Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88883.t1 | RHN81639.1 | 98.6 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 5.10E-208 | 733.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88883.t1 | Q8L518 | 66.0 | 329 | 111 | 1 | 17 | 345 | 20 | 347 | 1.9e-131 | 470.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88883.t1 | A0A396JTL9 | 98.6 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 3.7e-208 | 733.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene88883 | 0.803265 | 3.78E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene88883 | 0.823843 | 1.11E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene88883 | 0.810363 | 1.20E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene88883 | -0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene049801 | MS.gene88883 | 0.811535 | 6.67E-51 | -1.69E-46 |
| MS.gene04991 | MS.gene88883 | -0.856029 | 4.24E-62 | -1.69E-46 |
| MS.gene050105 | MS.gene88883 | 0.856018 | 4.27E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene88883 | 0.830841 | 2.34E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene88883 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene88883 | 0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene88883 | 0.902757 | 6.99E-79 | -1.69E-46 |
| MS.gene051184 | MS.gene88883 | 0.804328 | 2.28E-49 | -1.69E-46 |
| MS.gene051275 | MS.gene88883 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene88883 | 0.803574 | 3.27E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene88883 | 0.854793 | 9.71E-62 | -1.69E-46 |
| MS.gene051655 | MS.gene88883 | 0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene05216 | MS.gene88883 | 0.841881 | 3.63E-58 | -1.69E-46 |
| MS.gene052464 | MS.gene88883 | 0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene88883 | 0.880392 | 5.70E-70 | -1.69E-46 |
| MS.gene052675 | MS.gene88883 | 0.874733 | 5.36E-68 | -1.69E-46 |
| MS.gene052677 | MS.gene88883 | 0.877995 | 4.02E-69 | -1.69E-46 |
| MS.gene053726 | MS.gene88883 | 0.812905 | 3.35E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene88883 | 0.851349 | 9.41E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene88883 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene055442 | MS.gene88883 | 0.808078 | 3.69E-50 | -1.69E-46 |
| MS.gene055505 | MS.gene88883 | 0.82833 | 9.55E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene88883 | 0.847018 | 1.51E-59 | -1.69E-46 |
| MS.gene056480 | MS.gene88883 | 0.836488 | 9.08E-57 | -1.69E-46 |
| MS.gene056779 | MS.gene88883 | 0.822138 | 2.78E-53 | -1.69E-46 |
| MS.gene056849 | MS.gene88883 | 0.853259 | 2.69E-61 | -1.69E-46 |
| MS.gene057155 | MS.gene88883 | 0.817655 | 2.95E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene88883 | 0.824695 | 7.02E-54 | -1.69E-46 |
| MS.gene058081 | MS.gene88883 | 0.830556 | 2.75E-55 | -1.69E-46 |
| MS.gene058223 | MS.gene88883 | -0.874635 | 5.79E-68 | -1.69E-46 |
| MS.gene058429 | MS.gene88883 | 0.867199 | 1.63E-65 | -1.69E-46 |
| MS.gene059952 | MS.gene88883 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene88883 | 0.916877 | 1.05E-85 | -1.69E-46 |
| MS.gene060851 | MS.gene88883 | 0.947531 | 5.62E-106 | -1.69E-46 |
| MS.gene060852 | MS.gene88883 | 0.945147 | 5.26E-104 | -1.69E-46 |
| MS.gene060932 | MS.gene88883 | 0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene06121 | MS.gene88883 | 0.872197 | 3.83E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88883.t1 | MTR_1g097850 | 94.505 | 364 | 6 | 1 | 1 | 364 | 1 | 350 | 0.0 | 714 |
| MS.gene88883.t1 | MTR_6g039820 | 78.363 | 342 | 74 | 0 | 1 | 342 | 1 | 342 | 0.0 | 583 |
| MS.gene88883.t1 | MTR_1g097850 | 93.156 | 263 | 4 | 1 | 1 | 263 | 1 | 249 | 0.0 | 508 |
| MS.gene88883.t1 | MTR_3g013430 | 66.181 | 343 | 115 | 1 | 2 | 344 | 113 | 454 | 3.03e-176 | 499 |
