Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87967.t1 | AFK46115.1 | 93.9 | 98 | 6 | 0 | 108 | 205 | 113 | 210 | 2.00E-44 | 189.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87967.t1 | Q9LM93 | 89.5 | 95 | 10 | 0 | 111 | 205 | 119 | 213 | 1.4e-43 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87967.t1 | A0A396IBZ2 | 93.9 | 98 | 6 | 0 | 108 | 205 | 113 | 210 | 1.4e-44 | 189.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene87967 | 0.824288 | 8.75E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene87967 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene87967 | 0.80311 | 4.08E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene87967 | 0.800814 | 1.21E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene87967 | 0.802834 | 4.65E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene87967 | 0.816889 | 4.38E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene87967 | 0.80111 | 1.05E-48 | -1.69E-46 |
| MS.gene051490 | MS.gene87967 | 0.807876 | 4.08E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene87967 | 0.831388 | 1.72E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene87967 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene87967 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene87967 | 0.820197 | 7.79E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene87967 | 0.812728 | 3.66E-51 | -1.69E-46 |
| MS.gene052867 | MS.gene87967 | 0.810742 | 9.91E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene87967 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene87967 | 0.837534 | 4.91E-57 | -1.69E-46 |
| MS.gene05414 | MS.gene87967 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene87967 | 0.813445 | 2.55E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene87967 | 0.821865 | 3.22E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene87967 | 0.827893 | 1.22E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene87967 | 0.809855 | 1.54E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene87967 | 0.815197 | 1.05E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene87967 | 0.802198 | 6.29E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene87967 | 0.826145 | 3.18E-54 | -1.69E-46 |
| MS.gene055589 | MS.gene87967 | 0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene87967 | 0.814569 | 1.44E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene87967 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene87967 | 0.816164 | 6.37E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene87967 | 0.807322 | 5.35E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene87967 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene87967 | 0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene87967 | 0.80301 | 4.28E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene87967 | 0.822862 | 1.89E-53 | -1.69E-46 |
| MS.gene056373 | MS.gene87967 | 0.805129 | 1.55E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene87967 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene05659 | MS.gene87967 | 0.807532 | 4.83E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene87967 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene87967 | 0.802813 | 4.70E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene87967 | 0.815652 | 8.28E-52 | -1.69E-46 |
| MS.gene058502 | MS.gene87967 | 0.807971 | 3.89E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene87967 | 0.80443 | 2.17E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene87967 | 0.807166 | 5.77E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene87967 | 0.808377 | 3.19E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene87967 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene87967 | 0.825548 | 4.41E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene87967 | 0.827481 | 1.53E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene87967 | 0.8073 | 5.41E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene87967 | 0.815969 | 7.04E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87967.t1 | MTR_4g087885 | 94.845 | 97 | 5 | 0 | 108 | 204 | 113 | 209 | 2.15e-59 | 192 |
| MS.gene87967.t1 | MTR_2g097220 | 91.579 | 95 | 8 | 0 | 111 | 205 | 110 | 204 | 2.78e-56 | 183 |
| MS.gene87967.t1 | MTR_1g061510 | 87.500 | 72 | 9 | 0 | 201 | 272 | 66 | 137 | 3.63e-35 | 134 |
| MS.gene87967.t1 | MTR_7g103590 | 80.556 | 72 | 14 | 0 | 201 | 272 | 75 | 146 | 1.56e-32 | 127 |
| MS.gene87967.t1 | MTR_1g061270 | 78.947 | 76 | 16 | 0 | 198 | 273 | 63 | 138 | 2.64e-32 | 126 |
| MS.gene87967.t1 | MTR_1g061340 | 76.316 | 76 | 18 | 0 | 198 | 273 | 63 | 138 | 1.94e-30 | 121 |
| MS.gene87967.t1 | MTR_1g061280 | 81.690 | 71 | 13 | 0 | 198 | 268 | 63 | 133 | 2.16e-30 | 121 |
| MS.gene87967.t1 | MTR_1g492700 | 76.812 | 69 | 15 | 1 | 201 | 268 | 72 | 140 | 5.88e-29 | 117 |
| MS.gene87967.t1 | MTR_4g055520 | 62.500 | 72 | 27 | 0 | 201 | 272 | 75 | 146 | 7.11e-26 | 108 |
| MS.gene87967.t1 | MTR_4g055520 | 62.500 | 72 | 27 | 0 | 201 | 272 | 75 | 146 | 8.99e-26 | 108 |
