Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90856.t1 | XP_013470441.1 | 69.5 | 501 | 43 | 3 | 1 | 402 | 1 | 490 | 6.40E-119 | 437.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90856.t1 | Q7XTT4 | 28.7 | 181 | 114 | 4 | 123 | 289 | 451 | 630 | 4.8e-14 | 80.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90856.t1 | A0A072VR57 | 69.5 | 501 | 43 | 3 | 1 | 402 | 1 | 490 | 4.6e-119 | 437.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90856 | 0.829818 | 4.16E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene90856 | 0.845065 | 5.12E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene90856 | 0.816674 | 4.90E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene90856 | 0.821114 | 4.79E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene90856 | 0.81782 | 2.70E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene90856 | 0.818779 | 1.64E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene90856 | 0.846638 | 1.91E-59 | -1.69E-46 |
| MS.gene050759 | MS.gene90856 | 0.819353 | 1.21E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene90856 | 0.803493 | 3.40E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene90856 | 0.819058 | 1.42E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene90856 | 0.807604 | 4.66E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene90856 | 0.827854 | 1.24E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene90856 | 0.833218 | 6.05E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene90856 | 0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene90856 | 0.831689 | 1.45E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene90856 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene90856 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene052459 | MS.gene90856 | 0.804117 | 2.52E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene90856 | 0.822496 | 2.30E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene90856 | 0.807485 | 4.94E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene90856 | 0.818662 | 1.74E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene90856 | 0.831161 | 1.95E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene90856 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene90856 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene90856 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene90856 | 0.814403 | 1.57E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene90856 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene90856 | 0.850064 | 2.16E-60 | -1.69E-46 |
| MS.gene055222 | MS.gene90856 | 0.817946 | 2.53E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene90856 | 0.821249 | 4.46E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene90856 | 0.812855 | 3.44E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene90856 | 0.832088 | 1.15E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene90856 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene90856 | 0.809345 | 1.98E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene90856 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene90856 | 0.832937 | 7.11E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene90856 | 0.828923 | 6.86E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene90856 | 0.811819 | 5.78E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene90856 | 0.82686 | 2.15E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene90856 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene90856 | 0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene90856 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene90856 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene90856 | 0.844802 | 6.03E-59 | -1.69E-46 |
| MS.gene05978 | MS.gene90856 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene90856 | 0.867771 | 1.07E-65 | -1.69E-46 |
| MS.gene060296 | MS.gene90856 | 0.818395 | 2.00E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene90856 | 0.818671 | 1.74E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene90856 | 0.811534 | 6.67E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene90856 | 0.860248 | 2.36E-63 | -1.69E-46 |
| MS.gene060935 | MS.gene90856 | 0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene90856 | 0.805861 | 1.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90856.t1 | MTR_1g115375 | 93.827 | 324 | 7 | 2 | 80 | 402 | 179 | 490 | 0.0 | 624 |
| MS.gene90856.t1 | MTR_1g115375 | 86.250 | 80 | 10 | 1 | 1 | 79 | 1 | 80 | 2.30e-26 | 110 |
| MS.gene90856.t1 | MTR_4g104470 | 28.161 | 174 | 113 | 6 | 122 | 287 | 123 | 292 | 2.73e-15 | 76.3 |
| MS.gene90856.t1 | MTR_1g045510 | 30.636 | 173 | 115 | 4 | 118 | 287 | 110 | 280 | 1.88e-14 | 73.6 |
| MS.gene90856.t1 | MTR_4g074930 | 25.248 | 202 | 131 | 6 | 106 | 291 | 315 | 512 | 1.68e-13 | 72.4 |
| MS.gene90856.t1 | MTR_4g074930 | 25.248 | 202 | 131 | 6 | 106 | 291 | 327 | 524 | 1.72e-13 | 72.4 |
