AlfalfaGEDB | MS.gene91525

M. sativa cultivar XinJiangDaYe / MS.gene91525

KEGG: -
GO: -
PFAM: PF07891.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91525.t1	XP_003621182.2	88.4	775	44	5	1	759	1	745	0.00E+00	1151

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91525.t1	Q2HVS4	88.4	775	44	5	1	759	1	745	0.0e+00	1151.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene91525	0.834373	3.11E-56	-1.69E-46
MS.gene049378	MS.gene91525	0.860884	1.51E-63	-1.69E-46
MS.gene049647	MS.gene91525	0.814069	1.86E-51	-1.69E-46
MS.gene049786	MS.gene91525	0.80119	1.01E-48	-1.69E-46
MS.gene04991	MS.gene91525	-0.817524	3.15E-52	-1.69E-46
MS.gene050105	MS.gene91525	0.805846	1.10E-49	-1.69E-46
MS.gene050226	MS.gene91525	0.807861	4.11E-50	-1.69E-46
MS.gene050227	MS.gene91525	0.815822	7.59E-52	-1.69E-46
MS.gene050228	MS.gene91525	0.81669	4.86E-52	-1.69E-46
MS.gene050623	MS.gene91525	-0.805286	1.44E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91525.t1	MTR_7g010160	89.175	776	36	6	1	759	1	745	0.0	1264
MS.gene91525.t1	MTR_5g040600	44.050	479	225	13	302	758	451	908	7.53e-107	347
MS.gene91525.t1	MTR_8g467380	42.175	377	193	10	380	737	452	822	1.08e-73	256
MS.gene91525.t1	MTR_8g467390	36.184	304	174	8	380	673	70	363	6.22e-46	168
MS.gene91525.t1	MTR_4g005350	35.366	328	183	14	435	758	122	424	4.81e-39	150
MS.gene91525.t1	MTR_6g084440	35.433	254	146	7	509	759	363	601	1.63e-25	112
MS.gene91525.t1	MTR_6g084440	35.547	256	145	8	509	759	363	603	2.07e-24	108
MS.gene91525.t1	MTR_8g104270	33.977	259	144	11	509	757	318	559	2.38e-20	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91525.t1	AT5G39785	54.768	409	164	9	368	758	200	605	4.19e-142	431
MS.gene91525.t1	AT5G39785	54.768	409	164	9	368	758	200	605	4.19e-142	431
MS.gene91525.t1	AT5G39785	54.768	409	164	9	368	758	200	605	4.19e-142	431
MS.gene91525.t1	AT5G39785	54.390	410	165	10	368	758	200	606	1.38e-139	424
MS.gene91525.t1	AT5G39785	51.613	434	164	10	368	758	200	630	1.89e-136	417
MS.gene91525.t1	AT1G69610	41.645	389	206	8	376	758	218	591	1.07e-80	270
MS.gene91525.t1	AT1G69610	41.645	389	206	8	376	758	262	635	6.08e-80	269
MS.gene91525.t1	AT1G69610	41.645	389	206	8	376	758	263	636	6.55e-80	269
MS.gene91525.t1	AT3G20260	34.234	333	190	9	435	758	124	436	1.27e-39	152
MS.gene91525.t1	AT3G01175	29.395	347	190	10	435	759	263	576	2.29e-27	118

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Find 102 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGTATGAGTTTATCTC+AGG	0.467675	7.1:+85282322	MS.gene91525:CDS
AACTACAGATTTCGATACAT+TGG	0.456260	7.1:+85282858	MS.gene91525:CDS
AACTTGAAGAAGTTTCTTCA+TGG	0.394542	7.1:-85285187	None:intergenic
AAGAAACTATTAATGCCACG+TGG	0.745035	7.1:-85284880	None:intergenic
AAGAATCCATTAGAACAATT+TGG	0.248534	7.1:+85286175	MS.gene91525:CDS
AAGAGAATTATATAGTGACT+TGG	0.594503	7.1:+85284948	MS.gene91525:CDS
AATAGTGAAGAGGTTGTTGG+TGG	0.673028	7.1:+85282481	MS.gene91525:CDS
AATGTCTCAGAAAAGTTACA+TGG	0.576721	7.1:+85282604	MS.gene91525:CDS
AATTAATCTAACAATTAATT+AGG	0.249365	7.1:-85287207	None:intergenic
ACAATTTGGCGTTTCATAAG+AGG	0.404653	7.1:+85286189	MS.gene91525:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGTCATAGAAAAATTG+TGG	-	chr7.1:85284594-85284613	None:intergenic	30.0%
AACAAGTATGAGTTTATCTC+AGG	+	chr7.1:85282322-85282341	MS.gene91525:CDS	30.0%
AACATAACTTTCCAAGAGAA+AGG	-	chr7.1:85284674-85284693	None:intergenic	30.0%
AACTACAGATTTCGATACAT+TGG	+	chr7.1:85282858-85282877	MS.gene91525:CDS	30.0%
AACTTGAAGAAGTTTCTTCA+TGG	-	chr7.1:85285190-85285209	None:intergenic	30.0%
AATGTCTCAGAAAAGTTACA+TGG	+	chr7.1:85282604-85282623	MS.gene91525:CDS	30.0%
ACTACAGATTTCGATACATT+GGG	+	chr7.1:85282859-85282878	MS.gene91525:CDS	30.0%
AGAAGAGGAAAAATCAAAGT+TGG	+	chr7.1:85282189-85282208	MS.gene91525:CDS	30.0%
AGATCCTAATTGTACTTGTT+AGG	+	chr7.1:85286684-85286703	MS.gene91525:intron	30.0%
AGTGCATGATCTATTATCAA+CGG	+	chr7.1:85285927-85285946	MS.gene91525:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	85281989	85287215	85281989	ID=MS.gene91525
chr7.1	mRNA	85281989	85287215	85281989	ID=MS.gene91525.t1;Parent=MS.gene91525
chr7.1	exon	85281989	85283357	85281989	ID=MS.gene91525.t1.exon1;Parent=MS.gene91525.t1
chr7.1	CDS	85281989	85283357	85281989	ID=cds.MS.gene91525.t1;Parent=MS.gene91525.t1
chr7.1	exon	85284803	85285222	85284803	ID=MS.gene91525.t1.exon2;Parent=MS.gene91525.t1
chr7.1	CDS	85284803	85285222	85284803	ID=cds.MS.gene91525.t1;Parent=MS.gene91525.t1
chr7.1	exon	85286088	85286323	85286088	ID=MS.gene91525.t1.exon3;Parent=MS.gene91525.t1
chr7.1	CDS	85286088	85286323	85286088	ID=cds.MS.gene91525.t1;Parent=MS.gene91525.t1
chr7.1	exon	85286961	85287215	85286961	ID=MS.gene91525.t1.exon4;Parent=MS.gene91525.t1
chr7.1	CDS	85286961	85287215	85286961	ID=cds.MS.gene91525.t1;Parent=MS.gene91525.t1

Gene Sequence

>MS.gene91525

ATGGTTCCGATTTGTCGTGCTGAATTTTCCATTGATAATCATGAAATTGAGTCAAGTTTTTCTGAGTCAAAAATTGAGGCTGAGGAAGAAGAATTTTATGAATGTTTTGAGGAAATTTCTGATACTGTTTCACATGAAGAGGTGGGAGTGTTTGGTTCTGAAAATGTTGATGATCATAGTGTGAATTTTGACCTAGAAAAAGAAGAGGAAAAATCAAAGTTGGTTTTCAAATTTCAATATCAAAATTGGAATTGCAATTTTAGTGAGGAATTGAAGGGAAATTTAAGTGAAAGTAGTGATTTTGAAAAAAGGGGTGGTGTTTCATCTAGTGTGAACAAGTATGAGTTTATCTCAGGAAAGAGTTTTAGTAAATTCTTGGATGAACCAAAGGCTTCAAATTTTGCTGTCAAAGAGTTTTTCGTTCATCCGAATGATAATGTTCCGTTGGCGAAAAATCATGTGGCCGATGATTCAGCTGGTTTGTTATCTGAGAATAGTGAAGAGGTTGTTGGTGGCGAAGTTGTTGATAGTTTCTCAGAAAAATTGCGCATACAGGAGGTTTCGGATAAGCTCAAGAATTCGGAACAAGAGGTTTTTAATGGGAAAATTGTTGATAATGTCTCAGAAAAGTTACATGGAGTGGAGGTTTCGAATAAGCTCAAGAATTCGGAACAAGAGGTTGTTGATGGGAAAATTGTCGATAATGTCTCAGAAAAGTTACACGAAGAGGAGGTTTTAGAGAAGCTCAAGAATTCAGAACCATATGCGCGTAATTTTCTTTCTGATGATGATTTCATTTGTTCAAGCTCTGATACAGATTCTATAAGTTCTTTGGACGATGGTTTTTTGTCGGACACAGATTTTGGAACAACTACAGATTTCGATACATTGGGAAACAATGAAGAAGAAAATGTAGAAGATTTGGACTTTAAGGATGAGGAAAGCATAGAAAGTTTGGATTTTGGTTATGAGCCGGACGATTTCGGAGAAGAAGACGAAGATATAATGAATGAGCTTGGAAAATTAGAAGAAGAAATCAGACAGGAAGAATCGCTGAAACAACAAAATTCGAAGAGTTTAACAGCTTTTGATCTCGATGAGTCGAACCGGTTCGACACACTTTGGGAGCATCAGGATTTGATAGAACAGCTGAAGATGGAATTGAAGAAGGTTAAAGCTACTGGTTTACCTACTATCTTTGAGGATTCTGAATCACCAAGGATTATGGAAGATTTGAAGCCATGGAAAATTGATGAAAAATTTCAGCAAGGTAACAGTACTACAAATGAGCTTCCAAAATTCTACAGAAGTTACAGAGAAAGAATGAGAAAATTTGATATCTTGAATTACCAAAAGATGTATGCTTTAGGTAAGTGTTTTTTTCTTTATCCATTGCTTTAAATTTATTTACCTTTCTTCAGCAAGTTGCATATTAGTTTTATTCAATGTTTTAAAATCGAATAGACAGTTCAACCGGTTGAATCATGAACCGACATTGTCTATGGTTCGATTATTTGAGCAGTTCGACTGCGATTTTGCCCTAACATTTTAAATACATTGAACCATGACCTAGAGGTCTCGCCTGGTCAATGTTTGGTTTAGTTCTTAAAGCATTGATTTTACTTGTTTGCTTCCTTGTTCATGACAATTTTCATTTAACATCCTTGATCATCAAAACCTACCTTATCTAAACCATTAAAAAGTGTAGAGGTGACGACCCTACTAAATCTGGTTAGTTGAGCATTCAGAAAGCATGAATTACCCTATTATATGTGACACAAAAGTAAATTTTATGACACACTTTTTCTCTTTCTTTTTACTCTTTTCTATTATTGGTTTTGTTTATGGCAAGTTATATTCACCTTCAAATATTCATTTAATTGATTTCTTATATTTTTTGTTATTGCAACAAAAAGTGGTAGGAATGGAGGTTGGACATTAAGGAATTGAACAACTTTTTATGTCACATGCTTGGCTCTACTCTTTGTACTCATTAATGCCAATCCCCATTACTTGGTAGCTTTGCATTTTTCCTAAATATAGCCATATAAGTCTTTTCTTGTTTGTTAACTATAATAAGTAGGAACACTATTCTTTTGGTTGCATATATTTATTGATCTTCACATGTTTTCTTTTATTTCAAGACCGTTGATATTTTAAAACTCCAATATCTAATTACTACTACACTATGAAGCACGGATACGGACACAGACTCTGGACACGACACAGATAATGACACGTCGACATCGTTAATAATTTGAGAAAATTACATAATTAAGTGTAACTATATGTGTCGGTGTCGGACATGAGTCGTGTCCTACACCGGAACACAGCTAATCCGAGAAGTATCCATGTTTCATAGGACTACTGCATCGGTCCCTAATTATTTCATATAACAATATTCCCTTAATTTGAGAGAAACTCAGAAATTTGTAATAATTGACAAGTATTAGGGAGAATTAAGTGATGATATTTTAGTCCAAAGAAATTTTATTTTTTCAAACATGTGTGCACTAACCTTAAACACCAATTAACAAAATATATACTTGCAAAAAGCTAGCTCACTTTCTCATTGTGATCTAGCACTGATTATAATGCTCCACCACAATTTTTCTATGACCCTTTTGTTTTTATGTATATAAACAATCCTTGCCATGCAAGACAAGTTTGGAAAGCCATTTTCCTTTCTCTTGGAAAGTTATGTTGAACTTTGAATAATCTATGTGGCCTTTTACATTATGCTTAATTTTTAAGACTCAAATCATAGTCATCATAATATTAATCTTTTTAAGTTTCTTGTATATATTTTTATAGGTCTAATGAAGTCAAAGGACCCACTAAAATCATTTTCAATTCATAAGAAATCTTCATCAACAATCACATGCATTCTTCCACGTGGCATTAATAGTTTCTTTAGACGTAATAGGAACACTGATGCTGACCCAATGAAGAAGTTCATAAGAGAATTATATAGTGACTTGGAAATGGTCTATGTGGGACACTTGTGTCTTTCTTGGGAATTTCTTCATTGGGAATATGAAAAGGCTTTGAAGATATGGGAATCTGATCAATATGGATTGAGAAGGTTCAATGAAGTAGCTGGAGAATTTCAACAATTCCAAGTTCTTCTACAAAGATTTATAGAGAATGAACCTTTTCAAGGTCCAAGGGTTGAAAATTATGCTAGGAATCGTTGTGCCATGAAGAAACTTCTTCAAGTTCCTGTTATAAAAGGTGAGAACTTTAAAAGTAATGTGAATATGGTTAGTCCATTGGTTAGACCTTTAAAAGTAATGGTATAGTATTTGAATTTGAAAGTTTGCATTTGCATTAGTGTCTCTATGAAGCACAGACACTCTTCGGATTAGCTGTGTCTTGATGTCAAACATGTGTTGTGTCCGACACGACACACCGACGCATATTTACACTAATTATGTGATTTTCGCAAATTATTAGCGGTGTTGGCTTGTCAGTGCTTGTATTGTGTTTGTGTCGTGTCTGGTGTTTGTGTCTGTATATATGCTTCATAGGTCTATGTGAAACAATTTTAGAGACTAAATTGACCGACTTAATAGGATTAATAGAATATACTAAAAGATTTTAAATTTCAAAGAACTTCATCGAAATATTAATAATTGAAGGTGTACTATAATTTGAAAAAGAGTAAATAATCAAATTGATTCTTGAAATTATAGGAATTTTATCAATCTACTTCAATGAATAGTTTGAGTATATACTCTTCCAAAAATCAAATAGTGATTCACTATTCAAACTTTTTGTTAAGTTGGCTCCACTTTCTTTGAACTATGTGGGGGACCGGGATTGGATTCCCTGCTGTAAATATAGTTACAGCAGGGTGCTGTAACAGCACAGAGCCGTCGGATCTGAATCGTGTGGTTAAGATGATGTGGAGTGATTTGACAACTGAGTTAATTTAGAGTGCATGATCTATTATCAACGGCTGAGATGCAAAACAGCGGCAAACAGCATGCTTTATTTACAGCAGGGAATCCAATCCCGTGGGGGACCATATACAGTTCTATATGTGAGACAAAATAGTTCATCATGGCTTTAAAAATTCTTCAATTATTTGTTGCAGAAGACAAAGGCAAGGATAAAAAGAAGTTTAGAAAAAGAGAAGTTGACAATGATGCCATCACAAGTGACATGCTAGTAGAAATATTAGAAGAATCCATTAGAACAATTTGGCGTTTCATAAGAGGTGATAAAGATGCATCAAACTTGACAATTAAATGTCTTAAAGAACAACATGTGGAGCTACAAGACCCTGCTGATTCACAACTTCTAGTGGAGCTTCTAACGGATCTTCAAAAGGTAATTGAAGCTTCAAATGATACTTATTTTTTAAGCTTAAAAATGTTTTAACTATTCTCTTAAAATAAGTAAATTGTTTTAACTATTCACAACTTCTAGTAGAGACTAATTGTATTTTGATGACCAAAGTTTCAATTGCATAGATAAATGATCAAAATAAGGAGAAAAAAAAATGAAAATTCATCGTATTTCGGTGCTTAAAAAGCATATTTAGGGCGCCAAAATATTGTTGGAAGAGTTGGTGACATGACTCTCTTTCCGGAAAATAATCCAAGTTTGATTTTGGAGTCGCCTATTTTTGGAATTGCTCCCATAGCGGGCCTAGGTGGTGAAATACCTTAAGGCGCCCGTAGAGGTCAAAGATCCTAATTGTACTTGTTAGGGAAAAAAAACAAACATATTTAAACCTATTGTGTAATGTCTTACTAATTTAGAAGTATCGAAAAAAGAATCAATAAAATGAAAATATAATTGATATATAATTTAAACATTTGATAACATAATAAGTACATTATATATAGAAATTTATCTATGTTGATTTTGAAGCAATGTGAAGACACTTGTTAGCATTTCCTTTTCTTATAAGAAGTTGTGTTCTGTTGTTTCTTATGTAAAACGTTGTTTTTTGAATTTGCAGAAGGAAAAGAGATTGAGAGAGGTTTTAAGGAGTGGAAGCTGCATATTGAAGAAATTCAAAAAGCATGATGAAGATGAAATAGATCCAGTTCTTTACTTTTTCTCTCAAGTGGATTTGAAACTTGTTTGTAGAGTGTTGAATATGTCAAGGATAACGACTGATCAACTAGCATGGTGTCGTAGTAAACTAAACAAGATCAATTTTGTAAACCGTAGGATACATGTAGAACCATCATTCTTACTTTTTCCTAATTAA

Protein sequence

>MS.gene91525.t1

MVPICRAEFSIDNHEIESSFSESKIEAEEEEFYECFEEISDTVSHEEVGVFGSENVDDHSVNFDLEKEEEKSKLVFKFQYQNWNCNFSEELKGNLSESSDFEKRGGVSSSVNKYEFISGKSFSKFLDEPKASNFAVKEFFVHPNDNVPLAKNHVADDSAGLLSENSEEVVGGEVVDSFSEKLRIQEVSDKLKNSEQEVFNGKIVDNVSEKLHGVEVSNKLKNSEQEVVDGKIVDNVSEKLHEEEVLEKLKNSEPYARNFLSDDDFICSSSDTDSISSLDDGFLSDTDFGTTTDFDTLGNNEEENVEDLDFKDEESIESLDFGYEPDDFGEEDEDIMNELGKLEEEIRQEESLKQQNSKSLTAFDLDESNRFDTLWEHQDLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQQGNSTTNELPKFYRSYRERMRKFDILNYQKMYALGLMKSKDPLKSFSIHKKSSSTITCILPRGINSFFRRNRNTDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWESDQYGLRRFNEVAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKKFRKREVDNDAITSDMLVEILEESIRTIWRFIRGDKDASNLTIKCLKEQHVELQDPADSQLLVELLTDLQKKEKRLREVLRSGSCILKKFKKHDEDEIDPVLYFFSQVDLKLVCRVLNMSRITTDQLAWCRSKLNKINFVNRRIHVEPSFLLFPN