| MS.gene87967.t1 | MTR_7g101950 | 56.923 | 65 | 27 | 1 | 208 | 272 | 79 | 142 | 5.33e-19 | 88.2 |
| MS.gene87967.t1 | MTR_6g007807 | 65.385 | 52 | 18 | 0 | 220 | 271 | 201 | 252 | 8.43e-17 | 81.6 |
| MS.gene87967.t1 | MTR_4g006010 | 50.769 | 65 | 32 | 0 | 209 | 273 | 224 | 288 | 1.47e-16 | 81.3 |
| MS.gene87967.t1 | MTR_3g109040 | 54.286 | 70 | 31 | 1 | 205 | 273 | 204 | 273 | 7.46e-16 | 79.0 |
| MS.gene87967.t1 | MTR_3g109040 | 54.286 | 70 | 31 | 1 | 205 | 273 | 193 | 262 | 7.47e-16 | 79.0 |
| MS.gene87967.t1 | MTR_3g103500 | 55.000 | 60 | 26 | 1 | 213 | 271 | 227 | 286 | 8.44e-14 | 72.4 |
| MS.gene87967.t1 | MTR_8g464410 | 46.218 | 119 | 53 | 3 | 4 | 114 | 87 | 202 | 9.15e-14 | 72.0 |
| MS.gene87967.t1 | MTR_3g103500 | 55.000 | 60 | 26 | 1 | 213 | 271 | 227 | 286 | 1.06e-13 | 72.4 |
| MS.gene87967.t1 | MTR_8g012320 | 41.558 | 77 | 42 | 1 | 197 | 273 | 218 | 291 | 6.13e-12 | 67.0 |
| MS.gene87967.t1 | MTR_4g055520 | 68.421 | 38 | 12 | 0 | 235 | 272 | 29 | 66 | 2.99e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87967.t1 | AT1G20575 | 89.474 | 95 | 10 | 0 | 111 | 205 | 119 | 213 | 7.20e-56 | 182 |
| MS.gene87967.t1 | AT5G03760 | 75.000 | 72 | 18 | 0 | 201 | 272 | 76 | 147 | 7.35e-31 | 122 |
| MS.gene87967.t1 | AT5G16190 | 67.143 | 70 | 23 | 0 | 198 | 267 | 50 | 119 | 4.96e-27 | 111 |
| MS.gene87967.t1 | AT5G16190 | 67.143 | 70 | 23 | 0 | 198 | 267 | 50 | 119 | 8.00e-27 | 110 |
| MS.gene87967.t1 | AT5G22740 | 66.667 | 72 | 24 | 0 | 201 | 272 | 76 | 147 | 8.39e-27 | 111 |
| MS.gene87967.t1 | AT4G13410 | 64.789 | 71 | 25 | 0 | 201 | 271 | 90 | 160 | 9.35e-27 | 109 |
| MS.gene87967.t1 | AT5G16190 | 67.143 | 70 | 23 | 0 | 198 | 267 | 50 | 119 | 9.94e-27 | 110 |
| MS.gene87967.t1 | AT4G13410 | 64.789 | 71 | 25 | 0 | 201 | 271 | 90 | 160 | 3.96e-26 | 109 |
| MS.gene87967.t1 | AT1G24070 | 63.014 | 73 | 27 | 0 | 201 | 273 | 101 | 173 | 4.79e-26 | 107 |
| MS.gene87967.t1 | AT1G24070 | 63.014 | 73 | 27 | 0 | 201 | 273 | 101 | 173 | 1.26e-25 | 107 |
| MS.gene87967.t1 | AT1G23480 | 57.647 | 85 | 32 | 1 | 189 | 273 | 19 | 99 | 3.99e-25 | 105 |
| MS.gene87967.t1 | AT1G23480 | 57.647 | 85 | 32 | 1 | 189 | 273 | 91 | 171 | 5.86e-25 | 105 |
| MS.gene87967.t1 | AT1G23480 | 57.647 | 85 | 32 | 1 | 189 | 273 | 91 | 171 | 5.86e-25 | 105 |
| MS.gene87967.t1 | AT5G16190 | 74.138 | 58 | 15 | 0 | 210 | 267 | 1 | 58 | 8.93e-25 | 104 |
| MS.gene87967.t1 | AT2G35650 | 60.811 | 74 | 29 | 0 | 198 | 271 | 23 | 96 | 4.43e-23 | 100 |
| MS.gene87967.t1 | AT2G35650 | 60.811 | 74 | 29 | 0 | 198 | 271 | 23 | 96 | 4.43e-23 | 100 |
| MS.gene87967.t1 | AT2G35650 | 60.811 | 74 | 29 | 0 | 198 | 271 | 95 | 168 | 4.88e-23 | 100 |
| MS.gene87967.t1 | AT3G56000 | 63.636 | 66 | 22 | 2 | 201 | 264 | 69 | 134 | 2.25e-20 | 92.4 |
| MS.gene87967.t1 | AT4G31590 | 59.677 | 62 | 25 | 0 | 212 | 273 | 217 | 278 | 1.85e-17 | 84.0 |
| MS.gene87967.t1 | AT2G24630 | 60.000 | 60 | 24 | 0 | 212 | 271 | 217 | 276 | 8.13e-17 | 82.0 |
| MS.gene87967.t1 | AT2G24630 | 60.000 | 60 | 24 | 0 | 212 | 271 | 217 | 276 | 8.13e-17 | 82.0 |
| MS.gene87967.t1 | AT3G28180 | 66.038 | 53 | 18 | 0 | 219 | 271 | 196 | 248 | 1.15e-16 | 81.6 |
| MS.gene87967.t1 | AT4G07960 | 57.377 | 61 | 24 | 1 | 213 | 271 | 230 | 290 | 3.02e-14 | 74.3 |
| MS.gene87967.t1 | AT4G07960 | 57.377 | 61 | 24 | 1 | 213 | 271 | 230 | 290 | 3.02e-14 | 74.3 |
| MS.gene87967.t1 | AT3G07330 | 43.038 | 79 | 41 | 2 | 197 | 273 | 196 | 272 | 4.61e-14 | 73.6 |
| MS.gene87967.t1 | AT3G07330 | 43.038 | 79 | 41 | 2 | 197 | 273 | 196 | 272 | 4.61e-14 | 73.6 |
| MS.gene87967.t1 | AT5G54290 | 93.750 | 32 | 2 | 0 | 83 | 114 | 141 | 172 | 5.31e-11 | 63.5 |
| MS.gene87967.t1 | AT5G54290 | 93.750 | 32 | 2 | 0 | 83 | 114 | 142 | 173 | 5.48e-11 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGACAGGGTCTTTC+AGG | 0.128725 | 6.1:+10976635 | MS.gene87967:CDS |
| TATAATATGGCAGGGGCTTT+TGG | 0.205217 | 6.1:+10975482 | MS.gene87967:intron |
| ATGAAAAGTTGAAGATTATT+AGG | 0.209007 | 6.1:-10974906 | None:intergenic |
| TTGTTATTTGTAGACTTTAT+AGG | 0.210565 | 6.1:+10976745 | MS.gene87967:intron |
| CATTTGATGATTAGATAAAT+TGG | 0.211780 | 6.1:+10977511 | MS.gene87967:intron |
| GATAAATTGGGAGACTATTA+AGG | 0.249440 | 6.1:+10977524 | MS.gene87967:intron |
| TCTACATCTAAAAGTCCTTT+AGG | 0.314553 | 6.1:+10978884 | MS.gene87967:CDS |
| ACCGGGACTCGTTATGTTAA+AGG | 0.314815 | 6.1:+10976523 | MS.gene87967:CDS |
| TTCAACTGATCCAACAATTA+AGG | 0.316021 | 6.1:+10977799 | MS.gene87967:CDS |
| TTCAGAAAACAGTTGGAAAC+TGG | 0.354795 | 6.1:+10976487 | MS.gene87967:intron |
| AGCAACAACACCTCTTCAAT+AGG | 0.361087 | 6.1:-10976861 | None:intergenic |
| ACAGGCCAATGAAGCAGTTC+TGG | 0.362445 | 6.1:+10975178 | MS.gene87967:CDS |
| TTAGTCCAGAACTGCTTCAT+TGG | 0.381339 | 6.1:-10975183 | None:intergenic |
| TATTAGTTGCTGTGTTAGTA+AGG | 0.383935 | 6.1:+10976788 | MS.gene87967:CDS |
| CATTCAGATGGCACTAGGTT+AGG | 0.384450 | 6.1:+10978917 | MS.gene87967:CDS |
| TTGAAGATTATTAGGTTTGA+AGG | 0.387343 | 6.1:-10974898 | None:intergenic |