| MS.gene90856.t1 | MTR_4g074930 | 25.248 | 202 | 131 | 6 | 106 | 291 | 350 | 547 | 1.77e-13 | 72.4 |
| MS.gene90856.t1 | MTR_4g074930 | 25.248 | 202 | 131 | 6 | 106 | 291 | 362 | 559 | 1.82e-13 | 72.4 |
| MS.gene90856.t1 | MTR_3g075500 | 29.213 | 178 | 109 | 6 | 122 | 287 | 110 | 282 | 3.79e-13 | 69.7 |
| MS.gene90856.t1 | MTR_7g106440 | 25.137 | 183 | 124 | 5 | 118 | 287 | 106 | 288 | 1.03e-12 | 68.9 |
| MS.gene90856.t1 | MTR_2g022950 | 27.225 | 191 | 131 | 5 | 116 | 300 | 55 | 243 | 1.57e-12 | 67.8 |
| MS.gene90856.t1 | MTR_1g056520 | 26.923 | 182 | 123 | 7 | 122 | 294 | 109 | 289 | 3.27e-12 | 67.4 |
| MS.gene90856.t1 | MTR_3g080130 | 39.744 | 78 | 45 | 2 | 213 | 288 | 36 | 113 | 2.49e-11 | 61.6 |
| MS.gene90856.t1 | MTR_3g095230 | 23.164 | 177 | 124 | 3 | 123 | 287 | 217 | 393 | 4.18e-11 | 65.1 |
| MS.gene90856.t1 | MTR_2g022950 | 27.225 | 191 | 131 | 5 | 116 | 300 | 55 | 243 | 4.37e-11 | 63.5 |
| MS.gene90856.t1 | MTR_3g095230 | 23.164 | 177 | 124 | 3 | 123 | 287 | 217 | 393 | 4.75e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90856.t1 | AT1G60000 | 29.651 | 172 | 117 | 4 | 119 | 287 | 83 | 253 | 6.36e-14 | 71.6 |
| MS.gene90856.t1 | AT3G18610 | 26.178 | 191 | 128 | 5 | 110 | 291 | 314 | 500 | 8.64e-14 | 73.6 |
| MS.gene90856.t1 | AT3G18610 | 26.178 | 191 | 128 | 5 | 110 | 291 | 374 | 560 | 9.95e-14 | 73.2 |
| MS.gene90856.t1 | AT4G24770 | 28.655 | 171 | 116 | 5 | 122 | 287 | 151 | 320 | 1.06e-13 | 72.0 |
| MS.gene90856.t1 | AT4G24770 | 28.655 | 171 | 116 | 5 | 122 | 287 | 151 | 320 | 1.06e-13 | 72.0 |
| MS.gene90856.t1 | AT3G18610 | 26.178 | 191 | 128 | 5 | 110 | 291 | 344 | 530 | 1.11e-13 | 73.2 |
| MS.gene90856.t1 | AT5G50250 | 28.070 | 171 | 117 | 5 | 122 | 287 | 114 | 283 | 1.32e-13 | 71.2 |
| MS.gene90856.t1 | AT1G01080 | 27.647 | 170 | 110 | 4 | 122 | 278 | 109 | 278 | 3.09e-12 | 67.0 |
| MS.gene90856.t1 | AT1G01080 | 26.705 | 176 | 116 | 4 | 122 | 284 | 109 | 284 | 7.89e-12 | 65.9 |
| MS.gene90856.t1 | AT2G16940 | 26.064 | 188 | 125 | 5 | 123 | 297 | 184 | 370 | 2.25e-11 | 65.9 |
| MS.gene90856.t1 | AT1G01080 | 26.554 | 177 | 116 | 5 | 122 | 284 | 109 | 285 | 4.59e-11 | 63.9 |
| MS.gene90856.t1 | AT2G37220 | 25.521 | 192 | 114 | 6 | 122 | 287 | 92 | 280 | 7.04e-11 | 63.2 |
| MS.gene90856.t1 | AT2G16940 | 26.064 | 188 | 125 | 5 | 123 | 297 | 233 | 419 | 7.26e-11 | 64.3 |
| MS.gene90856.t1 | AT2G16940 | 26.064 | 188 | 125 | 5 | 123 | 297 | 43 | 229 | 7.73e-11 | 63.9 |
| MS.gene90856.t1 | AT2G16940 | 26.064 | 188 | 125 | 5 | 123 | 297 | 43 | 229 | 7.73e-11 | 63.9 |
Find 88 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATCCCTCCTTCATTTC+TGG | 0.108973 | 1.4:+87537933 | None:intergenic |
| ATCATTCTCCTCTGCAATTT+TGG | 0.128702 | 1.4:+87539945 | None:intergenic |
| CCTCACCTTAAAACTAATTA+TGG | 0.226944 | 1.4:+87538417 | None:intergenic |
| ATTCAGCGTTAATCTGGTTT+AGG | 0.239346 | 1.4:+87540451 | None:intergenic |
| GAAGCAGCTATTTGTGGGTT+TGG | 0.284241 | 1.4:+87537375 | None:intergenic |
| TTCCTGACACTGGCAAGTTT+AGG | 0.286520 | 1.4:-87538447 | MS.gene90856:CDS |
| TCCTGACACTGGCAAGTTTA+GGG | 0.287968 | 1.4:-87538446 | MS.gene90856:CDS |
| TTCAGCGTTAATCTGGTTTA+GGG | 0.321694 | 1.4:+87540452 | None:intergenic |
| AAGCAGCTATTTGTGGGTTT+GGG | 0.330204 | 1.4:+87537376 | None:intergenic |
| CCTTCATTTCTGGAGTAAAT+CGG | 0.343732 | 1.4:+87537943 | None:intergenic |
| TTTGGTTCCATCATCTTCAT+TGG | 0.353266 | 1.4:+87540308 | None:intergenic |
| GATTAGATTCAGCGTTAATC+TGG | 0.363787 | 1.4:+87540445 | None:intergenic |
| TGCTACGGGTGTCGTCAAAA+AGG | 0.378482 | 1.4:-87537417 | MS.gene90856:CDS |
| GCAGGTTCCAAACCAGTTGC+AGG | 0.384369 | 1.4:-87537663 | MS.gene90856:CDS |
| TGTTCATGCAGTCAAGAAAA+TGG | 0.388079 | 1.4:-87538583 | MS.gene90856:intron |
| TTTAGAACCTGCAACTGGTT+TGG | 0.388692 | 1.4:+87537656 | None:intergenic |
| GTTGCAAAGGTCGAAGCTTT+CGG | 0.389760 | 1.4:+87540340 | None:intergenic |
| TTTCCACTTGCAACAGAACT+TGG | 0.391674 | 1.4:+87537456 | None:intergenic |
| AACAAAACTGCAGAGGAAAA+TGG | 0.393203 | 1.4:-87539973 | MS.gene90856:intron |
| GTCATCCTCACTTGAATAGT+AGG | 0.395730 | 1.4:+87538525 | None:intergenic |
| ATCAAGAGCCAATGCTCGTT+TGG | 0.407420 | 1.4:+87538108 | None:intergenic |
| CCCCTAAACTTGCCAGTGTC+AGG | 0.419850 | 1.4:+87538445 | None:intergenic |
| ACTGGTTTGGAACCTGCAAC+TGG | 0.424778 | 1.4:+87537669 | None:intergenic |
| CTTAGACAAAATGGGTTTGT+TGG | 0.429669 | 1.4:+87540374 | None:intergenic |
| AAACGAGCATTGGCTCTTGA+TGG | 0.432294 | 1.4:-87538106 | MS.gene90856:CDS |
| TCTTGTTTGGAAGGCCTGTC+AGG | 0.436677 | 1.4:-87537722 | MS.gene90856:CDS |
| CTTCATTTCTGGAGTAAATC+GGG | 0.442986 | 1.4:+87537944 | None:intergenic |
| TTGGACCAAAGTGTCTTGTT+TGG | 0.444576 | 1.4:-87537735 | MS.gene90856:CDS |
| AGAGAGTTTGAAGAAGAAGA+AGG | 0.458401 | 1.4:+87540420 | None:intergenic |
| CTTCTCAAATTGCAATGTAA+AGG | 0.461827 | 1.4:-87537853 | MS.gene90856:CDS |
