AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94954


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94954.t1 MTR_3g460780 96.454 423 11 3 1 421 1 421 0.0 813
MS.gene94954.t1 MTR_5g098420 54.524 420 179 5 5 421 6 416 6.45e-146 422
MS.gene94954.t1 MTR_7g075453 43.210 405 217 9 26 421 17 417 6.64e-89 276
MS.gene94954.t1 MTR_1g009950 35.870 184 108 5 14 189 5 186 2.99e-27 109
MS.gene94954.t1 MTR_2g437700 29.345 351 230 11 5 342 3 348 1.91e-26 110
MS.gene94954.t1 MTR_1g009940 36.076 158 99 2 18 175 11 166 1.94e-24 102
MS.gene94954.t1 MTR_1g009910 35.443 158 100 2 18 175 11 166 2.80e-23 99.4
MS.gene94954.t1 MTR_3g108760 35.849 159 95 3 32 189 25 177 3.40e-21 92.8
MS.gene94954.t1 MTR_1g009920 36.154 130 81 2 18 147 11 138 2.31e-19 87.0
MS.gene94954.t1 MTR_4g059840 32.075 159 104 3 227 381 110 268 4.23e-15 75.9
MS.gene94954.t1 MTR_2g090765 29.064 203 127 5 179 365 22 223 1.13e-14 73.9
MS.gene94954.t1 MTR_4g059790 35.000 140 87 3 227 362 110 249 1.53e-14 74.3
MS.gene94954.t1 MTR_2g017950 29.949 197 116 6 227 421 113 289 5.37e-14 72.8
MS.gene94954.t1 MTR_2g017970 31.126 151 101 2 226 373 104 254 2.81e-13 70.1
MS.gene94954.t1 MTR_2g017960 31.126 151 101 2 226 373 104 254 5.32e-13 69.3
MS.gene94954.t1 MTR_4g053380 30.570 193 113 5 227 417 114 287 3.69e-12 67.0
MS.gene94954.t1 MTR_4g059720 24.862 181 128 3 165 337 9 189 8.44e-12 65.5
MS.gene94954.t1 MTR_7g101080 27.841 176 116 7 171 337 15 188 2.18e-11 64.3
MS.gene94954.t1 MTR_8g087460 29.843 191 122 5 227 412 132 315 2.23e-11 65.1
MS.gene94954.t1 MTR_8g087470 30.319 188 119 5 227 409 132 312 6.49e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94954.t1 AT5G55730 60.054 368 138 3 26 386 20 385 4.49e-141 409
MS.gene94954.t1 AT5G55730 60.054 368 138 3 26 386 20 385 4.49e-141 409
MS.gene94954.t1 AT4G12730 49.883 427 179 6 4 421 3 403 1.98e-135 394
MS.gene94954.t1 AT2G45470 45.939 394 200 8 12 400 11 396 1.86e-95 293
MS.gene94954.t1 AT3G60900 44.660 412 204 11 6 405 5 404 3.09e-94 290
MS.gene94954.t1 AT3G12660 42.405 158 89 1 21 178 14 169 5.82e-34 127
MS.gene94954.t1 AT3G46550 28.613 346 217 11 32 351 30 371 1.65e-29 119
MS.gene94954.t1 AT2G24450 40.606 165 93 3 18 182 12 171 5.21e-28 112
MS.gene94954.t1 AT4G31370 37.662 154 91 3 29 182 23 171 4.16e-23 98.6
MS.gene94954.t1 AT5G03170 29.121 182 119 7 177 351 18 196 1.03e-16 79.7
MS.gene94954.t1 AT2G20520 29.730 185 118 6 178 351 18 201 6.26e-16 77.4

Find 124 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCGCAGGAGTTGTTTAA+AGG 0.221845 3.1:+44629959 MS.gene94954:CDS
TGCGATCTATACTATTTCTA+AGG 0.259739 3.1:+44629931 MS.gene94954:CDS
TGGTTGAAGGTGGAGAGTTC+AGG 0.271991 3.1:-44629086 None:intergenic
TGCGGTGGTGGTTGTGAGTA+TGG 0.302859 3.1:-44629033 None:intergenic
GCATCCGCCGCAGCTGGTTC+CGG 0.325953 3.1:-44630013 None:intergenic
TTCTTCTTCTTCCCTTTCTT+CGG 0.342899 3.1:-44630046 None:intergenic
CTTCCCTTTCTTCGGTGGCT+CGG 0.353916 3.1:-44630038 None:intergenic