| ATTTGATGATTAGATAAATT+GGG | 0.393042 | 6.1:+10977512 | MS.gene87967:intron |
| CAGGTTTATCAGTTATCAAT+TGG | 0.395004 | 6.1:+10977719 | MS.gene87967:intron |
| AGCATGTATACCTTAATTGT+TGG | 0.397940 | 6.1:-10977809 | None:intergenic |
| ATTAAGGATGATGTTGAGTT+GGG | 0.429632 | 6.1:+10977540 | MS.gene87967:CDS |
| TGCTTCATTGGCCTGTTGTC+CGG | 0.430538 | 6.1:-10975171 | None:intergenic |
| ACTGGTGCTGATATAGTTAC+CGG | 0.430856 | 6.1:+10976505 | MS.gene87967:CDS |
| GGAGGTATCGGTGACTGGTT+TGG | 0.436821 | 6.1:+10975131 | MS.gene87967:CDS |
| GTGCTGCATGTGGACTCAGC+TGG | 0.446224 | 6.1:+10977741 | MS.gene87967:CDS |
| TAAGGGATATGTCTTTCAAA+TGG | 0.448303 | 6.1:+10976806 | MS.gene87967:CDS |
| CGACCTGAGCTGCTCGGATA+AGG | 0.450091 | 6.1:-10978851 | None:intergenic |
| CCTGGTGTCTCAGATTTGAC+AGG | 0.470074 | 6.1:+10976625 | MS.gene87967:CDS |
| TATTAAGGATGATGTTGAGT+TGG | 0.472942 | 6.1:+10977539 | MS.gene87967:CDS |
| ACCTCTCTTTCATTATACAT+TGG | 0.479636 | 6.1:-10977597 | None:intergenic |
| CTGATGGAGGTATCGGTGAC+TGG | 0.479943 | 6.1:+10975126 | MS.gene87967:CDS |
| AAGGTGGTGGTGTGCATGGA+TGG | 0.480388 | 6.1:+10976542 | MS.gene87967:CDS |
| ATAGTTCGAGCATCCAGAAA+AGG | 0.481126 | 6.1:+10976834 | MS.gene87967:CDS |
| TGTATGATGATTCTATCAAA+AGG | 0.486622 | 6.1:-10977764 | None:intergenic |
| CGGTAACACACTAAGCGTAC+AGG | 0.494081 | 6.1:-10975375 | None:intergenic |
| CACTAAGCGTACAGGGAGAA+AGG | 0.494224 | 6.1:-10975367 | None:intergenic |
| CAGAACATTTAAAATGCCTA+AGG | 0.504118 | 6.1:+10978784 | MS.gene87967:CDS |
| GCAACAACACCTCTTCAATA+GGG | 0.507044 | 6.1:-10976860 | None:intergenic |
| CCGCTAACCCTCGGTTACAT+TGG | 0.512502 | 6.1:+10975395 | MS.gene87967:CDS |
| GTTAAAGGTGGTGGTGTGCA+TGG | 0.512654 | 6.1:+10976538 | MS.gene87967:CDS |
| ATTAGTTGCTGTGTTAGTAA+GGG | 0.512925 | 6.1:+10976789 | MS.gene87967:CDS |
| GGGAAACTCTAATTACCCTA+TGG | 0.513447 | 6.1:+10977560 | MS.gene87967:CDS |
| TCACCTTATCCGAGCAGCTC+AGG | 0.516355 | 6.1:+10978848 | MS.gene87967:CDS |
| CCAATGTAACCGAGGGTTAG+CGG | 0.518246 | 6.1:-10975395 | None:intergenic |
| ACTCGTTATGTTAAAGGTGG+TGG | 0.518521 | 6.1:+10976529 | MS.gene87967:CDS |
| ACTTTGGCTGATGGAGGTAT+CGG | 0.521550 | 6.1:+10975119 | MS.gene87967:CDS |
| GAATGTGACATGCCTCCTAA+AGG | 0.528180 | 6.1:-10978899 | None:intergenic |
| GGAACTTGAACAAGAACCAT+AGG | 0.529284 | 6.1:-10977576 | None:intergenic |
| ACCTTTAACATAACGAGTCC+CGG | 0.539507 | 6.1:-10976524 | None:intergenic |
| TAGTTCGAGCATCCAGAAAA+GGG | 0.542215 | 6.1:+10976835 | MS.gene87967:CDS |
| CACCTTCTTTCTCAAAGCTA+CGG | 0.550843 | 6.1:+10974871 | MS.gene87967:CDS |
| TTATGCGCAAACTAACAAGC+AGG | 0.553714 | 6.1:+10976569 | MS.gene87967:CDS |
| AAGCGTACAGGGAGAAAGGC+TGG | 0.557765 | 6.1:-10975363 | None:intergenic |
| GGTATCGGTGACTGGTTTGG+AGG | 0.560742 | 6.1:+10975134 | MS.gene87967:CDS |
| CTGGTGTCTCAGATTTGACA+GGG | 0.567238 | 6.1:+10976626 | MS.gene87967:CDS |
| CGTAGCTTTGAGAAAGAAGG+TGG | 0.572854 | 6.1:-10974870 | None:intergenic |
| GACCGTAGCTTTGAGAAAGA+AGG | 0.573551 | 6.1:-10974873 | None:intergenic |
| CTGACGCGACCTGAGCTGCT+CGG | 0.587082 | 6.1:-10978857 | None:intergenic |
| AGTGTGTTACCGCTAACCCT+CGG | 0.587650 | 6.1:+10975386 | MS.gene87967:CDS |
| GGTAACACACTAAGCGTACA+GGG | 0.590535 | 6.1:-10975374 | None:intergenic |
| TTATCAATTGGTGCTGCATG+TGG | 0.591381 | 6.1:+10977731 | MS.gene87967:CDS |
| CTGGTGCTGATATAGTTACC+GGG | 0.595385 | 6.1:+10976506 | MS.gene87967:CDS |
| TCCAATGTATAATGAAAGAG+AGG | 0.595576 | 6.1:+10977596 | MS.gene87967:CDS |
| TGTCACATTCAGATGGCACT+AGG | 0.596244 | 6.1:+10978912 | MS.gene87967:CDS |
| GGAGGCATGTCACATTCAGA+TGG | 0.596372 | 6.1:+10978905 | MS.gene87967:CDS |
| ACATCTAAAAGTCCTTTAGG+AGG | 0.613987 | 6.1:+10978887 | MS.gene87967:CDS |
| GAACTTGAACAAGAACCATA+GGG | 0.618606 | 6.1:-10977575 | None:intergenic |
| TATGCGCAAACTAACAAGCA+GGG | 0.621645 | 6.1:+10976570 | MS.gene87967:CDS |
| CCTGTCAAATCTGAGACACC+AGG | 0.627249 | 6.1:-10976625 | None:intergenic |
| TGCCTAAGGAGAGAAAAGAT+AGG | 0.631941 | 6.1:+10978798 | MS.gene87967:CDS |
| AAAAGGGTACCCTATTGAAG+AGG | 0.647684 | 6.1:+10976851 | MS.gene87967:CDS |
| CAAGCTTACCAATGTAACCG+AGG | 0.655920 | 6.1:-10975403 | None:intergenic |
| ATGCGCAAACTAACAAGCAG+GGG | 0.658767 | 6.1:+10976571 | MS.gene87967:CDS |
| TAGGTTCGCATGTGAGTGTG+TGG | 0.674887 | 6.1:+10978936 | MS.gene87967:CDS |
| AAGCTTACCAATGTAACCGA+GGG | 0.679976 | 6.1:-10975402 | None:intergenic |
| GGGACTCGTTATGTTAAAGG+TGG | 0.685030 | 6.1:+10976526 | MS.gene87967:CDS |
| GTAGCTTTGAGAAAGAAGGT+GGG | 0.730352 | 6.1:-10974869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATAAACTAATTTAAA+AGG | - | chr6.1:10976291-10976310 | None:intergenic | 10.0% |
| !! | ATCAATAAACTAATTTAAAA+GGG | - | chr6.1:10976290-10976309 | None:intergenic | 10.0% |
| !!! | TGTTAATTGTTTTTTTTTTT+TGG | + | chr6.1:10978590-10978609 | MS.gene87967:intron | 10.0% |
| !! | ATATATCAAGATGTTATAAA+TGG | - | chr6.1:10976989-10977008 | None:intergenic | 15.0% |
| !! | ATGATAGAAATAAAATCATT+CGG | - | chr6.1:10975249-10975268 | None:intergenic | 15.0% |
