Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97241.t1 | XP_013467000.1 | 99.2 | 354 | 3 | 0 | 1 | 354 | 168 | 521 | 3.70E-203 | 717.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97241.t1 | Q5XEP9 | 84.8 | 361 | 48 | 3 | 1 | 354 | 164 | 524 | 1.3e-177 | 623.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97241.t1 | G7ZZP2 | 99.2 | 354 | 3 | 0 | 1 | 354 | 168 | 521 | 2.6e-203 | 717.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene97241 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene049356 | MS.gene97241 | 0.815905 | 7.28E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene97241 | 0.804886 | 1.74E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene97241 | 0.825261 | 5.16E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene97241 | 0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene97241 | 0.810698 | 1.01E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene97241 | 0.848239 | 6.96E-60 | -1.69E-46 |
| MS.gene050432 | MS.gene97241 | 0.801364 | 9.32E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene97241 | 0.821865 | 3.22E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene97241 | 0.819543 | 1.10E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene97241 | 0.810648 | 1.04E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene97241 | 0.814348 | 1.61E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene97241 | 0.813 | 3.19E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene97241 | 0.840431 | 8.73E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene97241 | 0.840433 | 8.72E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene97241 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene97241 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene97241 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene97241 | 0.862337 | 5.44E-64 | -1.69E-46 |
| MS.gene053813 | MS.gene97241 | 0.853632 | 2.10E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene97241 | 0.832892 | 7.29E-56 | -1.69E-46 |
| MS.gene054123 | MS.gene97241 | 0.837994 | 3.74E-57 | -1.69E-46 |
| MS.gene054183 | MS.gene97241 | 0.805393 | 1.36E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene97241 | 0.80012 | 1.67E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene97241 | 0.82082 | 5.60E-53 | -1.69E-46 |
| MS.gene055390 | MS.gene97241 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene97241 | 0.805963 | 1.04E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene97241 | 0.82663 | 2.44E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene97241 | 0.819466 | 1.14E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene97241 | 0.819771 | 9.75E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene97241 | 0.825523 | 4.48E-54 | -1.69E-46 |
| MS.gene056931 | MS.gene97241 | 0.848122 | 7.50E-60 | -1.69E-46 |
| MS.gene056933 | MS.gene97241 | 0.845268 | 4.52E-59 | -1.69E-46 |
| MS.gene056935 | MS.gene97241 | 0.833205 | 6.10E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene97241 | 0.827931 | 1.19E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene97241 | 0.828896 | 6.97E-55 | -1.69E-46 |
| MS.gene057285 | MS.gene97241 | 0.856568 | 2.95E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene97241 | 0.82362 | 1.26E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene97241 | 0.825523 | 4.47E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene97241 | 0.822355 | 2.48E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene97241 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene97241 | 0.85598 | 4.38E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene97241 | 0.852581 | 4.20E-61 | -1.69E-46 |
| MS.gene057825 | MS.gene97241 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene97241 | 0.831395 | 1.71E-55 | -1.69E-46 |
