AlfalfaGEDB | MS.gene87406

M. sativa cultivar XinJiangDaYe / MS.gene87406

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34 PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87406.t1	RHN45016.1	95.8	310	13	0	453	762	420	729	6.10E-179	637.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87406.t1	Q9Y222	25.8	256	173	7	483	733	156	399	5.1e-17	91.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87406.t1	A0A396GV57	95.8	310	13	0	453	762	420	729	4.4e-179	637.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene87406.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene87406	0.846856	1.67E-59	-1.69E-46
MS.gene049159	MS.gene87406	0.826699	2.35E-54	-1.69E-46
MS.gene049368	MS.gene87406	0.823449	1.38E-53	-1.69E-46
MS.gene049411	MS.gene87406	0.80586	1.09E-49	-1.69E-46
MS.gene049887	MS.gene87406	0.806282	8.87E-50	-1.69E-46
MS.gene050384	MS.gene87406	0.816623	5.03E-52	-1.69E-46
MS.gene050386	MS.gene87406	0.822865	1.88E-53	-1.69E-46
MS.gene050551	MS.gene87406	0.801763	7.72E-49	-1.69E-46
MS.gene050689	MS.gene87406	0.871484	6.60E-67	-1.69E-46
MS.gene050737	MS.gene87406	0.815182	1.05E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87406.t1	MTR_8g077990	82.413	779	34	6	1	762	1	693	0.0	1090
MS.gene87406.t1	MTR_1g076600	95.050	101	5	0	662	762	55	155	1.76e-66	217
MS.gene87406.t1	MTR_7g029435	93.478	92	6	0	671	762	1	92	7.53e-57	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87406.t1	AT5G41020	55.124	283	126	1	477	759	302	583	1.88e-112	353

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Find 128 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATAAAAGTGAAGA+TGG	0.511576	8.3:+26109702	MS.gene87406:CDS
AAAAGGACATTGGTCCCAAG+AGG	0.666914	8.3:+26111372	MS.gene87406:CDS
AAAAGGAGGGAAGGTGTAAG+TGG	0.481580	8.3:+26111212	MS.gene87406:CDS
AAAAGTGAAGATGGCGAGCA+AGG	0.538269	8.3:+26109711	MS.gene87406:CDS
AAACCTAGATCTGCTTGAGA+GGG	0.602034	8.3:+26111420	MS.gene87406:CDS
AAATGTCAAATTACACCCTG+AGG	0.666420	8.3:+26111105	MS.gene87406:CDS
AAATTACACCCTGAGGTTAG+CGG	0.591381	8.3:+26111112	MS.gene87406:CDS
AACAAACCTGTGATTTGTTG+AGG	0.586181	8.3:+26111835	MS.gene87406:CDS
AACAAATGATCCACCATATT+GGG	0.286872	8.3:+26111722	MS.gene87406:CDS
AACACACTTGAGGAAGGTGA+CGG	0.661228	8.3:+26109867	MS.gene87406:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGATCCACCATATT+GGG	+	chr8.3:26111722-26111741	MS.gene87406:CDS	30.0%
AAGAAAAACAAGAGAACTGA+AGG	+	chr8.3:26109582-26109601	MS.gene87406:CDS	30.0%
AAGAAGAAACTAATTGAGGA+AGG	+	chr8.3:26110416-26110435	MS.gene87406:CDS	30.0%
AATGAATGTGAAGATGATGA+TGG	+	chr8.3:26109804-26109823	MS.gene87406:CDS	30.0%
ATCATCATCTTCACATTCAT+TGG	-	chr8.3:26110378-26110397	None:intergenic	30.0%
CATACTTTGTTAGAAAAGGA+GGG	+	chr8.3:26111199-26111218	MS.gene87406:CDS	30.0%
CCTTATAAAAAATCACAGCA+TGG	+	chr8.3:26111451-26111470	MS.gene87406:CDS	30.0%
CTATATAGATTCTCATGGTT+TGG	+	chr8.3:26111057-26111076	MS.gene87406:CDS	30.0%
GAAAGAAGATGAAAAAGAAG+CGG	+	chr8.3:26109829-26109848	MS.gene87406:CDS	30.0%
GTGTCAGAAAAAGAAAAGTA+AGG	+	chr8.3:26110478-26110497	MS.gene87406:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	26109567	26111855	26109567	ID=MS.gene87406
chr8.3	mRNA	26109567	26111855	26109567	ID=MS.gene87406.t1;Parent=MS.gene87406
chr8.3	exon	26109567	26111855	26109567	ID=MS.gene87406.t1.exon1;Parent=MS.gene87406.t1
chr8.3	CDS	26109567	26111855	26109567	ID=cds.MS.gene87406.t1;Parent=MS.gene87406.t1