TTTGTGAAGCGAGGTGGGTT+AGG 0.375458 3.1:-44629118 None:intergenic
CGGCACCGCACCTGGCTCCT+CGG 0.378308 3.1:+44629334 MS.gene94954:CDS
GCCGCAGCTGGTTCCGGCGC+TGG 0.387906 3.1:-44630007 None:intergenic
TTCCCTTTCTTCGGTGGCTC+GGG 0.390436 3.1:-44630037 None:intergenic
GGTGGAGAGTTCAGGGTGTT+TGG 0.390523 3.1:-44629078 None:intergenic
GGTTGAAGGTGGAGAGTTCA+GGG 0.390623 3.1:-44629085 None:intergenic
GAGCTGTGCCGTTGGTGATT+TGG 0.395994 3.1:-44629286 None:intergenic
TGATGCTCCGGCTGATTCGC+CGG 0.402904 3.1:+44630102 MS.gene94954:CDS
GCTGGTTCCGGCGCTGGTGC+CGG 0.408270 3.1:-44630001 None:intergenic
CGTGGTTGGTGGTCGGAGAA+AGG 0.411695 3.1:-44628973 None:intergenic
TCGGGAGCATCCGCCGCAGC+TGG 0.418301 3.1:-44630019 None:intergenic
CAGGTGCGGTGCCGGTGGCT+TGG 0.421550 3.1:-44629325 None:intergenic
GTTTAACGGCATTGTTGGTA+TGG 0.425188 3.1:+44630174 MS.gene94954:CDS
GGCACCGCACCTGGCTCCTC+GGG 0.425947 3.1:+44629335 MS.gene94954:CDS
GTTAGGTTTAACGGCATTGT+TGG 0.429361 3.1:+44630169 MS.gene94954:CDS
ATCGTAGTTGCTAGCACCTT+CGG 0.429410 3.1:-44629816 None:intergenic
ACCAACCACGGCGGCGTTCA+CGG 0.433567 3.1:+44628986 MS.gene94954:CDS
ATAGGAATTGAGTTATAAAT+CGG 0.439207 3.1:-44629755 None:intergenic
ACCAGCGCCGGAACCAGCTG+CGG 0.445114 3.1:+44630006 MS.gene94954:CDS
TTGTGAAGCGAGGTGGGTTA+GGG 0.445997 3.1:-44629117 None:intergenic
CGCGGCGGTAAAGTCGGATT+CGG 0.446896 3.1:+44629380 MS.gene94954:CDS
ATGATAGTGACGGCGCCGTT+AGG 0.447313 3.1:+44630152 MS.gene94954:CDS
GATGCTCCGGCTGATTCGCC+GGG 0.451476 3.1:+44630103 MS.gene94954:CDS
CAAGCCACCGGCACCGCACC+TGG 0.453949 3.1:+44629326 MS.gene94954:CDS
ATAGATCTACTTGAATTTCA+CGG 0.454820 3.1:+44629728 MS.gene94954:CDS
TTCCATGGCGGCGTTGTCGA+CGG 0.460506 3.1:-44629171 None:intergenic
CGAGGAGCCAGGTGCGGTGC+CGG 0.461920 3.1:-44629333 None:intergenic
TGAATGACGGAGATGTTGTA+AGG 0.462499 3.1:-44629461 None:intergenic
GGTGATGTTGTGTGCGGTGG+TGG 0.464772 3.1:-44629045 None:intergenic
CGAGGAGGACGTGGAGGGAG+AGG 0.465014 3.1:-44629238 None:intergenic
GACGGCGCCGTTAGGTTTAA+CGG 0.465992 3.1:+44630160 MS.gene94954:CDS
TCCGGCGCTGGTGCCGGAGA+AGG 0.477111 3.1:-44629995 None:intergenic
TTCTAAGGTTCTTCTTCCGC+AGG 0.479096 3.1:+44629946 MS.gene94954:CDS
TAGGGATAGGTAGTGGTTGA+AGG 0.479349 3.1:-44629099 None:intergenic
CTCCCGAGCCACCGAAGAAA+GGG 0.482490 3.1:+44630035 MS.gene94954:CDS
TTCTTCTTCCCTTTCTTCGG+TGG 0.483955 3.1:-44630043 None:intergenic
TCATCGCCCGGCGAATCAGC+CGG 0.487471 3.1:-44630109 None:intergenic
GTGAACGCCGCCGTGGTTGG+TGG 0.489035 3.1:-44628984 None:intergenic
GCCGTGAACGCCGCCGTGGT+TGG 0.493659 3.1:-44628987 None:intergenic
GTGGTTGGTGGTCGGAGAAA+GGG 0.497067 3.1:-44628972 None:intergenic
TCCTTCTCCGGCACCAGCGC+CGG 0.498479 3.1:+44629994 MS.gene94954:CDS
CCATTGTTTGATTTCAGCAT+AGG 0.499150 3.1:-44629773 None:intergenic
TTGACGAATCCCGAGGAGCC+AGG 0.502884 3.1:-44629344 None:intergenic
CGCCGTCGACAACGCCGCCA+TGG 0.510696 3.1:+44629169 MS.gene94954:CDS
AAGCGAGGTGGGTTAGGGAT+AGG 0.517769 3.1:-44629112 None:intergenic
GCTCCCGAGCCACCGAAGAA+AGG 0.522409 3.1:+44630034 MS.gene94954:CDS
GCTGGTGCCGGAGAAGGACT+CGG 0.524838 3.1:-44629989 None:intergenic
GGCGTTGTCGACGGCGCAGA+CGG 0.526541 3.1:-44629162 None:intergenic
GACTTTACCGCCGCGGAGAT+CGG 0.526668 3.1:-44629372 None:intergenic
AGCTGCGACGGAGGGAAGAA+CGG 0.528677 3.1:-44629492 None:intergenic
GAAAGGGAAGAAGAAGAAGA+AGG 0.532780 3.1:+44630051 MS.gene94954:CDS
AGGGTGTTTGGCGAGAATGC+GGG 0.537575 3.1:-44629066 None:intergenic
TCATCAGCAGCGTCATCGCC+CGG 0.540746 3.1:-44630121 None:intergenic
AGCGCCGGAACCAGCTGCGG+CGG 0.543528 3.1:+44630009 MS.gene94954:CDS
CAGGGTGTTTGGCGAGAATG+CGG 0.545433 3.1:-44629067 None:intergenic
GGTGGTTGTGAGTATGGTGG+TGG 0.548162 3.1:-44629027 None:intergenic
TGTTGACTAGGTGCTGGTGT+AGG 0.548942 3.1:-44629521 None:intergenic
CGAAGTAGTCGAGGAGGACG+TGG 0.555716 3.1:-44629247 None:intergenic
GAAGAAGGTTGCTGATGCGC+CGG 0.557632 3.1:+44630066 MS.gene94954:CDS
GGAGCTTCAGCTGCGACGGA+GGG 0.557748 3.1:-44629500 None:intergenic
AGGAGCTTCAGCTGCGACGG+AGG 0.562022 3.1:-44629501 None:intergenic
TGAAGCTCCGAGTCCTTCTC+CGG 0.562374 3.1:+44629982 MS.gene94954:CDS
GGATAGGTAGTGGTTGAAGG+TGG 0.565027 3.1:-44629096 None:intergenic
GTCGACGGCGCAGACGGTGA+TGG 0.567942 3.1:-44629156 None:intergenic
GTTGTAAGGAATTTCTTCAA+CGG 0.569468 3.1:-44629447 None:intergenic
TGTAGGAGCTTCAGCTGCGA+CGG 0.577031 3.1:-44629504 None:intergenic
GGAGCCAGGTGCGGTGCCGG+TGG 0.577155 3.1:-44629330 None:intergenic
AACGGAGCTGATTTGAATGA+CGG 0.579151 3.1:-44629474 None:intergenic
CTCTTCACCGTCATTCTGAA+CGG 0.579947 3.1:-44629843 None:intergenic
AACGGCGCCGTCACTATCAT+CGG 0.583230 3.1:-44630149 None:intergenic
GATCTCCGCGGCGGTAAAGT+CGG 0.583897 3.1:+44629374 MS.gene94954:CDS
GTCGATTTGTGAAGCGAGGT+GGG 0.584151 3.1:-44629123 None:intergenic
GCTTTGAAAGCATCGTCGGC+GGG 0.585970 3.1:-44629665 None:intergenic
AGTAGTCGAGGAGGACGTGG+AGG 0.588606 3.1:-44629244 None:intergenic
AAATGCTTTGAAAGCATCGT+CGG 0.589223 3.1:-44629669 None:intergenic
GAAGGTTGCTGATGCGCCGG+CGG 0.590571 3.1:+44630069 MS.gene94954:CDS
ACGCCGCCGTGGTTGGTGGT+CGG 0.590761 3.1:-44628980 None:intergenic
GCATCAGAATCATCATCCGC+CGG 0.590786 3.1:-44630085 None:intergenic
GATTTCACCGTTCAGAATGA+CGG 0.593539 3.1:+44629836 MS.gene94954:CDS
TGCTTTGAAAGCATCGTCGG+CGG 0.598494 3.1:-44629666 None:intergenic
TGCCGCCGTGAACGCCGCCG+TGG 0.600404 3.1:-44628991 None:intergenic
AACAATGCCGTTAAACCTAA+CGG 0.601515 3.1:-44630167 None:intergenic
TGCTGTCGATTTGTGAAGCG+AGG 0.602342 3.1:-44629127 None:intergenic
GCGGGTGATGTTGTGTGCGG+TGG 0.603530 3.1:-44629048 None:intergenic
GGATGATGATTCTGATGCTC+CGG 0.604169 3.1:+44630090 MS.gene94954:CDS
TGTCGATTTGTGAAGCGAGG+TGG 0.606483 3.1:-44629124 None:intergenic
CACGTCCTCCTCGACTACTT+CGG 0.608983 3.1:+44629248 MS.gene94954:CDS
GCCACAATGTACCAAGCCAC+CGG 0.609019 3.1:+44629314 MS.gene94954:CDS
GGTGGGTTAGGGATAGGTAG+TGG 0.614122 3.1:-44629106 None:intergenic
GGCGGCGAGAGCTGTGCCGT+TGG 0.614966 3.1:-44629294 None:intergenic
GTAGTCGAGGAGGACGTGGA+GGG 0.616592 3.1:-44629243 None:intergenic
ATGCATACGCTTGCTACCGA+AGG 0.617023 3.1:+44629800 MS.gene94954:CDS
CTTTCTCCGACCACCAACCA+CGG 0.620715 3.1:+44628974 MS.gene94954:CDS
TTCGCCGACGCTATCGACGG+TGG 0.625574 3.1:+44629626 MS.gene94954:CDS
GGTGGTGGTTGTGAGTATGG+TGG 0.633909 3.1:-44629030 None:intergenic
TAATCCACCGTCGATAGCGT+CGG 0.638296 3.1:-44629630 None:intergenic
CCTATGCTGAAATCAAACAA+TGG 0.640665 3.1:+44629773 MS.gene94954:CDS
ACTTTCGCCGACGCTATCGA+CGG 0.644049 3.1:+44629623 MS.gene94954:CDS
GAAATAGTATAGATCGCAAG+CGG 0.653947 3.1:-44629926 None:intergenic
GAATCCCGAGGAGCCAGGTG+CGG 0.656714 3.1:-44629339 None:intergenic
TGGCGCCGAAGTAGTCGAGG+AGG 0.663047 3.1:-44629253 None:intergenic
AAGCTTCACCAAATCACCAA+CGG 0.667164 3.1:+44629278 MS.gene94954:CDS
GTTGAAGACAAAACGTGTGA+CGG 0.670703 3.1:+44629871 MS.gene94954:CDS
GCCGGTGGCTTGGTACATTG+TGG 0.674608 3.1:-44629315 None:intergenic
TCACCTTTAAACAACTCCTG+CGG 0.698483 3.1:-44629962 None:intergenic
GGTGGCTTGGTACATTGTGG+CGG 0.698484 3.1:-44629312 None:intergenic
GGTGATGTTGACGAATCCCG+AGG 0.699128 3.1:-44629351 None:intergenic
CGAATCCGACTTTACCGCCG+CGG 0.701704 3.1:-44629379 None:intergenic
TTCGGCGCTGAAAACAACGA+CGG 0.703875 3.1:+44629398 MS.gene94954:CDS
AACATCACCGATCTCCGCGG+CGG 0.706399 3.1:+44629365 MS.gene94954:CDS
AACCACGGCGGCGTTCACGG+CGG 0.708353 3.1:+44628989 MS.gene94954:CDS
ACCGTGATAATGTCAAAACA+CGG 0.717420 3.1:+44629551 MS.gene94954:CDS
GTCAACATCACCGATCTCCG+CGG 0.719545 3.1:+44629362 MS.gene94954:CDS
TGAGAGGAGATCTTCCATGG+CGG 0.723904 3.1:-44629183 None:intergenic
GATAATGCCGATGATAGTGA+CGG 0.726123 3.1:+44630142 MS.gene94954:CDS
TCTCCGACCACCAACCACGG+CGG 0.734739 3.1:+44628977 MS.gene94954:CDS
AATGCGGGTGATGTTGTGTG+CGG 0.752172 3.1:-44629051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGGAATTGAGTTATAAAT+CGG - chr3.1:44629758-44629777 None:intergenic 20.0%
! ATAGATCTACTTGAATTTCA+CGG + chr3.1:44629728-44629747 MS.gene94954:CDS 25.0%
!! ATGGTTAGGTTTTTGAATTT+CGG - chr3.1:44629698-44629717 None:intergenic 25.0%
!! TTCAAGTAGATCTATTTTAC+CGG - chr3.1:44629723-44629742 None:intergenic 25.0%
!!! ATGTTTTTGATGGTGTTTAT+AGG - chr3.1:44629218-44629237 None:intergenic 25.0%
GAAATTCAAAAACCTAACCA+TGG + chr3.1:44629697-44629716 MS.gene94954:CDS 30.0%
GTTGTAAGGAATTTCTTCAA+CGG - chr3.1:44629450-44629469 None:intergenic 30.0%
!! TGCGATCTATACTATTTCTA+AGG + chr3.1:44629931-44629950 MS.gene94954:CDS 30.0%
!!! ATGGTTTTAGCTTTGGTTTT+TGG + chr3.1:44630193-44630212 MS.gene94954:CDS 30.0%
!!! TGGTTTTAGCTTTGGTTTTT+GGG + chr3.1:44630194-44630213 MS.gene94954:CDS 30.0%
!!! TTTTGATGGTGTTTATAGGA+AGG - chr3.1:44629214-44629233 None:intergenic 30.0%
AACAATGCCGTTAAACCTAA+CGG - chr3.1:44630170-44630189 None:intergenic 35.0%
CCTATGCTGAAATCAAACAA+TGG + chr3.1:44629773-44629792 MS.gene94954:CDS 35.0%
GAAATAGTATAGATCGCAAG+CGG - chr3.1:44629929-44629948 None:intergenic 35.0%
TTCTTCTTCTTCCCTTTCTT+CGG - chr3.1:44630049-44630068 None:intergenic 35.0%
! ACCGTGATAATGTCAAAACA+CGG + chr3.1:44629551-44629570 MS.gene94954:CDS 35.0%
! CCATTGTTTGATTTCAGCAT+AGG - chr3.1:44629776-44629795 None:intergenic 35.0%
!! AAATGCTTTGAAAGCATCGT+CGG - chr3.1:44629672-44629691 None:intergenic 35.0%
!!! ACCGTGTTTTGACATTATCA+CGG - chr3.1:44629555-44629574 None:intergenic 35.0%
!!! TGTTGGTATGGTTTTAGCTT+TGG + chr3.1:44630186-44630205 MS.gene94954:CDS 35.0%
!!! TTATAGGAAGGTGTTTTGAG+AGG - chr3.1:44629202-44629221 None:intergenic 35.0%
AAGCTTCACCAAATCACCAA+CGG + chr3.1:44629278-44629297 MS.gene94954:CDS 40.0%
GAAAGGGAAGAAGAAGAAGA+AGG + chr3.1:44630051-44630070 MS.gene94954:CDS 40.0%
GATTTCACCGTTCAGAATGA+CGG + chr3.1:44629836-44629855 MS.gene94954:CDS 40.0%
GTTAGGTTTAACGGCATTGT+TGG + chr3.1:44630169-44630188 MS.gene94954:CDS 40.0%
GTTGAAGACAAAACGTGTGA+CGG + chr3.1:44629871-44629890 MS.gene94954:CDS 40.0%
GTTTAACGGCATTGTTGGTA+TGG + chr3.1:44630174-44630193 MS.gene94954:CDS 40.0%
TCACCTTTAAACAACTCCTG+CGG - chr3.1:44629965-44629984 None:intergenic 40.0%
TTCAAAAACCTAACCATGGC+CGG + chr3.1:44629701-44629720 MS.gene94954:CDS 40.0%
! GATAATGCCGATGATAGTGA+CGG + chr3.1:44630142-44630161 MS.gene94954:CDS 40.0%
! TAGATCTATTTTACCGGCCA+TGG - chr3.1:44629717-44629736 None:intergenic 40.0%
! TGAATGACGGAGATGTTGTA+AGG - chr3.1:44629464-44629483 None:intergenic 40.0%
!! AACGGAGCTGATTTGAATGA+CGG - chr3.1:44629477-44629496 None:intergenic 40.0%
!! GTTTTGACATTATCACGGTG+AGG - chr3.1:44629550-44629569 None:intergenic 40.0%
!! TTTTGAGAGGAGATCTTCCA+TGG - chr3.1:44629189-44629208 None:intergenic 40.0%
!!! GGTGATTTGGTGAAGCTTTT+TGG - chr3.1:44629276-44629295 None:intergenic 40.0%
ATCGTAGTTGCTAGCACCTT+CGG - chr3.1:44629819-44629838 None:intergenic 45.0%
CTCTTCACCGTCATTCTGAA+CGG - chr3.1:44629846-44629865 None:intergenic 45.0%
CTTCCGCAGGAGTTGTTTAA+AGG + chr3.1:44629959-44629978 MS.gene94954:CDS 45.0%
GGATGATGATTCTGATGCTC+CGG + chr3.1:44630090-44630109 MS.gene94954:CDS 45.0%
TTCTTCTTCCCTTTCTTCGG+TGG - chr3.1:44630046-44630065 None:intergenic 45.0%
! CTATTTTACCGGCCATGGTT+AGG - chr3.1:44629712-44629731 None:intergenic 45.0%
! TAGGGATAGGTAGTGGTTGA+AGG - chr3.1:44629102-44629121 None:intergenic 45.0%
!! GAGGGAGAGGATGTTTTTGA+TGG - chr3.1:44629228-44629247 None:intergenic 45.0%
!! TTCTAAGGTTCTTCTTCCGC+AGG + chr3.1:44629946-44629965 MS.gene94954:CDS 45.0%
!!! ACGGTGAGGTTTTGTTGACT+AGG - chr3.1:44629536-44629555 None:intergenic 45.0%
!!! AGGTTTTGTTGACTAGGTGC+TGG - chr3.1:44629530-44629549 None:intergenic 45.0%
AATGCGGGTGATGTTGTGTG+CGG - chr3.1:44629054-44629073 None:intergenic 50.0%
GCATCAGAATCATCATCCGC+CGG - chr3.1:44630088-44630107 None:intergenic 50.0%
GGTTGAAGGTGGAGAGTTCA+GGG - chr3.1:44629088-44629107 None:intergenic 50.0%
TAATCCACCGTCGATAGCGT+CGG - chr3.1:44629633-44629652 None:intergenic 50.0%
TGAGAGGAGATCTTCCATGG+CGG - chr3.1:44629186-44629205 None:intergenic 50.0%
TGGTTGAAGGTGGAGAGTTC+AGG - chr3.1:44629089-44629108 None:intergenic 50.0%
! ATGCATACGCTTGCTACCGA+AGG + chr3.1:44629800-44629819 MS.gene94954:CDS 50.0%
! GGATAGGTAGTGGTTGAAGG+TGG - chr3.1:44629099-44629118 None:intergenic 50.0%
! TTCGGCGCTGAAAACAACGA+CGG + chr3.1:44629398-44629417 MS.gene94954:CDS 50.0%
! TTTGTGAAGCGAGGTGGGTT+AGG - chr3.1:44629121-44629140 None:intergenic 50.0%
!! GTCGATTTGTGAAGCGAGGT+GGG - chr3.1:44629126-44629145 None:intergenic 50.0%
!! TGCTGTCGATTTGTGAAGCG+AGG - chr3.1:44629130-44629149 None:intergenic 50.0%
!! TGCTTTGAAAGCATCGTCGG+CGG - chr3.1:44629669-44629688 None:intergenic 50.0%
!! TGTCGATTTGTGAAGCGAGG+TGG - chr3.1:44629127-44629146 None:intergenic 50.0%
!! TGTTGACTAGGTGCTGGTGT+AGG - chr3.1:44629524-44629543 None:intergenic 50.0%
!! TTGTGAAGCGAGGTGGGTTA+GGG - chr3.1:44629120-44629139 None:intergenic 50.0%
AACGGCGCCGTCACTATCAT+CGG - chr3.1:44630152-44630171 None:intergenic 55.0%
ACTTTCGCCGACGCTATCGA+CGG + chr3.1:44629623-44629642 MS.gene94954:CDS 55.0%
CACGTCCTCCTCGACTACTT+CGG + chr3.1:44629248-44629267 MS.gene94954:CDS 55.0%
CTTCCCTTTCTTCGGTGGCT+CGG - chr3.1:44630041-44630060 None:intergenic 55.0%
CTTTCTCCGACCACCAACCA+CGG + chr3.1:44628974-44628993 MS.gene94954:CDS 55.0%
GAAGAAGGTTGCTGATGCGC+CGG + chr3.1:44630066-44630085 MS.gene94954:CDS 55.0%
GACGGCGCCGTTAGGTTTAA+CGG + chr3.1:44630160-44630179 MS.gene94954:CDS 55.0%
GCCACAATGTACCAAGCCAC+CGG + chr3.1:44629314-44629333 MS.gene94954:CDS 55.0%
GGTGATGTTGACGAATCCCG+AGG - chr3.1:44629354-44629373 None:intergenic 55.0%
GGTGGTTGTGAGTATGGTGG+TGG - chr3.1:44629030-44629049 None:intergenic 55.0%
GTCAACATCACCGATCTCCG+CGG + chr3.1:44629362-44629381 MS.gene94954:CDS 55.0%
TGAAGCTCCGAGTCCTTCTC+CGG + chr3.1:44629982-44630001 MS.gene94954:CDS 55.0%
TGTAGGAGCTTCAGCTGCGA+CGG - chr3.1:44629507-44629526 None:intergenic 55.0%
TTCCCTTTCTTCGGTGGCTC+GGG - chr3.1:44630040-44630059 None:intergenic 55.0%
! AGGGTGTTTGGCGAGAATGC+GGG - chr3.1:44629069-44629088 None:intergenic 55.0%
! ATGATAGTGACGGCGCCGTT+AGG + chr3.1:44630152-44630171 MS.gene94954:CDS 55.0%
! CAGGGTGTTTGGCGAGAATG+CGG - chr3.1:44629070-44629089 None:intergenic 55.0%
! GGTGGAGAGTTCAGGGTGTT+TGG - chr3.1:44629081-44629100 None:intergenic 55.0%
! GGTGGTGGTTGTGAGTATGG+TGG - chr3.1:44629033-44629052 None:intergenic 55.0%
! TGCGGTGGTGGTTGTGAGTA+TGG - chr3.1:44629036-44629055 None:intergenic 55.0%
!! AAGCGAGGTGGGTTAGGGAT+AGG - chr3.1:44629115-44629134 None:intergenic 55.0%
!! GAGCTGTGCCGTTGGTGATT+TGG - chr3.1:44629289-44629308 None:intergenic 55.0%
!! GCTTTGAAAGCATCGTCGGC+GGG - chr3.1:44629668-44629687 None:intergenic 55.0%
!! GGTGGCTTGGTACATTGTGG+CGG - chr3.1:44629315-44629334 None:intergenic 55.0%
!! GGTGGGTTAGGGATAGGTAG+TGG - chr3.1:44629109-44629128 None:intergenic 55.0%
!! GTGGTTGGTGGTCGGAGAAA+GGG - chr3.1:44628975-44628994 None:intergenic 55.0%
!! TTTTGGCGCCGAAGTAGTCG+AGG - chr3.1:44629259-44629278 None:intergenic 55.0%
AACATCACCGATCTCCGCGG+CGG + chr3.1:44629365-44629384 MS.gene94954:CDS 60.0%
AGCTGCGACGGAGGGAAGAA+CGG - chr3.1:44629495-44629514 None:intergenic 60.0%
AGTAGTCGAGGAGGACGTGG+AGG - chr3.1:44629247-44629266 None:intergenic 60.0%
CGAAGTAGTCGAGGAGGACG+TGG - chr3.1:44629250-44629269 None:intergenic 60.0%
CGAATCCGACTTTACCGCCG+CGG - chr3.1:44629382-44629401 None:intergenic 60.0%
CGCGGCGGTAAAGTCGGATT+CGG + chr3.1:44629380-44629399 MS.gene94954:CDS 60.0%
CTCCCGAGCCACCGAAGAAA+GGG + chr3.1:44630035-44630054 MS.gene94954:CDS 60.0%
GACTTTACCGCCGCGGAGAT+CGG - chr3.1:44629375-44629394 None:intergenic 60.0%
GATCTCCGCGGCGGTAAAGT+CGG + chr3.1:44629374-44629393 MS.gene94954:CDS 60.0%
GGTGATGTTGTGTGCGGTGG+TGG - chr3.1:44629048-44629067 None:intergenic 60.0%
GTAGTCGAGGAGGACGTGGA+GGG - chr3.1:44629246-44629265 None:intergenic 60.0%
TCATCAGCAGCGTCATCGCC+CGG - chr3.1:44630124-44630143 None:intergenic 60.0%
TTCCATGGCGGCGTTGTCGA+CGG - chr3.1:44629174-44629193 None:intergenic 60.0%
TTGACGAATCCCGAGGAGCC+AGG - chr3.1:44629347-44629366 None:intergenic 60.0%
!! CGTGGTTGGTGGTCGGAGAA+AGG - chr3.1:44628976-44628995 None:intergenic 60.0%
!! GCCGGTGGCTTGGTACATTG+TGG - chr3.1:44629318-44629337 None:intergenic 60.0%
!! TGATGCTCCGGCTGATTCGC+CGG + chr3.1:44630102-44630121 MS.gene94954:CDS 60.0%
ACCAACCACGGCGGCGTTCA+CGG + chr3.1:44628986-44629005 MS.gene94954:CDS 65.0%
AGGAGCTTCAGCTGCGACGG+AGG - chr3.1:44629504-44629523 None:intergenic 65.0%
GAAGGTTGCTGATGCGCCGG+CGG + chr3.1:44630069-44630088 MS.gene94954:CDS 65.0%
GAATCCCGAGGAGCCAGGTG+CGG - chr3.1:44629342-44629361 None:intergenic 65.0%
GCGGGTGATGTTGTGTGCGG+TGG - chr3.1:44629051-44629070 None:intergenic 65.0%
GCTCCCGAGCCACCGAAGAA+AGG + chr3.1:44630034-44630053 MS.gene94954:CDS 65.0%
GGAGCTTCAGCTGCGACGGA+GGG - chr3.1:44629503-44629522 None:intergenic 65.0%
TCATCGCCCGGCGAATCAGC+CGG - chr3.1:44630112-44630131 None:intergenic 65.0%
TCTCCGACCACCAACCACGG+CGG + chr3.1:44628977-44628996 MS.gene94954:CDS 65.0%
TTCGCCGACGCTATCGACGG+TGG + chr3.1:44629626-44629645 MS.gene94954:CDS 65.0%
! GCTGGTGCCGGAGAAGGACT+CGG - chr3.1:44629992-44630011 None:intergenic 65.0%
! TGGCGCCGAAGTAGTCGAGG+AGG - chr3.1:44629256-44629275 None:intergenic 65.0%
!! GATGCTCCGGCTGATTCGCC+GGG + chr3.1:44630103-44630122 MS.gene94954:CDS 65.0%
AACCACGGCGGCGTTCACGG+CGG + chr3.1:44628989-44629008 MS.gene94954:CDS 70.0%
CGAGGAGGACGTGGAGGGAG+AGG - chr3.1:44629241-44629260 None:intergenic 70.0%
GGCGTTGTCGACGGCGCAGA+CGG - chr3.1:44629165-44629184 None:intergenic 70.0%
GTCGACGGCGCAGACGGTGA+TGG - chr3.1:44629159-44629178 None:intergenic 70.0%
GTGAACGCCGCCGTGGTTGG+TGG - chr3.1:44628987-44629006 None:intergenic 70.0%
TCCTTCTCCGGCACCAGCGC+CGG + chr3.1:44629994-44630013 MS.gene94954:CDS 70.0%
! ACCAGCGCCGGAACCAGCTG+CGG + chr3.1:44630006-44630025 MS.gene94954:CDS 70.0%
! GCATCCGCCGCAGCTGGTTC+CGG - chr3.1:44630016-44630035 None:intergenic 70.0%
!! ACGCCGCCGTGGTTGGTGGT+CGG - chr3.1:44628983-44629002 None:intergenic 70.0%
CAAGCCACCGGCACCGCACC+TGG + chr3.1:44629326-44629345 MS.gene94954:CDS 75.0%
CGAGGAGCCAGGTGCGGTGC+CGG - chr3.1:44629336-44629355 None:intergenic 75.0%
CGCCGTCGACAACGCCGCCA+TGG + chr3.1:44629169-44629188 MS.gene94954:CDS 75.0%
CGGCACCGCACCTGGCTCCT+CGG + chr3.1:44629334-44629353 MS.gene94954:CDS 75.0%
GCCGTGAACGCCGCCGTGGT+TGG - chr3.1:44628990-44629009 None:intergenic 75.0%
GGCACCGCACCTGGCTCCTC+GGG + chr3.1:44629335-44629354 MS.gene94954:CDS 75.0%
GGCGGCGAGAGCTGTGCCGT+TGG - chr3.1:44629297-44629316 None:intergenic 75.0%
! AGCGCCGGAACCAGCTGCGG+CGG + chr3.1:44630009-44630028 MS.gene94954:CDS 75.0%
!! CAGGTGCGGTGCCGGTGGCT+TGG - chr3.1:44629328-44629347 None:intergenic 75.0%
!! GCTGGTTCCGGCGCTGGTGC+CGG - chr3.1:44630004-44630023 None:intergenic 75.0%
!! TCCGGCGCTGGTGCCGGAGA+AGG - chr3.1:44629998-44630017 None:intergenic 75.0%
!! TCGGGAGCATCCGCCGCAGC+TGG - chr3.1:44630022-44630041 None:intergenic 75.0%
! TGCCGCCGTGAACGCCGCCG+TGG - chr3.1:44628994-44629013 None:intergenic 80.0%
!! GCCGCAGCTGGTTCCGGCGC+TGG - chr3.1:44630010-44630029 None:intergenic 80.0%
!! GGAGCCAGGTGCGGTGCCGG+TGG - chr3.1:44629333-44629352 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 44628966 44630231 44628966 ID=MS.gene94954
chr3.1 mRNA 44628966 44630231 44628966 ID=MS.gene94954.t1;Parent=MS.gene94954
chr3.1 exon 44628966 44630231 44628966 ID=MS.gene94954.t1.exon1;Parent=MS.gene94954.t1
chr3.1 CDS 44628966 44630231 44628966 ID=cds.MS.gene94954.t1;Parent=MS.gene94954.t1
Gene Sequence

>MS.gene94954

ATGCATCCCTTTCTCCGACCACCAACCACGGCGGCGTTCACGGCGGCACTACTCATCATCACCACCACCATACTCACAACCACCACCGCACACAACATCACCCGCATTCTCGCCAAACACCCTGAACTCTCCACCTTCAACCACTACCTATCCCTAACCCACCTCGCTTCACAAATCGACAGCAGAACAACCATCACCGTCTGCGCCGTCGACAACGCCGCCATGGAAGATCTCCTCTCAAAACACCTTCCTATAAACACCATCAAAAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAAAAGCTTCACCAAATCACCAACGGCACAGCTCTCGCCGCCACAATGTACCAAGCCACCGGCACCGCACCTGGCTCCTCGGGATTCGTCAACATCACCGATCTCCGCGGCGGTAAAGTCGGATTCGGCGCTGAAAACAACGACGGAGCACTAACTGCTTCATACGTTAAATCCGTTGAAGAAATTCCTTACAACATCTCCGTCATTCAAATCAGCTCCGTTCTTCCCTCCGTCGCAGCTGAAGCTCCTACACCAGCACCTAGTCAACAAAACCTCACCGTGATAATGTCAAAACACGGTTGCAAAATCTTCGCTGAAACTCTTTCAACTTTTCACGAAGCTTACAACACTTTCGCCGACGCTATCGACGGTGGATTAAGCGTTTTCTGTCCCGCCGACGATGCTTTCAAAGCATTTCTTCCGAAATTCAAAAACCTAACCATGGCCGGTAAAATAGATCTACTTGAATTTCACGGCGTTCCGATTTATAACTCAATTCCTATGCTGAAATCAAACAATGGACTCATGCATACGCTTGCTACCGAAGGTGCTAGCAACTACGATTTCACCGTTCAGAATGACGGTGAAGAGATTACGTTGAAGACAAAACGTGTGACGGCGAAGATTATTGATACAATTATCGACGATCAACCGCTTGCGATCTATACTATTTCTAAGGTTCTTCTTCCGCAGGAGTTGTTTAAAGGTGAAGCTCCGAGTCCTTCTCCGGCACCAGCGCCGGAACCAGCTGCGGCGGATGCTCCCGAGCCACCGAAGAAAGGGAAGAAGAAGAAGAAGGTTGCTGATGCGCCGGCGGATGATGATTCTGATGCTCCGGCTGATTCGCCGGGCGATGACGCTGCTGATGATAATGCCGATGATAGTGACGGCGCCGTTAGGTTTAACGGCATTGTTGGTATGGTTTTAGCTTTGGTTTTTGGGTTTCTATTTCTATGA

Protein sequence

>MS.gene94954.t1

MHPFLRPPTTAAFTAALLIITTTILTTTTAHNITRILAKHPELSTFNHYLSLTHLASQIDSRTTITVCAVDNAAMEDLLSKHLPINTIKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSSGFVNITDLRGGKVGFGAENNDGALTASYVKSVEEIPYNISVIQISSVLPSVAAEAPTPAPSQQNLTVIMSKHGCKIFAETLSTFHEAYNTFADAIDGGLSVFCPADDAFKAFLPKFKNLTMAGKIDLLEFHGVPIYNSIPMLKSNNGLMHTLATEGASNYDFTVQNDGEEITLKTKRVTAKIIDTIIDDQPLAIYTISKVLLPQELFKGEAPSPSPAPAPEPAAADAPEPPKKGKKKKKVADAPADDDSDAPADSPGDDAADDNADDSDGAVRFNGIVGMVLALVFGFLFL