| MS.gene058007 | MS.gene97241 | 0.822683 | 2.08E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene97241 | 0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene05842 | MS.gene97241 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene97241 | 0.857651 | 1.41E-62 | -1.69E-46 |
| MS.gene05886 | MS.gene97241 | 0.826334 | 2.87E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene97241 | 0.840776 | 7.09E-58 | -1.69E-46 |
| MS.gene058949 | MS.gene97241 | 0.80749 | 4.93E-50 | -1.69E-46 |
| MS.gene058995 | MS.gene97241 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene97241 | 0.847303 | 1.26E-59 | -1.69E-46 |
| MS.gene059141 | MS.gene97241 | 0.804612 | 1.99E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene97241 | 0.808627 | 2.82E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene97241 | 0.831244 | 1.86E-55 | -1.69E-46 |
| MS.gene059462 | MS.gene97241 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene97241 | 0.855096 | 7.93E-62 | -1.69E-46 |
| MS.gene059676 | MS.gene97241 | 0.817333 | 3.48E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene97241 | 0.850285 | 1.87E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene97241 | 0.841384 | 4.91E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene97241 | 0.840667 | 7.57E-58 | -1.69E-46 |
| MS.gene05984 | MS.gene97241 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene97241 | 0.823513 | 1.33E-53 | -1.69E-46 |
| MS.gene060559 | MS.gene97241 | 0.849393 | 3.33E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene97241 | 0.83131 | 1.79E-55 | -1.69E-46 |
| MS.gene061051 | MS.gene97241 | -0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene97241 | 0.803155 | 3.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97241.t1 | MTR_1g041085 | 99.153 | 354 | 3 | 0 | 1 | 354 | 168 | 521 | 0.0 | 739 |
| MS.gene97241.t1 | MTR_1g076430 | 91.243 | 354 | 30 | 1 | 1 | 354 | 162 | 514 | 0.0 | 690 |
| MS.gene97241.t1 | MTR_2g054940 | 85.470 | 351 | 51 | 0 | 1 | 351 | 161 | 511 | 0.0 | 636 |
| MS.gene97241.t1 | MTR_7g081695 | 83.626 | 342 | 44 | 1 | 1 | 342 | 161 | 490 | 0.0 | 593 |
| MS.gene97241.t1 | MTR_4g113280 | 80.912 | 351 | 56 | 1 | 1 | 351 | 150 | 489 | 0.0 | 590 |
| MS.gene97241.t1 | MTR_7g118170 | 76.791 | 349 | 78 | 2 | 1 | 346 | 181 | 529 | 0.0 | 569 |
| MS.gene97241.t1 | MTR_4g070270 | 74.128 | 344 | 88 | 1 | 2 | 345 | 160 | 502 | 0.0 | 543 |
| MS.gene97241.t1 | MTR_1g110930 | 69.628 | 349 | 105 | 1 | 3 | 351 | 149 | 496 | 0.0 | 519 |
| MS.gene97241.t1 | MTR_5g056510 | 68.481 | 349 | 109 | 1 | 3 | 351 | 149 | 496 | 1.24e-180 | 510 |
| MS.gene97241.t1 | MTR_6g032965 | 66.763 | 346 | 115 | 0 | 1 | 346 | 40 | 385 | 5.22e-177 | 497 |
| MS.gene97241.t1 | MTR_6g074880 | 67.241 | 348 | 113 | 1 | 1 | 347 | 123 | 470 | 6.32e-177 | 499 |
| MS.gene97241.t1 | MTR_4g054415 | 67.052 | 346 | 113 | 1 | 1 | 345 | 80 | 425 | 2.31e-175 | 494 |
| MS.gene97241.t1 | MTR_4g054630 | 67.052 | 346 | 113 | 1 | 1 | 345 | 121 | 466 | 2.42e-175 | 495 |
| MS.gene97241.t1 | MTR_3g105550 | 64.162 | 346 | 115 | 1 | 9 | 345 | 191 | 536 | 3.78e-172 | 490 |
| MS.gene97241.t1 | MTR_7g118160 | 65.749 | 327 | 99 | 3 | 26 | 344 | 97 | 418 | 1.16e-157 | 449 |
| MS.gene97241.t1 | MTR_2g013740 | 60.182 | 329 | 127 | 2 | 9 | 337 | 179 | 503 | 1.01e-140 | 409 |
| MS.gene97241.t1 | MTR_2g007020 | 55.491 | 346 | 152 | 2 | 2 | 346 | 108 | 452 | 3.72e-138 | 400 |
| MS.gene97241.t1 | MTR_2g436480 | 53.468 | 346 | 158 | 2 | 2 | 345 | 107 | 451 | 1.06e-136 | 397 |
| MS.gene97241.t1 | MTR_1g102290 | 46.199 | 342 | 183 | 1 | 3 | 343 | 143 | 484 | 3.55e-109 | 328 |
| MS.gene97241.t1 | MTR_4g054260 | 58.984 | 256 | 87 | 2 | 91 | 345 | 87 | 325 | 3.55e-104 | 309 |
| MS.gene97241.t1 | MTR_3g072980 | 45.748 | 341 | 184 | 1 | 3 | 343 | 144 | 483 | 2.97e-103 | 312 |
| MS.gene97241.t1 | MTR_3g072940 | 45.748 | 341 | 184 | 1 | 3 | 343 | 144 | 483 | 3.57e-103 | 312 |
| MS.gene97241.t1 | MTR_4g062190 | 43.626 | 353 | 177 | 3 | 6 | 342 | 96 | 442 | 4.44e-100 | 304 |
