Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79842.t1 | XP_013444769.1 | 96.2 | 211 | 7 | 1 | 32 | 241 | 33 | 243 | 8.20E-114 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79842.t1 | A0A072TMS4 | 96.2 | 211 | 7 | 1 | 32 | 241 | 33 | 243 | 5.9e-114 | 419.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene79842 | 0.803642 | 3.16E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene79842 | 0.855434 | 6.32E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene79842 | 0.814802 | 1.28E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene79842 | 0.802689 | 4.98E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene79842 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene050228 | MS.gene79842 | 0.802276 | 6.06E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene79842 | -0.803638 | 3.17E-49 | -1.69E-46 |
| MS.gene050398 | MS.gene79842 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene79842 | 0.810731 | 9.96E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene79842 | -0.82066 | 6.10E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene79842 | -0.803329 | 3.67E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene79842 | 0.821451 | 4.01E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene79842 | 0.83405 | 3.75E-56 | -1.69E-46 |
| MS.gene051582 | MS.gene79842 | 0.832205 | 1.08E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene79842 | 0.817319 | 3.51E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene79842 | 0.842132 | 3.12E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene79842 | -0.846251 | 2.44E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene79842 | 0.868869 | 4.74E-66 | -1.69E-46 |
| MS.gene052176 | MS.gene79842 | 0.8171 | 3.93E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene79842 | 0.808286 | 3.34E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene79842 | 0.807992 | 3.85E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene79842 | 0.849436 | 3.24E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene79842 | 0.824536 | 7.66E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene79842 | 0.807234 | 5.58E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene79842 | 0.853856 | 1.81E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene79842 | 0.81808 | 2.36E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene79842 | 0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene79842 | 0.821056 | 4.95E-53 | -1.69E-46 |
| MS.gene054983 | MS.gene79842 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene055217 | MS.gene79842 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene79842 | 0.8664 | 2.93E-65 | -1.69E-46 |
| MS.gene055701 | MS.gene79842 | 0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene79842 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene79842 | -0.803154 | 3.99E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene79842 | 0.832919 | 7.18E-56 | -1.69E-46 |