| MS.gene88883.t1 | MTR_8g041330 | 63.609 | 327 | 118 | 1 | 16 | 342 | 36 | 361 | 6.18e-162 | 459 |
| MS.gene88883.t1 | MTR_6g040230 | 77.021 | 235 | 52 | 1 | 108 | 342 | 263 | 495 | 3.98e-132 | 387 |
| MS.gene88883.t1 | MTR_2g054370 | 33.333 | 324 | 193 | 6 | 27 | 342 | 57 | 365 | 1.33e-49 | 171 |
| MS.gene88883.t1 | MTR_8g041220 | 63.441 | 93 | 33 | 1 | 238 | 330 | 40 | 131 | 1.38e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88883.t1 | AT1G74320 | 65.957 | 329 | 111 | 1 | 17 | 345 | 20 | 347 | 1.39e-169 | 477 |
| MS.gene88883.t1 | AT4G09760 | 63.557 | 343 | 122 | 3 | 1 | 342 | 1 | 341 | 1.85e-168 | 474 |
| MS.gene88883.t1 | AT4G09760 | 63.557 | 343 | 122 | 3 | 1 | 342 | 1 | 341 | 1.85e-168 | 474 |
| MS.gene88883.t1 | AT1G71697 | 63.006 | 346 | 126 | 2 | 1 | 344 | 1 | 346 | 1.40e-167 | 471 |
| MS.gene88883.t1 | AT4G09760 | 59.556 | 225 | 88 | 3 | 1 | 224 | 1 | 223 | 1.83e-95 | 285 |
| MS.gene88883.t1 | AT4G09760 | 58.571 | 210 | 84 | 3 | 1 | 209 | 1 | 208 | 1.06e-86 | 261 |
| MS.gene88883.t1 | AT2G26830 | 31.737 | 334 | 200 | 8 | 18 | 339 | 43 | 360 | 8.98e-52 | 176 |
Find 73 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATTCAATTGTCTTTA+TGG | 0.034762 | 1.1:+70409129 | None:intergenic |
| ACCATATATTCTGGGGCTTA+TGG | 0.170812 | 1.1:-70405868 | MS.gene88883:CDS |
| GTTAAGGAAGCCTACTTTAT+TGG | 0.174086 | 1.1:-70405675 | MS.gene88883:CDS |
| ACTGCGGTGGCTTCGGATTT+AGG | 0.180103 | 1.1:-70409067 | MS.gene88883:CDS |
| CTTTGGGGAGCACAAACTTT+TGG | 0.221935 | 1.1:+70406604 | None:intergenic |
| TCACTTCCATTAATTCTTCT+TGG | 0.258073 | 1.1:+70409092 | None:intergenic |
| TGCATCCCAAGAAGAATTAA+TGG | 0.261372 | 1.1:-70409098 | MS.gene88883:CDS |
| CCATATATTCTGGGGCTTAT+GGG | 0.262925 | 1.1:-70405867 | MS.gene88883:CDS |
| GGGCTTATGGGGACTTATTT+CGG | 0.306924 | 1.1:-70405855 | MS.gene88883:intron |
| TACCAGGCATATGAAGCTTA+TGG | 0.312386 | 1.1:+70406764 | None:intergenic |
| CCCATAAGCCCCAGAATATA+TGG | 0.317567 | 1.1:+70405867 | None:intergenic |
| CTCTCGCAAACCATATATTC+TGG | 0.321780 | 1.1:-70405877 | MS.gene88883:CDS |
| TGCCACAATGACCTACAATA+TGG | 0.321926 | 1.1:-70406491 | MS.gene88883:CDS |
| AAGGTTCTGGTTCGTTTATA+TGG | 0.325390 | 1.1:-70408935 | MS.gene88883:CDS |
| AGATGATGAAATAAATATTC+TGG | 0.330658 | 1.1:-70406552 | MS.gene88883:CDS |
| CAGCGAACTGTTCACAGTTT+CGG | 0.335477 | 1.1:+70405628 | None:intergenic |
| AACTGTTCACAGTTTCGGTT+TGG | 0.348089 | 1.1:+70405633 | None:intergenic |
| CACTTCCATTAATTCTTCTT+GGG | 0.353478 | 1.1:+70409093 | None:intergenic |
| TGACTCTGAAATATCATCTT+TGG | 0.359929 | 1.1:-70406809 | MS.gene88883:CDS |
| GGCAAATCATTTCTGTGAAA+TGG | 0.366684 | 1.1:-70406293 | MS.gene88883:CDS |
| AGTGATTACTGCGGTGGCTT+CGG | 0.393064 | 1.1:-70409074 | MS.gene88883:CDS |
| CTTCTTGCTCGTTTCACTAC+TGG | 0.401801 | 1.1:-70408830 | MS.gene88883:CDS |
| TTGGTCATTGCACCTTTCAA+TGG | 0.406927 | 1.1:+70409007 | None:intergenic |
| ACTGTTCACAGTTTCGGTTT+GGG | 0.408491 | 1.1:+70405634 | None:intergenic |
| GTACAAAGAAGGCTCATATC+TGG | 0.408997 | 1.1:-70406744 | MS.gene88883:CDS |
| TGTGAAGGATATCAAGAGAT+TGG | 0.415057 | 1.1:-70406518 | MS.gene88883:CDS |
| TGGTGATTTGAGGAAGGTTC+TGG | 0.417603 | 1.1:-70408948 | MS.gene88883:CDS |
| TTTGCCAGGTCATACGCAAT+AGG | 0.420297 | 1.1:+70406310 | None:intergenic |
| GGTTTCAGCAGTATTGGTTA+AGG | 0.422059 | 1.1:-70405691 | MS.gene88883:CDS |
| TCATAATGTTACCATATTGT+AGG | 0.424013 | 1.1:+70406480 | None:intergenic |
| GGCAGAGGTTTCAGCAGTAT+TGG | 0.426230 | 1.1:-70405697 | MS.gene88883:CDS |
| TGATTCACCTTAGCATTGCT+TGG | 0.458377 | 1.1:+70405926 | None:intergenic |
| TCTCGCAAACCATATATTCT+GGG | 0.466032 | 1.1:-70405876 | MS.gene88883:CDS |
| CATATATTCTGGGGCTTATG+GGG | 0.475167 | 1.1:-70405866 | MS.gene88883:CDS |
| GAACATGAGGTGTATCACTA+TGG | 0.476295 | 1.1:+70406260 | None:intergenic |