| !! | TTTATATATTATATTCATGC+AGG | + | chr6.1:10976264-10976283 | MS.gene87967:intron | 15.0% |
| !!! | ATCACATTTTAATTGTTTAA+TGG | + | chr6.1:10978618-10978637 | MS.gene87967:intron | 15.0% |
| !!! | ATTTGATGATTAGATAAATT+GGG | + | chr6.1:10977512-10977531 | MS.gene87967:intron | 15.0% |
| !!! | TCTATTTTAGAAATATTTGA+TGG | - | chr6.1:10977976-10977995 | None:intergenic | 15.0% |
| !! | AAACAAATGAAAAGAAACAT+TGG | - | chr6.1:10975026-10975045 | None:intergenic | 20.0% |
| !! | AATTAACTAGAAATTAACTC+GGG | - | chr6.1:10975544-10975563 | None:intergenic | 20.0% |
| !! | ATAATTGAAACTTGTGTATA+TGG | + | chr6.1:10975277-10975296 | MS.gene87967:intron | 20.0% |
| !! | ATGAAAAGTTGAAGATTATT+AGG | - | chr6.1:10974909-10974928 | None:intergenic | 20.0% |
| !! | ATTCTATTCCATATATTGAT+AGG | + | chr6.1:10977311-10977330 | MS.gene87967:intron | 20.0% |
| !! | CAATTAACTAGAAATTAACT+CGG | - | chr6.1:10975545-10975564 | None:intergenic | 20.0% |
| !! | CTAAAATCTCTGTTATAATA+TGG | + | chr6.1:10975469-10975488 | MS.gene87967:intron | 20.0% |
| !! | GAAGAAAAAAAAAATGTTGA+TGG | + | chr6.1:10975979-10975998 | MS.gene87967:intron | 20.0% |
| !! | GAATATATAGTATGAAGTTA+GGG | + | chr6.1:10978133-10978152 | MS.gene87967:intron | 20.0% |
| !! | TACAAATGAATATACTTTCA+GGG | + | chr6.1:10976063-10976082 | MS.gene87967:intron | 20.0% |
| !! | TGAAAACATGTACATATTAT+GGG | + | chr6.1:10975740-10975759 | MS.gene87967:intron | 20.0% |
| !! | TGAATATATAGTATGAAGTT+AGG | + | chr6.1:10978132-10978151 | MS.gene87967:intron | 20.0% |
| !! | TGATCAATTGTAACTTAATA+AGG | - | chr6.1:10977211-10977230 | None:intergenic | 20.0% |
| !! | TTGAAAACATGTACATATTA+TGG | + | chr6.1:10975739-10975758 | MS.gene87967:intron | 20.0% |
| !!! | AAGAATTGTGTTTTTTAATC+AGG | + | chr6.1:10975076-10975095 | MS.gene87967:CDS | 20.0% |
| !!! | ATGAATGTAAATCTGATTTT+AGG | + | chr6.1:10975957-10975976 | MS.gene87967:intron | 20.0% |
| !!! | CATTTGATGATTAGATAAAT+TGG | + | chr6.1:10977511-10977530 | MS.gene87967:intron | 20.0% |
| !!! | CTTTGAAATTGACATAAAAA+TGG | + | chr6.1:10977687-10977706 | MS.gene87967:intron | 20.0% |
| !!! | CTTTTCATTTGTTTATTTTC+CGG | + | chr6.1:10975032-10975051 | MS.gene87967:intron | 20.0% |
| !!! | TAGTCATTTTAAAACGTTTT+TGG | - | chr6.1:10975452-10975471 | None:intergenic | 20.0% |
| !!! | TCACAAGTTTTATGAATAAA+AGG | - | chr6.1:10977048-10977067 | None:intergenic | 20.0% |
| !!! | TTGTTATTTGTAGACTTTAT+AGG | + | chr6.1:10976745-10976764 | MS.gene87967:intron | 20.0% |
| !!! | TTTGTTATCATTCTTCATTA+AGG | + | chr6.1:10975709-10975728 | MS.gene87967:intron | 20.0% |
| !!! | TTTTCATTTGTTTATTTTCC+GGG | + | chr6.1:10975033-10975052 | MS.gene87967:intron | 20.0% |
| ! | AAAACTTGTGAACTAAATGA+TGG | + | chr6.1:10977057-10977076 | MS.gene87967:intron | 25.0% |
| ! | AAACAATTAACATGTGATGA+AGG | - | chr6.1:10978582-10978601 | None:intergenic | 25.0% |
| ! | ACAAATGAATATACTTTCAG+GGG | + | chr6.1:10976064-10976083 | MS.gene87967:intron | 25.0% |
| ! | ACACAAGTTTCAATTATTAG+TGG | - | chr6.1:10975274-10975293 | None:intergenic | 25.0% |
| ! | AGAATCCAATATATTAGTTG+CGG | - | chr6.1:10978495-10978514 | None:intergenic | 25.0% |
| ! | AGGGTTAAGTTTGTATTAAA+AGG | + | chr6.1:10978023-10978042 | MS.gene87967:intron | 25.0% |
| ! | ATAAAAATGGTTCAAAATGC+AGG | + | chr6.1:10977700-10977719 | MS.gene87967:intron | 25.0% |
| ! | ATAGAAATAAAATCATTCGG+AGG | - | chr6.1:10975246-10975265 | None:intergenic | 25.0% |
| ! | ATATGCATATTCGATTACAA+TGG | - | chr6.1:10978382-10978401 | None:intergenic | 25.0% |
| ! | ATCATCATCAGTTTATCTTA+AGG | - | chr6.1:10975688-10975707 | None:intergenic | 25.0% |
| ! | CAATATCAGGATTATTAACA+AGG | - | chr6.1:10978295-10978314 | None:intergenic | 25.0% |
| ! | CGTTATTAACAAATTATTGC+CGG | - | chr6.1:10976415-10976434 | None:intergenic | 25.0% |
| ! | CTACAAATGAATATACTTTC+AGG | + | chr6.1:10976062-10976081 | MS.gene87967:intron | 25.0% |
| ! | CTTGTTAATAATCCTGATAT+TGG | + | chr6.1:10978293-10978312 | MS.gene87967:intron | 25.0% |
| ! | GACACTATAGTCATTTATAT+CGG | + | chr6.1:10977936-10977955 | MS.gene87967:intron | 25.0% |
| ! | GGTCACAAATTACATTAAAA+TGG | - | chr6.1:10977645-10977664 | None:intergenic | 25.0% |
| ! | GTAGTCAATTATAAATCCTA+TGG | - | chr6.1:10977099-10977118 | None:intergenic | 25.0% |
| ! | TAAATCCTATGGCATTAAAA+AGG | - | chr6.1:10977088-10977107 | None:intergenic | 25.0% |
| ! | TCTTATTCAACTTTACAGTT+TGG | + | chr6.1:10975313-10975332 | MS.gene87967:intron | 25.0% |
| ! | TGTACATATTATGGGAATTT+AGG | + | chr6.1:10975748-10975767 | MS.gene87967:intron | 25.0% |
| ! | TGTATGATGATTCTATCAAA+AGG | - | chr6.1:10977767-10977786 | None:intergenic | 25.0% |
| ! | TTCTATTCTTTACATTAACC+TGG | + | chr6.1:10976894-10976913 | MS.gene87967:intron | 25.0% |
| ! | TTGAAGATTATTAGGTTTGA+AGG | - | chr6.1:10974901-10974920 | None:intergenic | 25.0% |
| !! | AAAAGGTACATGTTAGATAT+TGG | - | chr6.1:10977031-10977050 | None:intergenic | 25.0% |
| !! | AGATATTTTCTCTTCTCTTT+TGG | - | chr6.1:10976106-10976125 | None:intergenic | 25.0% |