| MS.gene057396 | MS.gene79842 | 0.803004 | 4.29E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene79842 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene79842 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene79842 | 0.824371 | 8.37E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene79842 | 0.818516 | 1.88E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene79842 | 0.848639 | 5.39E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene79842 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene059609 | MS.gene79842 | 0.824811 | 6.59E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene79842 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene060940 | MS.gene79842 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene060942 | MS.gene79842 | 0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene79842 | 0.821399 | 4.12E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene79842 | 0.830779 | 2.42E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene79842 | -0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene79842 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene79842 | 0.800394 | 1.47E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79842.t1 | MTR_8g028545 | 93.004 | 243 | 15 | 2 | 1 | 241 | 1 | 243 | 4.27e-170 | 468 |
| MS.gene79842.t1 | MTR_4g037255 | 82.558 | 86 | 10 | 1 | 1 | 81 | 1 | 86 | 9.65e-43 | 140 |
| MS.gene79842.t1 | MTR_4g037265 | 53.435 | 131 | 22 | 2 | 111 | 241 | 91 | 182 | 7.33e-35 | 123 |
| MS.gene79842.t1 | MTR_1g081280 | 26.267 | 217 | 152 | 4 | 13 | 222 | 17 | 232 | 1.34e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79842.t1 | AT2G46100 | 65.550 | 209 | 63 | 2 | 28 | 227 | 27 | 235 | 4.61e-102 | 296 |
| MS.gene79842.t1 | AT2G46100 | 57.534 | 146 | 53 | 2 | 28 | 164 | 27 | 172 | 1.22e-51 | 167 |
| MS.gene79842.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 93 | 231 | 76 | 216 | 2.31e-22 | 91.7 |
| MS.gene79842.t1 | AT3G04890 | 34.965 | 143 | 87 | 3 | 93 | 231 | 80 | 220 | 2.60e-22 | 91.7 |
| MS.gene79842.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 93 | 207 | 76 | 202 | 2.04e-16 | 75.9 |
| MS.gene79842.t1 | AT3G04890 | 32.283 | 127 | 74 | 2 | 93 | 207 | 80 | 206 | 2.55e-16 | 75.9 |
Find 43 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGGAGACCTATTCTTTC+TGG | 0.087001 | 8.2:+68293019 | MS.gene79842:CDS |
| AAAAGGAACTGCACTAATTT+TGG | 0.093922 | 8.2:+68292552 | MS.gene79842:CDS |
| GTTGCTGTGACTCTTGATTT+TGG | 0.182046 | 8.2:-68291072 | None:intergenic |
| TTGTGGTGATGATGTTGTTT+TGG | 0.338335 | 8.2:-68291004 | None:intergenic |
| ACAGAACAATGTATTTCTTA+AGG | 0.349221 | 8.2:+68291093 | MS.gene79842:CDS |
| CTTTGTTCAAGCAAATTCTA+AGG | 0.368956 | 8.2:+68293499 | MS.gene79842:CDS |
| TGGTATAGTTCTGAGCTTCT+AGG | 0.369490 | 8.2:+68291121 | MS.gene79842:CDS |
| GCTGTATCTTGTCCTTTCCT+TGG | 0.372617 | 8.2:+68293002 | MS.gene79842:CDS |
| CTGTGACAAAATAAGATCTT+TGG | 0.390504 | 8.2:-68291255 | None:intergenic |