| TTCCATAAGCTTCATATGCC+TGG | 0.488274 | 1.1:-70406766 | MS.gene88883:CDS |
| TTTCACAGAAATGATTTGCC+AGG | 0.500589 | 1.1:+70406296 | None:intergenic |
| ACAATATGGTAACATTATGA+TGG | 0.504904 | 1.1:-70406477 | MS.gene88883:CDS |
| CAGAACTCGAGGAGCGTCAA+AGG | 0.515090 | 1.1:-70406100 | MS.gene88883:CDS |
| ATATGAGCCTTCTTTGTACC+AGG | 0.520134 | 1.1:+70406748 | None:intergenic |
| CGTGTCTATCTCAGTTCTGA+AGG | 0.521286 | 1.1:-70406071 | MS.gene88883:intron |
| TGAAATAAATATTCTGGAGA+AGG | 0.522645 | 1.1:-70406546 | MS.gene88883:CDS |
| CTGGTTCGTTTATATGGCGA+AGG | 0.529914 | 1.1:-70408929 | MS.gene88883:CDS |
| GTTGATGAGTCCAATAAAGT+AGG | 0.531218 | 1.1:+70405665 | None:intergenic |
| CTCATATCTGGCAGAGAATG+AGG | 0.535155 | 1.1:-70406732 | MS.gene88883:intron |
| AAGACAATTGAATTATTGAA+AGG | 0.536432 | 1.1:-70409124 | MS.gene88883:CDS |
| CTTGACTACAGTAAATATCC+TGG | 0.536643 | 1.1:-70406238 | MS.gene88883:intron |
| CTCTGAAATATCATCTTTGG+TGG | 0.538937 | 1.1:-70406806 | MS.gene88883:CDS |
| TTGCAAGTGATTCCATTGAA+AGG | 0.546711 | 1.1:-70409019 | MS.gene88883:CDS |
| ACAAAGAATATGCAAGGCAG+AGG | 0.550525 | 1.1:-70405712 | MS.gene88883:CDS |
| CAATCCTATTGCGTATGACC+TGG | 0.557083 | 1.1:-70406314 | MS.gene88883:CDS |
| TTTGAGTGTATCTCAAAGCA+TGG | 0.558795 | 1.1:-70408866 | MS.gene88883:CDS |
| TCATATGCCTGGTACAAAGA+AGG | 0.559823 | 1.1:-70406755 | MS.gene88883:CDS |
| TTGATTACAAAGAATATGCA+AGG | 0.569982 | 1.1:-70405718 | MS.gene88883:CDS |
| CTGGAGAAGGAGTTGTGTGA+AGG | 0.572508 | 1.1:-70406533 | MS.gene88883:CDS |
| AGTTTCGGTTTGGGCAACAA+TGG | 0.574842 | 1.1:+70405643 | None:intergenic |
| CAAGAAACCAAGCAATGCTA+AGG | 0.579970 | 1.1:-70405933 | MS.gene88883:CDS |
| AAATGATGGTGATTTGAGGA+AGG | 0.580359 | 1.1:-70408954 | MS.gene88883:CDS |
| AATGGAAGTGATTACTGCGG+TGG | 0.583663 | 1.1:-70409080 | MS.gene88883:CDS |
| TTTCACTACTGGTAGAGTTG+AGG | 0.595164 | 1.1:-70408819 | MS.gene88883:CDS |
| TACCATATTGTAGGTCATTG+TGG | 0.595534 | 1.1:+70406489 | None:intergenic |
| GTGAAACGAGCAAGAAGGCG+TGG | 0.597624 | 1.1:+70408836 | None:intergenic |
| CAAAGTGTTCACATCATCGA+TGG | 0.599429 | 1.1:+70409039 | None:intergenic |
| CAAAAGTTTGTGCTCCCCAA+AGG | 0.603866 | 1.1:-70406603 | MS.gene88883:CDS |
| CAGTAGTGAAACGAGCAAGA+AGG | 0.618606 | 1.1:+70408831 | None:intergenic |
| AAGATGATATTTCAGAGTCA+CGG | 0.624385 | 1.1:+70406812 | None:intergenic |
| TGTATCTCAAAGCATGGACA+AGG | 0.636753 | 1.1:-70408860 | MS.gene88883:CDS |
| CTCGCAAACCATATATTCTG+GGG | 0.653675 | 1.1:-70405875 | MS.gene88883:CDS |
| TAAGGTGAATCAGTTAATGA+CGG | 0.658131 | 1.1:-70405915 | MS.gene88883:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.664678 | 1.1:+70406247 | None:intergenic |
| ATATGATGAACCAGAACTCG+AGG | 0.670863 | 1.1:-70406111 | MS.gene88883:intron |
| AATCACACACATGATGCTAG+TGG | 0.675552 | 1.1:+70405605 | None:intergenic |
| ATTAATGGAAGTGATTACTG+CGG | 0.740787 | 1.1:-70409083 | MS.gene88883:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTCAATAGAAAATA+AGG | - | chr1.1:70406731-70406750 | MS.gene88883:intron | 10.0% |
| !! | TAATAGAACTAAATAATTTA+TGG | - | chr1.1:70407638-70407657 | MS.gene88883:intron | 10.0% |
| !!! | ATTGGATTTTTTTATTAAAA+TGG | + | chr1.1:70406156-70406175 | None:intergenic | 10.0% |
| !!! | CATAATTTTTTTAAATCAAA+TGG | + | chr1.1:70408062-70408081 | None:intergenic | 10.0% |
| !!! | TATTTACATTTTTAAGTTTA+AGG | - | chr1.1:70407843-70407862 | MS.gene88883:intron | 10.0% |
| !! | ACAAAACAGTAAAATATAAT+TGG | + | chr1.1:70406559-70406578 | None:intergenic | 15.0% |
| !! | ACTTCTTAACTTATAAAATT+AGG | + | chr1.1:70406296-70406315 | None:intergenic | 15.0% |
| !! | ATATCAATAAAAACAAAAAC+AGG | + | chr1.1:70408577-70408596 | None:intergenic | 15.0% |
| !! | ATATTATCTTGCAAATTTAA+GGG | - | chr1.1:70407137-70407156 | MS.gene88883:intron | 15.0% |