| GTTGCTTGAGTTGCTTTACA+TGG | 0.466789 | 1.4:+87537966 | None:intergenic |
| CCTGGTTTAGAACCTGCAAC+TGG | 0.468577 | 1.4:+87537651 | None:intergenic |
| AATGCCACAATCTACGGTAT+TGG | 0.479144 | 1.4:-87539905 | MS.gene90856:CDS |
| CAGTAGAAGCAGCTATTTGT+GGG | 0.480573 | 1.4:+87537370 | None:intergenic |
| CTTGGTATGGACAAGGAAAC+GGG | 0.485470 | 1.4:-87537822 | MS.gene90856:CDS |
| GCAGTTGAGCAACCAGGTGC+AGG | 0.486239 | 1.4:-87537501 | MS.gene90856:CDS |
| ACTTGGTATGGACAAGGAAA+CGG | 0.498089 | 1.4:-87537823 | MS.gene90856:CDS |
| ACCAAAGTGTCTTGTTTGGA+AGG | 0.502106 | 1.4:-87537731 | MS.gene90856:CDS |
| AGCAGCGGCCAAACGAGCAT+TGG | 0.504558 | 1.4:-87538116 | MS.gene90856:CDS |
| GCTACGAAAGTTTATGTTGG+AGG | 0.506031 | 1.4:-87538553 | MS.gene90856:CDS |
| AACGAGGAAATTGGAAATGA+GGG | 0.508780 | 1.4:-87540285 | MS.gene90856:intron |
| ACTCAATCCAATGAAGATGA+TGG | 0.516122 | 1.4:-87540315 | MS.gene90856:CDS |
| CCGATTTACTCCAGAAATGA+AGG | 0.517469 | 1.4:-87537943 | MS.gene90856:CDS |
| AAACGAGGAAATTGGAAATG+AGG | 0.518572 | 1.4:-87540286 | MS.gene90856:CDS |
| AGAGGAAATGCCACAATCTA+CGG | 0.521392 | 1.4:-87539911 | MS.gene90856:CDS |
| GCCTTCCAAACAAGACACTT+TGG | 0.522248 | 1.4:+87537730 | None:intergenic |
| TTGGATTGAGTTTGTTGCAA+AGG | 0.528061 | 1.4:+87540327 | None:intergenic |
| CTTGTCCATACCAAGTCGTA+TGG | 0.528600 | 1.4:+87537830 | None:intergenic |
| AAAGGCCATACGACTTGGTA+TGG | 0.529863 | 1.4:-87537835 | MS.gene90856:CDS |
| GCAGTAGAAGCAGCTATTTG+TGG | 0.531101 | 1.4:+87537369 | None:intergenic |
| CATGCAATTAATTTCAGTGA+TGG | 0.534530 | 1.4:+87538474 | None:intergenic |
| GGATATAATAGAATATATGT+TGG | 0.535480 | 1.4:-87537918 | MS.gene90856:CDS |
| CCTGACACTGGCAAGTTTAG+GGG | 0.542201 | 1.4:-87538445 | MS.gene90856:CDS |
| GAGTTTGAAGAAGAAGAAGG+TGG | 0.543166 | 1.4:+87540423 | None:intergenic |
| GTTGCTACGAAAGTTTATGT+TGG | 0.543964 | 1.4:-87538556 | MS.gene90856:CDS |
| GAACTTGGTTGCTCAACAGT+TGG | 0.545048 | 1.4:+87537471 | None:intergenic |
| ACTGAAGACAGCACTTGCAT+TGG | 0.546883 | 1.4:-87537754 | MS.gene90856:CDS |
| AGACAAAATGGGTTTGTTGG+TGG | 0.554333 | 1.4:+87540377 | None:intergenic |
| GCAGGTTCTAAACCAGGTGC+AGG | 0.555413 | 1.4:-87537645 | MS.gene90856:CDS |
| CAACCAAGTTCTGTTGCAAG+TGG | 0.556840 | 1.4:-87537459 | MS.gene90856:CDS |
| ACCGCACAACTTATCCTGAC+AGG | 0.558651 | 1.4:+87537708 | None:intergenic |
| AACTGCAGAGGAAAATGGTA+AGG | 0.561255 | 1.4:-87539968 | MS.gene90856:intron |
| TCATCCTCACTTGAATAGTA+GGG | 0.561329 | 1.4:+87538526 | None:intergenic |
| TCATTTGCAGTTGAGCAACC+AGG | 0.564422 | 1.4:-87537507 | MS.gene90856:CDS |
| AATGTAAAGGCCATACGACT+TGG | 0.565382 | 1.4:-87537840 | MS.gene90856:CDS |
| CTGACACTGGCAAGTTTAGG+GGG | 0.568128 | 1.4:-87538444 | MS.gene90856:CDS |
| TATATGTTGGAAGTCTGTCA+TGG | 0.574488 | 1.4:-87537905 | MS.gene90856:CDS |
| AAATAACAGAGGAAGAACTA+AGG | 0.575629 | 1.4:-87537881 | MS.gene90856:CDS |
| AAGGAAACGGGAGAATTTCG+AGG | 0.577973 | 1.4:-87537810 | MS.gene90856:CDS |
| CCAGTTGCAGGTTCTAAACC+AGG | 0.578088 | 1.4:-87537651 | MS.gene90856:CDS |
| AGGAAGAATAGAATGTGCTA+CGG | 0.579726 | 1.4:-87537432 | MS.gene90856:CDS |
| GTTCTGTTGCAAGTGGAAAG+AGG | 0.588009 | 1.4:-87537452 | MS.gene90856:CDS |
| CTAACACTACTACCACTACA+AGG | 0.592037 | 1.4:-87539882 | MS.gene90856:intron |
| ATATGTTGGAAGTCTGTCAT+GGG | 0.601270 | 1.4:-87537904 | MS.gene90856:CDS |
| GGAAGAATAGAATGTGCTAC+GGG | 0.605374 | 1.4:-87537431 | MS.gene90856:CDS |
| GTTGAGCAACCAGGTGCAGG+AGG | 0.622181 | 1.4:-87537498 | MS.gene90856:CDS |
| ATAGATAAATCACCTTGTAG+TGG | 0.629770 | 1.4:+87539870 | None:intergenic |
| GAATGATTCTAATCATCAAG+AGG | 0.630329 | 1.4:-87539929 | MS.gene90856:CDS |
| TTAGCCAATACCGTAGATTG+TGG | 0.631628 | 1.4:+87539901 | None:intergenic |
| CATACGACTTGGTATGGACA+AGG | 0.655913 | 1.4:-87537829 | MS.gene90856:CDS |
| TTTACTCCAGAAATGAAGGA+GGG | 0.658643 | 1.4:-87537939 | MS.gene90856:CDS |
| GCCTGTCAGGATAAGTTGTG+CGG | 0.659328 | 1.4:-87537709 | MS.gene90856:CDS |
| ATTTACTCCAGAAATGAAGG+AGG | 0.660456 | 1.4:-87537940 | MS.gene90856:CDS |
| TGGTAAGGCCAAAATTGCAG+AGG | 0.668394 | 1.4:-87539953 | MS.gene90856:CDS |
| AGGAAACGGGAGAATTTCGA+GGG | 0.671275 | 1.4:-87537809 | MS.gene90856:CDS |
| AATTCCCTACTATTCAAGTG+AGG | 0.689712 | 1.4:-87538530 | MS.gene90856:CDS |
| TCTGTCATGGGAAATAACAG+AGG | 0.691463 | 1.4:-87537892 | MS.gene90856:CDS |
| CTTCCTGCAGACTGAAGCAG+CGG | 0.704303 | 1.4:-87538131 | MS.gene90856:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATCAATTAAAAAACT+GGG | + | chr1.4:87539251-87539270 | None:intergenic | 15.0% |
| !! | ATCAATATTAAGTATATGTT+TGG | + | chr1.4:87538309-87538328 | None:intergenic | 15.0% |
| !! | TAAAACATTTAATGTTAACA+GGG | - | chr1.4:87539851-87539870 | MS.gene90856:intron | 15.0% |
| !!! | ATTGATTTTGAATGAATTTA+TGG | - | chr1.4:87538147-87538166 | MS.gene90856:intron | 15.0% |
| !!! | ATTTTTATTTAATGTGTGTT+TGG | - | chr1.4:87538108-87538127 | MS.gene90856:CDS | 15.0% |
| !!! | TTTTTTTTTCTTACTTATGA+AGG | - | chr1.4:87538025-87538044 | MS.gene90856:intron | 15.0% |
| !! | AAAACATTTAATGTTAACAG+GGG | - | chr1.4:87539852-87539871 | MS.gene90856:intron | 20.0% |
| !! | AACAATAATAACAACAATCA+AGG | + | chr1.4:87539197-87539216 | None:intergenic | 20.0% |
| !! | AATTACTCTTTCAAAAAATG+TGG | - | chr1.4:87538924-87538943 | MS.gene90856:intron | 20.0% |
| !! | ACAATAATAACAACAATCAA+GGG | + | chr1.4:87539196-87539215 | None:intergenic | 20.0% |
| !! | CAATAATAGAATGATAAATG+AGG | - | chr1.4:87538408-87538427 | MS.gene90856:intron | 20.0% |
| !! | CAGATAATCAATTAAAAAAC+TGG | + | chr1.4:87539252-87539271 | None:intergenic | 20.0% |
| !! | GGATATAATAGAATATATGT+TGG | - | chr1.4:87539945-87539964 | MS.gene90856:CDS | 20.0% |
| !! | GTAAAACATTTAATGTTAAC+AGG | - | chr1.4:87539850-87539869 | MS.gene90856:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr1.4:87539147-87539166 | MS.gene90856:intron | 20.0% |
| !! | TGCAAAAAAATCAATGAAAA+AGG | - | chr1.4:87537823-87537842 | MS.gene90856:CDS | 20.0% |
| !!! | AATCAATGATACTTTAAAAG+TGG | - | chr1.4:87538281-87538300 | MS.gene90856:intron | 20.0% |
| !!! | CATTTTTAGCTTTATTTTGT+TGG | - | chr1.4:87539480-87539499 | MS.gene90856:intron | 20.0% |
| !!! | GTTTCAATTAAAGTTTTTCT+AGG | + | chr1.4:87539082-87539101 | None:intergenic | 20.0% |
| !!! | TTAATATTGATTTTGTGTGA+AGG | - | chr1.4:87538318-87538337 | MS.gene90856:intron | 20.0% |
| ! | AAATGTCTCAAACAATGTAA+TGG | - | chr1.4:87538081-87538100 | MS.gene90856:intron | 25.0% |
| ! | AAGAAGAAGAAGAATGAAAA+TGG | - | chr1.4:87537698-87537717 | MS.gene90856:CDS | 25.0% |
| ! | AATGATGATATTGTTGCTAA+TGG | - | chr1.4:87537782-87537801 | MS.gene90856:CDS | 25.0% |
| ! | AGATGAATCAATTGAAAAGA+AGG | - | chr1.4:87537652-87537671 | MS.gene90856:CDS | 25.0% |
| ! | ATGAAAATATTGTAGAGAGT+TGG | - | chr1.4:87538482-87538501 | MS.gene90856:CDS | 25.0% |
| ! | ATGATGATATTGTTGCTAAT+GGG | - | chr1.4:87537783-87537802 | MS.gene90856:CDS | 25.0% |
| ! | CATGTAGATTCTATATAGTA+AGG | - | chr1.4:87538573-87538592 | MS.gene90856:CDS | 25.0% |
| ! | CTATACTAGCAATACATTAT+AGG | - | chr1.4:87539584-87539603 | MS.gene90856:intron | 25.0% |
| ! | GAAAATAATATATGAACCGA+TGG | + | chr1.4:87539617-87539636 | None:intergenic | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | - | chr1.4:87539150-87539169 | MS.gene90856:intron | 25.0% |
| ! | TGAAAATATTGTAGAGAGTT+GGG | - | chr1.4:87538483-87538502 | MS.gene90856:CDS | 25.0% |
| ! | TGACTAAAATTCAATTGTAG+AGG | - | chr1.4:87538211-87538230 | MS.gene90856:intron | 25.0% |
| !! | CCAAAAATCGATTCTTATTA+TGG | - | chr1.4:87539673-87539692 | MS.gene90856:intron | 25.0% |
| !!! | AATCGATTTTTGGAATTGTA+AGG | + | chr1.4:87539666-87539685 | None:intergenic | 25.0% |
| !!! | CATAATTAGTTTTAAGGTGA+GGG | - | chr1.4:87539447-87539466 | MS.gene90856:intron | 25.0% |
| !!! | CCATAATAAGAATCGATTTT+TGG | + | chr1.4:87539676-87539695 | None:intergenic | 25.0% |
| !!! | GATTGCCATAATTAGTTTTA+AGG | - | chr1.4:87539441-87539460 | MS.gene90856:intron | 25.0% |
| AAATAACAGAGGAAGAACTA+AGG | - | chr1.4:87539982-87540001 | MS.gene90856:intron | 30.0% | |
| AAGAAATAGATGACATTGAG+AGG | - | chr1.4:87538661-87538680 | MS.gene90856:intron | 30.0% | |
| AGAAAAGATGGTAAGAAACT+CGG | - | chr1.4:87538520-87538539 | MS.gene90856:CDS | 30.0% | |
| AGAAATAGATGACATTGAGA+GGG | - | chr1.4:87538662-87538681 | MS.gene90856:intron | 30.0% | |
| ATAGATAAATCACCTTGTAG+TGG | + | chr1.4:87537996-87538015 | None:intergenic | 30.0% | |
| CATGCAATTAATTTCAGTGA+TGG | + | chr1.4:87539392-87539411 | None:intergenic | 30.0% | |
| CATTATAGGTCTATTTCCAT+CGG | - | chr1.4:87539598-87539617 | MS.gene90856:intron | 30.0% | |
| CCTCACCTTAAAACTAATTA+TGG | + | chr1.4:87539449-87539468 | None:intergenic | 30.0% | |
| CTTCTCAAATTGCAATGTAA+AGG | - | chr1.4:87540010-87540029 | MS.gene90856:intron | 30.0% | |
| GAAAATATTGTAGAGAGTTG+GGG | - | chr1.4:87538484-87538503 | MS.gene90856:CDS | 30.0% | |
| GAAAGAAGAAGAACAAAAAG+AGG | - | chr1.4:87537606-87537625 | MS.gene90856:CDS | 30.0% | |
| GAACAAAAAGAGGAAAATGA+AGG | - | chr1.4:87537616-87537635 | MS.gene90856:CDS | 30.0% | |
| GAACTCAAAAATTGTATTGG+AGG | - | chr1.4:87538792-87538811 | MS.gene90856:intron | 30.0% | |
| GAATGATTCTAATCATCAAG+AGG | - | chr1.4:87537934-87537953 | MS.gene90856:CDS | 30.0% | |
| TAATAACAACAATCAAGGGT+CGG | + | chr1.4:87539192-87539211 | None:intergenic | 30.0% | |
| TCAAAAATTGTATTGGAGGA+GGG | - | chr1.4:87538796-87538815 | MS.gene90856:intron | 30.0% | |
| TGATGATATTGTTGCTAATG+GGG | - | chr1.4:87537784-87537803 | MS.gene90856:CDS | 30.0% | |
| ! | AACTGCAAATGATTTTTCAC+CGG | + | chr1.4:87540348-87540367 | None:intergenic | 30.0% |
| ! | AATTTAAAACCCTCCTCATT+TGG | - | chr1.4:87538767-87538786 | MS.gene90856:intron | 30.0% |
| ! | ATTTAAAACCCTCCTCATTT+GGG | - | chr1.4:87538768-87538787 | MS.gene90856:intron | 30.0% |
| ! | ATTTCCAATTTCCTCGTTTT+TGG | + | chr1.4:87537576-87537595 | None:intergenic | 30.0% |
