Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94954.t1 | XP_013460057.1 | 94.3 | 422 | 22 | 2 | 1 | 421 | 1 | 421 | 6.10E-173 | 617.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94954.t1 | Q9FM65 | 65.0 | 311 | 107 | 1 | 31 | 341 | 25 | 333 | 5.2e-112 | 406.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94954.t1 | A0A072UY96 | 94.3 | 422 | 22 | 2 | 1 | 421 | 1 | 421 | 4.4e-173 | 617.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049298 | MS.gene94954 | 0.877007 | 8.87E-69 | -1.69E-46 |
MS.gene050338 | MS.gene94954 | 0.805969 | 1.03E-49 | -1.69E-46 |
MS.gene050707 | MS.gene94954 | 0.84547 | 3.98E-59 | -1.69E-46 |
MS.gene050710 | MS.gene94954 | 0.809843 | 1.55E-50 | -1.69E-46 |
MS.gene050875 | MS.gene94954 | 0.811288 | 7.55E-51 | -1.69E-46 |
MS.gene051914 | MS.gene94954 | 0.86379 | 1.94E-64 | -1.69E-46 |
MS.gene052143 | MS.gene94954 | 0.800297 | 1.54E-48 | -1.69E-46 |
MS.gene052169 | MS.gene94954 | 0.838934 | 2.14E-57 | -1.69E-46 |
MS.gene052209 | MS.gene94954 | 0.84811 | 7.55E-60 | -1.69E-46 |
MS.gene052308 | MS.gene94954 | 0.876881 | 9.81E-69 | -1.69E-46 |
MS.gene052367 | MS.gene94954 | 0.819035 | 1.43E-52 | -1.69E-46 |
MS.gene053108 | MS.gene94954 | 0.800349 | 1.50E-48 | -1.69E-46 |
MS.gene053173 | MS.gene94954 | 0.861062 | 1.34E-63 | -1.69E-46 |
MS.gene053348 | MS.gene94954 | 0.839914 | 1.19E-57 | -1.69E-46 |
MS.gene054551 | MS.gene94954 | 0.874345 | 7.26E-68 | -1.69E-46 |
MS.gene054552 | MS.gene94954 | 0.811518 | 6.73E-51 | -1.69E-46 |
MS.gene054593 | MS.gene94954 | 0.880865 | 3.86E-70 | -1.69E-46 |
MS.gene054633 | MS.gene94954 | 0.826634 | 2.44E-54 | -1.69E-46 |
MS.gene054662 | MS.gene94954 | 0.8563 | 3.53E-62 | -1.69E-46 |
MS.gene054850 | MS.gene94954 | 0.847713 | 9.71E-60 | -1.69E-46 |
MS.gene054941 | MS.gene94954 | 0.889932 | 1.56E-73 | -1.69E-46 |
MS.gene055308 | MS.gene94954 | 0.87209 | 4.15E-67 | -1.69E-46 |
MS.gene055578 | MS.gene94954 | 0.844934 | 5.56E-59 | -1.69E-46 |
MS.gene055957 | MS.gene94954 | 0.81362 | 2.33E-51 | -1.69E-46 |
MS.gene056041 | MS.gene94954 | 0.860983 | 1.41E-63 | -1.69E-46 |
MS.gene056387 | MS.gene94954 | -0.807629 | 4.60E-50 | -1.69E-46 |
MS.gene05640 | MS.gene94954 | 0.865092 | 7.58E-65 | -1.69E-46 |
MS.gene056528 | MS.gene94954 | 0.836222 | 1.06E-56 | -1.69E-46 |
MS.gene05652 | MS.gene94954 | 0.942348 | 8.42E-102 | -1.69E-46 |
MS.gene056618 | MS.gene94954 | 0.825248 | 5.20E-54 | -1.69E-46 |
MS.gene057101 | MS.gene94954 | 0.815989 | 6.97E-52 | -1.69E-46 |
MS.gene057367 | MS.gene94954 | 0.850079 | 2.14E-60 | -1.69E-46 |
MS.gene057458 | MS.gene94954 | 0.824667 | 7.13E-54 | -1.69E-46 |
MS.gene057669 | MS.gene94954 | 0.885133 | 1.06E-71 | -1.69E-46 |
MS.gene057717 | MS.gene94954 | 0.811779 | 5.90E-51 | -1.69E-46 |
MS.gene058128 | MS.gene94954 | 0.892821 | 1.11E-74 | -1.69E-46 |
MS.gene058849 | MS.gene94954 | 0.826611 | 2.47E-54 | -1.69E-46 |
MS.gene058853 | MS.gene94954 | 0.892529 | 1.46E-74 | -1.69E-46 |
MS.gene05926 | MS.gene94954 | 0.861351 | 1.09E-63 | -1.69E-46 |
MS.gene059553 | MS.gene94954 | 0.805882 | 1.08E-49 | -1.69E-46 |
MS.gene059616 | MS.gene94954 | 0.871472 | 6.66E-67 | -1.69E-46 |
MS.gene059905 | MS.gene94954 | 0.83944 | 1.58E-57 | -1.69E-46 |
MS.gene060374 | MS.gene94954 | 0.804684 | 1.92E-49 | -1.69E-46 |
MS.gene060473 | MS.gene94954 | 0.817902 | 2.59E-52 | -1.69E-46 |
MS.gene060565 | MS.gene94954 | 0.806885 | 6.62E-50 | -1.69E-46 |
MS.gene06093 | MS.gene94954 | 0.861556 | 9.44E-64 | -1.69E-46 |
MS.gene060985 | MS.gene94954 | 0.825244 | 5.21E-54 | -1.69E-46 |
MS.gene061089 | MS.gene94954 | 0.807107 | 5.94E-50 | -1.69E-46 |
MS.gene061099 | MS.gene94954 | 0.835985 | 1.22E-56 | -1.69E-46 |