| !! | CTTCTTAACTTATAAAATTA+GGG | + | chr1.1:70406295-70406314 | None:intergenic | 15.0% |
| !!! | ATTTTATAAGTTAAGAAGTT+AGG | - | chr1.1:70406297-70406316 | MS.gene88883:CDS | 15.0% |
| !!! | TCAAATTTCTTTTTTAAAGA+TGG | + | chr1.1:70407367-70407386 | None:intergenic | 15.0% |
| !!! | TCTTTAAAAAAGAAATTTGA+TGG | - | chr1.1:70407367-70407386 | MS.gene88883:intron | 15.0% |
| !!! | TTCAATTGATTTTAATTCTT+TGG | + | chr1.1:70407780-70407799 | None:intergenic | 15.0% |
| !! | AAAAAAGAAATTTGATGGAA+CGG | - | chr1.1:70407372-70407391 | MS.gene88883:intron | 20.0% |
| !! | AAGACAATTGAATTATTGAA+AGG | - | chr1.1:70405616-70405635 | MS.gene88883:CDS | 20.0% |
| !! | AAGATAAAGGGAATAAATTA+AGG | + | chr1.1:70407277-70407296 | None:intergenic | 20.0% |
| !! | AATTTATGTGTCTGTAAAAA+AGG | + | chr1.1:70407678-70407697 | None:intergenic | 20.0% |
| !! | ACTAAACTAAACTAACTTAT+AGG | + | chr1.1:70406764-70406783 | None:intergenic | 20.0% |
| !! | AGAATAAATAACATGAAGAA+AGG | + | chr1.1:70407465-70407484 | None:intergenic | 20.0% |
| !! | AGATAAAGGGAATAAATTAA+GGG | + | chr1.1:70407276-70407295 | None:intergenic | 20.0% |
| !! | AGATGATGAAATAAATATTC+TGG | - | chr1.1:70408188-70408207 | MS.gene88883:intron | 20.0% |
| !! | ATTTATCTGAAAAACTTCAT+TGG | + | chr1.1:70405755-70405774 | None:intergenic | 20.0% |
| !! | CAATAATTCAATTGTCTTTA+TGG | + | chr1.1:70405614-70405633 | None:intergenic | 20.0% |
| !! | CATATTATCTTGCAAATTTA+AGG | - | chr1.1:70407136-70407155 | MS.gene88883:intron | 20.0% |
| !! | CTAAATAATTTATGGAACTA+AGG | - | chr1.1:70407646-70407665 | MS.gene88883:intron | 20.0% |
| !! | GCATGTTTCTTTATTATTAT+TGG | + | chr1.1:70407489-70407508 | None:intergenic | 20.0% |
| !! | TAAATGTTCATTAGTAAACT+TGG | - | chr1.1:70407615-70407634 | MS.gene88883:intron | 20.0% |
| !! | TATATAAAGTAGATCAAGAT+CGG | + | chr1.1:70407100-70407119 | None:intergenic | 20.0% |
| !! | TATTCAATAGAAAATAAGGT+AGG | - | chr1.1:70406735-70406754 | MS.gene88883:CDS | 20.0% |
| !!! | AAAATCAATTTTGTTGCAAT+TGG | - | chr1.1:70406480-70406499 | MS.gene88883:CDS | 20.0% |
| !!! | AATTTATTCCCTTTATCTTT+TGG | - | chr1.1:70407278-70407297 | MS.gene88883:intron | 20.0% |
| !!! | ATGAAGTTTTTCAGATAAAT+TGG | - | chr1.1:70405755-70405774 | MS.gene88883:intron | 20.0% |
| !!! | CAGAAATATTTCTATCATAT+TGG | + | chr1.1:70406174-70406193 | None:intergenic | 20.0% |
| !!! | CTATTCTTCAATTTTGAATT+AGG | + | chr1.1:70406323-70406342 | None:intergenic | 20.0% |
| !!! | TAATTTGTAGAACTAAAAAG+TGG | - | chr1.1:70406101-70406120 | MS.gene88883:intron | 20.0% |
| !!! | TATAAGTAACTATCATGTTT+TGG | + | chr1.1:70408351-70408370 | None:intergenic | 20.0% |
| !!! | TATTTTCTAAATTTACTTGC+AGG | + | chr1.1:70406689-70406708 | None:intergenic | 20.0% |
| !!! | TGTTGAAATTTTCTTCAATA+GGG | - | chr1.1:70405834-70405853 | MS.gene88883:intron | 20.0% |
| ! | ACAATATGGTAACATTATGA+TGG | - | chr1.1:70408263-70408282 | MS.gene88883:intron | 25.0% |
| ! | ATAACATGAAGAAAGGAATA+TGG | + | chr1.1:70407458-70407477 | None:intergenic | 25.0% |
| ! | CAAAGGAAACAAAAAAATTC+GGG | - | chr1.1:70408154-70408173 | MS.gene88883:intron | 25.0% |
| ! | CCAAAGGAAACAAAAAAATT+CGG | - | chr1.1:70408153-70408172 | MS.gene88883:intron | 25.0% |
| ! | CTAAGAACAAAAAATTTACC+AGG | + | chr1.1:70408523-70408542 | None:intergenic | 25.0% |
| ! | GCAAGATAATATGTTATGAT+GGG | + | chr1.1:70407129-70407148 | None:intergenic | 25.0% |
| ! | TAACATGAAGAAAGGAATAT+GGG | + | chr1.1:70407457-70407476 | None:intergenic | 25.0% |
| ! | TATGTATGCATAGAATGATA+AGG | - | chr1.1:70407559-70407578 | MS.gene88883:intron | 25.0% |
| ! | TCATAATGTTACCATATTGT+AGG | + | chr1.1:70408263-70408282 | None:intergenic | 25.0% |
| ! | TGATCTCAAAAGCTAAAATA+TGG | + | chr1.1:70407181-70407200 | None:intergenic | 25.0% |
| ! | TGCAAGATAATATGTTATGA+TGG | + | chr1.1:70407130-70407149 | None:intergenic | 25.0% |
