058477 | MS.gene77475:CDS | 40.0% | |
| CTTCTTTACCTTGAGGAAGA+CGG | + | chr3.2:72059686-72059705 | MS.gene77475:CDS | 40.0% | |
| CTTGACCATTCACATAGTGA+TGG | - | chr3.2:72059767-72059786 | None:intergenic | 40.0% | |
| GATACAACTGGTACCACTAA+AGG | + | chr3.2:72059049-72059068 | MS.gene77475:intron | 40.0% | |
| GGACTTAATACGACGAAGAA+GGG | - | chr3.2:72058226-72058245 | None:intergenic | 40.0% | |
| GGATGTTATTGGTATAGACG+AGG | + | chr3.2:72059366-72059385 | MS.gene77475:CDS | 40.0% | |
| GGGAAATTTAATCCCGTCAT+GGG | - | chr3.2:72058454-72058473 | None:intergenic | 40.0% | |
| GTCTTCGGATCTCAAAAAGT+TGG | + | chr3.2:72059813-72059832 | MS.gene77475:CDS | 40.0% | |
| TGCACTTGCAATTATGGTTG+TGG | + | chr3.2:72059002-72059021 | MS.gene77475:intron | 40.0% | |
| TGGAAGTGATTCCCTTATTG+AGG | + | chr3.2:72059833-72059852 | MS.gene77475:CDS | 40.0% | |
| TGGATGCAGTTGGATGTTAT+TGG | + | chr3.2:72059355-72059374 | MS.gene77475:intron | 40.0% | |
| TTCTTTACCTTGAGGAAGAC+GGG | + | chr3.2:72059687-72059706 | MS.gene77475:CDS | 40.0% | |
| TTTAAATTGGGCTCCACAAG+TGG | + | chr3.2:72058818-72058837 | MS.gene77475:intron | 40.0% | |
| ! | ATTCCTTCCGGTGTCAATTT+CGG | + | chr3.2:72058773-72058792 | MS.gene77475:intron | 40.0% |
| ! | TGTGAATGGTCAAGTTGTTG+TGG | + | chr3.2:72059773-72059792 | MS.gene77475:CDS | 40.0% |
| !! | GTGGTGTTGACTTAAGACTT+TGG | + | chr3.2:72058721-72058740 | MS.gene77475:intron | 40.0% |
| !!! | ATGGTGTGTTTTGGTTCTTC+AGG | + | chr3.2:72059574-72059593 | MS.gene77475:intron | 40.0% |
| AAATCTGGCAATGCCCAACA+GGG | - | chr3.2:72058474-72058493 | None:intergenic | 45.0% | |
| ACAGCTCGTTGTGAACTATG+CGG | + | chr3.2:72059654-72059673 | MS.gene77475:CDS | 45.0% | |
| ACCTCAAGTAATCACCATCC+AGG | - | chr3.2:72059468-72059487 | None:intergenic | 45.0% | |
| ACTATGTCAGTGACGTGGTT+GGG | + | chr3.2:72059180-72059199 | MS.gene77475:intron | 45.0% | |
| ATTGAACCCGAGACCTTATG+GGG | - | chr3.2:72058755-72058774 | None:intergenic | 45.0% | |
| CGGACTTAATACGACGAAGA+AGG | - | chr3.2:72058227-72058246 | None:intergenic | 45.0% | |
| CGTCTTCCTCAAGGTAAAGA+AGG | - | chr3.2:72059688-72059707 | None:intergenic | 45.0% | |
| GAATTGAACCCGAGACCTTA+TGG | - | chr3.2:72058757-72058776 | None:intergenic | 45.0% | |
| GACCATTCACATAGTGATGG+CGG | - | chr3.2:72059764-72059783 | None:intergenic | 45.0% | |
| GGTAAAATTGTCGTCGTTGC+AGG | + | chr3.2:72059442-72059461 | MS.gene77475:CDS | 45.0% | |
| GTACCTGCCGTTATCAACTT+CGG | - | chr3.2:72058247-72058266 | None:intergenic | 45.0% | |