| CCATGACAGGATAAAGGAAT+TGG | 0.428536 | 8.2:+68292965 | MS.gene79842:intron |
| TTTGCTCCATGACAGGATAA+AGG | 0.440137 | 8.2:+68292959 | MS.gene79842:intron |
| CTTTCAGGCATGTGGAGCAT+TGG | 0.446746 | 8.2:+68293460 | MS.gene79842:intron |
| AAGGACTTCAACGTTTCAAA+AGG | 0.458374 | 8.2:+68292535 | MS.gene79842:CDS |
| TGAGATTTACCAGAAAGAAT+AGG | 0.461380 | 8.2:-68293028 | None:intergenic |
| GTGGTGATGGTTGTGACTAA+TGG | 0.469661 | 8.2:-68290963 | None:intergenic |
| TGAAGAGGATTGTGAATTTG+CGG | 0.489339 | 8.2:+68292494 | MS.gene79842:CDS |
| TTTAAGCTAAATCCCTTGCT+AGG | 0.497530 | 8.2:-68293522 | None:intergenic |
| TTATAATTTACCTATTCACT+TGG | 0.507238 | 8.2:-68293574 | None:intergenic |
| ATGTATTTCTTAAGGTTGCA+TGG | 0.514798 | 8.2:+68291101 | MS.gene79842:CDS |
| TGCATTGAATTTGAAACCTG+TGG | 0.519523 | 8.2:-68291039 | None:intergenic |
| GAAGCTTCTTCTTCAACAGA+TGG | 0.522340 | 8.2:-68291169 | None:intergenic |
| AGGTTTCAAATTCAATGCAA+TGG | 0.523136 | 8.2:+68291043 | MS.gene79842:CDS |
| TACAACAGAAGCACGATCAA+TGG | 0.528751 | 8.2:-68291212 | None:intergenic |
| CACAATCAGGAAAAGTATGC+AGG | 0.531502 | 8.2:+68293358 | MS.gene79842:CDS |
| CAACTATGAATCTTATGAAG+TGG | 0.531678 | 8.2:+68292592 | MS.gene79842:CDS |
| CCTGAAAACTTTCAGGCATG+TGG | 0.535655 | 8.2:+68293452 | MS.gene79842:intron |
| TGTGAATTTGCGGATCCAGC+GGG | 0.538988 | 8.2:+68292504 | MS.gene79842:CDS |
| CACATTGAATGCATATGAAG+AGG | 0.540073 | 8.2:+68292479 | MS.gene79842:CDS |
| AACTATGAATCTTATGAAGT+GGG | 0.541276 | 8.2:+68292593 | MS.gene79842:CDS |
| AGGATAAAGGAATTGGTCAC+TGG | 0.548719 | 8.2:+68292972 | MS.gene79842:intron |
| GCAAATTCTAAGGCCTAGCA+AGG | 0.551037 | 8.2:+68293509 | MS.gene79842:CDS |
| CTTCTTCAACAGATGGAGAA+CGG | 0.568481 | 8.2:-68291162 | None:intergenic |
| CCAGAAAGAATAGGTCTCCA+AGG | 0.570816 | 8.2:-68293019 | None:intergenic |
| AAGAATAGGTCTCCAAGGAA+AGG | 0.586808 | 8.2:-68293014 | None:intergenic |
| GCTTAAAAGATTATGTGACT+AGG | 0.588291 | 8.2:+68293538 | MS.gene79842:CDS |
| AGAACAAAGAAGTGTGGTGA+TGG | 0.594904 | 8.2:-68290976 | None:intergenic |
| TAAAAGATTATGTGACTAGG+TGG | 0.601952 | 8.2:+68293541 | MS.gene79842:CDS |
| TTGTGAATTTGCGGATCCAG+CGG | 0.612444 | 8.2:+68292503 | MS.gene79842:CDS |
| AGTCCTTTAAAAGATCCCGC+TGG | 0.619834 | 8.2:-68292519 | None:intergenic |
| TAATATATGCTGCAGCAACT+GGG | 0.621935 | 8.2:+68293313 | MS.gene79842:intron |
| CAAATTCTAAGGCCTAGCAA+GGG | 0.670959 | 8.2:+68293510 | MS.gene79842:CDS |
| ATGGTTTGAAGAAGTCTCTG+TGG | 0.682726 | 8.2:-68291193 | None:intergenic |
| GTGCAAAGAACAAAGAAGTG+TGG | 0.724805 | 8.2:-68290982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATCAATCTTTTTA+CGG | + | chr8.2:68292891-68292910 | MS.gene79842:intron | 10.0% |
| !!! | AATTTAATTTTGTTAATGAA+TGG | - | chr8.2:68293084-68293103 | None:intergenic | 10.0% |
| !!! | GTATTTTGATTATAATCAAA+TGG | + | chr8.2:68292415-68292434 | MS.gene79842:intron | 15.0% |
| !!! | TATAGTTTCAATTTTAAGTA+TGG | + | chr8.2:68291379-68291398 | MS.gene79842:intron | 15.0% |