| ! | CTTACCATCTTTTCTACAAT+AGG | + | chr1.4:87538515-87538534 | None:intergenic | 30.0% |
| ! | TCTTTTTGTGCTTCCTTATA+TGG | - | chr1.4:87539534-87539553 | MS.gene90856:intron | 30.0% |
| !!! | CCATAATTAGTTTTAAGGTG+AGG | - | chr1.4:87539446-87539465 | MS.gene90856:intron | 30.0% |
| !!! | GACATTCACAGTTATTTTGA+AGG | - | chr1.4:87539358-87539377 | MS.gene90856:intron | 30.0% |
| AAACGAGGAAATTGGAAATG+AGG | - | chr1.4:87537577-87537596 | MS.gene90856:CDS | 35.0% | |
| AAAGAAGAACAAAACTGCAG+AGG | - | chr1.4:87537883-87537902 | MS.gene90856:CDS | 35.0% | |
| AACAAAACTGCAGAGGAAAA+TGG | - | chr1.4:87537890-87537909 | MS.gene90856:CDS | 35.0% | |
| AACGAGGAAATTGGAAATGA+GGG | - | chr1.4:87537578-87537597 | MS.gene90856:CDS | 35.0% | |
| AATGAAAATGGTGTGGCTAA+TGG | - | chr1.4:87537710-87537729 | MS.gene90856:CDS | 35.0% | |
| AATTCAAAACCCTCCTCATT+TGG | - | chr1.4:87538714-87538733 | MS.gene90856:intron | 35.0% | |
| AATTCCCTACTATTCAAGTG+AGG | - | chr1.4:87539333-87539352 | MS.gene90856:intron | 35.0% | |
| ACATTTAATGTTAACAGGGG+AGG | - | chr1.4:87539855-87539874 | MS.gene90856:intron | 35.0% | |
| ACTCAATCCAATGAAGATGA+TGG | - | chr1.4:87537548-87537567 | MS.gene90856:CDS | 35.0% | |
| AGAGAGTTTGAAGAAGAAGA+AGG | + | chr1.4:87537446-87537465 | None:intergenic | 35.0% | |
| AGAGATTAATGAGCTGGATA+GGG | - | chr1.4:87539121-87539140 | MS.gene90856:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr1.4:87538508-87538527 | MS.gene90856:CDS | 35.0% | |
| AGGAAGAATAGAATGTGCTA+CGG | - | chr1.4:87540431-87540450 | MS.gene90856:CDS | 35.0% | |
| AGGGGTTTGTAAAAAAAGGA+AGG | - | chr1.4:87538629-87538648 | MS.gene90856:intron | 35.0% | |
| ATATGTTGGAAGTCTGTCAT+GGG | - | chr1.4:87539959-87539978 | MS.gene90856:CDS | 35.0% | |
| ATGAAAATGGTGTGGCTAAT+GGG | - | chr1.4:87537711-87537730 | MS.gene90856:CDS | 35.0% | |
| ATTCAAAACCCTCCTCATTT+GGG | - | chr1.4:87538715-87538734 | MS.gene90856:intron | 35.0% | |
| ATTGATTGCAATGTTTCAGC+AGG | - | chr1.4:87539561-87539580 | MS.gene90856:intron | 35.0% | |
| ATTTACTCCAGAAATGAAGG+AGG | - | chr1.4:87539923-87539942 | MS.gene90856:CDS | 35.0% | |
| CAAGTTTGAATCAATTCTGG+AGG | - | chr1.4:87538255-87538274 | MS.gene90856:intron | 35.0% | |
| CTCAAAAATTGTATTGGAGG+AGG | - | chr1.4:87538795-87538814 | MS.gene90856:intron | 35.0% | |
| GAAATAGATGACATTGAGAG+GGG | - | chr1.4:87538663-87538682 | MS.gene90856:intron | 35.0% | |
| GAAATTGGAAATGAGGGTTT+CGG | - | chr1.4:87537584-87537603 | MS.gene90856:CDS | 35.0% | |
| GAAGAAGAATGAAAATGGTG+TGG | - | chr1.4:87537703-87537722 | MS.gene90856:CDS | 35.0% | |
| GATTAGATTCAGCGTTAATC+TGG | + | chr1.4:87537421-87537440 | None:intergenic | 35.0% | |
| GCAATCAATCCTACCATATA+AGG | + | chr1.4:87539550-87539569 | None:intergenic | 35.0% | |
| GGGGAACTCAAAAATTGTAT+TGG | - | chr1.4:87538789-87538808 | MS.gene90856:intron | 35.0% | |
| GTCTCAAACAATGTAATGGT+TGG | - | chr1.4:87538085-87538104 | MS.gene90856:intron | 35.0% | |
| GTTGCTACGAAAGTTTATGT+TGG | - | chr1.4:87539307-87539326 | MS.gene90856:intron | 35.0% | |
| TAGAGATTAATGAGCTGGAT+AGG | - | chr1.4:87539120-87539139 | MS.gene90856:intron | 35.0% | |
| TATATGTTGGAAGTCTGTCA+TGG | - | chr1.4:87539958-87539977 | MS.gene90856:CDS | 35.0% | |
| TCATCCTCACTTGAATAGTA+GGG | + | chr1.4:87539340-87539359 | None:intergenic | 35.0% | |
| TCATCTGATTTACTTCCCTT+AGG | + | chr1.4:87539028-87539047 | None:intergenic | 35.0% | |
| TGTTCATGCAGTCAAGAAAA+TGG | - | chr1.4:87539280-87539299 | MS.gene90856:intron | 35.0% | |
| TTATATCCCTCCTTCATTTC+TGG | + | chr1.4:87539933-87539952 | None:intergenic | 35.0% | |
| TTGAACAAAAAACCAGTTGC+AGG | - | chr1.4:87540182-87540201 | MS.gene90856:intron | 35.0% | |
| TTTACTCCAGAAATGAAGGA+GGG | - | chr1.4:87539924-87539943 | MS.gene90856:CDS | 35.0% | |
| TTTGTGCTTCCTTATATGGT+AGG | - | chr1.4:87539538-87539557 | MS.gene90856:intron | 35.0% | |
| ! | ATCATTCTCCTCTGCAATTT+TGG | + | chr1.4:87537921-87537940 | None:intergenic | 35.0% |
| ! | ATTCAGCGTTAATCTGGTTT+AGG | + | chr1.4:87537415-87537434 | None:intergenic | 35.0% |
| ! | CTTAGACAAAATGGGTTTGT+TGG | + | chr1.4:87537492-87537511 | None:intergenic | 35.0% |
| ! | TAATGGGGTTGTTGTTGTTA+AGG | - | chr1.4:87537799-87537818 | MS.gene90856:CDS | 35.0% |
| ! | TTCAGCGTTAATCTGGTTTA+GGG | + | chr1.4:87537414-87537433 | None:intergenic | 35.0% |
| ! | TTTAAAACCCTCCTCATTTG+GGG | - | chr1.4:87538769-87538788 | MS.gene90856:intron | 35.0% |
| ! | TTTGGTTCCATCATCTTCAT+TGG | + | chr1.4:87537558-87537577 | None:intergenic | 35.0% |
| ! | TTTTCGCGCTTAGACAAAAT+GGG | + | chr1.4:87537500-87537519 | None:intergenic | 35.0% |
| ! | TTTTTCGCGCTTAGACAAAA+TGG | + | chr1.4:87537501-87537520 | None:intergenic | 35.0% |
| !! | CCTTCATTTCTGGAGTAAAT+CGG | + | chr1.4:87539923-87539942 | None:intergenic | 35.0% |
| !! | CTTCATTTCTGGAGTAAATC+GGG | + | chr1.4:87539922-87539941 | None:intergenic | 35.0% |
| !! | TTAATGTGTGTTTGGTGCTA+TGG | - | chr1.4:87538116-87538135 | MS.gene90856:CDS | 35.0% |
