Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88437.t1 | AET02443.1 | 100 | 188 | 0 | 0 | 1 | 188 | 30 | 217 | 2.10E-103 | 385.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88437.t1 | Q9VKV8 | 81.4 | 188 | 35 | 0 | 1 | 188 | 1 | 188 | 1.2e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88437.t1 | B7FL68 | 100.0 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 1.5e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene88437 | -0.843274 | 1.55E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene88437 | -0.812561 | 3.98E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene88437 | -0.812291 | 4.57E-51 | -1.69E-46 |
| MS.gene050273 | MS.gene88437 | -0.824425 | 8.13E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene88437 | -0.802537 | 5.35E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene88437 | -0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene88437 | -0.816245 | 6.11E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene88437 | -0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene88437 | -0.840957 | 6.36E-58 | -1.69E-46 |
| MS.gene051279 | MS.gene88437 | -0.820372 | 7.10E-53 | -1.69E-46 |
| MS.gene051574 | MS.gene88437 | -0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene88437 | -0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene88437 | -0.823929 | 1.06E-53 | -1.69E-46 |
| MS.gene052056 | MS.gene88437 | 0.830555 | 2.75E-55 | -1.69E-46 |
| MS.gene052239 | MS.gene88437 | 0.829539 | 4.87E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene88437 | -0.818307 | 2.10E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene88437 | -0.819826 | 9.47E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene88437 | -0.841236 | 5.37E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene88437 | -0.844459 | 7.46E-59 | -1.69E-46 |
| MS.gene052586 | MS.gene88437 | -0.845415 | 4.12E-59 | -1.69E-46 |
| MS.gene052673 | MS.gene88437 | 0.831085 | 2.04E-55 | -1.69E-46 |
| MS.gene052867 | MS.gene88437 | -0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene052965 | MS.gene88437 | 0.805423 | 1.34E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene88437 | -0.818779 | 1.64E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene88437 | -0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene88437 | -0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene88437 | -0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene88437 | -0.819786 | 9.67E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene88437 | -0.810152 | 1.33E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene88437 | 0.859865 | 3.08E-63 | -1.69E-46 |
| MS.gene054576 | MS.gene88437 | -0.821481 | 3.95E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene88437 | -0.823854 | 1.11E-53 | -1.69E-46 |
| MS.gene055166 | MS.gene88437 | -0.808362 | 3.21E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene88437 | -0.805294 | 1.43E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene88437 | -0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene88437 | -0.815763 | 7.82E-52 | -1.69E-46 |