| !!! | TCAAATTTGTTAGTTTAATT+AGG | - | chr8.2:68291887-68291906 | None:intergenic | 15.0% |
| !! | ACAATATCATAAATCTCTAA+CGG | + | chr8.2:68291959-68291978 | MS.gene79842:intron | 20.0% |
| !! | ATGTTCAAATTAACATGAAT+CGG | + | chr8.2:68293196-68293215 | MS.gene79842:intron | 20.0% |
| !!! | TACTACTCAATAATGTTTTA+GGG | + | chr8.2:68292247-68292266 | MS.gene79842:intron | 20.0% |
| !!! | TTTTGTATCAGTCATTATAT+AGG | - | chr8.2:68292364-68292383 | None:intergenic | 20.0% |
| ! | AACTATGAATCTTATGAAGT+GGG | + | chr8.2:68292593-68292612 | MS.gene79842:CDS | 25.0% |
| ! | ACAGAACAATGTATTTCTTA+AGG | + | chr8.2:68291093-68291112 | MS.gene79842:CDS | 25.0% |
| ! | AGAAAACAAAGGAAACAAAT+TGG | - | chr8.2:68291321-68291340 | None:intergenic | 25.0% |
| ! | CAAAATGAAGCTAATACAAT+TGG | + | chr8.2:68292379-68292398 | MS.gene79842:intron | 25.0% |
| ! | CTCAATCTATTAGATATACA+TGG | - | chr8.2:68293061-68293080 | None:intergenic | 25.0% |
| ! | TGCTTAAAATAGCAATACAA+AGG | + | chr8.2:68292080-68292099 | MS.gene79842:intron | 25.0% |
| ! | TGTTAAATGTAGTAAGAAGT+TGG | - | chr8.2:68291932-68291951 | None:intergenic | 25.0% |
| ! | TGTTCAAATTAACATGAATC+GGG | + | chr8.2:68293197-68293216 | MS.gene79842:intron | 25.0% |
| ! | TTATAATCAAATGGTTCACA+TGG | + | chr8.2:68292424-68292443 | MS.gene79842:intron | 25.0% |
| !! | AATATAGAGTTTTGCAACTT+AGG | + | chr8.2:68292665-68292684 | MS.gene79842:intron | 25.0% |
| !! | GTACTACTCAATAATGTTTT+AGG | + | chr8.2:68292246-68292265 | MS.gene79842:intron | 25.0% |
| !! | TTTAAAGTTCATCTTTCTCT+TGG | - | chr8.2:68291629-68291648 | None:intergenic | 25.0% |
| !!! | ATTGCTATTTTAAGCACTTA+CGG | - | chr8.2:68292076-68292095 | None:intergenic | 25.0% |
| !!! | TACTATTTTGATACACAATC+AGG | + | chr8.2:68293345-68293364 | MS.gene79842:CDS | 25.0% |
| !!! | TGTCTTTTTTACACATCATT+TGG | + | chr8.2:68291415-68291434 | MS.gene79842:intron | 25.0% |
| ACAATAACACAAAAATCCAC+AGG | + | chr8.2:68291023-68291042 | MS.gene79842:CDS | 30.0% | |
| ACGAAAAATAAATCCAAGAG+AGG | - | chr8.2:68293158-68293177 | None:intergenic | 30.0% | |
| AGGTTTCAAATTCAATGCAA+TGG | + | chr8.2:68291043-68291062 | MS.gene79842:CDS | 30.0% | |
| ATGTATTTCTTAAGGTTGCA+TGG | + | chr8.2:68291101-68291120 | MS.gene79842:CDS | 30.0% | |
| CAACTATGAATCTTATGAAG+TGG | + | chr8.2:68292592-68292611 | MS.gene79842:CDS | 30.0% | |
| CTAAATTCCTGAAAACTTTC+AGG | + | chr8.2:68293445-68293464 | MS.gene79842:intron | 30.0% | |
| CTGTGACAAAATAAGATCTT+TGG | - | chr8.2:68291258-68291277 | None:intergenic | 30.0% | |
| CTTTGTTCAAGCAAATTCTA+AGG | + | chr8.2:68293499-68293518 | MS.gene79842:CDS | 30.0% | |
| GCTTAAAAGATTATGTGACT+AGG | + | chr8.2:68293538-68293557 | MS.gene79842:CDS | 30.0% | |
| GTGTAATATCAAGAGTTACA+AGG | - | chr8.2:68292725-68292744 | None:intergenic | 30.0% | |
| TAAAAGATTATGTGACTAGG+TGG | + | chr8.2:68293541-68293560 | MS.gene79842:CDS | 30.0% | |
| TATGACTATTCAGAGTTGTT+AGG | + | chr8.2:68291460-68291479 | MS.gene79842:intron | 30.0% | |