| !! | TTGGATTGAGTTTGTTGCAA+AGG | + | chr1.4:87537539-87537558 | None:intergenic | 35.0% |
| !!! | GCAACTGGTTTTTTGTTCAA+AGG | + | chr1.4:87540182-87540201 | None:intergenic | 35.0% |
| AAACTCCCAAACAAAGCCTA+AGG | - | chr1.4:87539009-87539028 | MS.gene90856:intron | 40.0% | |
| AACTCCCAAACAAAGCCTAA+GGG | - | chr1.4:87539010-87539029 | MS.gene90856:intron | 40.0% | |
| AACTGCAGAGGAAAATGGTA+AGG | - | chr1.4:87537895-87537914 | MS.gene90856:CDS | 40.0% | |
| AAGCAGCTATTTGTGGGTTT+GGG | + | chr1.4:87540490-87540509 | None:intergenic | 40.0% | |
| AATGCCACAATCTACGGTAT+TGG | - | chr1.4:87537958-87537977 | MS.gene90856:CDS | 40.0% | |
| AATGTAAAGGCCATACGACT+TGG | - | chr1.4:87540023-87540042 | MS.gene90856:intron | 40.0% | |
| ACTTGGTATGGACAAGGAAA+CGG | - | chr1.4:87540040-87540059 | MS.gene90856:intron | 40.0% | |
| AGAGGAAATGCCACAATCTA+CGG | - | chr1.4:87537952-87537971 | MS.gene90856:CDS | 40.0% | |
| CAGTAGAAGCAGCTATTTGT+GGG | + | chr1.4:87540496-87540515 | None:intergenic | 40.0% | |
| CCGATTTACTCCAGAAATGA+AGG | - | chr1.4:87539920-87539939 | MS.gene90856:CDS | 40.0% | |
| CTAACACTACTACCACTACA+AGG | - | chr1.4:87537981-87538000 | MS.gene90856:CDS | 40.0% | |
| GAGACTAGAGATTAATGAGC+TGG | - | chr1.4:87539115-87539134 | MS.gene90856:intron | 40.0% | |
| GAGTTTGAAGAAGAAGAAGG+TGG | + | chr1.4:87537443-87537462 | None:intergenic | 40.0% | |
| GCGCAAGTTTGAATCAATTC+TGG | - | chr1.4:87538252-87538271 | MS.gene90856:intron | 40.0% | |
| GCTACGAAAGTTTATGTTGG+AGG | - | chr1.4:87539310-87539329 | MS.gene90856:intron | 40.0% | |
| GGAACCAAAAACGAGGAAAT+TGG | - | chr1.4:87537569-87537588 | MS.gene90856:CDS | 40.0% | |
| GGAAGAATAGAATGTGCTAC+GGG | - | chr1.4:87540432-87540451 | MS.gene90856:CDS | 40.0% | |
| GTCATCCTCACTTGAATAGT+AGG | + | chr1.4:87539341-87539360 | None:intergenic | 40.0% | |
| TCAGTTGCAGTTGAAAAACC+AGG | - | chr1.4:87540248-87540267 | MS.gene90856:intron | 40.0% | |
| TCAGTTGCTGGTGAAAAATC+AGG | - | chr1.4:87540320-87540339 | MS.gene90856:CDS | 40.0% | |
| TCTGTCATGGGAAATAACAG+AGG | - | chr1.4:87539971-87539990 | MS.gene90856:intron | 40.0% | |
| TGAAAATGGTGTGGCTAATG+GGG | - | chr1.4:87537712-87537731 | MS.gene90856:CDS | 40.0% | |
| TGATAAATGAGGATGTGCGT+TGG | - | chr1.4:87538419-87538438 | MS.gene90856:intron | 40.0% | |
| TTAAAACCCTCCTCATTTGG+GGG | - | chr1.4:87538770-87538789 | MS.gene90856:intron | 40.0% | |
| TTAGCCAATACCGTAGATTG+TGG | + | chr1.4:87537965-87537984 | None:intergenic | 40.0% | |
| TTCAAAACCCTCCTCATTTG+GGG | - | chr1.4:87538716-87538735 | MS.gene90856:intron | 40.0% | |
| TTTCCACTTGCAACAGAACT+TGG | + | chr1.4:87540410-87540429 | None:intergenic | 40.0% | |
| ! | AGTGATGATGATGTGGCTAA+TGG | - | chr1.4:87537746-87537765 | MS.gene90856:CDS | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | - | chr1.4:87538802-87538821 | MS.gene90856:intron | 40.0% |
| ! | GAAGAAGAGTGATGATGATG+TGG | - | chr1.4:87537739-87537758 | MS.gene90856:CDS | 40.0% |
| ! | GTGATGATGATGTGGCTAAT+GGG | - | chr1.4:87537747-87537766 | MS.gene90856:CDS | 40.0% |
| ! | GTTGCTTGAGTTGCTTTACA+TGG | + | chr1.4:87539900-87539919 | None:intergenic | 40.0% |
| ! | TGATGATGATGTGGCTAATG+GGG | - | chr1.4:87537748-87537767 | MS.gene90856:CDS | 40.0% |
| ! | TTGGACCAAAGTGTCTTGTT+TGG | - | chr1.4:87540128-87540147 | MS.gene90856:intron | 40.0% |
| ! | TTTAGAACCTGCAACTGGTT+TGG | + | chr1.4:87540210-87540229 | None:intergenic | 40.0% |
| !! | ACCAAAGTGTCTTGTTTGGA+AGG | - | chr1.4:87540132-87540151 | MS.gene90856:intron | 40.0% |
| !! | ACTTCCCTTAGGCTTTGTTT+GGG | + | chr1.4:87539017-87539036 | None:intergenic | 40.0% |
| !! | AGACAAAATGGGTTTGTTGG+TGG | + | chr1.4:87537489-87537508 | None:intergenic | 40.0% |
| !! | AGATGATGGAACCAAAAACG+AGG | - | chr1.4:87537562-87537581 | MS.gene90856:CDS | 40.0% |
| !! | ATTGATTTTTCACCTGCACC+TGG | + | chr1.4:87540269-87540288 | None:intergenic | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | - | chr1.4:87538591-87538610 | MS.gene90856:intron | 40.0% |
| !! | TACTTCCCTTAGGCTTTGTT+TGG | + | chr1.4:87539018-87539037 | None:intergenic | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr1.4:87539010-87539029 | None:intergenic | 40.0% |
| !!! | CACAGTTATTTTGAAGGCTG+TGG | - | chr1.4:87539364-87539383 | MS.gene90856:intron | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | + | chr1.4:87538783-87538802 | None:intergenic | 40.0% |
| AAGGAAACGGGAGAATTTCG+AGG | - | chr1.4:87540053-87540072 | MS.gene90856:intron | 45.0% | |
| ACTGAAGACAGCACTTGCAT+TGG | - | chr1.4:87540109-87540128 | MS.gene90856:intron | 45.0% | |
| AGGAAACGGGAGAATTTCGA+GGG | - | chr1.4:87540054-87540073 | MS.gene90856:intron | 45.0% | |
| ATCAAGAGCCAATGCTCGTT+TGG | + | chr1.4:87539758-87539777 | None:intergenic | 45.0% | |
| CAACCAAGTTCTGTTGCAAG+TGG | - | chr1.4:87540404-87540423 | MS.gene90856:CDS | 45.0% | |
| CTTGGTATGGACAAGGAAAC+GGG | - | chr1.4:87540041-87540060 | MS.gene90856:intron | 45.0% | |