| MS.gene056779 | MS.gene88437 | -0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene88437 | -0.81266 | 3.79E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene88437 | -0.807461 | 5.00E-50 | -1.69E-46 |
| MS.gene058223 | MS.gene88437 | 0.807393 | 5.17E-50 | -1.69E-46 |
| MS.gene058294 | MS.gene88437 | -0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene88437 | -0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene88437 | -0.815355 | 9.64E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene88437 | -0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene88437 | 0.836724 | 7.91E-57 | -1.69E-46 |
| MS.gene060373 | MS.gene88437 | -0.818758 | 1.66E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene88437 | 0.85551 | 6.01E-62 | -1.69E-46 |
| MS.gene060879 | MS.gene88437 | -0.812087 | 5.06E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene88437 | -0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene88437 | 0.810862 | 9.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88437.t1 | MTR_8g040630 | 100.000 | 188 | 0 | 0 | 1 | 188 | 30 | 217 | 7.67e-142 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88437.t1 | AT3G12300 | 87.766 | 188 | 23 | 0 | 1 | 188 | 1 | 188 | 4.37e-129 | 362 |
Find 55 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTTGAGATTCAAGTTT+TGG | 0.209840 | 8.3:-57416582 | MS.gene88437:CDS |
| ATTAGTCCCATATGCTTTCT+TGG | 0.233780 | 8.3:+57416158 | None:intergenic |
| TCTAATGTACTGGAAATAAT+TGG | 0.268445 | 8.3:-57416713 | MS.gene88437:CDS |
| ATACCCAAGGCTGTATAATA+TGG | 0.289391 | 8.3:+57417206 | None:intergenic |
| TGGTATAAAACTTCCATTCT+TGG | 0.289803 | 8.3:-57416636 | MS.gene88437:CDS |
| CATCTTGTGGTCGCTTAATA+TGG | 0.311001 | 8.3:+57416747 | None:intergenic |
| GGAGCAAACCTTTGCAGATA+TGG | 0.317310 | 8.3:-57417082 | MS.gene88437:CDS |
| TAAAGTCAGCCAGGTTAAAC+TGG | 0.353864 | 8.3:+57416181 | None:intergenic |
| TTTCCATATTATACAGCCTT+GGG | 0.401172 | 8.3:-57417209 | MS.gene88437:intron |
| TGTGGAGACACTACGAGTTC+AGG | 0.427848 | 8.3:-57416133 | MS.gene88437:CDS |
| GACTTTACCAAGAAAGCATA+TGG | 0.429193 | 8.3:-57416165 | MS.gene88437:CDS |
| TTCACAATCATAACCAAGAA+TGG | 0.450408 | 8.3:+57416623 | None:intergenic |
| AGTGTGGCAGCTGGGTCAGC+CGG | 0.451970 | 8.3:+57416659 | None:intergenic |
| CTTTCCATATTATACAGCCT+TGG | 0.463889 | 8.3:-57417210 | MS.gene88437:CDS |
| AGAAATAATGAAAATGTCAT+TGG | 0.467147 | 8.3:-57415921 | MS.gene88437:CDS |
| TTTATACCAAGTGTGGCAGC+TGG | 0.471135 | 8.3:+57416650 | None:intergenic |
| CAAGTTGTACCTTCCAATGC+AGG | 0.471690 | 8.3:-57416034 | MS.gene88437:intron |
| TTCAAGAACACATTCCAGTC+TGG | 0.472331 | 8.3:-57417237 | MS.gene88437:CDS |
| TTGCACTATGCCACTGAGAA+TGG | 0.489210 | 8.3:-57416223 | MS.gene88437:CDS |
| AGACATACAATCTAATGTAC+TGG | 0.495892 | 8.3:-57416723 | MS.gene88437:CDS |