| TATTTAGCAGCAACAAAAAG+CGG | + | chr8.2:68293254-68293273 | MS.gene79842:intron | 30.0% | |
| TGAGATTTACCAGAAAGAAT+AGG | - | chr8.2:68293031-68293050 | None:intergenic | 30.0% | |
| TTTAGCAACTCTATTCCTTT+AGG | - | chr8.2:68292840-68292859 | None:intergenic | 30.0% | |
| ! | AAAAGGAACTGCACTAATTT+TGG | + | chr8.2:68292552-68292571 | MS.gene79842:CDS | 30.0% |
| !! | GATGATTGATTTGTGGAAAA+AGG | + | chr8.2:68291437-68291456 | MS.gene79842:intron | 30.0% |
| !! | GTATCTTTTACTTTTGAACC+AGG | + | chr8.2:68292191-68292210 | MS.gene79842:intron | 30.0% |
| !! | TCATTTGGATGATTGATTTG+TGG | + | chr8.2:68291430-68291449 | MS.gene79842:intron | 30.0% |
| !! | TGTGGATTTTTGTGTTATTG+TGG | - | chr8.2:68291024-68291043 | None:intergenic | 30.0% |
| !!! | CAAAGATCTTATTTTGTCAC+AGG | + | chr8.2:68291256-68291275 | MS.gene79842:CDS | 30.0% |
| !!! | CTCAATAATGTTTTAGGGAT+TGG | + | chr8.2:68292252-68292271 | MS.gene79842:intron | 30.0% |
| !!! | TAGGTTTTAAGTTGTAGTTG+CGG | + | chr8.2:68292684-68292703 | MS.gene79842:intron | 30.0% |
| !!! | TGCTTTTTCTTGTCTTATGT+TGG | + | chr8.2:68291289-68291308 | MS.gene79842:intron | 30.0% |
| AAGGACTTCAACGTTTCAAA+AGG | + | chr8.2:68292535-68292554 | MS.gene79842:CDS | 35.0% | |
| AATCCAAACGCAGAAAACAA+AGG | - | chr8.2:68291332-68291351 | None:intergenic | 35.0% | |
| ACTCGTAGTTACTGATAAGT+GGG | + | chr8.2:68291490-68291509 | MS.gene79842:intron | 35.0% | |
| CACATTGAATGCATATGAAG+AGG | + | chr8.2:68292479-68292498 | MS.gene79842:CDS | 35.0% | |
| GATGATAAAGGTTTCTGATG+CGG | + | chr8.2:68292751-68292770 | MS.gene79842:intron | 35.0% | |
| GCAACAACAACAGAAAACAA+AGG | - | chr8.2:68291774-68291793 | None:intergenic | 35.0% | |
| TAATATATGCTGCAGCAACT+GGG | + | chr8.2:68293313-68293332 | MS.gene79842:intron | 35.0% | |
| TCAGGAGCAATGTTGTAATA+TGG | + | chr8.2:68292011-68292030 | MS.gene79842:intron | 35.0% | |
| TCTGCGTTTGGATTTAGATT+TGG | + | chr8.2:68291338-68291357 | MS.gene79842:intron | 35.0% | |
| TGAAGAGGATTGTGAATTTG+CGG | + | chr8.2:68292494-68292513 | MS.gene79842:CDS | 35.0% | |
| TGCTGCAGCATATATTAACA+TGG | - | chr8.2:68293310-68293329 | None:intergenic | 35.0% | |
| TTAATATATGCTGCAGCAAC+TGG | + | chr8.2:68293312-68293331 | MS.gene79842:intron | 35.0% | |
| TTACACGCAACTGATGATAA+AGG | + | chr8.2:68292739-68292758 | MS.gene79842:intron | 35.0% | |
| TTTAAGCTAAATCCCTTGCT+AGG | - | chr8.2:68293525-68293544 | None:intergenic | 35.0% | |
| ! | AACGTTTGTTGGGTTATGAT+TGG | + | chr8.2:68291530-68291549 | MS.gene79842:intron | 35.0% |
| ! | ACGTTTGTTGGGTTATGATT+GGG | + | chr8.2:68291531-68291550 | MS.gene79842:intron | 35.0% |
| ! | AGACAAGAAAAAGCATGTGA+TGG | - | chr8.2:68291284-68291303 | None:intergenic | 35.0% |
| ! | CACTAATTTTGGATCACTTC+TGG | + | chr8.2:68292563-68292582 | MS.gene79842:CDS | 35.0% |
| ! | CGGGTTTTTACTAGAATATG+TGG | + | chr8.2:68293216-68293235 | MS.gene79842:intron | 35.0% |
| ! | CTCTATTCCTTTAGGTTACA+CGG | - | chr8.2:68292832-68292851 | None:intergenic | 35.0% |