| !! | ATATTGGTTATTGTTGTTGT+TGG | + | chr6.1:10978309-10978328 | MS.gene87967:intron | 25.0% |
| !! | TAGACCAAAAGTGTAATTTA+AGG | - | chr6.1:10977860-10977879 | None:intergenic | 25.0% |
| !! | TCTTCCAAGTAAAAGTATAA+TGG | + | chr6.1:10976026-10976045 | MS.gene87967:intron | 25.0% |
| !! | TTTTCACCTAAGTTTTTCTT+TGG | + | chr6.1:10977891-10977910 | MS.gene87967:intron | 25.0% |
| !!! | ACTGTTTTCTGAAGAAAAAA+AGG | - | chr6.1:10976480-10976499 | None:intergenic | 25.0% |
| !!! | CAGAAAGTTATGCTTTAAAA+AGG | - | chr6.1:10977666-10977685 | None:intergenic | 25.0% |
| !!! | CTGTTTTCTGAAGAAAAAAA+GGG | - | chr6.1:10976479-10976498 | None:intergenic | 25.0% |
| !!! | TCTAATTACAGGATTTGTTT+TGG | + | chr6.1:10978654-10978673 | MS.gene87967:intron | 25.0% |
| !!! | TTTCATTTGTTTATTTTCCG+GGG | + | chr6.1:10975034-10975053 | MS.gene87967:intron | 25.0% |
| !!! | TTTTTTCTTCAGAAAACAGT+TGG | + | chr6.1:10976480-10976499 | MS.gene87967:intron | 25.0% |
| AATAGAAATGGTTACAAAGC+AGG | + | chr6.1:10978158-10978177 | MS.gene87967:intron | 30.0% | |
| AATATATTAGTTGCGGAAAG+AGG | - | chr6.1:10978488-10978507 | None:intergenic | 30.0% | |
| AATCTCTGTTATAATATGGC+AGG | + | chr6.1:10975473-10975492 | MS.gene87967:intron | 30.0% | |
| ACAGTTTGGCTGTAATTTAT+GGG | + | chr6.1:10975327-10975346 | MS.gene87967:intron | 30.0% | |
| ACATATTATGGGAATTTAGG+CGG | + | chr6.1:10975751-10975770 | MS.gene87967:intron | 30.0% | |
| ACCAATAGCCTATCAATATA+TGG | - | chr6.1:10977322-10977341 | None:intergenic | 30.0% | |
| ACCTCTCTTTCATTATACAT+TGG | - | chr6.1:10977600-10977619 | None:intergenic | 30.0% | |
| AGCATGTATACCTTAATTGT+TGG | - | chr6.1:10977812-10977831 | None:intergenic | 30.0% | |
| AGCTGTAAGTTTAAATGTCT+CGG | + | chr6.1:10974966-10974985 | MS.gene87967:intron | 30.0% | |
| AGTGAACAAACAAAAAATGC+AGG | + | chr6.1:10978067-10978086 | MS.gene87967:intron | 30.0% | |
| ATAGAGAATAATCGAGTAAC+AGG | + | chr6.1:10977991-10978010 | MS.gene87967:intron | 30.0% | |
| ATATTCGATTACAATGGCAA+AGG | - | chr6.1:10978376-10978395 | None:intergenic | 30.0% | |
| ATCTCTGTTATAATATGGCA+GGG | + | chr6.1:10975474-10975493 | MS.gene87967:intron | 30.0% | |
| ATGGAACCAAAGAAAAACTT+AGG | - | chr6.1:10977900-10977919 | None:intergenic | 30.0% | |
| ATTAACGTTGTCAATTTGAC+TGG | + | chr6.1:10977408-10977427 | MS.gene87967:intron | 30.0% | |
| ATTAAGGATGATGTTGAGTT+GGG | + | chr6.1:10977540-10977559 | MS.gene87967:CDS | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+GGG | + | chr6.1:10976789-10976808 | MS.gene87967:CDS | 30.0% | |
| ATTATTAACAAGGAAAGGGA+TGG | - | chr6.1:10978285-10978304 | None:intergenic | 30.0% | |
| CAAAACATGGAAATTATTCC+AGG | + | chr6.1:10977483-10977502 | MS.gene87967:intron | 30.0% | |
| CAACAACAATAACCAATATC+AGG | - | chr6.1:10978308-10978327 | None:intergenic | 30.0% | |
| CAGGATTATTAACAAGGAAA+GGG | - | chr6.1:10978289-10978308 | None:intergenic | 30.0% | |
| CAGGTTTATCAGTTATCAAT+TGG | + | chr6.1:10977719-10977738 | MS.gene87967:intron | 30.0% | |
| GAAATGATAATCGCAAAACA+TGG | + | chr6.1:10977470-10977489 | MS.gene87967:intron | 30.0% | |
| GATAAATTGGGAGACTATTA+AGG | + | chr6.1:10977524-10977543 | MS.gene87967:intron | 30.0% | |
| TAAGGGATATGTCTTTCAAA+TGG | + | chr6.1:10976806-10976825 | MS.gene87967:CDS | 30.0% | |
| TACAGTTTGGCTGTAATTTA+TGG | + | chr6.1:10975326-10975345 | MS.gene87967:intron | 30.0% | |
| TATGGAATAGAATGTCTACA+TGG | - | chr6.1:10977304-10977323 | None:intergenic | 30.0% | |
| TATTAACAAATTATTGCCGG+CGG | - | chr6.1:10976412-10976431 | None:intergenic | 30.0% | |
| TATTAAGGATGATGTTGAGT+TGG | + | chr6.1:10977539-10977558 | MS.gene87967:CDS | 30.0% | |
| TATTAGTTGCTGTGTTAGTA+AGG | + | chr6.1:10976788-10976807 | MS.gene87967:CDS | 30.0% | |
| TATTCGATTACAATGGCAAA+GGG | - | chr6.1:10978375-10978394 | None:intergenic | 30.0% | |
| TCAGGATTATTAACAAGGAA+AGG | - | chr6.1:10978290-10978309 | None:intergenic | 30.0% | |
| TCAGGTAAAGAGATTGATAA+TGG | + | chr6.1:10976653-10976672 | MS.gene87967:intron | 30.0% | |
| TCCAATGTATAATGAAAGAG+AGG | + | chr6.1:10977596-10977615 | MS.gene87967:CDS | 30.0% | |
| TCCATATATTGATAGGCTAT+TGG | + | chr6.1:10977318-10977337 | MS.gene87967:intron | 30.0% | |
| TCTACATCTAAAAGTCCTTT+AGG | + | chr6.1:10978884-10978903 | MS.gene87967:CDS | 30.0% | |
| TCTTTCCGCAACTAATATAT+TGG | + | chr6.1:10978487-10978506 | MS.gene87967:intron | 30.0% | |
| TGCATTTGATGTCTAATTAC+AGG | + | chr6.1:10978643-10978662 | MS.gene87967:intron | 30.0% | |
| TGTATGTACTTTGTACATTG+AGG | + | chr6.1:10977233-10977252 | MS.gene87967:intron | 30.0% | |
| TTCAACTGATCCAACAATTA+AGG | + | chr6.1:10977799-10977818 | MS.gene87967:CDS | 30.0% | |
| ! | CAGAACATTTAAAATGCCTA+AGG | + | chr6.1:10978784-10978803 | MS.gene87967:CDS | 30.0% |
| ! | GACTCCATTATACTTTTACT+TGG | - | chr6.1:10976033-10976052 | None:intergenic | 30.0% |
| ! | GTCACCTTAAATTACACTTT+TGG | + | chr6.1:10977853-10977872 | MS.gene87967:intron | 30.0% |