| GATTGTATGTCTTCATCTTG+TGG | 0.496368 | 8.3:+57416734 | None:intergenic |
| CTTTCTTGGTAAAGTCAGCC+AGG | 0.501342 | 8.3:+57416172 | None:intergenic |
| TGGAGGATGGAATTGATGCC+AGG | 0.511205 | 8.3:-57415901 | MS.gene88437:CDS |
| GCTGACCCAGCTGCCACACT+TGG | 0.511732 | 8.3:-57416656 | MS.gene88437:CDS |
| ATGAAAATGTCATTGGAGGA+TGG | 0.513519 | 8.3:-57415914 | MS.gene88437:CDS |
| GAGCAAACCTTTGCAGATAT+GGG | 0.519182 | 8.3:-57417081 | MS.gene88437:CDS |
| TTCTCAAGCGACAGTTTGCA+TGG | 0.520738 | 8.3:+57416109 | None:intergenic |
| GTGTGGCAGCTGGGTCAGCC+GGG | 0.525412 | 8.3:+57416660 | None:intergenic |
| CAGACATCTCATACCTGCAT+TGG | 0.527544 | 8.3:+57416021 | None:intergenic |
| GGAAGGTACAACTTGAACTC+TGG | 0.537228 | 8.3:+57416042 | None:intergenic |
| AATAATGAAAATGTCATTGG+AGG | 0.544133 | 8.3:-57415918 | MS.gene88437:CDS |
| CTTCTCTGATCGTCTCTACT+CGG | 0.546100 | 8.3:-57416079 | MS.gene88437:CDS |
| GTCCACATACATTACGTGCC+CGG | 0.551642 | 8.3:-57416678 | MS.gene88437:CDS |
| TATGCCACTGAGAATGGATG+AGG | 0.552706 | 8.3:-57416217 | MS.gene88437:CDS |
| CATAACATTCAACCATCTCC+TGG | 0.552872 | 8.3:+57415883 | None:intergenic |
| TCTTTGTCCCATATCTGCAA+AGG | 0.557834 | 8.3:+57417074 | None:intergenic |
| TGATCGTCTCTACTCGGAAG+AGG | 0.559398 | 8.3:-57416073 | MS.gene88437:CDS |
| AGCATATGGGACTAATTATG+TGG | 0.561284 | 8.3:-57416151 | MS.gene88437:CDS |
| AGCCGGGCACGTAATGTATG+TGG | 0.564997 | 8.3:+57416676 | None:intergenic |
| CATCTCATACCTGCATTGGA+AGG | 0.576069 | 8.3:+57416025 | None:intergenic |
| ATGCAAACTGTCGCTTGAGA+AGG | 0.579025 | 8.3:-57416107 | MS.gene88437:CDS |
| AGGTACAACTTGAACTCTGG+TGG | 0.579778 | 8.3:+57416045 | None:intergenic |
| GAATCAAATCCAGTTTAACC+TGG | 0.582198 | 8.3:-57416190 | MS.gene88437:CDS |
| AGTGGCATAGTGCAAATGTA+CGG | 0.583812 | 8.3:+57416231 | None:intergenic |
| CACTGAGAATGGATGAGGGT+TGG | 0.589041 | 8.3:-57416212 | MS.gene88437:CDS |
| TTGCAGATATGGGACAAAGA+AGG | 0.596515 | 8.3:-57417071 | MS.gene88437:intron |
| ATATGGAAAGAAATCCAGAC+TGG | 0.597297 | 8.3:+57417223 | None:intergenic |
| TCTGCATGATGAACAATACA+AGG | 0.597722 | 8.3:+57415941 | None:intergenic |
| ACTTTACCAAGAAAGCATAT+GGG | 0.601556 | 8.3:-57416164 | MS.gene88437:CDS |
| TGTTATGTGTAGTTGTGTGT+CGG | 0.606396 | 8.3:-57415867 | MS.gene88437:CDS |
| ATGGAATTGATGCCAGGAGA+TGG | 0.612954 | 8.3:-57415895 | MS.gene88437:CDS |
| TTATACCAAGTGTGGCAGCT+GGG | 0.613588 | 8.3:+57416651 | None:intergenic |
| GGTACAACTTGAACTCTGGT+GGG | 0.629720 | 8.3:+57416046 | None:intergenic |
| CAACCCTCATCCATTCTCAG+TGG | 0.706213 | 8.3:+57416213 | None:intergenic |
| ATGCCACTGAGAATGGATGA+GGG | 0.727443 | 8.3:-57416216 | MS.gene88437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTTTTTTATTATTGT+AGG | - | chr8.3:57415990-57416009 | MS.gene88437:intron | 10.0% |
| !!! | TTTTATTATTTTTATGTCAT+AGG | - | chr8.3:57416822-57416841 | MS.gene88437:intron | 10.0% |
| !! | TAATCAAAGTAAAATGATTT+CGG | + | chr8.3:57416128-57416147 | None:intergenic | 15.0% |
| !! | AAGTTCTCCATATAATTAAA+TGG | + | chr8.3:57416675-57416694 | None:intergenic | 20.0% |
| !! | AGAAATAATGAAAATGTCAT+TGG | - | chr8.3:57417172-57417191 | MS.gene88437:intron | 20.0% |
| !! | CTTTCTTCCATTTAATTATA+TGG | - | chr8.3:57416665-57416684 | MS.gene88437:CDS | 20.0% |
| ! | AAATTAAACATCTGCAAGAT+TGG | + | chr8.3:57416621-57416640 | None:intergenic | 25.0% |
| ! | AATAATGAAAATGTCATTGG+AGG | - | chr8.3:57417175-57417194 | MS.gene88437:intron | 25.0% |
| ! | TCTAATGTACTGGAAATAAT+TGG | - | chr8.3:57416380-57416399 | MS.gene88437:intron | 25.0% |
| !! | TAAACTTACGATTTTGTCTT+GGG | - | chr8.3:57416299-57416318 | MS.gene88437:intron | 25.0% |
| !! | TTAAACTTACGATTTTGTCT+TGG | - | chr8.3:57416298-57416317 | MS.gene88437:intron | 25.0% |
| !!! | TCATATGTTTGTTGTGATTA+AGG | - | chr8.3:57415944-57415963 | MS.gene88437:CDS | 25.0% |
| AGACATACAATCTAATGTAC+TGG | - | chr8.3:57416370-57416389 | MS.gene88437:intron | 30.0% | |
| TGGTATAAAACTTCCATTCT+TGG | - | chr8.3:57416457-57416476 | MS.gene88437:intron | 30.0% | |
| TTCACAATCATAACCAAGAA+TGG | + | chr8.3:57416473-57416492 | None:intergenic | 30.0% | |
| TTTCCATATTATACAGCCTT+GGG | - | chr8.3:57415884-57415903 | MS.gene88437:CDS | 30.0% | |
| ! | AAACTTACGATTTTGTCTTG+GGG | - | chr8.3:57416300-57416319 | MS.gene88437:intron | 30.0% |
| ! | ACTCTTTTTATAGTTGTGGA+TGG | - | chr8.3:57416323-57416342 | MS.gene88437:intron | 30.0% |
| ! | ACTTTACCAAGAAAGCATAT+GGG | - | chr8.3:57416929-57416948 | MS.gene88437:intron | 30.0% |
| !! | CACATTTGAGATTCAAGTTT+TGG | - | chr8.3:57416511-57416530 | MS.gene88437:intron | 30.0% |
| AATATGTTGAAGAGTGACTG+AGG | - | chr8.3:57416257-57416276 | MS.gene88437:intron | 35.0% | |
| AGCATATGGGACTAATTATG+TGG | - | chr8.3:57416942-57416961 | MS.gene88437:intron | 35.0% | |
| ATACCCAAGGCTGTATAATA+TGG | + | chr8.3:57415890-57415909 | None:intergenic | 35.0% | |
| ATATGGAAAGAAATCCAGAC+TGG | + | chr8.3:57415873-57415892 | None:intergenic | 35.0% | |
| ATATGTTGAAGAGTGACTGA+GGG | - | chr8.3:57416258-57416277 | MS.gene88437:intron | 35.0% | |
| ATGAAAATGTCATTGGAGGA+TGG | - | chr8.3:57417179-57417198 | MS.gene88437:intron | 35.0% | |
| ATTAGTCCCATATGCTTTCT+TGG | + | chr8.3:57416938-57416957 | None:intergenic | 35.0% | |
| CCTATAAGACACACAAACAT+GGG | + | chr8.3:57416594-57416613 | None:intergenic | 35.0% | |
| CTTTCCATATTATACAGCCT+TGG | - | chr8.3:57415883-57415902 | MS.gene88437:CDS | 35.0% | |
| GAATCAAATCCAGTTTAACC+TGG | - | chr8.3:57416903-57416922 | MS.gene88437:intron | 35.0% | |
| GATTGTATGTCTTCATCTTG+TGG | + | chr8.3:57416362-57416381 | None:intergenic | 35.0% | |
| TCCTATAAGACACACAAACA+TGG | + | chr8.3:57416595-57416614 | None:intergenic | 35.0% | |
| TCTGCATGATGAACAATACA+AGG | + | chr8.3:57417155-57417174 | None:intergenic | 35.0% | |
| TGTTATGTGTAGTTGTGTGT+CGG | - | chr8.3:57417226-57417245 | MS.gene88437:CDS | 35.0% | |
| TTGTTAGCAGTGACATTAGA+TGG | - | chr8.3:57416056-57416075 | MS.gene88437:CDS | 35.0% | |