| ! | TATGAAGTGGGAAGATTTTG+AGG | + | chr8.2:68292605-68292624 | MS.gene79842:CDS | 35.0% |
| ! | TCAATCTTTTTACGGAGTGT+TGG | + | chr8.2:68292899-68292918 | MS.gene79842:intron | 35.0% |
| ! | TGCATTGAATTTGAAACCTG+TGG | - | chr8.2:68291042-68291061 | None:intergenic | 35.0% |
| !! | AAGCAGTAGAAAAGTGTTCA+AGG | - | chr8.2:68292640-68292659 | None:intergenic | 35.0% |
| !! | TGCTTGAACAAAGCCATTTT+TGG | - | chr8.2:68293492-68293511 | None:intergenic | 35.0% |
| !! | TTGTGGTGATGATGTTGTTT+TGG | - | chr8.2:68291007-68291026 | None:intergenic | 35.0% |
| !!! | TTTCCTTTGTTTTCTGCGTT+TGG | + | chr8.2:68291326-68291345 | MS.gene79842:intron | 35.0% |
| AAGAATAGGTCTCCAAGGAA+AGG | - | chr8.2:68293017-68293036 | None:intergenic | 40.0% | |
| AGGATAAAGGAATTGGTCAC+TGG | + | chr8.2:68292972-68292991 | MS.gene79842:intron | 40.0% | |
| ATGGTTTGAAGAAGTCTCTG+TGG | - | chr8.2:68291196-68291215 | None:intergenic | 40.0% | |
| CATTTGACTGAAACCTCTCT+TGG | + | chr8.2:68293142-68293161 | MS.gene79842:intron | 40.0% | |
| CCAATTCCTTTATCCTGTCA+TGG | - | chr8.2:68292968-68292987 | None:intergenic | 40.0% | |
| CCATGACAGGATAAAGGAAT+TGG | + | chr8.2:68292965-68292984 | MS.gene79842:intron | 40.0% | |
| CTTCTTCAACAGATGGAGAA+CGG | - | chr8.2:68291165-68291184 | None:intergenic | 40.0% | |
| GAAGCTTCTTCTTCAACAGA+TGG | - | chr8.2:68291172-68291191 | None:intergenic | 40.0% | |
| GACTCGTAGTTACTGATAAG+TGG | + | chr8.2:68291489-68291508 | MS.gene79842:intron | 40.0% | |
| GCAATGCTGAGAACAAATAG+AGG | + | chr8.2:68292274-68292293 | MS.gene79842:intron | 40.0% | |
| GCAGGTGAGAAAAATGTTCA+TGG | + | chr8.2:68293376-68293395 | MS.gene79842:intron | 40.0% | |
| GCATTGGAATGTGCCAAAAA+TGG | + | chr8.2:68293476-68293495 | MS.gene79842:CDS | 40.0% | |
| GTGCAAAGAACAAAGAAGTG+TGG | - | chr8.2:68290985-68291004 | None:intergenic | 40.0% | |
| GTTAGAATAGAACAGCAACC+TGG | - | chr8.2:68292212-68292231 | None:intergenic | 40.0% | |
| TCATACATTTGCTCCATGAC+AGG | + | chr8.2:68292952-68292971 | MS.gene79842:intron | 40.0% | |
| TTTGCTCCATGACAGGATAA+AGG | + | chr8.2:68292959-68292978 | MS.gene79842:intron | 40.0% | |
| TTTGTTGGGTTATGATTGGG+GGG | + | chr8.2:68291534-68291553 | MS.gene79842:intron | 40.0% | |
| ! | AGAACAAAGAAGTGTGGTGA+TGG | - | chr8.2:68290979-68290998 | None:intergenic | 40.0% |
| ! | CACAATCAGGAAAAGTATGC+AGG | + | chr8.2:68293358-68293377 | MS.gene79842:CDS | 40.0% |
| ! | CGTTTGTTGGGTTATGATTG+GGG | + | chr8.2:68291532-68291551 | MS.gene79842:intron | 40.0% |
| ! | GTTGCTGTGACTCTTGATTT+TGG | - | chr8.2:68291075-68291094 | None:intergenic | 40.0% |
| ! | GTTTGTTGGGTTATGATTGG+GGG | + | chr8.2:68291533-68291552 | MS.gene79842:intron | 40.0% |
| ! | TACAACAGAAGCACGATCAA+TGG | - | chr8.2:68291215-68291234 | None:intergenic | 40.0% |
| !! | CAAATTCTAAGGCCTAGCAA+GGG | + | chr8.2:68293510-68293529 | MS.gene79842:CDS | 40.0% |
| !! | TGGTATAGTTCTGAGCTTCT+AGG | + | chr8.2:68291121-68291140 | MS.gene79842:CDS | 40.0% |
| AACACTTTGCTCCAACAGTG+TGG | + | chr8.2:68291987-68292006 | MS.gene79842:intron | 45.0% | |