| ! | TTGAAGTTTATCATGTACTT+TGG | - | chr1.1:70406034-70406053 | MS.gene88883:intron | 25.0% |
| ! | TTGAATAGAACAAACCAAAT+AGG | + | chr1.1:70406524-70406543 | None:intergenic | 25.0% |
| ! | TTGACATATAAGAACCTATT+TGG | - | chr1.1:70406507-70406526 | MS.gene88883:CDS | 25.0% |
| ! | TTGATTACAAAGAATATGCA+AGG | - | chr1.1:70409022-70409041 | MS.gene88883:CDS | 25.0% |
| !! | GTGTTGAAATTTTCTTCAAT+AGG | - | chr1.1:70405833-70405852 | MS.gene88883:intron | 25.0% |
| !! | TGAAATAAATATTCTGGAGA+AGG | - | chr1.1:70408194-70408213 | MS.gene88883:intron | 25.0% |
| !!! | AAATCACCATCATTTTTTGT+TGG | + | chr1.1:70405781-70405800 | None:intergenic | 25.0% |
| !!! | CGAATTTTTTTGTTTCCTTT+GGG | + | chr1.1:70408155-70408174 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTGTTTCCTTTG+GGG | + | chr1.1:70408154-70408173 | None:intergenic | 25.0% |
| !!! | TTTTTTGCATCATGAAACTA+TGG | - | chr1.1:70406377-70406396 | MS.gene88883:intron | 25.0% |
| AAGATGATATTTCAGAGTCA+CGG | + | chr1.1:70407931-70407950 | None:intergenic | 30.0% | |
| AATTGGCCAACAAAAAATGA+TGG | - | chr1.1:70405772-70405791 | MS.gene88883:intron | 30.0% | |
| ACAAAAAGGAACACATTAAC+AGG | + | chr1.1:70407731-70407750 | None:intergenic | 30.0% | |
| AGGAATATGGGAAAAAAGAA+TGG | + | chr1.1:70407445-70407464 | None:intergenic | 30.0% | |
| AGGGAATAAATTAAGGGAAA+AGG | + | chr1.1:70407270-70407289 | None:intergenic | 30.0% | |
| ATTAATGGAAGTGATTACTG+CGG | - | chr1.1:70405657-70405676 | MS.gene88883:CDS | 30.0% | |
| CACTTCCATTAATTCTTCTT+GGG | + | chr1.1:70405650-70405669 | None:intergenic | 30.0% | |
| CTGGGTAGGTAATATAATTA+GGG | - | chr1.1:70406210-70406229 | MS.gene88883:intron | 30.0% | |
| GAAAAATTTCTTGCAGTGAA+TGG | - | chr1.1:70407045-70407064 | MS.gene88883:intron | 30.0% | |
| GATAAGAAAATCACATACTC+TGG | + | chr1.1:70405959-70405978 | None:intergenic | 30.0% | |
| TAAGGTGAATCAGTTAATGA+CGG | - | chr1.1:70408825-70408844 | MS.gene88883:CDS | 30.0% | |
| TACAAATTAGTATGTCAGCA+AGG | + | chr1.1:70408610-70408629 | None:intergenic | 30.0% | |
| TCACACTAATTGTAAGCTAA+TGG | - | chr1.1:70408304-70408323 | MS.gene88883:intron | 30.0% | |
| TCACTTCCATTAATTCTTCT+TGG | + | chr1.1:70405651-70405670 | None:intergenic | 30.0% | |
| TTTGTCTTTCCAATCAGAAT+CGG | - | chr1.1:70406981-70407000 | MS.gene88883:intron | 30.0% | |
| ! | AGACAAGTTCTTTTATTGGT+AGG | - | chr1.1:70406798-70406817 | MS.gene88883:CDS | 30.0% |
| ! | CAAAAAATGATGGTGATTTG+AGG | - | chr1.1:70405782-70405801 | MS.gene88883:intron | 30.0% |
| ! | GAAAGAGTTTTACCAATACA+AGG | - | chr1.1:70407797-70407816 | MS.gene88883:intron | 30.0% |
| ! | GTCAAGACAAGTTCTTTTAT+TGG | - | chr1.1:70406794-70406813 | MS.gene88883:CDS | 30.0% |
| ! | TGTTTTCCATGTGTTTTACT+AGG | - | chr1.1:70408097-70408116 | MS.gene88883:intron | 30.0% |
| !! | TGACTCTGAAATATCATCTT+TGG | - | chr1.1:70407931-70407950 | MS.gene88883:intron | 30.0% |
| !! | TTTGATTGCTTTGAGAAGAT+AGG | - | chr1.1:70406414-70406433 | MS.gene88883:intron | 30.0% |
| !!! | CCGAATTTTTTTGTTTCCTT+TGG | + | chr1.1:70408156-70408175 | None:intergenic | 30.0% |
| !!! | GTAACTATCATGTTTTGGAA+AGG | + | chr1.1:70408346-70408365 | None:intergenic | 30.0% |
| !!! | TGCAGCAAATTATTTTTGCT+GGG | - | chr1.1:70406192-70406211 | MS.gene88883:intron | 30.0% |
| CAAATTCGTCATCCTTGTAT+TGG | + | chr1.1:70407812-70407831 | None:intergenic | 35.0% | |
| CCATTGCTCCAAAAGATAAA+GGG | + | chr1.1:70407289-70407308 | None:intergenic | 35.0% | |
| CGACAGAGTGAAATTCATAA+TGG | + | chr1.1:70408700-70408719 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+TGG | - | chr1.1:70408502-70408521 | MS.gene88883:intron | 35.0% | |
| GACATCAACAACAGACAAAA+AGG | + | chr1.1:70407745-70407764 | None:intergenic | 35.0% | |
| GCTGGGTAGGTAATATAATT+AGG | - | chr1.1:70406209-70406228 | MS.gene88883:intron | 35.0% | |