| TACTATGTCAGTGACGTGGT+TGG | + | chr3.2:72059179-72059198 | MS.gene77475:intron | 45.0% | |
| TGGTTCTTCAGGAGAAGCTT+TGG | + | chr3.2:72059585-72059604 | MS.gene77475:intron | 45.0% | |
| ! | GCTGTCAAGAAGTGTGTCTT+CGG | + | chr3.2:72059798-72059817 | MS.gene77475:CDS | 45.0% |
| ! | TGGGGCTGATTTATACATGC+CGG | + | chr3.2:72059734-72059753 | MS.gene77475:CDS | 45.0% |
| ! | TTTGGAGTGTGATCCCCATA+AGG | + | chr3.2:72058739-72058758 | MS.gene77475:intron | 45.0% |
| AACGCGCCTTCTTTACCTTG+AGG | + | chr3.2:72059679-72059698 | MS.gene77475:CDS | 50.0% | |
| AACTGGGGCTGCCTCAATAA+GGG | - | chr3.2:72059847-72059866 | None:intergenic | 50.0% | |
| AATTGGGCTCCACAAGTGGA+CGG | + | chr3.2:72058822-72058841 | MS.gene77475:intron | 50.0% | |
| ACCACAAGGTCAACCCAAGT+GGG | - | chr3.2:72058706-72058725 | None:intergenic | 50.0% | |
| ACTCTGTTGTGACCCATGAC+GGG | + | chr3.2:72058439-72058458 | MS.gene77475:CDS | 50.0% | |
| CAAATCTGGCAATGCCCAAC+AGG | - | chr3.2:72058475-72058494 | None:intergenic | 50.0% | |
| CAGCTCGTTGTGAACTATGC+GGG | + | chr3.2:72059655-72059674 | MS.gene77475:CDS | 50.0% | |
| CCAATCTAACCGTCCACTTG+TGG | - | chr3.2:72058834-72058853 | None:intergenic | 50.0% | |
| CCACAAGTGGACGGTTAGAT+TGG | + | chr3.2:72058831-72058850 | MS.gene77475:intron | 50.0% | |
| CCTAAGGACCGATTAATCCG+AGG | - | chr3.2:72058860-72058879 | None:intergenic | 50.0% | |
| CCTCGGATTAATCGGTCCTT+AGG | + | chr3.2:72058857-72058876 | MS.gene77475:intron | 50.0% | |
| CGGTCATGAGGCCTATCAAA+AGG | + | chr3.2:72058515-72058534 | MS.gene77475:CDS | 50.0% | |
| CTATGTCAGTGACGTGGTTG+GGG | + | chr3.2:72059181-72059200 | MS.gene77475:intron | 50.0% | |
| GACGGTTAGATTGGACTCCT+CGG | + | chr3.2:72058840-72058859 | MS.gene77475:intron | 50.0% | |
| GACTCTGTTGTGACCCATGA+CGG | + | chr3.2:72058438-72058457 | MS.gene77475:CDS | 50.0% | |
| GCCTGGATGGTGATTACTTG+AGG | + | chr3.2:72059464-72059483 | MS.gene77475:CDS | 50.0% | |
| GGTTCAAGGTAACCCCACTT+GGG | + | chr3.2:72058690-72058709 | MS.gene77475:intron | 50.0% | |
| GTCTCGGGTTCAATTCCTTC+CGG | + | chr3.2:72058761-72058780 | MS.gene77475:intron | 50.0% | |
| GTGTGATCCCCATAAGGTCT+CGG | + | chr3.2:72058745-72058764 | MS.gene77475:intron | 50.0% | |
| TAGCCCACCGAAATTGACAC+CGG | - | chr3.2:72058783-72058802 | None:intergenic | 50.0% | |
| TGCAAGGCTGCTGATGAAGA+TGG | + | chr3.2:72059421-72059440 | MS.gene77475:CDS | 50.0% | |