| ATCTATTCCTCCCAACTCTC+AGG | + | chr8.2:68292450-68292469 | MS.gene79842:intron | 45.0% | |
| ATGTGAGATCTCCTGAGAGT+TGG | - | chr8.2:68292464-68292483 | None:intergenic | 45.0% | |
| CCAGAAAGAATAGGTCTCCA+AGG | - | chr8.2:68293022-68293041 | None:intergenic | 45.0% | |
| CCTGAAAACTTTCAGGCATG+TGG | + | chr8.2:68293452-68293471 | MS.gene79842:intron | 45.0% | |
| CCTTGGAGACCTATTCTTTC+TGG | + | chr8.2:68293019-68293038 | MS.gene79842:CDS | 45.0% | |
| CTAAGCAGTTAAGGCTGCTT+AGG | - | chr8.2:68292809-68292828 | None:intergenic | 45.0% | |
| GAGCACAACAAAAAACTCGC+GGG | - | chr8.2:68291796-68291815 | None:intergenic | 45.0% | |
| GCTGTATCTTGTCCTTTCCT+TGG | + | chr8.2:68293002-68293021 | MS.gene79842:CDS | 45.0% | |
| GGAGCACAACAAAAAACTCG+CGG | - | chr8.2:68291797-68291816 | None:intergenic | 45.0% | |
| GTAGTTACTGATAAGTGGGC+AGG | + | chr8.2:68291494-68291513 | MS.gene79842:intron | 45.0% | |
| GTTACACGGCTAAGCAGTTA+AGG | - | chr8.2:68292818-68292837 | None:intergenic | 45.0% | |
| TGCTTAGCCGTGTAACCTAA+AGG | + | chr8.2:68292822-68292841 | MS.gene79842:intron | 45.0% | |
| TGTGAGATCTCCTGAGAGTT+GGG | - | chr8.2:68292463-68292482 | None:intergenic | 45.0% | |
| TTACTGATAAGTGGGCAGGT+CGG | + | chr8.2:68291498-68291517 | MS.gene79842:intron | 45.0% | |
| TTGTGAATTTGCGGATCCAG+CGG | + | chr8.2:68292503-68292522 | MS.gene79842:CDS | 45.0% | |
| ! | AATGGTTTGTGGAGATGGCT+TGG | + | chr8.2:68291713-68291732 | MS.gene79842:intron | 45.0% |
| ! | AGTCCTTTAAAAGATCCCGC+TGG | - | chr8.2:68292522-68292541 | None:intergenic | 45.0% |
| ! | CCACATGCCTGAAAGTTTTC+AGG | - | chr8.2:68293455-68293474 | None:intergenic | 45.0% |
| ! | GATCCAGCGGGATCTTTTAA+AGG | + | chr8.2:68292516-68292535 | MS.gene79842:CDS | 45.0% |
| ! | TGTGGAATGGTTTGTGGAGA+TGG | + | chr8.2:68291708-68291727 | MS.gene79842:intron | 45.0% |
| !! | GCAAATTCTAAGGCCTAGCA+AGG | + | chr8.2:68293509-68293528 | MS.gene79842:CDS | 45.0% |
| !! | GTGGTGATGGTTGTGACTAA+TGG | - | chr8.2:68290966-68290985 | None:intergenic | 45.0% |
| !!! | CTTGGTTTTTCAGGTTGTGG+GGG | + | chr8.2:68291731-68291750 | MS.gene79842:intron | 45.0% |
| !!! | GCTTGGTTTTTCAGGTTGTG+GGG | + | chr8.2:68291730-68291749 | MS.gene79842:intron | 45.0% |
| !!! | GGCTTGGTTTTTCAGGTTGT+GGG | + | chr8.2:68291729-68291748 | MS.gene79842:intron | 45.0% |
| !!! | TGGAGATGGCTTGGTTTTTC+AGG | + | chr8.2:68291722-68291741 | MS.gene79842:intron | 45.0% |
| !!! | TGGCTTGGTTTTTCAGGTTG+TGG | + | chr8.2:68291728-68291747 | MS.gene79842:intron | 45.0% |
| ACCCAACAAACGTTTGAGCC+TGG | - | chr8.2:68291524-68291543 | None:intergenic | 50.0% | |
| ATTCACGACGAGTGTGTGCA+AGG | - | chr8.2:68291818-68291837 | None:intergenic | 50.0% | |
| CTGTGTAAATACACCCGCGA+GGG | + | chr8.2:68291685-68291704 | MS.gene79842:intron | 50.0% | |
| CTTTCAGGCATGTGGAGCAT+TGG | + | chr8.2:68293460-68293479 | MS.gene79842:intron | 50.0% | |
| GCCAGGCTCAAACGTTTGTT+GGG | + | chr8.2:68291520-68291539 | MS.gene79842:intron | 50.0% | |