| ! | TCAGAAGTTTGAAACTACAA+AGG | - | chr6.1:10975864-10975883 | None:intergenic | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | + | chr6.1:10976602-10976621 | MS.gene87967:CDS | 30.0% |
| !! | CACTATATAGTAGCCATTTT+AGG | - | chr6.1:10976155-10976174 | None:intergenic | 30.0% |
| !! | GTTTTTCTTTGGTTCCATTT+TGG | + | chr6.1:10977902-10977921 | MS.gene87967:intron | 30.0% |
| !!! | TCAGCATGTGTTTTTTGTAA+AGG | + | chr6.1:10977259-10977278 | MS.gene87967:intron | 30.0% |
| !!! | TGTGTTTTTTAATCAGGAAG+TGG | + | chr6.1:10975082-10975101 | MS.gene87967:CDS | 30.0% |
| !!! | TGTTGTCGTTTTACGTTTTT+CGG | + | chr6.1:10975424-10975443 | MS.gene87967:intron | 30.0% |
| AAACCAATCAAGTGATCAAC+AGG | - | chr6.1:10976710-10976729 | None:intergenic | 35.0% | |
| AAAGAAACATCAAGCGTACT+TGG | - | chr6.1:10976217-10976236 | None:intergenic | 35.0% | |
| AACCAATCAAGTGATCAACA+GGG | - | chr6.1:10976709-10976728 | None:intergenic | 35.0% | |
| AAGGTGATTGTGAATGATTG+TGG | + | chr6.1:10978042-10978061 | MS.gene87967:intron | 35.0% | |
| AATATGTGTGCATGCTTGTT+TGG | + | chr6.1:10976188-10976207 | MS.gene87967:intron | 35.0% | |
| ACATCTAAAAGTCCTTTAGG+AGG | + | chr6.1:10978887-10978906 | MS.gene87967:CDS | 35.0% | |
| AGGGTTAACAACAATAACAG+AGG | - | chr6.1:10978356-10978375 | None:intergenic | 35.0% | |
| ATATGTGTGCATGCTTGTTT+GGG | + | chr6.1:10976189-10976208 | MS.gene87967:intron | 35.0% | |
| ATCACGTTTACTCTCTATAG+TGG | - | chr6.1:10975936-10975955 | None:intergenic | 35.0% | |
| ATGAAGTTGACATAACAACC+AGG | - | chr6.1:10976915-10976934 | None:intergenic | 35.0% | |
| CAAACAAAAAATGCAGGAGT+TGG | + | chr6.1:10978073-10978092 | MS.gene87967:intron | 35.0% | |
| CAGTTTGGCTGTAATTTATG+GGG | + | chr6.1:10975328-10975347 | MS.gene87967:intron | 35.0% | |
| CATGGAAATTATTCCAGGAT+TGG | + | chr6.1:10977488-10977507 | MS.gene87967:intron | 35.0% | |
| CGTTCTTATTCTGTGCAAAT+GGG | + | chr6.1:10975595-10975614 | MS.gene87967:intron | 35.0% | |
| GAACTTGAACAAGAACCATA+GGG | - | chr6.1:10977578-10977597 | None:intergenic | 35.0% | |
| GAAGTTAGGGACAATAGAAA+TGG | + | chr6.1:10978146-10978165 | MS.gene87967:intron | 35.0% | |
| GAGTAACAGGACTAATGATA+GGG | + | chr6.1:10978004-10978023 | MS.gene87967:intron | 35.0% | |
| GGATTAGGGAATATATGCAT+TGG | - | chr6.1:10977162-10977181 | None:intergenic | 35.0% | |
| GTCTAACAAGAGAACCAAAA+TGG | - | chr6.1:10977919-10977938 | None:intergenic | 35.0% | |
| TAACTAGAAATTAACTCGGG+CGG | - | chr6.1:10975541-10975560 | None:intergenic | 35.0% | |
| TAATCATCAAATGCCAATCC+TGG | - | chr6.1:10977504-10977523 | None:intergenic | 35.0% | |
| TACAAGTAGAATGCCATAGA+TGG | + | chr6.1:10978096-10978115 | MS.gene87967:intron | 35.0% | |
| TACAATACCTGATCTGTTTC+TGG | - | chr6.1:10978553-10978572 | None:intergenic | 35.0% | |
| TCTCTGTTATAATATGGCAG+GGG | + | chr6.1:10975475-10975494 | MS.gene87967:intron | 35.0% | |
| TGAGCATGAACTAACAAAGT+AGG | + | chr6.1:10975785-10975804 | MS.gene87967:intron | 35.0% | |
| TGTCTACATGGATAAGTACA+TGG | - | chr6.1:10977292-10977311 | None:intergenic | 35.0% | |
| TTAACCCATTGTTATGTTGC+AGG | + | chr6.1:10978455-10978474 | MS.gene87967:intron | 35.0% | |
| TTCAGAAAACAGTTGGAAAC+TGG | + | chr6.1:10976487-10976506 | MS.gene87967:intron | 35.0% | |
| TTTGATTCCAGAAACAGATC+AGG | + | chr6.1:10978543-10978562 | MS.gene87967:intron | 35.0% | |
| ! | AAAAGGGAAGAGTTAAGTTG+TGG | - | chr6.1:10976463-10976482 | None:intergenic | 35.0% |
| ! | AACCTGAACCTGATTTTCTT+TGG | + | chr6.1:10978255-10978274 | MS.gene87967:intron | 35.0% |
| ! | CACATCCTTTTTAATGCCAT+AGG | + | chr6.1:10977080-10977099 | MS.gene87967:intron | 35.0% |
| ! | TGAGCTAATTTGTAATGCAG+TGG | + | chr6.1:10978416-10978435 | MS.gene87967:intron | 35.0% |
| ! | TTCATTTTCAGCTGCACAAT+TGG | + | chr6.1:10974924-10974943 | MS.gene87967:CDS | 35.0% |
| !! | AAAAGCATCAACTGGATGTA+TGG | - | chr6.1:10978519-10978538 | None:intergenic | 35.0% |
| !! | TGATCTGTTTCTGGAATCAA+AGG | - | chr6.1:10978544-10978563 | None:intergenic | 35.0% |
| !! | TTTATTTTCCGGGGTAAGTT+TGG | + | chr6.1:10975043-10975062 | MS.gene87967:intron | 35.0% |
| !!! | ACTGTTTTTACTTTGGCTGA+TGG | + | chr6.1:10975110-10975129 | MS.gene87967:CDS | 35.0% |
| !!! | GGTTGCAACTGTTTTTACTT+TGG | + | chr6.1:10975103-10975122 | MS.gene87967:CDS | 35.0% |
| AAGCTTACCAATGTAACCGA+GGG | - | chr6.1:10975405-10975424 | None:intergenic | 40.0% | |
| ACAAGCCTGCAACATAACAA+TGG | - | chr6.1:10978463-10978482 | None:intergenic | 40.0% | |
| ACCTTTAACATAACGAGTCC+CGG | - | chr6.1:10976527-10976546 | None:intergenic | 40.0% | |
| ACTCGTTATGTTAAAGGTGG+TGG | + | chr6.1:10976529-10976548 | MS.gene87967:CDS | 40.0% | |
| AGCAACAACACCTCTTCAAT+AGG | - | chr6.1:10976864-10976883 | None:intergenic | 40.0% | |
| AGTGCACCTAGTAAAACTCA+GGG | - | chr6.1:10975216-10975235 | None:intergenic | 40.0% | |
| ATAGTTCGAGCATCCAGAAA+AGG | + | chr6.1:10976834-10976853 | MS.gene87967:CDS | 40.0% | |
| ATGGTTCGCCAAAGAAAATC+AGG | - | chr6.1:10978266-10978285 | None:intergenic | 40.0% | |
| CAAGCCTGCAACATAACAAT+GGG | - | chr6.1:10978462-10978481 | None:intergenic | 40.0% | |
| CACCTTCTTTCTCAAAGCTA+CGG | + | chr6.1:10974871-10974890 | MS.gene87967:CDS | 40.0% | |