| TTTCATCTCAATTGCATGTC+AGG | - | chr8.3:57417124-57417143 | MS.gene88437:intron | 35.0% | |
| ! | GACTTTACCAAGAAAGCATA+TGG | - | chr8.3:57416928-57416947 | MS.gene88437:intron | 35.0% |
| ! | GTTTAGTTGTGCTTCTGAAA+TGG | - | chr8.3:57416172-57416191 | MS.gene88437:CDS | 35.0% |
| !! | TGGAAGTTTTATACCAAGTG+TGG | + | chr8.3:57416453-57416472 | None:intergenic | 35.0% |
| AATGGACAGCACAACACATA+AGG | + | chr8.3:57416209-57416228 | None:intergenic | 40.0% | |
| AGTGGCATAGTGCAAATGTA+CGG | + | chr8.3:57416865-57416884 | None:intergenic | 40.0% | |
| CACATCAGCCTTTCATAACA+TGG | + | chr8.3:57416235-57416254 | None:intergenic | 40.0% | |
| CATAACATTCAACCATCTCC+TGG | + | chr8.3:57417213-57417232 | None:intergenic | 40.0% | |
| CATCTTGTGGTCGCTTAATA+TGG | + | chr8.3:57416349-57416368 | None:intergenic | 40.0% | |
| CCATTTGGCCATGTTATGAA+AGG | - | chr8.3:57416224-57416243 | MS.gene88437:CDS | 40.0% | |
| CCCATGTTTGTGTGTCTTAT+AGG | - | chr8.3:57416591-57416610 | MS.gene88437:CDS | 40.0% | |
| CCTTTCATAACATGGCCAAA+TGG | + | chr8.3:57416227-57416246 | None:intergenic | 40.0% | |
| GAGCAAACCTTTGCAGATAT+GGG | - | chr8.3:57416012-57416031 | MS.gene88437:intron | 40.0% | |
| TAAAGTCAGCCAGGTTAAAC+TGG | + | chr8.3:57416915-57416934 | None:intergenic | 40.0% | |
| TATGTGTTGTGCTGTCCATT+TGG | - | chr8.3:57416209-57416228 | MS.gene88437:CDS | 40.0% | |
| TCTTTGTCCCATATCTGCAA+AGG | + | chr8.3:57416022-57416041 | None:intergenic | 40.0% | |
| TTCAAGAACACATTCCAGTC+TGG | - | chr8.3:57415856-57415875 | MS.gene88437:CDS | 40.0% | |
| TTGCAGATATGGGACAAAGA+AGG | - | chr8.3:57416022-57416041 | MS.gene88437:intron | 40.0% | |
| ! | GGGGACTCTTTTTATAGTTG+TGG | - | chr8.3:57416319-57416338 | MS.gene88437:intron | 40.0% |
| !! | GTTGTGCTTCTGAAATGGTT+AGG | - | chr8.3:57416177-57416196 | MS.gene88437:CDS | 40.0% |
| AGGTACAACTTGAACTCTGG+TGG | + | chr8.3:57417051-57417070 | None:intergenic | 45.0% | |
| ATACAGCCTTGGGTATGATG+TGG | - | chr8.3:57415894-57415913 | MS.gene88437:CDS | 45.0% | |
| ATGCCACTGAGAATGGATGA+GGG | - | chr8.3:57416877-57416896 | MS.gene88437:intron | 45.0% | |
| ATGGAATTGATGCCAGGAGA+TGG | - | chr8.3:57417198-57417217 | MS.gene88437:intron | 45.0% | |
| CAAGTTGTACCTTCCAATGC+AGG | - | chr8.3:57417059-57417078 | MS.gene88437:intron | 45.0% | |
| CAGACATCTCATACCTGCAT+TGG | + | chr8.3:57417075-57417094 | None:intergenic | 45.0% | |
| CATCTCATACCTGCATTGGA+AGG | + | chr8.3:57417071-57417090 | None:intergenic | 45.0% | |
| CTTCTCTGATCGTCTCTACT+CGG | - | chr8.3:57417014-57417033 | MS.gene88437:intron | 45.0% | |
| CTTTCTTGGTAAAGTCAGCC+AGG | + | chr8.3:57416924-57416943 | None:intergenic | 45.0% | |
| GGAGCAAACCTTTGCAGATA+TGG | - | chr8.3:57416011-57416030 | MS.gene88437:intron | 45.0% | |
| GGTACAACTTGAACTCTGGT+GGG | + | chr8.3:57417050-57417069 | None:intergenic | 45.0% | |
| TATGCCACTGAGAATGGATG+AGG | - | chr8.3:57416876-57416895 | MS.gene88437:intron | 45.0% | |
| TTATACCAAGTGTGGCAGCT+GGG | + | chr8.3:57416445-57416464 | None:intergenic | 45.0% | |