| GGCAAATCATTTCTGTGAAA+TGG | - | chr1.1:70408447-70408466 | MS.gene88883:intron | 35.0% | |
| GTTAAGGAAGCCTACTTTAT+TGG | - | chr1.1:70409065-70409084 | MS.gene88883:CDS | 35.0% | |
| GTTAATGAGAACACCTATTC+AGG | + | chr1.1:70407021-70407040 | None:intergenic | 35.0% | |
| TAAAGTAGATCAAGATCGGA+CGG | + | chr1.1:70407096-70407115 | None:intergenic | 35.0% | |
| TACAATCACTCTTTGTACAC+AGG | - | chr1.1:70408784-70408803 | MS.gene88883:intron | 35.0% | |
| TACCATATTGTAGGTCATTG+TGG | + | chr1.1:70408254-70408273 | None:intergenic | 35.0% | |
| TACTCCAAAACAACCAAAAG+AGG | + | chr1.1:70407326-70407345 | None:intergenic | 35.0% | |
| TCCATTGCTCCAAAAGATAA+AGG | + | chr1.1:70407290-70407309 | None:intergenic | 35.0% | |
| TCTCGCAAACCATATATTCT+GGG | - | chr1.1:70408864-70408883 | MS.gene88883:CDS | 35.0% | |
| TGCATCCCAAGAAGAATTAA+TGG | - | chr1.1:70405642-70405661 | MS.gene88883:CDS | 35.0% | |
| TGTGAAGGATATCAAGAGAT+TGG | - | chr1.1:70408222-70408241 | MS.gene88883:intron | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | + | chr1.1:70408496-70408515 | None:intergenic | 35.0% | |
| TTGCAAGTGATTCCATTGAA+AGG | - | chr1.1:70405721-70405740 | MS.gene88883:CDS | 35.0% | |
| TTTGAGTGTATCTCAAAGCA+TGG | - | chr1.1:70405874-70405893 | MS.gene88883:CDS | 35.0% | |
| ! | AAATGATGGTGATTTGAGGA+AGG | - | chr1.1:70405786-70405805 | MS.gene88883:intron | 35.0% |
| ! | CATGTGTTTTACTAGGAACT+GGG | - | chr1.1:70408104-70408123 | MS.gene88883:intron | 35.0% |
| ! | GAATCCAATTTCCTCTAAGA+GGG | + | chr1.1:70406835-70406854 | None:intergenic | 35.0% |
| ! | GTTGATGAGTCCAATAAAGT+AGG | + | chr1.1:70409078-70409097 | None:intergenic | 35.0% |
| ! | TTTCACAGAAATGATTTGCC+AGG | + | chr1.1:70408447-70408466 | None:intergenic | 35.0% |
| !! | AAGGTTCTGGTTCGTTTATA+TGG | - | chr1.1:70405805-70405824 | MS.gene88883:intron | 35.0% |
| !! | CTCTGAAATATCATCTTTGG+TGG | - | chr1.1:70407934-70407953 | MS.gene88883:intron | 35.0% |
| !! | TTTGCCTCTTTTGGTTGTTT+TGG | - | chr1.1:70407319-70407338 | MS.gene88883:intron | 35.0% |
| !!! | CTGCAGCAAATTATTTTTGC+TGG | - | chr1.1:70406191-70406210 | MS.gene88883:intron | 35.0% |
| !!! | GCAAATTATTTTTGCTGGGT+AGG | - | chr1.1:70406196-70406215 | MS.gene88883:intron | 35.0% |
| !!! | TTATCTTTTGGAGCAATGGA+GGG | - | chr1.1:70407290-70407309 | MS.gene88883:intron | 35.0% |
| !!! | TTTATCTTTTGGAGCAATGG+AGG | - | chr1.1:70407289-70407308 | MS.gene88883:intron | 35.0% |
| AACTGTTCACAGTTTCGGTT+TGG | + | chr1.1:70409110-70409129 | None:intergenic | 40.0% | |
| AAGTCATCGATGTCCTGAAT+AGG | - | chr1.1:70407005-70407024 | MS.gene88883:intron | 40.0% | |
| ACAAAGAATATGCAAGGCAG+AGG | - | chr1.1:70409028-70409047 | MS.gene88883:CDS | 40.0% | |
| ACTGTTCACAGTTTCGGTTT+GGG | + | chr1.1:70409109-70409128 | None:intergenic | 40.0% | |
| AGTGAATGGAAACACGCATT+CGG | - | chr1.1:70407059-70407078 | MS.gene88883:intron | 40.0% | |
| ATATGAGCCTTCTTTGTACC+AGG | + | chr1.1:70407995-70408014 | None:intergenic | 40.0% | |
| ATATGATGAACCAGAACTCG+AGG | - | chr1.1:70408629-70408648 | MS.gene88883:intron | 40.0% | |
| CAAGAAACCAAGCAATGCTA+AGG | - | chr1.1:70408807-70408826 | MS.gene88883:CDS | 40.0% | |
| CAGTTGACAAACTAGTATGC+TGG | + | chr1.1:70407701-70407720 | None:intergenic | 40.0% | |
| CCAGTTCCTAGTAAAACACA+TGG | + | chr1.1:70408106-70408125 | None:intergenic | 40.0% | |
| CTCGCAAACCATATATTCTG+GGG | - | chr1.1:70408865-70408884 | MS.gene88883:CDS | 40.0% | |
| CTCTCGCAAACCATATATTC+TGG | - | chr1.1:70408863-70408882 | MS.gene88883:CDS | 40.0% | |
| GAACATGAGGTGTATCACTA+TGG | + | chr1.1:70408483-70408502 | None:intergenic | 40.0% | |
| GAATGGAATCATGTGCTCTT+AGG | - | chr1.1:70407408-70407427 | MS.gene88883:intron | 40.0% | |
| GATGACTTTCCGATTCTGAT+TGG | + | chr1.1:70406993-70407012 | None:intergenic | 40.0% | |
| GGAAACAAAAAAATTCGGGC+TGG | - | chr1.1:70408158-70408177 | MS.gene88883:intron | 40.0% | |