| CTTGTCCATACCAAGTCGTA+TGG | + | chr1.4:87540036-87540055 | None:intergenic | 45.0% | |
| GAACTTGGTTGCTCAACAGT+TGG | + | chr1.4:87540395-87540414 | None:intergenic | 45.0% | |
| GAAGCAGCTATTTGTGGGTT+TGG | + | chr1.4:87540491-87540510 | None:intergenic | 45.0% | |
| GAGAGTAGTCAAACCACTAG+AGG | - | chr1.4:87539046-87539065 | MS.gene90856:intron | 45.0% | |
| GATGGTAAGAAACTCGGCTT+AGG | - | chr1.4:87538526-87538545 | MS.gene90856:CDS | 45.0% | |
| GCAGCTGAAAAATCAGTTGC+TGG | - | chr1.4:87540308-87540327 | MS.gene90856:CDS | 45.0% | |
| GCAGTAGAAGCAGCTATTTG+TGG | + | chr1.4:87540497-87540516 | None:intergenic | 45.0% | |
| GCCTTCCAAACAAGACACTT+TGG | + | chr1.4:87540136-87540155 | None:intergenic | 45.0% | |
| GGGGAGGGGTTTGTAAAAAA+AGG | - | chr1.4:87538625-87538644 | MS.gene90856:intron | 45.0% | |
| GTTCTGTTGCAAGTGGAAAG+AGG | - | chr1.4:87540411-87540430 | MS.gene90856:CDS | 45.0% | |
| GTTGCAAAGGTCGAAGCTTT+CGG | + | chr1.4:87537526-87537545 | None:intergenic | 45.0% | |
| TAGATGACATTGAGAGGGGA+AGG | - | chr1.4:87538667-87538686 | MS.gene90856:intron | 45.0% | |
| TCAAAACCCTCCTCATTTGG+GGG | - | chr1.4:87538717-87538736 | MS.gene90856:intron | 45.0% | |
| TCATTTGCAGTTGAGCAACC+AGG | - | chr1.4:87540356-87540375 | MS.gene90856:CDS | 45.0% | |
| TCCTGACACTGGCAAGTTTA+GGG | - | chr1.4:87539417-87539436 | MS.gene90856:intron | 45.0% | |
| TCTGGAGGGTTGGGAATATA+GGG | + | chr1.4:87538967-87538986 | None:intergenic | 45.0% | |
| TGGTAAGGCCAAAATTGCAG+AGG | - | chr1.4:87537910-87537929 | MS.gene90856:CDS | 45.0% | |
| TTCCTGACACTGGCAAGTTT+AGG | - | chr1.4:87539416-87539435 | MS.gene90856:intron | 45.0% | |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr1.4:87538596-87538615 | MS.gene90856:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr1.4:87539005-87539024 | None:intergenic | 45.0% |
| ! | TGCATGACTTTTCCTGACAC+TGG | - | chr1.4:87539406-87539425 | MS.gene90856:intron | 45.0% |
| !! | AAACGAGCATTGGCTCTTGA+TGG | - | chr1.4:87539757-87539776 | MS.gene90856:intron | 45.0% |
| !! | AAAGGCCATACGACTTGGTA+TGG | - | chr1.4:87540028-87540047 | MS.gene90856:intron | 45.0% |
| !! | ACAACTTGCTGACGTTTCTG+TGG | - | chr1.4:87539705-87539724 | MS.gene90856:intron | 45.0% |
| !! | ACTGATTTTTCACCTGCACC+TGG | + | chr1.4:87540233-87540252 | None:intergenic | 45.0% |
| !! | ACTGATTTTTCAGCTGCAGC+TGG | + | chr1.4:87540305-87540324 | None:intergenic | 45.0% |
| !! | CATACGACTTGGTATGGACA+AGG | - | chr1.4:87540034-87540053 | MS.gene90856:intron | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr1.4:87538595-87538614 | MS.gene90856:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr1.4:87539006-87539025 | None:intergenic | 45.0% |
| !!! | TATTGGAGGAGGGTTTTGGA+GGG | - | chr1.4:87538806-87538825 | MS.gene90856:intron | 45.0% |
| AAAACCCTCCTCATTTGGGG+GGG | - | chr1.4:87538719-87538738 | MS.gene90856:intron | 50.0% | |
| ACAATCAAGGGTCGGCTACA+TGG | + | chr1.4:87539184-87539203 | None:intergenic | 50.0% | |
| ACATTGAGAGGGGAAGGCTT+TGG | - | chr1.4:87538673-87538692 | MS.gene90856:intron | 50.0% | |
| ACCGCACAACTTATCCTGAC+AGG | + | chr1.4:87540158-87540177 | None:intergenic | 50.0% | |
| AGTCAAACCACTAGAGGCAG+AGG | - | chr1.4:87539052-87539071 | MS.gene90856:intron | 50.0% | |
| ATTGAGAGGGGAAGGCTTTG+GGG | - | chr1.4:87538675-87538694 | MS.gene90856:intron | 50.0% | |
| CAAAACCCTCCTCATTTGGG+GGG | - | chr1.4:87538718-87538737 | MS.gene90856:intron | 50.0% | |
| CATTGAGAGGGGAAGGCTTT+GGG | - | chr1.4:87538674-87538693 | MS.gene90856:intron | 50.0% | |
| CCTGACACTGGCAAGTTTAG+GGG | - | chr1.4:87539418-87539437 | MS.gene90856:intron | 50.0% | |
| CTGACACTGGCAAGTTTAGG+GGG | - | chr1.4:87539419-87539438 | MS.gene90856:intron | 50.0% | |
| CTGGAGGGTTGGGAATATAG+GGG | + | chr1.4:87538966-87538985 | None:intergenic | 50.0% | |
| GAAACTCGGCTTAGGTGGTT+TGG | - | chr1.4:87538534-87538553 | MS.gene90856:CDS | 50.0% | |
| GCAGTTGAAAAACCAGGTGC+AGG | - | chr1.4:87540254-87540273 | MS.gene90856:intron | 50.0% | |
| GCCTGTCAGGATAAGTTGTG+CGG | - | chr1.4:87540154-87540173 | MS.gene90856:intron | 50.0% | |
| GCTGGTGAAAAATCAGGTGC+CGG | - | chr1.4:87540326-87540345 | MS.gene90856:CDS | 50.0% | |
| GGTAAGAAACTCGGCTTAGG+TGG | - | chr1.4:87538529-87538548 | MS.gene90856:CDS | 50.0% | |
| TGAGTTCCCCCAAATGAGGA+GGG | + | chr1.4:87538779-87538798 | None:intergenic | 50.0% | |
| TTGAGTTCCCCCAAATGAGG+AGG | + | chr1.4:87538780-87538799 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | chr1.4:87538601-87538620 | MS.gene90856:intron | 50.0% | |
| ! | CCTGGTTTAGAACCTGCAAC+TGG | + | chr1.4:87540215-87540234 | None:intergenic | 50.0% |
| ! | CTCTGGAGGGTTGGGAATAT+AGG | + | chr1.4:87538968-87538987 | None:intergenic | 50.0% |
| ! | TCTTGTTTGGAAGGCCTGTC+AGG | - | chr1.4:87540141-87540160 | MS.gene90856:intron | 50.0% |
| ! | TGCTACGGGTGTCGTCAAAA+AGG | - | chr1.4:87540446-87540465 | MS.gene90856:CDS | 50.0% |
| !! | ACTGGTTTGGAACCTGCAAC+TGG | + | chr1.4:87540197-87540216 | None:intergenic | 50.0% |
| !! | CCAGTTGCAGGTTCTAAACC+AGG | - | chr1.4:87540212-87540231 | MS.gene90856:intron | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr1.4:87538594-87538613 | MS.gene90856:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr1.4:87539007-87539026 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+AGG | - | chr1.4:87538805-87538824 | MS.gene90856:intron | 50.0% |
| AAACCCTCCTCATTTGGGGG+GGG | - | chr1.4:87538720-87538739 | MS.gene90856:intron | 55.0% | |
| AGGTCTTCCTCTGCCTCTAG+TGG | + | chr1.4:87539062-87539081 | None:intergenic | 55.0% | |
| CCCCTAAACTTGCCAGTGTC+AGG | + | chr1.4:87539421-87539440 | None:intergenic | 55.0% | |
| CTTCCTGCAGACTGAAGCAG+CGG | - | chr1.4:87539732-87539751 | MS.gene90856:intron | 55.0% | |
| GAGGATGTGCGTTGGATGTG+TGG | - | chr1.4:87538427-87538446 | MS.gene90856:CDS | 55.0% | |
| GCAGGTTCCAAACCAGTTGC+AGG | - | chr1.4:87540200-87540219 | MS.gene90856:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | chr1.4:87538600-87538619 | MS.gene90856:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr1.4:87539001-87539020 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr1.4:87539002-87539021 | None:intergenic | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr1.4:87539000-87539019 | None:intergenic | 55.0% | |
| !! | GCAGGTTCTAAACCAGGTGC+AGG | - | chr1.4:87540218-87540237 | MS.gene90856:intron | 55.0% |
| !!! | GTTGGTTTTCCTCCTGCACC+TGG | + | chr1.4:87540377-87540396 | None:intergenic | 55.0% |
| AAAGCCCCCCCCAAATGAGG+AGG | + | chr1.4:87538727-87538746 | None:intergenic | 60.0% | |
| AAGCCCCCCCCAAATGAGGA+GGG | + | chr1.4:87538726-87538745 | None:intergenic | 60.0% | |
| AGCAGCGGCCAAACGAGCAT+TGG | - | chr1.4:87539747-87539766 | MS.gene90856:intron | 60.0% | |
| CCTCATTTGGGGGGGGCTTT+GGG | - | chr1.4:87538727-87538746 | MS.gene90856:intron | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | chr1.4:87538605-87538624 | MS.gene90856:intron | 60.0% | |
| CTCATTTGGGGGGGGCTTTG+GGG | - | chr1.4:87538728-87538747 | MS.gene90856:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr1.4:87538606-87538625 | MS.gene90856:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | + | chr1.4:87538995-87539014 | None:intergenic | 60.0% | |
| GCAGTTGAGCAACCAGGTGC+AGG | - | chr1.4:87540362-87540381 | MS.gene90856:CDS | 60.0% | |
| GTTGAGCAACCAGGTGCAGG+AGG | - | chr1.4:87540365-87540384 | MS.gene90856:CDS | 60.0% | |
| TCCTCATTTGGGGGGGGCTT+TGG | - | chr1.4:87538726-87538745 | MS.gene90856:intron | 60.0% | |
| !! | AAGGGAAGGCTCTGGAGGGT+TGG | + | chr1.4:87538977-87538996 | None:intergenic | 60.0% |
| !! | AGGGAAGGCTCTGGAGGGTT+GGG | + | chr1.4:87538976-87538995 | None:intergenic | 60.0% |
| CCCAAAGCCCCCCCCAAATG+AGG | + | chr1.4:87538730-87538749 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | chr1.4:87538604-87538623 | MS.gene90856:intron | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | chr1.4:87538996-87539015 | None:intergenic | 65.0% | |
| TGGCCGCTGCTTCAGTCTGC+AGG | + | chr1.4:87539738-87539757 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+GGG | - | chr1.4:87538610-87538629 | MS.gene90856:intron | 65.0% | |
| TTGGAGGGGAGGGGAAGGGA+AGG | + | chr1.4:87538991-87539010 | None:intergenic | 65.0% | |
| TTTGGAGGGGAAGGGAGGGG+AGG | - | chr1.4:87538609-87538628 | MS.gene90856:intron | 65.0% | |
| ! | AGGGGAAGGGAAGGCTCTGG+AGG | + | chr1.4:87538982-87539001 | None:intergenic | 65.0% |
| !! | GGGGAAGGGAAGGCTCTGGA+GGG | + | chr1.4:87538981-87539000 | None:intergenic | 65.0% |
| GGGAGGGGAAGGGAAGGCTC+TGG | + | chr1.4:87538985-87539004 | None:intergenic | 70.0% | |
| TGGAGGGGAAGGGAGGGGAG+GGG | - | chr1.4:87538611-87538630 | MS.gene90856:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87537362 | 87540523 | 87537362 | ID=MS.gene90856 |
| chr1.4 | mRNA | 87537362 | 87540523 | 87537362 | ID=MS.gene90856.t1;Parent=MS.gene90856 |
| chr1.4 | exon | 87540286 | 87540523 | 87540286 | ID=MS.gene90856.t1.exon1;Parent=MS.gene90856.t1 |
| chr1.4 | CDS | 87540286 | 87540523 | 87540286 | ID=cds.MS.gene90856.t1;Parent=MS.gene90856.t1 |
| chr1.4 | exon | 87539883 | 87539982 | 87539883 | ID=MS.gene90856.t1.exon2;Parent=MS.gene90856.t1 |
| chr1.4 | CDS | 87539883 | 87539982 | 87539883 | ID=cds.MS.gene90856.t1;Parent=MS.gene90856.t1 |
| chr1.4 | exon | 87538423 | 87538594 | 87538423 | ID=MS.gene90856.t1.exon3;Parent=MS.gene90856.t1 |
| chr1.4 | CDS | 87538423 | 87538594 | 87538423 | ID=cds.MS.gene90856.t1;Parent=MS.gene90856.t1 |
| chr1.4 | exon | 87538097 | 87538143 | 87538097 | ID=MS.gene90856.t1.exon4;Parent=MS.gene90856.t1 |
| chr1.4 | CDS | 87538097 | 87538143 | 87538097 | ID=cds.MS.gene90856.t1;Parent=MS.gene90856.t1 |
| chr1.4 | exon | 87537362 | 87538013 | 87537362 | ID=MS.gene90856.t1.exon5;Parent=MS.gene90856.t1 |
| chr1.4 | CDS | 87537362 | 87538013 | 87537362 | ID=cds.MS.gene90856.t1;Parent=MS.gene90856.t1 |
| Gene Sequence |
| Protein sequence |