| TTCTCAAGCGACAGTTTGCA+TGG | + | chr8.3:57416987-57417006 | None:intergenic | 45.0% | |
| TTGCACTATGCCACTGAGAA+TGG | - | chr8.3:57416870-57416889 | MS.gene88437:intron | 45.0% | |
| TTTATACCAAGTGTGGCAGC+TGG | + | chr8.3:57416446-57416465 | None:intergenic | 45.0% | |
| ! | ACGTGCATCGACAGCAATTT+AGG | + | chr8.3:57416789-57416808 | None:intergenic | 45.0% |
| ! | ATGCAAACTGTCGCTTGAGA+AGG | - | chr8.3:57416986-57417005 | MS.gene88437:intron | 45.0% |
| ! | GGAAGGTACAACTTGAACTC+TGG | + | chr8.3:57417054-57417073 | None:intergenic | 45.0% |
| AGCCAACCACATCATACCCA+AGG | + | chr8.3:57415903-57415922 | None:intergenic | 50.0% | |
| AGCCTTGGGTATGATGTGGT+TGG | - | chr8.3:57415898-57415917 | MS.gene88437:CDS | 50.0% | |
| CAACCCTCATCCATTCTCAG+TGG | + | chr8.3:57416883-57416902 | None:intergenic | 50.0% | |
| CACTGAGAATGGATGAGGGT+TGG | - | chr8.3:57416881-57416900 | MS.gene88437:intron | 50.0% | |
| CATGGGCAGACTTACACACT+TGG | + | chr8.3:57416577-57416596 | None:intergenic | 50.0% | |
| GTCCACATACATTACGTGCC+CGG | - | chr8.3:57416415-57416434 | MS.gene88437:intron | 50.0% | |
| TGATCGTCTCTACTCGGAAG+AGG | - | chr8.3:57417020-57417039 | MS.gene88437:intron | 50.0% | |
| TGGAGGATGGAATTGATGCC+AGG | - | chr8.3:57417192-57417211 | MS.gene88437:intron | 50.0% | |
| TGTGGAGACACTACGAGTTC+AGG | - | chr8.3:57416960-57416979 | MS.gene88437:intron | 50.0% | |
| AGCCGGGCACGTAATGTATG+TGG | + | chr8.3:57416420-57416439 | None:intergenic | 55.0% | |
| AGTGTGGCAGCTGGGTCAGC+CGG | + | chr8.3:57416437-57416456 | None:intergenic | 65.0% | |
| GCTGACCCAGCTGCCACACT+TGG | - | chr8.3:57416437-57416456 | MS.gene88437:intron | 65.0% | |
| GTGTGGCAGCTGGGTCAGCC+GGG | + | chr8.3:57416436-57416455 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 57415853 | 57417262 | 57415853 | ID=MS.gene88437 |
| chr8.3 | mRNA | 57415853 | 57417262 | 57415853 | ID=MS.gene88437.t1;Parent=MS.gene88437 |
| chr8.3 | exon | 57417210 | 57417262 | 57417210 | ID=MS.gene88437.t1.exon1;Parent=MS.gene88437.t1 |
| chr8.3 | CDS | 57417210 | 57417262 | 57417210 | ID=cds.MS.gene88437.t1;Parent=MS.gene88437.t1 |
| chr8.3 | exon | 57417072 | 57417103 | 57417072 | ID=MS.gene88437.t1.exon2;Parent=MS.gene88437.t1 |
| chr8.3 | CDS | 57417072 | 57417103 | 57417072 | ID=cds.MS.gene88437.t1;Parent=MS.gene88437.t1 |
| chr8.3 | exon | 57416538 | 57416779 | 57416538 | ID=MS.gene88437.t1.exon3;Parent=MS.gene88437.t1 |
| chr8.3 | CDS | 57416538 | 57416779 | 57416538 | ID=cds.MS.gene88437.t1;Parent=MS.gene88437.t1 |
| chr8.3 | exon | 57416035 | 57416271 | 57416035 | ID=MS.gene88437.t1.exon4;Parent=MS.gene88437.t1 |
| chr8.3 | CDS | 57416035 | 57416271 | 57416035 | ID=cds.MS.gene88437.t1;Parent=MS.gene88437.t1 |
| chr8.3 | exon | 57415853 | 57415969 | 57415853 | ID=MS.gene88437.t1.exon5;Parent=MS.gene88437.t1 |
| chr8.3 | CDS | 57415853 | 57415969 | 57415853 | ID=cds.MS.gene88437.t1;Parent=MS.gene88437.t1 |
| Gene Sequence |
| Protein sequence |