| GGAACACACAATACTCATTG+TGG | + | chr1.1:70408556-70408575 | None:intergenic | 40.0% | |
| GGAATCCAATTTCCTCTAAG+AGG | + | chr1.1:70406836-70406855 | None:intergenic | 40.0% | |
| GTACAAAGAAGGCTCATATC+TGG | - | chr1.1:70407996-70408015 | MS.gene88883:intron | 40.0% | |
| TAAGCCCTCTTAGAGGAAAT+TGG | - | chr1.1:70406828-70406847 | MS.gene88883:CDS | 40.0% | |
| TACCAGGCATATGAAGCTTA+TGG | + | chr1.1:70407979-70407998 | None:intergenic | 40.0% | |
| TCATATGCCTGGTACAAAGA+AGG | - | chr1.1:70407985-70408004 | MS.gene88883:intron | 40.0% | |
| TGATTCACCTTAGCATTGCT+TGG | + | chr1.1:70408817-70408836 | None:intergenic | 40.0% | |
| TGCCACAATGACCTACAATA+TGG | - | chr1.1:70408249-70408268 | MS.gene88883:intron | 40.0% | |
| TGTATCTCAAAGCATGGACA+AGG | - | chr1.1:70405880-70405899 | MS.gene88883:CDS | 40.0% | |
| TTACCTATAAGCCCTCTTAG+AGG | - | chr1.1:70406821-70406840 | MS.gene88883:CDS | 40.0% | |
| TTCCATAAGCTTCATATGCC+TGG | - | chr1.1:70407974-70407993 | MS.gene88883:intron | 40.0% | |
| TTGGTCATTGCACCTTTCAA+TGG | + | chr1.1:70405736-70405755 | None:intergenic | 40.0% | |
| TTTCACTACTGGTAGAGTTG+AGG | - | chr1.1:70405921-70405940 | MS.gene88883:CDS | 40.0% | |
| ! | ACGGTATTGAGTCAATGGAA+TGG | - | chr1.1:70407391-70407410 | MS.gene88883:intron | 40.0% |
| ! | ATGGAACGGTATTGAGTCAA+TGG | - | chr1.1:70407386-70407405 | MS.gene88883:intron | 40.0% |
| ! | CAAAGTGTTCACATCATCGA+TGG | + | chr1.1:70405704-70405723 | None:intergenic | 40.0% |
| ! | CCATGTGTTTTACTAGGAAC+TGG | - | chr1.1:70408103-70408122 | MS.gene88883:intron | 40.0% |
| ! | TGTTTTACTAGGAACTGGGT+TGG | - | chr1.1:70408108-70408127 | MS.gene88883:intron | 40.0% |
| ! | TTTCCTCTAAGAGGGCTTAT+AGG | + | chr1.1:70406827-70406846 | None:intergenic | 40.0% |
| !! | ACCATATATTCTGGGGCTTA+TGG | - | chr1.1:70408872-70408891 | MS.gene88883:CDS | 40.0% |
| !! | CATATATTCTGGGGCTTATG+GGG | - | chr1.1:70408874-70408893 | MS.gene88883:CDS | 40.0% |
| !! | CCATATATTCTGGGGCTTAT+GGG | - | chr1.1:70408873-70408892 | MS.gene88883:CDS | 40.0% |
| !! | GGTTTCAGCAGTATTGGTTA+AGG | - | chr1.1:70409049-70409068 | MS.gene88883:CDS | 40.0% |
| !!! | CCCTTTATCTTTTGGAGCAA+TGG | - | chr1.1:70407286-70407305 | MS.gene88883:intron | 40.0% |
| !!! | CTCGCTTCTTCTCTTGTTTT+TGG | - | chr1.1:70407877-70407896 | MS.gene88883:intron | 40.0% |
| AAATTGGATTCCCGCAGTCA+AGG | - | chr1.1:70406844-70406863 | MS.gene88883:intron | 45.0% | |
| AATGGAAGTGATTACTGCGG+TGG | - | chr1.1:70405660-70405679 | MS.gene88883:CDS | 45.0% | |
| CAAAAGTTTGTGCTCCCCAA+AGG | - | chr1.1:70408137-70408156 | MS.gene88883:intron | 45.0% | |
| CAATCCTATTGCGTATGACC+TGG | - | chr1.1:70408426-70408445 | MS.gene88883:intron | 45.0% | |
| CAGCGAACTGTTCACAGTTT+CGG | + | chr1.1:70409115-70409134 | None:intergenic | 45.0% | |
| CAGTAGTGAAACGAGCAAGA+AGG | + | chr1.1:70405912-70405931 | None:intergenic | 45.0% | |
| CCCATAAGCCCCAGAATATA+TGG | + | chr1.1:70408876-70408895 | None:intergenic | 45.0% | |
| CTCATATCTGGCAGAGAATG+AGG | - | chr1.1:70408008-70408027 | MS.gene88883:intron | 45.0% | |
| CTTCTTGCTCGTTTCACTAC+TGG | - | chr1.1:70405910-70405929 | MS.gene88883:CDS | 45.0% | |
| GGGCTTATGGGGACTTATTT+CGG | - | chr1.1:70408885-70408904 | MS.gene88883:CDS | 45.0% | |
| GTGAATGGAAACACGCATTC+GGG | - | chr1.1:70407060-70407079 | MS.gene88883:intron | 45.0% | |
| TGAATGCGTGTATCTCTGCA+GGG | + | chr1.1:70406879-70406898 | None:intergenic | 45.0% | |
| TGGTGATTTGAGGAAGGTTC+TGG | - | chr1.1:70405792-70405811 | MS.gene88883:intron | 45.0% | |
| TTGAATGCGTGTATCTCTGC+AGG | + | chr1.1:70406880-70406899 | None:intergenic | 45.0% | |
| TTTGCCAGGTCATACGCAAT+AGG | + | chr1.1:70408433-70408452 | None:intergenic | 45.0% | |
| ! | CGTGTCTATCTCAGTTCTGA+AGG | - | chr1.1:70408669-70408688 | MS.gene88883:intron | 45.0% |