| CATTTCTATAATCCAGCAGC+AGG | - | chr6.1:10977134-10977153 | None:intergenic | 40.0% | |
| CGAGTAACAGGACTAATGAT+AGG | + | chr6.1:10978003-10978022 | MS.gene87967:intron | 40.0% | |
| GCAACAACACCTCTTCAATA+GGG | - | chr6.1:10976863-10976882 | None:intergenic | 40.0% | |
| GCGTTCTTATTCTGTGCAAA+TGG | + | chr6.1:10975594-10975613 | MS.gene87967:intron | 40.0% | |
| GGAACTTGAACAAGAACCAT+AGG | - | chr6.1:10977579-10977598 | None:intergenic | 40.0% | |
| GGGAAACTCTAATTACCCTA+TGG | + | chr6.1:10977560-10977579 | MS.gene87967:CDS | 40.0% | |
| GTTTCTCAGTTCTGTGCAAT+TGG | + | chr6.1:10976369-10976388 | MS.gene87967:intron | 40.0% | |
| TAGTGCACCTAGTAAAACTC+AGG | - | chr6.1:10975217-10975236 | None:intergenic | 40.0% | |
| TAGTTCGAGCATCCAGAAAA+GGG | + | chr6.1:10976835-10976854 | MS.gene87967:CDS | 40.0% | |
| TATGCGCAAACTAACAAGCA+GGG | + | chr6.1:10976570-10976589 | MS.gene87967:CDS | 40.0% | |
| TCTCATGCTCTCACCTAAAA+TGG | + | chr6.1:10976139-10976158 | MS.gene87967:intron | 40.0% | |
| TGCCTAAGGAGAGAAAAGAT+AGG | + | chr6.1:10978798-10978817 | MS.gene87967:CDS | 40.0% | |
| TTACAAAGCAGGTGCACTAA+AGG | + | chr6.1:10978169-10978188 | MS.gene87967:intron | 40.0% | |
| TTAGTCCAGAACTGCTTCAT+TGG | - | chr6.1:10975186-10975205 | None:intergenic | 40.0% | |
| TTATGCGCAAACTAACAAGC+AGG | + | chr6.1:10976569-10976588 | MS.gene87967:CDS | 40.0% | |
| ! | CTTACAGCTTTTGCAATGAC+TGG | - | chr6.1:10974955-10974974 | None:intergenic | 40.0% |
| ! | GACCTATCTTTTCTCTCCTT+AGG | - | chr6.1:10978803-10978822 | None:intergenic | 40.0% |
| ! | GTTTTTACTTTGGCTGATGG+AGG | + | chr6.1:10975113-10975132 | MS.gene87967:CDS | 40.0% |
| ! | TATAATATGGCAGGGGCTTT+TGG | + | chr6.1:10975482-10975501 | MS.gene87967:intron | 40.0% |
| ! | TATCGTCCCTGAGTTTTACT+AGG | + | chr6.1:10975207-10975226 | MS.gene87967:intron | 40.0% |
| !! | AAAAGGGTACCCTATTGAAG+AGG | + | chr6.1:10976851-10976870 | MS.gene87967:CDS | 40.0% |
| !! | ACTGGTGCTGATATAGTTAC+CGG | + | chr6.1:10976505-10976524 | MS.gene87967:CDS | 40.0% |
| !! | ATAGGCTATTGGTCTTCTGT+AGG | + | chr6.1:10977329-10977348 | MS.gene87967:intron | 40.0% |
| !! | CAAAGGACAAAAGCATCAAC+TGG | - | chr6.1:10978527-10978546 | None:intergenic | 40.0% |
| !! | GTAGCTTTGAGAAAGAAGGT+GGG | - | chr6.1:10974872-10974891 | None:intergenic | 40.0% |
| !! | TTATCAATTGGTGCTGCATG+TGG | + | chr6.1:10977731-10977750 | MS.gene87967:CDS | 40.0% |
| !! | TTCAATAGGGTACCCTTTTC+TGG | - | chr6.1:10976850-10976869 | None:intergenic | 40.0% |
| AAAGCAGGTGCACTAAAGGA+GGG | + | chr6.1:10978173-10978192 | MS.gene87967:intron | 45.0% | |
| ACCGGGACTCGTTATGTTAA+AGG | + | chr6.1:10976523-10976542 | MS.gene87967:CDS | 45.0% | |
| ATGCGCAAACTAACAAGCAG+GGG | + | chr6.1:10976571-10976590 | MS.gene87967:CDS | 45.0% | |
| CAAGCTTACCAATGTAACCG+AGG | - | chr6.1:10975406-10975425 | None:intergenic | 45.0% | |
| CACCTTTGCTTCTCCATCTA+TGG | - | chr6.1:10978112-10978131 | None:intergenic | 45.0% | |
| CAGATTTGACAGGGTCTTTC+AGG | + | chr6.1:10976635-10976654 | MS.gene87967:CDS | 45.0% | |
| CATTCAGATGGCACTAGGTT+AGG | + | chr6.1:10978917-10978936 | MS.gene87967:CDS | 45.0% | |
| CGCCAAAGAAAATCAGGTTC+AGG | - | chr6.1:10978260-10978279 | None:intergenic | 45.0% | |
| CTCCCTGTTGATCACTTGAT+TGG | + | chr6.1:10976704-10976723 | MS.gene87967:intron | 45.0% | |
| CTGGTGTCTCAGATTTGACA+GGG | + | chr6.1:10976626-10976645 | MS.gene87967:CDS | 45.0% | |
| GAATGTGACATGCCTCCTAA+AGG | - | chr6.1:10978902-10978921 | None:intergenic | 45.0% | |
| GCATATATTCCCTAATCCCG+TGG | + | chr6.1:10977164-10977183 | MS.gene87967:intron | 45.0% | |
| GGGACTCGTTATGTTAAAGG+TGG | + | chr6.1:10976526-10976545 | MS.gene87967:CDS | 45.0% | |
| GGTAACACACTAAGCGTACA+GGG | - | chr6.1:10975377-10975396 | None:intergenic | 45.0% | |
| GTCATAGTCAACTGAAGCCA+CGG | - | chr6.1:10977184-10977203 | None:intergenic | 45.0% | |
| TCATAGTCAACTGAAGCCAC+GGG | - | chr6.1:10977183-10977202 | None:intergenic | 45.0% | |
| TGCCATAGATGGAGAAGCAA+AGG | + | chr6.1:10978107-10978126 | MS.gene87967:intron | 45.0% | |
| TGTCACATTCAGATGGCACT+AGG | + | chr6.1:10978912-10978931 | MS.gene87967:CDS | 45.0% | |
| TTGGCTGTAATTTATGGGGC+AGG | + | chr6.1:10975332-10975351 | MS.gene87967:intron | 45.0% | |
| ! | ACTTTGGCTGATGGAGGTAT+CGG | + | chr6.1:10975119-10975138 | MS.gene87967:CDS | 45.0% |
| ! | GCACAAACACTTTTATGGCC+TGG | + | chr6.1:10976607-10976626 | MS.gene87967:CDS | 45.0% |
| ! | TCTATTTTCAGCCGGACAAC+AGG | + | chr6.1:10975160-10975179 | MS.gene87967:CDS | 45.0% |
| ! | TGCAAATGGGTTTCGCTGTA+GGG | + | chr6.1:10975608-10975627 | MS.gene87967:intron | 45.0% |
| !! | CGTAGCTTTGAGAAAGAAGG+TGG | - | chr6.1:10974873-10974892 | None:intergenic | 45.0% |
| !! | CTGGTGCTGATATAGTTACC+GGG | + | chr6.1:10976506-10976525 | MS.gene87967:CDS | 45.0% |
| !! | GACCGTAGCTTTGAGAAAGA+AGG | - | chr6.1:10974876-10974895 | None:intergenic | 45.0% |
| !!! | GGAGGCATTCTATTTTCAGC+CGG | + | chr6.1:10975152-10975171 | MS.gene87967:CDS | 45.0% |