| TCTGTGTAAATACACCCGCG+AGG | + | chr8.2:68291684-68291703 | MS.gene79842:intron | 50.0% | |
| TGTGAATTTGCGGATCCAGC+GGG | + | chr8.2:68292504-68292523 | MS.gene79842:CDS | 50.0% | |
| TTGCTCCAACAGTGTGGTTC+AGG | + | chr8.2:68291993-68292012 | MS.gene79842:intron | 50.0% | |
| TTGCTCCTGAACCACACTGT+TGG | - | chr8.2:68292001-68292020 | None:intergenic | 50.0% | |
| AAACCATTCCACACCCTCGC+GGG | - | chr8.2:68291701-68291720 | None:intergenic | 55.0% | |
| ACTGCATCCCGCTTTGCAGT+CGG | + | chr8.2:68292104-68292123 | MS.gene79842:intron | 55.0% | |
| CAAACCATTCCACACCCTCG+CGG | - | chr8.2:68291702-68291721 | None:intergenic | 55.0% | |
| CTACGTCTCCGACTGCAAAG+CGG | - | chr8.2:68292115-68292134 | None:intergenic | 55.0% | |
| GAGATCTCCTGAGAGTTGGG+AGG | - | chr8.2:68292460-68292479 | None:intergenic | 55.0% | |
| GGCCAGGCTCAAACGTTTGT+TGG | + | chr8.2:68291519-68291538 | MS.gene79842:intron | 55.0% | |
| GGTTATGATTGGGGGGTTGC+TGG | + | chr8.2:68291541-68291560 | MS.gene79842:intron | 55.0% | |
| TAAATACACCCGCGAGGGTG+TGG | + | chr8.2:68291690-68291709 | MS.gene79842:intron | 55.0% | |
| TACGTCTCCGACTGCAAAGC+GGG | - | chr8.2:68292114-68292133 | None:intergenic | 55.0% | |
| TATGATTGGGGGGTTGCTGG+AGG | + | chr8.2:68291544-68291563 | MS.gene79842:intron | 55.0% | |
| ! | CGAGGGTGTGGAATGGTTTG+TGG | + | chr8.2:68291702-68291721 | MS.gene79842:intron | 55.0% |
| !! | TTTCAGGTTGTGGGGGTTGC+TGG | + | chr8.2:68291738-68291757 | MS.gene79842:intron | 55.0% |
| CGCTTTGCAGTCGGAGACGT+AGG | + | chr8.2:68292113-68292132 | MS.gene79842:intron | 60.0% | |
| GATAAGTGGGCAGGTCGGCC+AGG | + | chr8.2:68291503-68291522 | MS.gene79842:intron | 65.0% | |
| ! | ACACCCGCGAGGGTGTGGAA+TGG | + | chr8.2:68291695-68291714 | MS.gene79842:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 68290941 | 68293581 | 68290941 | ID=MS.gene79842 |
| chr8.2 | mRNA | 68290941 | 68293581 | 68290941 | ID=MS.gene79842.t1;Parent=MS.gene79842 |
| chr8.2 | exon | 68290941 | 68291277 | 68290941 | ID=MS.gene79842.t1.exon1;Parent=MS.gene79842.t1 |
| chr8.2 | CDS | 68290941 | 68291277 | 68290941 | ID=cds.MS.gene79842.t1;Parent=MS.gene79842.t1 |
| chr8.2 | exon | 68292472 | 68292626 | 68292472 | ID=MS.gene79842.t1.exon2;Parent=MS.gene79842.t1 |
| chr8.2 | CDS | 68292472 | 68292626 | 68292472 | ID=cds.MS.gene79842.t1;Parent=MS.gene79842.t1 |
| chr8.2 | exon | 68292974 | 68293040 | 68292974 | ID=MS.gene79842.t1.exon3;Parent=MS.gene79842.t1 |
| chr8.2 | CDS | 68292974 | 68293040 | 68292974 | ID=cds.MS.gene79842.t1;Parent=MS.gene79842.t1 |
| chr8.2 | exon | 68293328 | 68293379 | 68293328 | ID=MS.gene79842.t1.exon4;Parent=MS.gene79842.t1 |
| chr8.2 | CDS | 68293328 | 68293379 | 68293328 | ID=cds.MS.gene79842.t1;Parent=MS.gene79842.t1 |
| chr8.2 | exon | 68293467 | 68293581 | 68293467 | ID=MS.gene79842.t1.exon5;Parent=MS.gene79842.t1 |
| chr8.2 | CDS | 68293467 | 68293581 | 68293467 | ID=cds.MS.gene79842.t1;Parent=MS.gene79842.t1 |
| Gene Sequence |
| Protein sequence |