| TGCCGCCATCACTATGTGAA+TGG | + | chr3.2:72059759-72059778 | MS.gene77475:CDS | 50.0% | |
| TGGTTCAAGGTAACCCCACT+TGG | + | chr3.2:72058689-72058708 | MS.gene77475:intron | 50.0% | |
| TGTGATCCCCATAAGGTCTC+GGG | + | chr3.2:72058746-72058765 | MS.gene77475:intron | 50.0% | |
| TTTCTCTCCCGTCTTCCTCA+AGG | - | chr3.2:72059697-72059716 | None:intergenic | 50.0% | |
| ! | CTTCCGGTGTCAATTTCGGT+GGG | + | chr3.2:72058777-72058796 | MS.gene77475:intron | 50.0% |
| !! | ACATAGTGATGGCGGCAAAC+CGG | - | chr3.2:72059756-72059775 | None:intergenic | 50.0% |
| !! | AGTCCGAAGTTGATAACGGC+AGG | + | chr3.2:72058241-72058260 | MS.gene77475:CDS | 50.0% |
| AATTGTCGTCGTTGCAGGCC+TGG | + | chr3.2:72059447-72059466 | MS.gene77475:CDS | 55.0% | |
| CAACTGGGGCTGCCTCAATA+AGG | - | chr3.2:72059848-72059867 | None:intergenic | 55.0% | |
| CACCACAAGGTCAACCCAAG+TGG | - | chr3.2:72058707-72058726 | None:intergenic | 55.0% | |
| CCACAAGGTCAACCCAAGTG+GGG | - | chr3.2:72058705-72058724 | None:intergenic | 55.0% | |
| CCACCGAAATTGACACCGGA+AGG | - | chr3.2:72058779-72058798 | None:intergenic | 55.0% | |
| ! | CCTTCCGGTGTCAATTTCGG+TGG | + | chr3.2:72058776-72058795 | MS.gene77475:intron | 55.0% |
| !! | GGTGGGCTAGTCCATAGATC+TGG | + | chr3.2:72058794-72058813 | MS.gene77475:intron | 55.0% |
| !! | CCCCACTTGGGTTGACCTTG+TGG | + | chr3.2:72058702-72058721 | MS.gene77475:intron | 60.0% |
| GTCGTCGTTGCAGGCCTGGA+TGG | + | chr3.2:72059451-72059470 | MS.gene77475:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 72058201 | 72059872 | 72058201 | ID=MS.gene77475 |
| chr3.2 | mRNA | 72058201 | 72059872 | 72058201 | ID=MS.gene77475.t1;Parent=MS.gene77475 |
| chr3.2 | exon | 72058201 | 72058262 | 72058201 | ID=MS.gene77475.t1.exon1;Parent=MS.gene77475.t1 |
| chr3.2 | CDS | 72058201 | 72058262 | 72058201 | ID=cds.MS.gene77475.t1;Parent=MS.gene77475.t1 |
| chr3.2 | exon | 72058392 | 72058536 | 72058392 | ID=MS.gene77475.t1.exon2;Parent=MS.gene77475.t1 |
| chr3.2 | CDS | 72058392 | 72058536 | 72058392 | ID=cds.MS.gene77475.t1;Parent=MS.gene77475.t1 |
| chr3.2 | exon | 72059364 | 72059485 | 72059364 | ID=MS.gene77475.t1.exon3;Parent=MS.gene77475.t1 |
| chr3.2 | CDS | 72059364 | 72059485 | 72059364 | ID=cds.MS.gene77475.t1;Parent=MS.gene77475.t1 |
| chr3.2 | exon | 72059596 | 72059872 | 72059596 | ID=MS.gene77475.t1.exon4;Parent=MS.gene77475.t1 |
| chr3.2 | CDS | 72059596 | 72059872 | 72059596 | ID=cds.MS.gene77475.t1;Parent=MS.gene77475.t1 |
| Gene Sequence |
| Protein sequence |