| ACAGGCCAATGAAGCAGTTC+TGG | + | chr6.1:10975178-10975197 | MS.gene87967:CDS | 50.0% | |
| ACTTTACAGATGCCTGCTGC+TGG | + | chr6.1:10977119-10977138 | MS.gene87967:intron | 50.0% | |
| AGTGTGTTACCGCTAACCCT+CGG | + | chr6.1:10975386-10975405 | MS.gene87967:CDS | 50.0% | |
| CAAAGCAGGTGCACTAAAGG+AGG | + | chr6.1:10978172-10978191 | MS.gene87967:intron | 50.0% | |
| CAACTGAAGCCACGGGATTA+GGG | - | chr6.1:10977176-10977195 | None:intergenic | 50.0% | |
| CACTAAGCGTACAGGGAGAA+AGG | - | chr6.1:10975370-10975389 | None:intergenic | 50.0% | |
| CCAATGTAACCGAGGGTTAG+CGG | - | chr6.1:10975398-10975417 | None:intergenic | 50.0% | |
| CCTGGTGTCTCAGATTTGAC+AGG | + | chr6.1:10976625-10976644 | MS.gene87967:CDS | 50.0% | |
| CGGTAACACACTAAGCGTAC+AGG | - | chr6.1:10975378-10975397 | None:intergenic | 50.0% | |
| TAGGTTCGCATGTGAGTGTG+TGG | + | chr6.1:10978936-10978955 | MS.gene87967:CDS | 50.0% | |
| TCAACTGAAGCCACGGGATT+AGG | - | chr6.1:10977177-10977196 | None:intergenic | 50.0% | |
| TCCTGAGACCAAACTTACCC+CGG | - | chr6.1:10975054-10975073 | None:intergenic | 50.0% | |
| ! | CCTGTCAAATCTGAGACACC+AGG | - | chr6.1:10976628-10976647 | None:intergenic | 50.0% |
| ! | CTCTGGAAAAAGCAGAGCAC+AGG | + | chr6.1:10975505-10975524 | MS.gene87967:CDS | 50.0% |
| ! | GGAGGCATGTCACATTCAGA+TGG | + | chr6.1:10978905-10978924 | MS.gene87967:CDS | 50.0% |
| ! | GGGAAGAGTTAAGTTGTGGC+AGG | - | chr6.1:10976459-10976478 | None:intergenic | 50.0% |
| ! | GTGCAAATGGGTTTCGCTGT+AGG | + | chr6.1:10975607-10975626 | MS.gene87967:intron | 50.0% |
| ! | GTTAAAGGTGGTGGTGTGCA+TGG | + | chr6.1:10976538-10976557 | MS.gene87967:CDS | 50.0% |
| ! | TGCTTCATTGGCCTGTTGTC+CGG | - | chr6.1:10975174-10975193 | None:intergenic | 50.0% |
| AAGCGTACAGGGAGAAAGGC+TGG | - | chr6.1:10975366-10975385 | None:intergenic | 55.0% | |
| ATGGGTTTCGCTGTAGGGCT+AGG | + | chr6.1:10975613-10975632 | MS.gene87967:intron | 55.0% | |
| CCGCTAACCCTCGGTTACAT+TGG | + | chr6.1:10975395-10975414 | MS.gene87967:CDS | 55.0% | |
| TCCGGGGTAAGTTTGGTCTC+AGG | + | chr6.1:10975050-10975069 | MS.gene87967:intron | 55.0% | |
| TGGGTTTCGCTGTAGGGCTA+GGG | + | chr6.1:10975614-10975633 | MS.gene87967:intron | 55.0% | |
| TTTCCGTCATGTTACGCCGC+CGG | + | chr6.1:10976393-10976412 | MS.gene87967:intron | 55.0% | |
| ! | AAGGTGGTGGTGTGCATGGA+TGG | + | chr6.1:10976542-10976561 | MS.gene87967:CDS | 55.0% |
| !! | CTGATGGAGGTATCGGTGAC+TGG | + | chr6.1:10975126-10975145 | MS.gene87967:CDS | 55.0% |
| !! | GGAGGTATCGGTGACTGGTT+TGG | + | chr6.1:10975131-10975150 | MS.gene87967:CDS | 55.0% |
| !! | GGTATCGGTGACTGGTTTGG+AGG | + | chr6.1:10975134-10975153 | MS.gene87967:CDS | 55.0% |
| GGGTTTCGCTGTAGGGCTAG+GGG | + | chr6.1:10975615-10975634 | MS.gene87967:intron | 60.0% | |
| GTGCTGCATGTGGACTCAGC+TGG | + | chr6.1:10977741-10977760 | MS.gene87967:CDS | 60.0% | |
| TTGCCGGCGGCGTAACATGA+CGG | - | chr6.1:10976399-10976418 | None:intergenic | 60.0% | |
| !!! | ATGGCAGGGGCTTTTGGCTC+TGG | + | chr6.1:10975488-10975507 | MS.gene87967:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 10974865 | 10978976 | 10974865 | ID=MS.gene87967 |
| chr6.1 | mRNA | 10974865 | 10978976 | 10974865 | ID=MS.gene87967.t1;Parent=MS.gene87967 |
| chr6.1 | exon | 10974865 | 10974969 | 10974865 | ID=MS.gene87967.t1.exon1;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10974865 | 10974969 | 10974865 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10975072 | 10975210 | 10975072 | ID=MS.gene87967.t1.exon2;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10975072 | 10975210 | 10975072 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10975354 | 10975416 | 10975354 | ID=MS.gene87967.t1.exon3;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10975354 | 10975416 | 10975354 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10975495 | 10975526 | 10975495 | ID=MS.gene87967.t1.exon4;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10975495 | 10975526 | 10975495 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10976499 | 10976656 | 10976499 | ID=MS.gene87967.t1.exon5;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10976499 | 10976656 | 10976499 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10976758 | 10976872 | 10976758 | ID=MS.gene87967.t1.exon6;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10976758 | 10976872 | 10976758 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10977525 | 10977617 | 10977525 | ID=MS.gene87967.t1.exon7;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10977525 | 10977617 | 10977525 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10977722 | 10977820 | 10977722 | ID=MS.gene87967.t1.exon8;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10977722 | 10977820 | 10977722 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| chr6.1 | exon | 10978761 | 10978976 | 10978761 | ID=MS.gene87967.t1.exon9;Parent=MS.gene87967.t1 |
| chr6.1 | CDS | 10978761 | 10978976 | 10978761 | ID=cds.MS.gene87967.t1;Parent=MS.gene87967.t1 |
| Gene Sequence |
| Protein sequence |