MS.gene061260 | MS.gene94954 | 0.813304 | 2.74E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94954.t1 | MTR_3g460780 | 96.454 | 423 | 11 | 3 | 1 | 421 | 1 | 421 | 0.0 | 813 |
MS.gene94954.t1 | MTR_5g098420 | 54.524 | 420 | 179 | 5 | 5 | 421 | 6 | 416 | 6.45e-146 | 422 |
MS.gene94954.t1 | MTR_7g075453 | 43.210 | 405 | 217 | 9 | 26 | 421 | 17 | 417 | 6.64e-89 | 276 |
MS.gene94954.t1 | MTR_1g009950 | 35.870 | 184 | 108 | 5 | 14 | 189 | 5 | 186 | 2.99e-27 | 109 |
MS.gene94954.t1 | MTR_2g437700 | 29.345 | 351 | 230 | 11 | 5 | 342 | 3 | 348 | 1.91e-26 | 110 |
MS.gene94954.t1 | MTR_1g009940 | 36.076 | 158 | 99 | 2 | 18 | 175 | 11 | 166 | 1.94e-24 | 102 |
MS.gene94954.t1 | MTR_1g009910 | 35.443 | 158 | 100 | 2 | 18 | 175 | 11 | 166 | 2.80e-23 | 99.4 |
MS.gene94954.t1 | MTR_3g108760 | 35.849 | 159 | 95 | 3 | 32 | 189 | 25 | 177 | 3.40e-21 | 92.8 |
MS.gene94954.t1 | MTR_1g009920 | 36.154 | 130 | 81 | 2 | 18 | 147 | 11 | 138 | 2.31e-19 | 87.0 |
MS.gene94954.t1 | MTR_4g059840 | 32.075 | 159 | 104 | 3 | 227 | 381 | 110 | 268 | 4.23e-15 | 75.9 |
MS.gene94954.t1 | MTR_2g090765 | 29.064 | 203 | 127 | 5 | 179 | 365 | 22 | 223 | 1.13e-14 | 73.9 |
MS.gene94954.t1 | MTR_4g059790 | 35.000 | 140 | 87 | 3 | 227 | 362 | 110 | 249 | 1.53e-14 | 74.3 |
MS.gene94954.t1 | MTR_2g017950 | 29.949 | 197 | 116 | 6 | 227 | 421 | 113 | 289 | 5.37e-14 | 72.8 |
MS.gene94954.t1 | MTR_2g017970 | 31.126 | 151 | 101 | 2 | 226 | 373 | 104 | 254 | 2.81e-13 | 70.1 |
MS.gene94954.t1 | MTR_2g017960 | 31.126 | 151 | 101 | 2 | 226 | 373 | 104 | 254 | 5.32e-13 | 69.3 |
MS.gene94954.t1 | MTR_4g053380 | 30.570 | 193 | 113 | 5 | 227 | 417 | 114 | 287 | 3.69e-12 | 67.0 |
MS.gene94954.t1 | MTR_4g059720 | 24.862 | 181 | 128 | 3 | 165 | 337 | 9 | 189 | 8.44e-12 | 65.5 |
MS.gene94954.t1 | MTR_7g101080 | 27.841 | 176 | 116 | 7 | 171 | 337 | 15 | 188 | 2.18e-11 | 64.3 |
MS.gene94954.t1 | MTR_8g087460 | 29.843 | 191 | 122 | 5 | 227 | 412 | 132 | 315 | 2.23e-11 | 65.1 |
MS.gene94954.t1 | MTR_8g087470 | 30.319 | 188 | 119 | 5 | 227 | 409 | 132 | 312 | 6.49e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94954.t1 | AT5G55730 | 60.054 | 368 | 138 | 3 | 26 | 386 | 20 | 385 | 4.49e-141 | 409 |
MS.gene94954.t1 | AT5G55730 | 60.054 | 368 | 138 | 3 | 26 | 386 | 20 | 385 | 4.49e-141 | 409 |
MS.gene94954.t1 | AT4G12730 | 49.883 | 427 | 179 | 6 | 4 | 421 | 3 | 403 | 1.98e-135 | 394 |
MS.gene94954.t1 | AT2G45470 | 45.939 | 394 | 200 | 8 | 12 | 400 | 11 | 396 | 1.86e-95 | 293 |
MS.gene94954.t1 | AT3G60900 | 44.660 | 412 | 204 | 11 | 6 | 405 | 5 | 404 | 3.09e-94 | 290 |
MS.gene94954.t1 | AT3G12660 | 42.405 | 158 | 89 | 1 | 21 | 178 | 14 | 169 | 5.82e-34 | 127 |
MS.gene94954.t1 | AT3G46550 | 28.613 | 346 | 217 | 11 | 32 | 351 | 30 | 371 | 1.65e-29 | 119 |
MS.gene94954.t1 | AT2G24450 | 40.606 | 165 | 93 | 3 | 18 | 182 | 12 | 171 | 5.21e-28 | 112 |
MS.gene94954.t1 | AT4G31370 | 37.662 | 154 | 91 | 3 | 29 | 182 | 23 | 171 | 4.16e-23 | 98.6 |
MS.gene94954.t1 | AT5G03170 | 29.121 | 182 | 119 | 7 | 177 | 351 | 18 | 196 | 1.03e-16 | 79.7 |
MS.gene94954.t1 | AT2G20520 | 29.730 | 185 | 118 | 6 | 178 | 351 | 18 | 201 | 6.26e-16 | 77.4 |
Find 124 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCGCAGGAGTTGTTTAA+AGG | 0.221845 | 3.1:+44629959 | MS.gene94954:CDS |
TGCGATCTATACTATTTCTA+AGG | 0.259739 | 3.1:+44629931 | MS.gene94954:CDS |
TGGTTGAAGGTGGAGAGTTC+AGG | 0.271991 | 3.1:-44629086 | None:intergenic |
TGCGGTGGTGGTTGTGAGTA+TGG | 0.302859 | 3.1:-44629033 | None:intergenic |
GCATCCGCCGCAGCTGGTTC+CGG | 0.325953 | 3.1:-44630013 | None:intergenic |
TTCTTCTTCTTCCCTTTCTT+CGG | 0.342899 | 3.1:-44630046 | None:intergenic |