Gene Sequence

>MS.gene87406

ATGAAGACTCCGAGCAAGAAAAACAAGAGAACTGAAGGCGAAGAGGGTGAAACCAATGGAGGCGATCCATATATGTCCGAAAGCAATGTAACTGATCTGCCTTTGATCAAAAGGAATGGTGATCAACATTTGATCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAACTGAGTGAAGAAAGCAATCATAAGAAGTATAATGAGTTCAATAGCAATGAATGTGAAGATGATGACCAAGGAAAGAAGATGAAAAAGAAGCGGAAGCTAATTGAAGGAAACACACTTGAGGAAGGTGACGGCTTTAGAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGAAGAAATTGAGTGACGAAAGCAAACATAAGGAGTATAACGAGTTCAAAAGTAATGAATGTGAAGCTGATGACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAACACACTGAAGGAATGTAATGACTTCAGAAGCAATGATGATGAAGATGGTGAGCGAGAGAAAAAGATAAAGAAAAAGAAGAAGAAACCAAGTGAAGAAAGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGAATGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCACAAACTAATTGAAGGAAGCACACGTACTGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGAGGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCCAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAACTAATTGAGGAAGGTGGGAATCGTGACCAAGGCAAGACGAAGAAGAATAAATCGTGTCAGAAAAAGAAAAGTAAGGAGAACAATGATTTTAATAGCAAAGAAGGTGATGCTGATACTTGTTTCTCTGTCACTGAAGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTTACAAGCAAGTCTCCTAACTGTGCACATAATGAAACTCCTAGCAATGAAGGTGATGCTGATGCTTGTTTCTCTGTCACTGATGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTTACAAGCGAGTCTCCTAACTGTGCACAGAATGAAACTCCTAGCAATGAAGGTGATGCTGATGCTTGTTTCTCTGTCACTGATGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAACGACAGTTACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAAGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACATCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTTGACTATATAGATTCTCATGGTTTGGGAGACGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCTGAGGTTAGCGGCTGTTGGAAAGAAATTGCAAAAAGCATACCTGAGAGGCCTTATGAGAGTGTGTATCGACGTGCTCATACTTTGTTAGAAAAGGAGGGAAGGTGTAAGTGGACACCTGAAGAGCTTGAATTTATTGAAAAGACCTATGAGCAACATGGAGCTAGTTGGAGAGCAGTAGCTGACGCTTTGGGTAAAAGTCGAGCTCAGGTAAAAGATGCGTGGCGCAGATTGAAATATACCAAAGCAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTTGAGAGGGCTAAAGAGCCTTATAAAAAATCACAGCATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAGTTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGCAATTAACATCAACATTGGTTGCTAGTGGTGATTGGTGTGATACTGATGACTTCCGCTTGATAGACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTGTGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCCGCCAAGTCATTCATTGAGCAGGTTGAAGTTCTTGCAAAGAGATTCTGCCCCAACTTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>MS.gene87406.t1

MKTPSKKNKRTEGEEGETNGGDPYMSESNVTDLPLIKRNGDQHLIKSNKSEDGEQGKKKKKKKKLSEESNHKKYNEFNSNECEDDDQGKKMKKKRKLIEGNTLEEGDGFRSNEGDNGEQGKKKKKKKKLSDESKHKEYNEFKSNECEADDQGKKMKKKLIEGNTLKECNDFRSNDDEDGEREKKIKKKKKKPSEESTHKEYSEFKSNECEDDQGKKTKKKHKLIEGSTRTECNDFRSNGGEEGEQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKLIEEGGNRDQGKTKKNKSCQKKKSKENNDFNSKEGDADTCFSVTEVNDQGKKMKKKKKAKTVTSKSPNCAHNETPSNEGDADACFSVTDVNDQGKKMKKKKKAKTVTSESPNCAQNETPSNEGDADACFSVTDVNDQGKKMKKKKKATTVTSESPNCAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTSEEDEKIKAAVFDYIDSHGLGDEGLDMVLNVKLHPEVSGCWKEIAKSIPERPYESVYRRAHTLLEKEGRCKWTPEELEFIEKTYEQHGASWRAVADALGKSRAQVKDAWRRLKYTKAKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTLVASGDWCDTDDFRLIDALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC