Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90610.t1 | XP_003616826.1 | 93.5 | 397 | 26 | 0 | 1 | 397 | 1 | 397 | 1.10E-200 | 709.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90610.t1 | Q9SF32 | 28.8 | 229 | 142 | 6 | 53 | 268 | 60 | 280 | 1.5e-07 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90610.t1 | G7K7F4 | 93.5 | 397 | 26 | 0 | 1 | 397 | 1 | 397 | 8.1e-201 | 709.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90610 | 0.834791 | 2.44E-56 | -1.69E-46 |
| MS.gene049341 | MS.gene90610 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene90610 | 0.81574 | 7.92E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene90610 | 0.814704 | 1.35E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene90610 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene90610 | 0.822198 | 2.69E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene90610 | 0.809849 | 1.54E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene90610 | 0.831913 | 1.27E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene90610 | 0.832118 | 1.13E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene90610 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene90610 | 0.834053 | 3.74E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene90610 | 0.836446 | 9.31E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene90610 | 0.807083 | 6.01E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene90610 | 0.848901 | 4.56E-60 | -1.69E-46 |
| MS.gene05157 | MS.gene90610 | 0.824808 | 6.61E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene90610 | 0.83892 | 2.16E-57 | -1.69E-46 |
| MS.gene051720 | MS.gene90610 | 0.84289 | 1.96E-58 | -1.69E-46 |
| MS.gene052000 | MS.gene90610 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene052133 | MS.gene90610 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene90610 | 0.817691 | 2.89E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene90610 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene90610 | 0.8586 | 7.37E-63 | -1.69E-46 |
| MS.gene052561 | MS.gene90610 | 0.816405 | 5.62E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene90610 | 0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene90610 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene052732 | MS.gene90610 | 0.846514 | 2.07E-59 | -1.69E-46 |
| MS.gene052863 | MS.gene90610 | 0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene90610 | 0.817923 | 2.56E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene90610 | 0.80294 | 4.42E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene90610 | 0.874125 | 8.62E-68 | -1.69E-46 |
| MS.gene053164 | MS.gene90610 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene053174 | MS.gene90610 | 0.826838 | 2.18E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene90610 | 0.870065 | 1.93E-66 | -1.69E-46 |
| MS.gene054550 | MS.gene90610 | 0.816924 | 4.30E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene90610 | 0.873472 | 1.43E-67 | -1.69E-46 |
| MS.gene05458 | MS.gene90610 | 0.805579 | 1.25E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene90610 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene90610 | 0.82041 | 6.96E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene90610 | 0.87383 | 1.08E-67 | -1.69E-46 |
| MS.gene055466 | MS.gene90610 | 0.867566 | 1.25E-65 | -1.69E-46 |
| MS.gene055467 | MS.gene90610 | 0.818691 | 1.72E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene90610 | 0.863396 | 2.57E-64 | -1.69E-46 |
| MS.gene055469 | MS.gene90610 | 0.864996 | 8.13E-65 | -1.69E-46 |
| MS.gene055513 | MS.gene90610 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene90610 | 0.853194 | 2.81E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene90610 | -0.853325 | 2.57E-61 | -1.69E-46 |
| MS.gene055890 | MS.gene90610 | 0.866311 | 3.13E-65 | -1.69E-46 |
| MS.gene055891 | MS.gene90610 | 0.864784 | 9.47E-65 | -1.69E-46 |
| MS.gene056043 | MS.gene90610 | -0.849629 | 2.86E-60 | -1.69E-46 |
| MS.gene056308 | MS.gene90610 | 0.840593 | 7.92E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene90610 | 0.823399 | 1.41E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene90610 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene90610 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene90610 | 0.846371 | 2.26E-59 | -1.69E-46 |
| MS.gene058360 | MS.gene90610 | 0.801393 | 9.20E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene90610 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene90610 | 0.83024 | 3.28E-55 | -1.69E-46 |
| MS.gene058909 | MS.gene90610 | 0.804003 | 2.66E-49 | -1.69E-46 |
| MS.gene058912 | MS.gene90610 | 0.800052 | 1.73E-48 | -1.69E-46 |
| MS.gene058945 | MS.gene90610 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene05894 | MS.gene90610 | 0.815142 | 1.08E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene90610 | 0.825448 | 4.66E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene90610 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene90610 | 0.818453 | 1.94E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene90610 | 0.837534 | 4.91E-57 | -1.69E-46 |
| MS.gene060603 | MS.gene90610 | 0.816381 | 5.69E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene90610 | 0.808262 | 3.38E-50 | -1.69E-46 |
| MS.gene060884 | MS.gene90610 | 0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene90610 | 0.823329 | 1.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90610.t1 | MTR_5g084680 | 93.451 | 397 | 26 | 0 | 1 | 397 | 1 | 397 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90610.t1 | AT5G35670 | 38.095 | 420 | 179 | 11 | 1 | 358 | 1 | 401 | 6.01e-73 | 234 |
| MS.gene90610.t1 | AT3G52290 | 32.370 | 173 | 102 | 4 | 104 | 265 | 107 | 275 | 2.04e-12 | 68.9 |
| MS.gene90610.t1 | AT3G09710 | 29.412 | 221 | 135 | 6 | 59 | 266 | 66 | 278 | 2.92e-12 | 68.6 |
| MS.gene90610.t1 | AT2G26410 | 33.520 | 179 | 98 | 6 | 104 | 266 | 147 | 320 | 4.56e-12 | 67.8 |
| MS.gene90610.t1 | AT2G26410 | 33.520 | 179 | 98 | 6 | 104 | 266 | 147 | 320 | 4.56e-12 | 67.8 |
Find 43 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTGGAGTTTGAATT+TGG | 0.239655 | 5.4:-66922937 | None:intergenic |
| TTCTTCTTCATTCAATGATT+TGG | 0.248388 | 5.4:-66922950 | None:intergenic |
| GAAGATTTGTTGAGTGATAA+AGG | 0.252466 | 5.4:+66922868 | MS.gene90610:CDS |
| ACAAGATTCTTAGATGCTTC+TGG | 0.335180 | 5.4:+66924925 | MS.gene90610:CDS |
| GTCTTGCTTATATCTTGCTT+TGG | 0.338818 | 5.4:-66925863 | None:intergenic |
| CTTAATATCCTTGTTAGCAT+TGG | 0.375292 | 5.4:-66925834 | None:intergenic |
| CTTTGATGGGTTTCACTGTT+GGG | 0.384078 | 5.4:+66922355 | None:intergenic |
| GAGATCATAAGCTCAGAAAA+TGG | 0.385879 | 5.4:+66923795 | MS.gene90610:CDS |
| AAGTCCAGACAGAAAATCTA+TGG | 0.389860 | 5.4:+66923845 | MS.gene90610:CDS |
| TTAAAATTAGTCTTTGTTGC+TGG | 0.390747 | 5.4:-66925048 | None:intergenic |
| ACTCAACAAATCTTCTTGTA+TGG | 0.397260 | 5.4:-66922860 | None:intergenic |
| GGCTTATGCTTTCTCACAAC+AGG | 0.400902 | 5.4:+66924551 | MS.gene90610:CDS |
| GCTTTGATGGGTTTCACTGT+TGG | 0.430356 | 5.4:+66922354 | None:intergenic |
| ACGTCAGTTGAAGTACAAAC+AGG | 0.432498 | 5.4:+66923870 | MS.gene90610:CDS |
| TCATCATGAAATTGATAACT+TGG | 0.439924 | 5.4:-66925105 | None:intergenic |
| ATCAGCATATAGAAGTTTCA+AGG | 0.448132 | 5.4:+66922990 | MS.gene90610:CDS |
| AACTAGAGCAATAAAGCAAA+AGG | 0.480169 | 5.4:+66923965 | MS.gene90610:CDS |
| GATGGGTTTCACTGTTGGGT+TGG | 0.505076 | 5.4:+66922359 | None:intergenic |
| AAGCAAGATATAAGCAAGAC+AGG | 0.513612 | 5.4:+66925866 | MS.gene90610:CDS |
| ATTCTTCCGAAAATAGAAGA+TGG | 0.516203 | 5.4:+66922737 | MS.gene90610:CDS |
| AATGAGGATGCAAGACAGAA+TGG | 0.520392 | 5.4:+66924500 | MS.gene90610:CDS |
| TTTCATACTGCTTCATCGCA+TGG | 0.540116 | 5.4:-66924867 | None:intergenic |
| ACATGGAACAAAATATGAGC+TGG | 0.546448 | 5.4:+66924788 | MS.gene90610:CDS |
| TTTAAATGAGAAAACTTCAG+TGG | 0.556481 | 5.4:-66923898 | None:intergenic |
| TGAGCTGGAGTTGGCTCGAA+AGG | 0.559271 | 5.4:+66924803 | MS.gene90610:CDS |
| TGGCTCAACCAATGCTAACA+AGG | 0.561036 | 5.4:+66925826 | MS.gene90610:CDS |
| AACAAAATATGAGCTGGAGT+TGG | 0.563437 | 5.4:+66924794 | MS.gene90610:CDS |
| AAGCTAGGAGAACTGTGTCT+AGG | 0.575861 | 5.4:+66925070 | MS.gene90610:CDS |
| TCGAAAGGTGGATGGCAACT+CGG | 0.586917 | 5.4:+66924818 | MS.gene90610:CDS |
| ATTTCATGATGAACATACAA+AGG | 0.587203 | 5.4:+66925116 | MS.gene90610:CDS |
| AAGCTGAATCTTCTTCTGCA+AGG | 0.601371 | 5.4:-66922804 | None:intergenic |
| GTCTTCTCAAGAAATCATGT+TGG | 0.603751 | 5.4:+66922390 | MS.gene90610:CDS |
| AACAAGGAGAGAAAGAGCAC+TGG | 0.604548 | 5.4:+66924530 | MS.gene90610:CDS |
| CTAGGAGAACTGTGTCTAGG+AGG | 0.606464 | 5.4:+66925073 | MS.gene90610:CDS |
| GAGTTGGCTCGAAAGGTGGA+TGG | 0.611180 | 5.4:+66924810 | MS.gene90610:CDS |
| TTACAGGTAAGCATGAAAGA+TGG | 0.615493 | 5.4:+66925806 | MS.gene90610:intron |
| GAATAGTTATCAAATTGAAG+TGG | 0.618381 | 5.4:-66924985 | None:intergenic |
| GCTGGAGTTGGCTCGAAAGG+TGG | 0.621737 | 5.4:+66924806 | MS.gene90610:CDS |
| ACAGAATGGAAGCAGCAACA+AGG | 0.622814 | 5.4:+66924514 | MS.gene90610:CDS |
| TCAGTTAAATCATACTTGTG+TGG | 0.635037 | 5.4:+66922763 | MS.gene90610:CDS |
| CGTCAGTTGAAGTACAAACA+GGG | 0.665346 | 5.4:+66923871 | MS.gene90610:CDS |
| AGATTCTTAGATGCTTCTGG+TGG | 0.671963 | 5.4:+66924928 | MS.gene90610:CDS |
| ACTAGCAAAACATAACAACA+TGG | 0.703514 | 5.4:+66924771 | MS.gene90610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATATTTATAATA+TGG | - | chr5.4:66925781-66925800 | None:intergenic | 0.0% |
| !! | ATTATTATTAAATAAGAGAT+TGG | + | chr5.4:66924164-66924183 | MS.gene90610:intron | 10.0% |
| !! | TTAATATTGAAAAAGATTGA+AGG | - | chr5.4:66923602-66923621 | None:intergenic | 15.0% |
| !! | TTATATTTATAATATGGTAG+TGG | - | chr5.4:66925775-66925794 | None:intergenic | 15.0% |
| !!! | AAATATTTTTAAAGATCCAA+TGG | + | chr5.4:66923251-66923270 | MS.gene90610:intron | 15.0% |
| !!! | AATACTAATTTTTTTATGCA+TGG | - | chr5.4:66923712-66923731 | None:intergenic | 15.0% |
| !!! | CATAATTTTTTGTAATATCA+CGG | + | chr5.4:66923434-66923453 | MS.gene90610:intron | 15.0% |
| !!! | TAATAACATTGAAATTTTTC+AGG | + | chr5.4:66924437-66924456 | MS.gene90610:intron | 15.0% |
| !!! | TATAATTTTTATGTTGTTAC+AGG | + | chr5.4:66925790-66925809 | MS.gene90610:intron | 15.0% |
| !!! | TATCATTTATATGACTTTTA+TGG | + | chr5.4:66923211-66923230 | MS.gene90610:intron | 15.0% |
| !! | AAAAAAAAATCTTGATGTCA+TGG | + | chr5.4:66925520-66925539 | MS.gene90610:intron | 20.0% |
| !! | ATGGAAATGGAAAAAATAAA+GGG | - | chr5.4:66923579-66923598 | None:intergenic | 20.0% |
| !! | CGTGATATTACAAAAAATTA+TGG | - | chr5.4:66923436-66923455 | None:intergenic | 20.0% |
| !! | TTAATTTATGTGTCAAAACT+TGG | + | chr5.4:66924363-66924382 | MS.gene90610:intron | 20.0% |
| !! | TTCATAGTGTAATATAAACA+AGG | + | chr5.4:66925415-66925434 | MS.gene90610:intron | 20.0% |
| !!! | AATCTATTTTTGAAACCTTT+TGG | - | chr5.4:66923138-66923157 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTAAAGTATGTTC+TGG | - | chr5.4:66924142-66924161 | None:intergenic | 20.0% |
| !!! | TAAATGATAGTAATTTGTGA+TGG | - | chr5.4:66923200-66923219 | None:intergenic | 20.0% |
| !!! | TGACAATGTAAAATGTTTTA+AGG | - | chr5.4:66923175-66923194 | None:intergenic | 20.0% |
| ! | AAATATGTAAAGAAGATGCT+TGG | + | chr5.4:66924224-66924243 | MS.gene90610:intron | 25.0% |
| ! | ACAATGAATGAGAACATAAT+TGG | - | chr5.4:66922653-66922672 | None:intergenic | 25.0% |
| ! | AGTTTGACATAGTAAATTCA+AGG | + | chr5.4:66924668-66924687 | MS.gene90610:intron | 25.0% |
| ! | ATCAGAAAATAATAGAAGAG+TGG | + | chr5.4:66924197-66924216 | MS.gene90610:intron | 25.0% |
| ! | ATTTCATGATGAACATACAA+AGG | + | chr5.4:66925116-66925135 | MS.gene90610:CDS | 25.0% |
| ! | CATTAATTGGTTACTTCAAT+TGG | + | chr5.4:66923026-66923045 | MS.gene90610:intron | 25.0% |
| ! | GAATAGTTATCAAATTGAAG+TGG | - | chr5.4:66924988-66925007 | None:intergenic | 25.0% |
| ! | GATGGAAATGGAAAAAATAA+AGG | - | chr5.4:66923580-66923599 | None:intergenic | 25.0% |
| ! | GTTTGACATAGTAAATTCAA+GGG | + | chr5.4:66924669-66924688 | MS.gene90610:intron | 25.0% |
| ! | TATTGAAAAAGATTGAAGGA+TGG | - | chr5.4:66923598-66923617 | None:intergenic | 25.0% |
| ! | TCAGAAAGAATTATCAGTTA+AGG | + | chr5.4:66924110-66924129 | MS.gene90610:intron | 25.0% |
| ! | TGAGTTCACTAATCATTAAT+TGG | + | chr5.4:66923013-66923032 | MS.gene90610:intron | 25.0% |
| ! | TGATGTTATAGCTAAAATTG+CGG | + | chr5.4:66922563-66922582 | MS.gene90610:intron | 25.0% |
| ! | TGGAAATGGAAAAAATAAAG+GGG | - | chr5.4:66923578-66923597 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATTCAATGATT+TGG | - | chr5.4:66922953-66922972 | None:intergenic | 25.0% |
| ! | TTGAATGTAACTAAATGTGT+TGG | - | chr5.4:66925331-66925350 | None:intergenic | 25.0% |
| ! | TTTAAATGAGAAAACTTCAG+TGG | - | chr5.4:66923901-66923920 | None:intergenic | 25.0% |
| !! | AAACTTTAAAGGTAAACTCA+TGG | - | chr5.4:66923105-66923124 | None:intergenic | 25.0% |
| !! | AATGATTTGGAGTTTGAATT+TGG | - | chr5.4:66922940-66922959 | None:intergenic | 25.0% |
| !! | ACTGAAGTTTTCTCATTTAA+AGG | + | chr5.4:66923900-66923919 | MS.gene90610:CDS | 25.0% |
| !! | GATCTATTTAAAACTAGTTG+AGG | - | chr5.4:66925191-66925210 | None:intergenic | 25.0% |
| !! | TCATCATGAAATTGATAACT+TGG | - | chr5.4:66925108-66925127 | None:intergenic | 25.0% |
| !! | TGATATCCATCTTCTATTTT+CGG | - | chr5.4:66922746-66922765 | None:intergenic | 25.0% |
| !!! | AATTTGAACCAACTTTTTCT+TGG | - | chr5.4:66923081-66923100 | None:intergenic | 25.0% |
| !!! | CAAAGACTAATTTTAAAGCT+AGG | + | chr5.4:66925055-66925074 | MS.gene90610:CDS | 25.0% |
| !!! | CACAGTTTAAAACCTTTTTA+TGG | + | chr5.4:66923463-66923482 | MS.gene90610:intron | 25.0% |
| !!! | CATAAAAAGGTTTTAAACTG+TGG | - | chr5.4:66923465-66923484 | None:intergenic | 25.0% |
| !!! | CATTGATTTAGTCTCTAAAA+CGG | + | chr5.4:66924618-66924637 | MS.gene90610:intron | 25.0% |
| !!! | TGAAATTTTTCAGGATGATT+GGG | + | chr5.4:66924446-66924465 | MS.gene90610:intron | 25.0% |
| !!! | TTAAAATTAGTCTTTGTTGC+TGG | - | chr5.4:66925051-66925070 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTTCAGGATGAT+TGG | + | chr5.4:66924445-66924464 | MS.gene90610:intron | 25.0% |
| AAAAGATTGAAGGATGGAAA+TGG | - | chr5.4:66923592-66923611 | None:intergenic | 30.0% | |
| AACTAGAGCAATAAAGCAAA+AGG | + | chr5.4:66923965-66923984 | MS.gene90610:CDS | 30.0% | |
| AATGTAACTAAATGTGTTGG+TGG | - | chr5.4:66925328-66925347 | None:intergenic | 30.0% | |
| ACACATTGATCTCCATAAAA+AGG | - | chr5.4:66923478-66923497 | None:intergenic | 30.0% | |
| ACTAGCAAAACATAACAACA+TGG | + | chr5.4:66924771-66924790 | MS.gene90610:CDS | 30.0% | |
| ACTCAACAAATCTTCTTGTA+TGG | - | chr5.4:66922863-66922882 | None:intergenic | 30.0% | |
| AGAGAAGCAATACTAATTGA+GGG | - | chr5.4:66922438-66922457 | None:intergenic | 30.0% | |
| ATCAGCATATAGAAGTTTCA+AGG | + | chr5.4:66922990-66923009 | MS.gene90610:CDS | 30.0% | |
| ATTCTTCCGAAAATAGAAGA+TGG | + | chr5.4:66922737-66922756 | MS.gene90610:CDS | 30.0% | |
| CAAAATATCTTATGTCGTTG+TGG | - | chr5.4:66922545-66922564 | None:intergenic | 30.0% | |
| CATGCTAAATATTTCAGTTG+AGG | + | chr5.4:66923760-66923779 | MS.gene90610:intron | 30.0% | |
| CTTAATATCCTTGTTAGCAT+TGG | - | chr5.4:66925837-66925856 | None:intergenic | 30.0% | |
| CTTGCAATAACTATGTCATT+AGG | - | chr5.4:66925701-66925720 | None:intergenic | 30.0% | |
| GGACGAAGTATAATATATGA+CGG | + | chr5.4:66924384-66924403 | MS.gene90610:intron | 30.0% | |
| GTAGCAATGTTTCAAAAATG+AGG | + | chr5.4:66924484-66924503 | MS.gene90610:CDS | 30.0% | |
| TCAGTTAAATCATACTTGTG+TGG | + | chr5.4:66922763-66922782 | MS.gene90610:CDS | 30.0% | |
| TGTCAATCAATCATAACCAT+TGG | - | chr5.4:66923270-66923289 | None:intergenic | 30.0% | |
| ! | GAAGTATAATATATGACGGA+GGG | + | chr5.4:66924388-66924407 | MS.gene90610:intron | 30.0% |
| ! | TATTGTGTTAGTGTCTTGTT+CGG | + | chr5.4:66925371-66925390 | MS.gene90610:intron | 30.0% |
| ! | TGAGGAAACAATTTTCAACT+TGG | - | chr5.4:66925173-66925192 | None:intergenic | 30.0% |
| !! | GAAGATTTGTTGAGTGATAA+AGG | + | chr5.4:66922868-66922887 | MS.gene90610:CDS | 30.0% |
| !! | TCACTCATTGTAAGTTTTGA+GGG | - | chr5.4:66925915-66925934 | None:intergenic | 30.0% |
| !!! | CTTGAATTTTAAAACACTGC+TGG | - | chr5.4:66924255-66924274 | None:intergenic | 30.0% |
| !!! | GTAAAATGTTTTAAGGTGCA+TGG | - | chr5.4:66923168-66923187 | None:intergenic | 30.0% |
| AACAAAATATGAGCTGGAGT+TGG | + | chr5.4:66924794-66924813 | MS.gene90610:CDS | 35.0% | |
| AAGATTATAACTGTGACGTC+AGG | + | chr5.4:66923336-66923355 | MS.gene90610:intron | 35.0% | |
| AAGCAAGATATAAGCAAGAC+AGG | + | chr5.4:66925866-66925885 | MS.gene90610:CDS | 35.0% | |
| AAGTCCAGACAGAAAATCTA+TGG | + | chr5.4:66923845-66923864 | MS.gene90610:CDS | 35.0% | |
| AATTCAAATTCCCTCGAGAA+CGG | + | chr5.4:66924696-66924715 | MS.gene90610:intron | 35.0% | |
| ACAAGATTCTTAGATGCTTC+TGG | + | chr5.4:66924925-66924944 | MS.gene90610:CDS | 35.0% | |
| ACATGGAACAAAATATGAGC+TGG | + | chr5.4:66924788-66924807 | MS.gene90610:CDS | 35.0% | |
| ACATTGTTGACAACTTGACA+TGG | - | chr5.4:66923409-66923428 | None:intergenic | 35.0% | |
| ACCTCATTCCAAGAAAAAGT+TGG | + | chr5.4:66923070-66923089 | MS.gene90610:intron | 35.0% | |
| AGATTATAACTGTGACGTCA+GGG | + | chr5.4:66923337-66923356 | MS.gene90610:intron | 35.0% | |
| CGAAGTATAATATATGACGG+AGG | + | chr5.4:66924387-66924406 | MS.gene90610:intron | 35.0% | |
| GACATAGTAAATTCAAGGGA+TGG | + | chr5.4:66924673-66924692 | MS.gene90610:intron | 35.0% | |
| GAGAGAAGCAATACTAATTG+AGG | - | chr5.4:66922439-66922458 | None:intergenic | 35.0% | |
| GAGATCATAAGCTCAGAAAA+TGG | + | chr5.4:66923795-66923814 | MS.gene90610:CDS | 35.0% | |
| GCATCACAAGCAAACTTTAA+AGG | - | chr5.4:66923116-66923135 | None:intergenic | 35.0% | |
| GTCTTCTCAAGAAATCATGT+TGG | + | chr5.4:66922390-66922409 | MS.gene90610:CDS | 35.0% | |
| GTCTTGCTTATATCTTGCTT+TGG | - | chr5.4:66925866-66925885 | None:intergenic | 35.0% | |
| TATTGATGTGACCACAATTG+TGG | + | chr5.4:66925475-66925494 | MS.gene90610:intron | 35.0% | |
| TGACATATACTAGCAAGAGA+AGG | - | chr5.4:66925751-66925770 | None:intergenic | 35.0% | |
| TTACAGGTAAGCATGAAAGA+TGG | + | chr5.4:66925806-66925825 | MS.gene90610:intron | 35.0% | |
| ! | AATATAAGAGCACATGGACT+TGG | - | chr5.4:66925728-66925747 | None:intergenic | 35.0% |
| ! | AGAAGGAATATAAGAGCACA+TGG | - | chr5.4:66925734-66925753 | None:intergenic | 35.0% |
| ! | TATTTTACAACCGTTCTCGA+GGG | - | chr5.4:66924709-66924728 | None:intergenic | 35.0% |
| ! | TTCAAGTGTGATGATGATGT+TGG | + | chr5.4:66924269-66924288 | MS.gene90610:intron | 35.0% |
| ! | TTTACAACAGTTTTCAGCAC+AGG | + | chr5.4:66923937-66923956 | MS.gene90610:CDS | 35.0% |
| !! | ACCAACTTTTTCTTGGAATG+AGG | - | chr5.4:66923074-66923093 | None:intergenic | 35.0% |
| !! | CTCGACTGTTGATTTGAAAT+CGG | + | chr5.4:66925658-66925677 | MS.gene90610:intron | 35.0% |
| AAATCTTGATGTCATGGACC+TGG | + | chr5.4:66925526-66925545 | MS.gene90610:intron | 40.0% | |
| AAGCTGAATCTTCTTCTGCA+AGG | - | chr5.4:66922807-66922826 | None:intergenic | 40.0% | |
| AATGAGGATGCAAGACAGAA+TGG | + | chr5.4:66924500-66924519 | MS.gene90610:CDS | 40.0% | |
| ACGTCAGTTGAAGTACAAAC+AGG | + | chr5.4:66923870-66923889 | MS.gene90610:CDS | 40.0% | |
| AGATTCTTAGATGCTTCTGG+TGG | + | chr5.4:66924928-66924947 | MS.gene90610:CDS | 40.0% | |
| CATATTTGACTGCGATTCTC+AGG | - | chr5.4:66922494-66922513 | None:intergenic | 40.0% | |
| CGTCAGTTGAAGTACAAACA+GGG | + | chr5.4:66923871-66923890 | MS.gene90610:CDS | 40.0% | |
| GGTGAAGAAAAAGAGAGTTG+TGG | + | chr5.4:66924949-66924968 | MS.gene90610:CDS | 40.0% | |
| TATAGCTAAAATTGCGGTCG+CGG | + | chr5.4:66922569-66922588 | MS.gene90610:intron | 40.0% | |
| TATGGAGATCAATGTGTGTG+TGG | + | chr5.4:66923481-66923500 | MS.gene90610:intron | 40.0% | |
| TCACGAAATAACCACAATCG+TGG | - | chr5.4:66925448-66925467 | None:intergenic | 40.0% | |
| TTTCATACTGCTTCATCGCA+TGG | - | chr5.4:66924870-66924889 | None:intergenic | 40.0% | |
| ! | AGTTTGCTTGTGATGCCAAA+AGG | + | chr5.4:66923120-66923139 | MS.gene90610:intron | 40.0% |
| ! | GTAGCCATAGATTTTCTGTC+TGG | - | chr5.4:66923852-66923871 | None:intergenic | 40.0% |
| ! | GTATTTTACAACCGTTCTCG+AGG | - | chr5.4:66924710-66924729 | None:intergenic | 40.0% |
| !! | AGTCTCTAAAACGGTTCATG+AGG | + | chr5.4:66924627-66924646 | MS.gene90610:intron | 40.0% |
| AAGCTAGGAGAACTGTGTCT+AGG | + | chr5.4:66925070-66925089 | MS.gene90610:CDS | 45.0% | |
| AAGGTTGTAGACCACGATTG+TGG | + | chr5.4:66925434-66925453 | MS.gene90610:intron | 45.0% | |
| ACAGAATGGAAGCAGCAACA+AGG | + | chr5.4:66924514-66924533 | MS.gene90610:CDS | 45.0% | |
| CCACAACATGACCACAATTG+TGG | - | chr5.4:66925489-66925508 | None:intergenic | 45.0% | |
| CCACAATTGTGGTCATGTTG+TGG | + | chr5.4:66925486-66925505 | MS.gene90610:intron | 45.0% | |
| GGCTTATGCTTTCTCACAAC+AGG | + | chr5.4:66924551-66924570 | MS.gene90610:CDS | 45.0% | |
| GTTCCAATTGCAAGCAATCC+AGG | - | chr5.4:66925547-66925566 | None:intergenic | 45.0% | |
| TATTCGCAGCTGCAACAATG+AGG | - | chr5.4:66924737-66924756 | None:intergenic | 45.0% | |
| TGGCTCAACCAATGCTAACA+AGG | + | chr5.4:66925826-66925845 | MS.gene90610:CDS | 45.0% | |
| ! | AACAAGGAGAGAAAGAGCAC+TGG | + | chr5.4:66924530-66924549 | MS.gene90610:CDS | 45.0% |
| !! | AATTATTATAAAATAAAACT+TGG | + | chr5.4:66924044-66924063 | MS.gene90610:intron | 5.0% |
| CTAGGAGAACTGTGTCTAGG+AGG | + | chr5.4:66925073-66925092 | MS.gene90610:CDS | 50.0% | |
| GGACCTGGATTGCTTGCAAT+TGG | + | chr5.4:66925541-66925560 | MS.gene90610:intron | 50.0% | |
| TCGAAAGGTGGATGGCAACT+CGG | + | chr5.4:66924818-66924837 | MS.gene90610:CDS | 50.0% | |
| CACACGTAGTCACACTCACG+TGG | - | chr5.4:66925305-66925324 | None:intergenic | 55.0% | |
| ! | GACGGAGGGAGTGTGACATA+AGG | + | chr5.4:66924402-66924421 | MS.gene90610:intron | 55.0% |
| !! | GAGTTGGCTCGAAAGGTGGA+TGG | + | chr5.4:66924810-66924829 | MS.gene90610:CDS | 55.0% |
| !! | TGAGCTGGAGTTGGCTCGAA+AGG | + | chr5.4:66924803-66924822 | MS.gene90610:CDS | 55.0% |
| TGTAACGCGCTAGCGCGTTG+AGG | + | chr5.4:66922519-66922538 | MS.gene90610:intron | 60.0% | |
| !! | GCTGGAGTTGGCTCGAAAGG+TGG | + | chr5.4:66924806-66924825 | MS.gene90610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66922360 | 66925934 | 66922360 | ID=MS.gene90610 |
| chr5.4 | mRNA | 66922360 | 66925934 | 66922360 | ID=MS.gene90610.t1;Parent=MS.gene90610 |
| chr5.4 | exon | 66922360 | 66922428 | 66922360 | ID=MS.gene90610.t1.exon1;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66922360 | 66922428 | 66922360 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| chr5.4 | exon | 66922724 | 66923011 | 66922724 | ID=MS.gene90610.t1.exon2;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66922724 | 66923011 | 66922724 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| chr5.4 | exon | 66923777 | 66923986 | 66923777 | ID=MS.gene90610.t1.exon3;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66923777 | 66923986 | 66923777 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| chr5.4 | exon | 66924459 | 66924572 | 66924459 | ID=MS.gene90610.t1.exon4;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66924459 | 66924572 | 66924459 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| chr5.4 | exon | 66924748 | 66925137 | 66924748 | ID=MS.gene90610.t1.exon5;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66924748 | 66925137 | 66924748 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| chr5.4 | exon | 66925812 | 66925934 | 66925812 | ID=MS.gene90610.t1.exon6;Parent=MS.gene90610.t1 |
| chr5.4 | CDS | 66925812 | 66925934 | 66925812 | ID=cds.MS.gene90610.t1;Parent=MS.gene90610.t1 |
| Gene Sequence |
| Protein sequence |