| ! | CTGGTTCGTTTATATGGCGA+AGG | - | chr1.1:70405811-70405830 | MS.gene88883:intron | 45.0% |
| ! | GGGCTATCATTTGCCTCTTT+TGG | - | chr1.1:70407310-70407329 | MS.gene88883:intron | 45.0% |
| !! | AGTTTCGGTTTGGGCAACAA+TGG | + | chr1.1:70409100-70409119 | None:intergenic | 45.0% |
| !! | CTTTGGGGAGCACAAACTTT+TGG | + | chr1.1:70408139-70408158 | None:intergenic | 45.0% |
| !! | TATAATATAGATATAAAAAA+AGG | + | chr1.1:70405981-70406000 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTATTTTGATAT+AGG | - | chr1.1:70408384-70408403 | MS.gene88883:intron | 5.0% |
| !!! | TTTATATCTATATTATATTT+TGG | - | chr1.1:70405984-70406003 | MS.gene88883:intron | 5.0% |
| ACACGCATTCAAGACATCCG+TGG | - | chr1.1:70406888-70406907 | MS.gene88883:intron | 50.0% | |
| AGTGATTACTGCGGTGGCTT+CGG | - | chr1.1:70405666-70405685 | MS.gene88883:CDS | 50.0% | |
| CGATCTTGATCGAACGACCA+CGG | + | chr1.1:70406908-70406927 | None:intergenic | 50.0% | |
| CGTGGTCGTTCGATCAAGAT+CGG | - | chr1.1:70406906-70406925 | MS.gene88883:intron | 50.0% | |
| CTGGAGAAGGAGTTGTGTGA+AGG | - | chr1.1:70408207-70408226 | MS.gene88883:intron | 50.0% | |
| GAATGCGTGTATCTCTGCAG+GGG | + | chr1.1:70406878-70406897 | None:intergenic | 50.0% | |
| GGACGGTCAAGATTCAAGCT+TGG | - | chr1.1:70406927-70406946 | MS.gene88883:intron | 50.0% | |
| GGCAGAGGTTTCAGCAGTAT+TGG | - | chr1.1:70409043-70409062 | MS.gene88883:CDS | 50.0% | |
| GTCGTTCGATCAAGATCGGA+CGG | - | chr1.1:70406910-70406929 | MS.gene88883:intron | 50.0% | |
| ACTGCGGTGGCTTCGGATTT+AGG | - | chr1.1:70405673-70405692 | MS.gene88883:CDS | 55.0% | |
| CTTTGACGCTCCTCGAGTTC+TGG | + | chr1.1:70408642-70408661 | None:intergenic | 55.0% | |
| GATTCCCGCAGTCAAGGATC+CGG | - | chr1.1:70406850-70406869 | MS.gene88883:intron | 55.0% | |
| GTGAAACGAGCAAGAAGGCG+TGG | + | chr1.1:70405907-70405926 | None:intergenic | 55.0% | |
| !! | CAGAACTCGAGGAGCGTCAA+AGG | - | chr1.1:70408640-70408659 | MS.gene88883:intron | 55.0% |
| GTGTATCTCTGCAGGGGAGC+CGG | + | chr1.1:70406872-70406891 | None:intergenic | 60.0% | |
| GGAGCCGGATCCTTGACTGC+GGG | + | chr1.1:70406857-70406876 | None:intergenic | 65.0% | |
| GGGAGCCGGATCCTTGACTG+CGG | + | chr1.1:70406858-70406877 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 70405607 | 70409155 | 70405607 | ID=MS.gene88883 |
| chr1.1 | mRNA | 70405607 | 70409155 | 70405607 | ID=MS.gene88883.t1;Parent=MS.gene88883 |
| chr1.1 | exon | 70408802 | 70409155 | 70408802 | ID=MS.gene88883.t1.exon1;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70408802 | 70409155 | 70408802 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70406733 | 70406854 | 70406733 | ID=MS.gene88883.t1.exon2;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70406733 | 70406854 | 70406733 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70406448 | 70406643 | 70406448 | ID=MS.gene88883.t1.exon3;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70406448 | 70406643 | 70406448 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70406239 | 70406356 | 70406239 | ID=MS.gene88883.t1.exon4;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70406239 | 70406356 | 70406239 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70406072 | 70406119 | 70406072 | ID=MS.gene88883.t1.exon5;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70406072 | 70406119 | 70406072 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70405856 | 70405956 | 70405856 | ID=MS.gene88883.t1.exon6;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70405856 | 70405956 | 70405856 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| chr1.1 | exon | 70405607 | 70405762 | 70405607 | ID=MS.gene88883.t1.exon7;Parent=MS.gene88883.t1 |
| chr1.1 | CDS | 70405607 | 70405762 | 70405607 | ID=cds.MS.gene88883.t1;Parent=MS.gene88883.t1 |
| Gene Sequence |
| Protein sequence |