CTTCCCTTTCTTCGGTGGCT+CGG | 0.353916 | 3.1:-44630038 | None:intergenic |
TTTGTGAAGCGAGGTGGGTT+AGG | 0.375458 | 3.1:-44629118 | None:intergenic |
CGGCACCGCACCTGGCTCCT+CGG | 0.378308 | 3.1:+44629334 | MS.gene94954:CDS |
GCCGCAGCTGGTTCCGGCGC+TGG | 0.387906 | 3.1:-44630007 | None:intergenic |
TTCCCTTTCTTCGGTGGCTC+GGG | 0.390436 | 3.1:-44630037 | None:intergenic |
GGTGGAGAGTTCAGGGTGTT+TGG | 0.390523 | 3.1:-44629078 | None:intergenic |
GGTTGAAGGTGGAGAGTTCA+GGG | 0.390623 | 3.1:-44629085 | None:intergenic |
GAGCTGTGCCGTTGGTGATT+TGG | 0.395994 | 3.1:-44629286 | None:intergenic |
TGATGCTCCGGCTGATTCGC+CGG | 0.402904 | 3.1:+44630102 | MS.gene94954:CDS |
GCTGGTTCCGGCGCTGGTGC+CGG | 0.408270 | 3.1:-44630001 | None:intergenic |
CGTGGTTGGTGGTCGGAGAA+AGG | 0.411695 | 3.1:-44628973 | None:intergenic |
TCGGGAGCATCCGCCGCAGC+TGG | 0.418301 | 3.1:-44630019 | None:intergenic |
CAGGTGCGGTGCCGGTGGCT+TGG | 0.421550 | 3.1:-44629325 | None:intergenic |
GTTTAACGGCATTGTTGGTA+TGG | 0.425188 | 3.1:+44630174 | MS.gene94954:CDS |
GGCACCGCACCTGGCTCCTC+GGG | 0.425947 | 3.1:+44629335 | MS.gene94954:CDS |
GTTAGGTTTAACGGCATTGT+TGG | 0.429361 | 3.1:+44630169 | MS.gene94954:CDS |
ATCGTAGTTGCTAGCACCTT+CGG | 0.429410 | 3.1:-44629816 | None:intergenic |
ACCAACCACGGCGGCGTTCA+CGG | 0.433567 | 3.1:+44628986 | MS.gene94954:CDS |
ATAGGAATTGAGTTATAAAT+CGG | 0.439207 | 3.1:-44629755 | None:intergenic |
ACCAGCGCCGGAACCAGCTG+CGG | 0.445114 | 3.1:+44630006 | MS.gene94954:CDS |
TTGTGAAGCGAGGTGGGTTA+GGG | 0.445997 | 3.1:-44629117 | None:intergenic |
CGCGGCGGTAAAGTCGGATT+CGG | 0.446896 | 3.1:+44629380 | MS.gene94954:CDS |
ATGATAGTGACGGCGCCGTT+AGG | 0.447313 | 3.1:+44630152 | MS.gene94954:CDS |
GATGCTCCGGCTGATTCGCC+GGG | 0.451476 | 3.1:+44630103 | MS.gene94954:CDS |
CAAGCCACCGGCACCGCACC+TGG | 0.453949 | 3.1:+44629326 | MS.gene94954:CDS |
ATAGATCTACTTGAATTTCA+CGG | 0.454820 | 3.1:+44629728 | MS.gene94954:CDS |
TTCCATGGCGGCGTTGTCGA+CGG | 0.460506 | 3.1:-44629171 | None:intergenic |
CGAGGAGCCAGGTGCGGTGC+CGG | 0.461920 | 3.1:-44629333 | None:intergenic |
TGAATGACGGAGATGTTGTA+AGG | 0.462499 | 3.1:-44629461 | None:intergenic |
GGTGATGTTGTGTGCGGTGG+TGG | 0.464772 | 3.1:-44629045 | None:intergenic |
CGAGGAGGACGTGGAGGGAG+AGG | 0.465014 | 3.1:-44629238 | None:intergenic |
GACGGCGCCGTTAGGTTTAA+CGG | 0.465992 | 3.1:+44630160 | MS.gene94954:CDS |
TCCGGCGCTGGTGCCGGAGA+AGG | 0.477111 | 3.1:-44629995 | None:intergenic |
TTCTAAGGTTCTTCTTCCGC+AGG | 0.479096 | 3.1:+44629946 | MS.gene94954:CDS |
TAGGGATAGGTAGTGGTTGA+AGG | 0.479349 | 3.1:-44629099 | None:intergenic |
CTCCCGAGCCACCGAAGAAA+GGG | 0.482490 | 3.1:+44630035 | MS.gene94954:CDS |
TTCTTCTTCCCTTTCTTCGG+TGG | 0.483955 | 3.1:-44630043 | None:intergenic |
TCATCGCCCGGCGAATCAGC+CGG | 0.487471 | 3.1:-44630109 | None:intergenic |
GTGAACGCCGCCGTGGTTGG+TGG | 0.489035 | 3.1:-44628984 | None:intergenic |
GCCGTGAACGCCGCCGTGGT+TGG | 0.493659 | 3.1:-44628987 | None:intergenic |
GTGGTTGGTGGTCGGAGAAA+GGG | 0.497067 | 3.1:-44628972 | None:intergenic |
TCCTTCTCCGGCACCAGCGC+CGG | 0.498479 | 3.1:+44629994 | MS.gene94954:CDS |
CCATTGTTTGATTTCAGCAT+AGG | 0.499150 | 3.1:-44629773 | None:intergenic |
TTGACGAATCCCGAGGAGCC+AGG | 0.502884 | 3.1:-44629344 | None:intergenic |
CGCCGTCGACAACGCCGCCA+TGG | 0.510696 | 3.1:+44629169 | MS.gene94954:CDS |
AAGCGAGGTGGGTTAGGGAT+AGG | 0.517769 | 3.1:-44629112 | None:intergenic |
GCTCCCGAGCCACCGAAGAA+AGG | 0.522409 | 3.1:+44630034 | MS.gene94954:CDS |
GCTGGTGCCGGAGAAGGACT+CGG | 0.524838 | 3.1:-44629989 | None:intergenic |
GGCGTTGTCGACGGCGCAGA+CGG | 0.526541 | 3.1:-44629162 | None:intergenic |
GACTTTACCGCCGCGGAGAT+CGG | 0.526668 | 3.1:-44629372 | None:intergenic |
AGCTGCGACGGAGGGAAGAA+CGG | 0.528677 | 3.1:-44629492 | None:intergenic |
GAAAGGGAAGAAGAAGAAGA+AGG | 0.532780 | 3.1:+44630051 | MS.gene94954:CDS |
AGGGTGTTTGGCGAGAATGC+GGG | 0.537575 | 3.1:-44629066 | None:intergenic |
TCATCAGCAGCGTCATCGCC+CGG | 0.540746 | 3.1:-44630121 | None:intergenic |
AGCGCCGGAACCAGCTGCGG+CGG | 0.543528 | 3.1:+44630009 | MS.gene94954:CDS |
CAGGGTGTTTGGCGAGAATG+CGG | 0.545433 | 3.1:-44629067 | None:intergenic |
GGTGGTTGTGAGTATGGTGG+TGG | 0.548162 | 3.1:-44629027 | None:intergenic |
TGTTGACTAGGTGCTGGTGT+AGG | 0.548942 | 3.1:-44629521 | None:intergenic |
CGAAGTAGTCGAGGAGGACG+TGG | 0.555716 | 3.1:-44629247 | None:intergenic |
GAAGAAGGTTGCTGATGCGC+CGG | 0.557632 | 3.1:+44630066 | MS.gene94954:CDS |
GGAGCTTCAGCTGCGACGGA+GGG | 0.557748 | 3.1:-44629500 | None:intergenic |
AGGAGCTTCAGCTGCGACGG+AGG | 0.562022 | 3.1:-44629501 | None:intergenic |
TGAAGCTCCGAGTCCTTCTC+CGG | 0.562374 | 3.1:+44629982 | MS.gene94954:CDS |
GGATAGGTAGTGGTTGAAGG+TGG | 0.565027 | 3.1:-44629096 | None:intergenic |
GTCGACGGCGCAGACGGTGA+TGG | 0.567942 | 3.1:-44629156 | None:intergenic |
GTTGTAAGGAATTTCTTCAA+CGG | 0.569468 | 3.1:-44629447 | None:intergenic |
TGTAGGAGCTTCAGCTGCGA+CGG | 0.577031 | 3.1:-44629504 | None:intergenic |
GGAGCCAGGTGCGGTGCCGG+TGG | 0.577155 | 3.1:-44629330 | None:intergenic |
AACGGAGCTGATTTGAATGA+CGG | 0.579151 | 3.1:-44629474 | None:intergenic |
CTCTTCACCGTCATTCTGAA+CGG | 0.579947 | 3.1:-44629843 | None:intergenic |
AACGGCGCCGTCACTATCAT+CGG | 0.583230 | 3.1:-44630149 | None:intergenic |
GATCTCCGCGGCGGTAAAGT+CGG | 0.583897 | 3.1:+44629374 | MS.gene94954:CDS |
GTCGATTTGTGAAGCGAGGT+GGG | 0.584151 | 3.1:-44629123 | None:intergenic |
GCTTTGAAAGCATCGTCGGC+GGG | 0.585970 | 3.1:-44629665 | None:intergenic |
AGTAGTCGAGGAGGACGTGG+AGG | 0.588606 | 3.1:-44629244 | None:intergenic |
AAATGCTTTGAAAGCATCGT+CGG | 0.589223 | 3.1:-44629669 | None:intergenic |
GAAGGTTGCTGATGCGCCGG+CGG | 0.590571 | 3.1:+44630069 | MS.gene94954:CDS |
ACGCCGCCGTGGTTGGTGGT+CGG | 0.590761 | 3.1:-44628980 | None:intergenic |
GCATCAGAATCATCATCCGC+CGG | 0.590786 | 3.1:-44630085 | None:intergenic |
GATTTCACCGTTCAGAATGA+CGG | 0.593539 | 3.1:+44629836 | MS.gene94954:CDS |
TGCTTTGAAAGCATCGTCGG+CGG | 0.598494 | 3.1:-44629666 | None:intergenic |
TGCCGCCGTGAACGCCGCCG+TGG | 0.600404 | 3.1:-44628991 | None:intergenic |
AACAATGCCGTTAAACCTAA+CGG | 0.601515 | 3.1:-44630167 | None:intergenic |
TGCTGTCGATTTGTGAAGCG+AGG | 0.602342 | 3.1:-44629127 | None:intergenic |
GCGGGTGATGTTGTGTGCGG+TGG | 0.603530 | 3.1:-44629048 | None:intergenic |
GGATGATGATTCTGATGCTC+CGG | 0.604169 | 3.1:+44630090 | MS.gene94954:CDS |
TGTCGATTTGTGAAGCGAGG+TGG | 0.606483 | 3.1:-44629124 | None:intergenic |
CACGTCCTCCTCGACTACTT+CGG | 0.608983 | 3.1:+44629248 | MS.gene94954:CDS |
GCCACAATGTACCAAGCCAC+CGG | 0.609019 | 3.1:+44629314 | MS.gene94954:CDS |
GGTGGGTTAGGGATAGGTAG+TGG | 0.614122 | 3.1:-44629106 | None:intergenic |
GGCGGCGAGAGCTGTGCCGT+TGG | 0.614966 | 3.1:-44629294 | None:intergenic |
GTAGTCGAGGAGGACGTGGA+GGG | 0.616592 | 3.1:-44629243 | None:intergenic |
ATGCATACGCTTGCTACCGA+AGG | 0.617023 | 3.1:+44629800 | MS.gene94954:CDS |
CTTTCTCCGACCACCAACCA+CGG | 0.620715 | 3.1:+44628974 | MS.gene94954:CDS |
TTCGCCGACGCTATCGACGG+TGG | 0.625574 | 3.1:+44629626 | MS.gene94954:CDS |
GGTGGTGGTTGTGAGTATGG+TGG | 0.633909 | 3.1:-44629030 | None:intergenic |
TAATCCACCGTCGATAGCGT+CGG | 0.638296 | 3.1:-44629630 | None:intergenic |
CCTATGCTGAAATCAAACAA+TGG | 0.640665 | 3.1:+44629773 | MS.gene94954:CDS |
ACTTTCGCCGACGCTATCGA+CGG | 0.644049 | 3.1:+44629623 | MS.gene94954:CDS |
GAAATAGTATAGATCGCAAG+CGG | 0.653947 | 3.1:-44629926 | None:intergenic |
GAATCCCGAGGAGCCAGGTG+CGG | 0.656714 | 3.1:-44629339 | None:intergenic |
TGGCGCCGAAGTAGTCGAGG+AGG | 0.663047 | 3.1:-44629253 | None:intergenic |
AAGCTTCACCAAATCACCAA+CGG | 0.667164 | 3.1:+44629278 | MS.gene94954:CDS |
GTTGAAGACAAAACGTGTGA+CGG | 0.670703 | 3.1:+44629871 | MS.gene94954:CDS |
GCCGGTGGCTTGGTACATTG+TGG | 0.674608 | 3.1:-44629315 | None:intergenic |
TCACCTTTAAACAACTCCTG+CGG | 0.698483 | 3.1:-44629962 | None:intergenic |
GGTGGCTTGGTACATTGTGG+CGG | 0.698484 | 3.1:-44629312 | None:intergenic |
GGTGATGTTGACGAATCCCG+AGG | 0.699128 | 3.1:-44629351 | None:intergenic |
CGAATCCGACTTTACCGCCG+CGG | 0.701704 | 3.1:-44629379 | None:intergenic |
TTCGGCGCTGAAAACAACGA+CGG | 0.703875 | 3.1:+44629398 | MS.gene94954:CDS |
AACATCACCGATCTCCGCGG+CGG | 0.706399 | 3.1:+44629365 | MS.gene94954:CDS |
AACCACGGCGGCGTTCACGG+CGG | 0.708353 | 3.1:+44628989 | MS.gene94954:CDS |
ACCGTGATAATGTCAAAACA+CGG | 0.717420 | 3.1:+44629551 | MS.gene94954:CDS |
GTCAACATCACCGATCTCCG+CGG | 0.719545 | 3.1:+44629362 | MS.gene94954:CDS |
TGAGAGGAGATCTTCCATGG+CGG | 0.723904 | 3.1:-44629183 | None:intergenic |
GATAATGCCGATGATAGTGA+CGG | 0.726123 | 3.1:+44630142 | MS.gene94954:CDS |
TCTCCGACCACCAACCACGG+CGG | 0.734739 | 3.1:+44628977 | MS.gene94954:CDS |
AATGCGGGTGATGTTGTGTG+CGG | 0.752172 | 3.1:-44629051 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGGAATTGAGTTATAAAT+CGG | - | chr3.1:44629758-44629777 | None:intergenic | 20.0% |
! | ATAGATCTACTTGAATTTCA+CGG | + | chr3.1:44629728-44629747 | MS.gene94954:CDS | 25.0% |
!! | ATGGTTAGGTTTTTGAATTT+CGG | - | chr3.1:44629698-44629717 | None:intergenic | 25.0% |
!! | TTCAAGTAGATCTATTTTAC+CGG | - | chr3.1:44629723-44629742 | None:intergenic | 25.0% |
!!! | ATGTTTTTGATGGTGTTTAT+AGG | - | chr3.1:44629218-44629237 | None:intergenic | 25.0% |
GAAATTCAAAAACCTAACCA+TGG | + | chr3.1:44629697-44629716 | MS.gene94954:CDS | 30.0% | |
GTTGTAAGGAATTTCTTCAA+CGG | - | chr3.1:44629450-44629469 | None:intergenic | 30.0% | |
!! | TGCGATCTATACTATTTCTA+AGG | + | chr3.1:44629931-44629950 | MS.gene94954:CDS | 30.0% |
!!! | ATGGTTTTAGCTTTGGTTTT+TGG | + | chr3.1:44630193-44630212 | MS.gene94954:CDS | 30.0% |
!!! | TGGTTTTAGCTTTGGTTTTT+GGG | + | chr3.1:44630194-44630213 | MS.gene94954:CDS | 30.0% |
!!! | TTTTGATGGTGTTTATAGGA+AGG | - | chr3.1:44629214-44629233 | None:intergenic | 30.0% |
AACAATGCCGTTAAACCTAA+CGG | - | chr3.1:44630170-44630189 | None:intergenic | 35.0% | |
CCTATGCTGAAATCAAACAA+TGG | + | chr3.1:44629773-44629792 | MS.gene94954:CDS | 35.0% | |
GAAATAGTATAGATCGCAAG+CGG | - | chr3.1:44629929-44629948 | None:intergenic | 35.0% | |
TTCTTCTTCTTCCCTTTCTT+CGG | - | chr3.1:44630049-44630068 | None:intergenic | 35.0% | |
! | ACCGTGATAATGTCAAAACA+CGG | + | chr3.1:44629551-44629570 | MS.gene94954:CDS | 35.0% |
! | CCATTGTTTGATTTCAGCAT+AGG | - | chr3.1:44629776-44629795 | None:intergenic | 35.0% |
!! | AAATGCTTTGAAAGCATCGT+CGG | - | chr3.1:44629672-44629691 | None:intergenic | 35.0% |
!!! | ACCGTGTTTTGACATTATCA+CGG | - | chr3.1:44629555-44629574 | None:intergenic | 35.0% |
!!! | TGTTGGTATGGTTTTAGCTT+TGG | + | chr3.1:44630186-44630205 | MS.gene94954:CDS | 35.0% |
!!! | TTATAGGAAGGTGTTTTGAG+AGG | - | chr3.1:44629202-44629221 | None:intergenic | 35.0% |
AAGCTTCACCAAATCACCAA+CGG | + | chr3.1:44629278-44629297 | MS.gene94954:CDS | 40.0% | |
GAAAGGGAAGAAGAAGAAGA+AGG | + | chr3.1:44630051-44630070 | MS.gene94954:CDS | 40.0% | |
GATTTCACCGTTCAGAATGA+CGG | + | chr3.1:44629836-44629855 | MS.gene94954:CDS | 40.0% | |
GTTAGGTTTAACGGCATTGT+TGG | + | chr3.1:44630169-44630188 | MS.gene94954:CDS | 40.0% | |
GTTGAAGACAAAACGTGTGA+CGG | + | chr3.1:44629871-44629890 | MS.gene94954:CDS | 40.0% | |
GTTTAACGGCATTGTTGGTA+TGG | + | chr3.1:44630174-44630193 | MS.gene94954:CDS | 40.0% | |
TCACCTTTAAACAACTCCTG+CGG | - | chr3.1:44629965-44629984 | None:intergenic | 40.0% | |
TTCAAAAACCTAACCATGGC+CGG | + | chr3.1:44629701-44629720 | MS.gene94954:CDS | 40.0% | |
! | GATAATGCCGATGATAGTGA+CGG | + | chr3.1:44630142-44630161 | MS.gene94954:CDS | 40.0% |
! | TAGATCTATTTTACCGGCCA+TGG | - | chr3.1:44629717-44629736 | None:intergenic | 40.0% |
! | TGAATGACGGAGATGTTGTA+AGG | - | chr3.1:44629464-44629483 | None:intergenic | 40.0% |
!! | AACGGAGCTGATTTGAATGA+CGG | - | chr3.1:44629477-44629496 | None:intergenic | 40.0% |
!! | GTTTTGACATTATCACGGTG+AGG | - | chr3.1:44629550-44629569 | None:intergenic | 40.0% |
!! | TTTTGAGAGGAGATCTTCCA+TGG | - | chr3.1:44629189-44629208 | None:intergenic | 40.0% |
!!! | GGTGATTTGGTGAAGCTTTT+TGG | - | chr3.1:44629276-44629295 | None:intergenic | 40.0% |
ATCGTAGTTGCTAGCACCTT+CGG | - | chr3.1:44629819-44629838 | None:intergenic | 45.0% | |
CTCTTCACCGTCATTCTGAA+CGG | - | chr3.1:44629846-44629865 | None:intergenic | 45.0% | |
CTTCCGCAGGAGTTGTTTAA+AGG | + | chr3.1:44629959-44629978 | MS.gene94954:CDS | 45.0% | |
GGATGATGATTCTGATGCTC+CGG | + | chr3.1:44630090-44630109 | MS.gene94954:CDS | 45.0% | |
TTCTTCTTCCCTTTCTTCGG+TGG | - | chr3.1:44630046-44630065 | None:intergenic | 45.0% | |
! | CTATTTTACCGGCCATGGTT+AGG | - | chr3.1:44629712-44629731 | None:intergenic | 45.0% |
! | TAGGGATAGGTAGTGGTTGA+AGG | - | chr3.1:44629102-44629121 | None:intergenic | 45.0% |
!! | GAGGGAGAGGATGTTTTTGA+TGG | - | chr3.1:44629228-44629247 | None:intergenic | 45.0% |
!! | TTCTAAGGTTCTTCTTCCGC+AGG | + | chr3.1:44629946-44629965 | MS.gene94954:CDS | 45.0% |
!!! | ACGGTGAGGTTTTGTTGACT+AGG | - | chr3.1:44629536-44629555 | None:intergenic | 45.0% |
!!! | AGGTTTTGTTGACTAGGTGC+TGG | - | chr3.1:44629530-44629549 | None:intergenic | 45.0% |
AATGCGGGTGATGTTGTGTG+CGG | - | chr3.1:44629054-44629073 | None:intergenic | 50.0% | |
GCATCAGAATCATCATCCGC+CGG | - | chr3.1:44630088-44630107 | None:intergenic | 50.0% | |
GGTTGAAGGTGGAGAGTTCA+GGG | - | chr3.1:44629088-44629107 | None:intergenic | 50.0% | |
TAATCCACCGTCGATAGCGT+CGG | - | chr3.1:44629633-44629652 | None:intergenic | 50.0% | |
TGAGAGGAGATCTTCCATGG+CGG | - | chr3.1:44629186-44629205 | None:intergenic | 50.0% | |
TGGTTGAAGGTGGAGAGTTC+AGG | - | chr3.1:44629089-44629108 | None:intergenic | 50.0% | |
! | ATGCATACGCTTGCTACCGA+AGG | + | chr3.1:44629800-44629819 | MS.gene94954:CDS | 50.0% |
! | GGATAGGTAGTGGTTGAAGG+TGG | - | chr3.1:44629099-44629118 | None:intergenic | 50.0% |
! | TTCGGCGCTGAAAACAACGA+CGG | + | chr3.1:44629398-44629417 | MS.gene94954:CDS | 50.0% |
! | TTTGTGAAGCGAGGTGGGTT+AGG | - | chr3.1:44629121-44629140 | None:intergenic | 50.0% |
!! | GTCGATTTGTGAAGCGAGGT+GGG | - | chr3.1:44629126-44629145 | None:intergenic | 50.0% |
!! | TGCTGTCGATTTGTGAAGCG+AGG | - | chr3.1:44629130-44629149 | None:intergenic | 50.0% |
!! | TGCTTTGAAAGCATCGTCGG+CGG | - | chr3.1:44629669-44629688 | None:intergenic | 50.0% |
!! | TGTCGATTTGTGAAGCGAGG+TGG | - | chr3.1:44629127-44629146 | None:intergenic | 50.0% |
!! | TGTTGACTAGGTGCTGGTGT+AGG | - | chr3.1:44629524-44629543 | None:intergenic | 50.0% |
!! | TTGTGAAGCGAGGTGGGTTA+GGG | - | chr3.1:44629120-44629139 | None:intergenic | 50.0% |
AACGGCGCCGTCACTATCAT+CGG | - | chr3.1:44630152-44630171 | None:intergenic | 55.0% | |
ACTTTCGCCGACGCTATCGA+CGG | + | chr3.1:44629623-44629642 | MS.gene94954:CDS | 55.0% | |
CACGTCCTCCTCGACTACTT+CGG | + | chr3.1:44629248-44629267 | MS.gene94954:CDS | 55.0% | |
CTTCCCTTTCTTCGGTGGCT+CGG | - | chr3.1:44630041-44630060 | None:intergenic | 55.0% | |
CTTTCTCCGACCACCAACCA+CGG | + | chr3.1:44628974-44628993 | MS.gene94954:CDS | 55.0% | |
GAAGAAGGTTGCTGATGCGC+CGG | + | chr3.1:44630066-44630085 | MS.gene94954:CDS | 55.0% | |
GACGGCGCCGTTAGGTTTAA+CGG | + | chr3.1:44630160-44630179 | MS.gene94954:CDS | 55.0% | |
GCCACAATGTACCAAGCCAC+CGG | + | chr3.1:44629314-44629333 | MS.gene94954:CDS | 55.0% | |
GGTGATGTTGACGAATCCCG+AGG | - | chr3.1:44629354-44629373 | None:intergenic | 55.0% | |
GGTGGTTGTGAGTATGGTGG+TGG | - | chr3.1:44629030-44629049 | None:intergenic | 55.0% | |
GTCAACATCACCGATCTCCG+CGG | + | chr3.1:44629362-44629381 | MS.gene94954:CDS | 55.0% | |
TGAAGCTCCGAGTCCTTCTC+CGG | + | chr3.1:44629982-44630001 | MS.gene94954:CDS | 55.0% | |
TGTAGGAGCTTCAGCTGCGA+CGG | - | chr3.1:44629507-44629526 | None:intergenic | 55.0% | |
TTCCCTTTCTTCGGTGGCTC+GGG | - | chr3.1:44630040-44630059 | None:intergenic | 55.0% | |
! | AGGGTGTTTGGCGAGAATGC+GGG | - | chr3.1:44629069-44629088 | None:intergenic | 55.0% |
! | ATGATAGTGACGGCGCCGTT+AGG | + | chr3.1:44630152-44630171 | MS.gene94954:CDS | 55.0% |
! | CAGGGTGTTTGGCGAGAATG+CGG | - | chr3.1:44629070-44629089 | None:intergenic | 55.0% |
! | GGTGGAGAGTTCAGGGTGTT+TGG | - | chr3.1:44629081-44629100 | None:intergenic | 55.0% |
! | GGTGGTGGTTGTGAGTATGG+TGG | - | chr3.1:44629033-44629052 | None:intergenic | 55.0% |
! | TGCGGTGGTGGTTGTGAGTA+TGG | - | chr3.1:44629036-44629055 | None:intergenic | 55.0% |
!! | AAGCGAGGTGGGTTAGGGAT+AGG | - | chr3.1:44629115-44629134 | None:intergenic | 55.0% |
!! | GAGCTGTGCCGTTGGTGATT+TGG | - | chr3.1:44629289-44629308 | None:intergenic | 55.0% |
!! | GCTTTGAAAGCATCGTCGGC+GGG | - | chr3.1:44629668-44629687 | None:intergenic | 55.0% |
!! | GGTGGCTTGGTACATTGTGG+CGG | - | chr3.1:44629315-44629334 | None:intergenic | 55.0% |
!! | GGTGGGTTAGGGATAGGTAG+TGG | - | chr3.1:44629109-44629128 | None:intergenic | 55.0% |
!! | GTGGTTGGTGGTCGGAGAAA+GGG | - | chr3.1:44628975-44628994 | None:intergenic | 55.0% |
!! | TTTTGGCGCCGAAGTAGTCG+AGG | - | chr3.1:44629259-44629278 | None:intergenic | 55.0% |
AACATCACCGATCTCCGCGG+CGG | + | chr3.1:44629365-44629384 | MS.gene94954:CDS | 60.0% | |
AGCTGCGACGGAGGGAAGAA+CGG | - | chr3.1:44629495-44629514 | None:intergenic | 60.0% | |
AGTAGTCGAGGAGGACGTGG+AGG | - | chr3.1:44629247-44629266 | None:intergenic | 60.0% | |
CGAAGTAGTCGAGGAGGACG+TGG | - | chr3.1:44629250-44629269 | None:intergenic | 60.0% | |
CGAATCCGACTTTACCGCCG+CGG | - | chr3.1:44629382-44629401 | None:intergenic | 60.0% | |
CGCGGCGGTAAAGTCGGATT+CGG | + | chr3.1:44629380-44629399 | MS.gene94954:CDS | 60.0% | |
CTCCCGAGCCACCGAAGAAA+GGG | + | chr3.1:44630035-44630054 | MS.gene94954:CDS | 60.0% | |
GACTTTACCGCCGCGGAGAT+CGG | - | chr3.1:44629375-44629394 | None:intergenic | 60.0% | |
GATCTCCGCGGCGGTAAAGT+CGG | + | chr3.1:44629374-44629393 | MS.gene94954:CDS | 60.0% | |
GGTGATGTTGTGTGCGGTGG+TGG | - | chr3.1:44629048-44629067 | None:intergenic | 60.0% | |
GTAGTCGAGGAGGACGTGGA+GGG | - | chr3.1:44629246-44629265 | None:intergenic | 60.0% | |
TCATCAGCAGCGTCATCGCC+CGG | - | chr3.1:44630124-44630143 | None:intergenic | 60.0% | |
TTCCATGGCGGCGTTGTCGA+CGG | - | chr3.1:44629174-44629193 | None:intergenic | 60.0% | |
TTGACGAATCCCGAGGAGCC+AGG | - | chr3.1:44629347-44629366 | None:intergenic | 60.0% | |
!! | CGTGGTTGGTGGTCGGAGAA+AGG | - | chr3.1:44628976-44628995 | None:intergenic | 60.0% |
!! | GCCGGTGGCTTGGTACATTG+TGG | - | chr3.1:44629318-44629337 | None:intergenic | 60.0% |
!! | TGATGCTCCGGCTGATTCGC+CGG | + | chr3.1:44630102-44630121 | MS.gene94954:CDS | 60.0% |
ACCAACCACGGCGGCGTTCA+CGG | + | chr3.1:44628986-44629005 | MS.gene94954:CDS | 65.0% | |
AGGAGCTTCAGCTGCGACGG+AGG | - | chr3.1:44629504-44629523 | None:intergenic | 65.0% | |
GAAGGTTGCTGATGCGCCGG+CGG | + | chr3.1:44630069-44630088 | MS.gene94954:CDS | 65.0% | |
GAATCCCGAGGAGCCAGGTG+CGG | - | chr3.1:44629342-44629361 | None:intergenic | 65.0% | |
GCGGGTGATGTTGTGTGCGG+TGG | - | chr3.1:44629051-44629070 | None:intergenic | 65.0% | |
GCTCCCGAGCCACCGAAGAA+AGG | + | chr3.1:44630034-44630053 | MS.gene94954:CDS | 65.0% | |
GGAGCTTCAGCTGCGACGGA+GGG | - | chr3.1:44629503-44629522 | None:intergenic | 65.0% | |
TCATCGCCCGGCGAATCAGC+CGG | - | chr3.1:44630112-44630131 | None:intergenic | 65.0% | |
TCTCCGACCACCAACCACGG+CGG | + | chr3.1:44628977-44628996 | MS.gene94954:CDS | 65.0% | |
TTCGCCGACGCTATCGACGG+TGG | + | chr3.1:44629626-44629645 | MS.gene94954:CDS | 65.0% | |
! | GCTGGTGCCGGAGAAGGACT+CGG | - | chr3.1:44629992-44630011 | None:intergenic | 65.0% |
! | TGGCGCCGAAGTAGTCGAGG+AGG | - | chr3.1:44629256-44629275 | None:intergenic | 65.0% |
!! | GATGCTCCGGCTGATTCGCC+GGG | + | chr3.1:44630103-44630122 | MS.gene94954:CDS | 65.0% |
AACCACGGCGGCGTTCACGG+CGG | + | chr3.1:44628989-44629008 | MS.gene94954:CDS | 70.0% | |
CGAGGAGGACGTGGAGGGAG+AGG | - | chr3.1:44629241-44629260 | None:intergenic | 70.0% | |
GGCGTTGTCGACGGCGCAGA+CGG | - | chr3.1:44629165-44629184 | None:intergenic | 70.0% | |
GTCGACGGCGCAGACGGTGA+TGG | - | chr3.1:44629159-44629178 | None:intergenic | 70.0% | |
GTGAACGCCGCCGTGGTTGG+TGG | - | chr3.1:44628987-44629006 | None:intergenic | 70.0% | |
TCCTTCTCCGGCACCAGCGC+CGG | + | chr3.1:44629994-44630013 | MS.gene94954:CDS | 70.0% | |
! | ACCAGCGCCGGAACCAGCTG+CGG | + | chr3.1:44630006-44630025 | MS.gene94954:CDS | 70.0% |
! | GCATCCGCCGCAGCTGGTTC+CGG | - | chr3.1:44630016-44630035 | None:intergenic | 70.0% |
!! | ACGCCGCCGTGGTTGGTGGT+CGG | - | chr3.1:44628983-44629002 | None:intergenic | 70.0% |
CAAGCCACCGGCACCGCACC+TGG | + | chr3.1:44629326-44629345 | MS.gene94954:CDS | 75.0% | |
CGAGGAGCCAGGTGCGGTGC+CGG | - | chr3.1:44629336-44629355 | None:intergenic | 75.0% | |
CGCCGTCGACAACGCCGCCA+TGG | + | chr3.1:44629169-44629188 | MS.gene94954:CDS | 75.0% | |
CGGCACCGCACCTGGCTCCT+CGG | + | chr3.1:44629334-44629353 | MS.gene94954:CDS | 75.0% | |
GCCGTGAACGCCGCCGTGGT+TGG | - | chr3.1:44628990-44629009 | None:intergenic | 75.0% | |
GGCACCGCACCTGGCTCCTC+GGG | + | chr3.1:44629335-44629354 | MS.gene94954:CDS | 75.0% | |
GGCGGCGAGAGCTGTGCCGT+TGG | - | chr3.1:44629297-44629316 | None:intergenic | 75.0% | |
! | AGCGCCGGAACCAGCTGCGG+CGG | + | chr3.1:44630009-44630028 | MS.gene94954:CDS | 75.0% |
!! | CAGGTGCGGTGCCGGTGGCT+TGG | - | chr3.1:44629328-44629347 | None:intergenic | 75.0% |
!! | GCTGGTTCCGGCGCTGGTGC+CGG | - | chr3.1:44630004-44630023 | None:intergenic | 75.0% |
!! | TCCGGCGCTGGTGCCGGAGA+AGG | - | chr3.1:44629998-44630017 | None:intergenic | 75.0% |
!! | TCGGGAGCATCCGCCGCAGC+TGG | - | chr3.1:44630022-44630041 | None:intergenic | 75.0% |
! | TGCCGCCGTGAACGCCGCCG+TGG | - | chr3.1:44628994-44629013 | None:intergenic | 80.0% |
!! | GCCGCAGCTGGTTCCGGCGC+TGG | - | chr3.1:44630010-44630029 | None:intergenic | 80.0% |
!! | GGAGCCAGGTGCGGTGCCGG+TGG | - | chr3.1:44629333-44629352 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 44628966 | 44630231 | 44628966 | ID=MS.gene94954 |
chr3.1 | mRNA | 44628966 | 44630231 | 44628966 | ID=MS.gene94954.t1;Parent=MS.gene94954 |
chr3.1 | exon | 44628966 | 44630231 | 44628966 | ID=MS.gene94954.t1.exon1;Parent=MS.gene94954.t1 |
chr3.1 | CDS | 44628966 | 44630231 | 44628966 | ID=cds.MS.gene94954.t1;Parent=MS.gene94954.t1 |
Gene Sequence |
Protein sequence |