| MS.gene97241.t1 | MTR_4g062270 | 44.575 | 341 | 182 | 2 | 6 | 342 | 96 | 433 | 8.11e-100 | 303 |
| MS.gene97241.t1 | MTR_2g096210 | 42.535 | 355 | 184 | 3 | 6 | 344 | 96 | 446 | 3.24e-99 | 302 |
| MS.gene97241.t1 | MTR_6g051440 | 45.481 | 343 | 186 | 1 | 1 | 343 | 141 | 482 | 3.31e-98 | 300 |
| MS.gene97241.t1 | MTR_1g115560 | 41.176 | 357 | 186 | 3 | 7 | 342 | 98 | 451 | 1.46e-97 | 298 |
| MS.gene97241.t1 | MTR_4g062170 | 43.553 | 349 | 182 | 3 | 6 | 342 | 96 | 441 | 3.53e-95 | 291 |
| MS.gene97241.t1 | MTR_4g053905 | 67.296 | 159 | 52 | 0 | 187 | 345 | 1 | 159 | 4.96e-76 | 231 |
| MS.gene97241.t1 | MTR_7g086260 | 59.615 | 52 | 21 | 0 | 185 | 236 | 25 | 76 | 2.65e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97241.t1 | AT1G04220 | 84.765 | 361 | 48 | 3 | 1 | 354 | 164 | 524 | 0.0 | 646 |
| MS.gene97241.t1 | AT2G26640 | 83.191 | 351 | 59 | 0 | 1 | 351 | 159 | 509 | 0.0 | 629 |
| MS.gene97241.t1 | AT5G43760 | 84.722 | 360 | 49 | 3 | 1 | 354 | 170 | 529 | 0.0 | 627 |
| MS.gene97241.t1 | AT1G01120 | 73.256 | 344 | 91 | 1 | 3 | 345 | 183 | 526 | 0.0 | 552 |
| MS.gene97241.t1 | AT1G19440 | 74.194 | 341 | 87 | 1 | 3 | 343 | 173 | 512 | 0.0 | 543 |
| MS.gene97241.t1 | AT2G16280 | 72.141 | 341 | 94 | 1 | 3 | 343 | 169 | 508 | 0.0 | 535 |
| MS.gene97241.t1 | AT4G34510 | 70.640 | 344 | 99 | 2 | 3 | 345 | 143 | 485 | 0.0 | 530 |
| MS.gene97241.t1 | AT1G68530 | 67.622 | 349 | 112 | 1 | 3 | 351 | 150 | 497 | 2.99e-180 | 509 |
| MS.gene97241.t1 | AT1G25450 | 67.049 | 349 | 114 | 1 | 3 | 351 | 145 | 492 | 3.33e-178 | 503 |
| MS.gene97241.t1 | AT2G46720 | 65.217 | 345 | 116 | 2 | 4 | 345 | 122 | 465 | 1.13e-174 | 494 |
| MS.gene97241.t1 | AT3G10280 | 63.478 | 345 | 115 | 3 | 4 | 345 | 122 | 458 | 1.37e-166 | 473 |
| MS.gene97241.t1 | AT2G15090 | 65.789 | 342 | 116 | 1 | 4 | 345 | 139 | 479 | 2.23e-166 | 473 |
| MS.gene97241.t1 | AT2G26250 | 60.942 | 361 | 115 | 2 | 9 | 343 | 188 | 548 | 3.66e-163 | 468 |
| MS.gene97241.t1 | AT4G34250 | 65.015 | 343 | 119 | 1 | 3 | 345 | 146 | 487 | 6.96e-163 | 465 |
| MS.gene97241.t1 | AT4G34520 | 64.740 | 346 | 120 | 2 | 1 | 345 | 146 | 490 | 7.02e-163 | 465 |
| MS.gene97241.t1 | AT1G71160 | 52.047 | 342 | 162 | 2 | 2 | 343 | 107 | 446 | 6.66e-130 | 380 |
| MS.gene97241.t1 | AT5G49070 | 50.704 | 355 | 168 | 3 | 1 | 351 | 110 | 461 | 4.25e-127 | 373 |
| MS.gene97241.t1 | AT3G52160 | 53.374 | 326 | 121 | 2 | 9 | 334 | 42 | 336 | 6.50e-122 | 355 |
| MS.gene97241.t1 | AT3G52160 | 53.374 | 326 | 121 | 2 | 9 | 334 | 155 | 449 | 2.21e-120 | 355 |
| MS.gene97241.t1 | AT2G28630 | 44.000 | 350 | 182 | 3 | 7 | 342 | 97 | 446 | 2.25e-102 | 310 |
| MS.gene97241.t1 | AT2G28630 | 44.000 | 350 | 182 | 3 | 7 | 342 | 97 | 446 | 2.25e-102 | 310 |
| MS.gene97241.t1 | AT1G07720 | 44.602 | 352 | 178 | 3 | 7 | 342 | 97 | 447 | 1.79e-100 | 305 |
| MS.gene97241.t1 | AT1G07720 | 44.602 | 352 | 178 | 3 | 7 | 342 | 140 | 490 | 3.24e-100 | 306 |
| MS.gene97241.t1 | AT5G04530 | 42.566 | 343 | 188 | 3 | 6 | 342 | 98 | 437 | 1.89e-98 | 300 |
| MS.gene97241.t1 | AT1G68530 | 65.500 | 200 | 69 | 0 | 3 | 202 | 150 | 349 | 2.04e-95 | 289 |
| MS.gene97241.t1 | AT5G49070 | 47.549 | 204 | 107 | 0 | 1 | 204 | 110 | 313 | 1.76e-64 | 207 |
Find 79 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTAAGGATATTGGGATTT+TGG | 0.160476 | 1.3:+23899825 | MS.gene97241:CDS |
| CAAGGATTCTTCTCCTTTGC+AGG | 0.220809 | 1.3:-23902059 | None:intergenic |
| CCTAAAGTGTCAAAAGTTAT+TGG | 0.251553 | 1.3:+23902116 | MS.gene97241:CDS |
| TGCTGGTGGAAGAGCTGTTT+TGG | 0.263824 | 1.3:+23901815 | MS.gene97241:CDS |
| CCCATTCTAAAGAGACAATT+TGG | 0.276277 | 1.3:-23901447 | None:intergenic |
| CTATTCAGTGTCATCCTTGA+TGG | 0.309908 | 1.3:-23901882 | None:intergenic |
| TGGCAAATTGCATTTGGTTC+TGG | 0.315520 | 1.3:+23901990 | MS.gene97241:CDS |
| GAGTTATAACCTTGGTGGTA+TGG | 0.351468 | 1.3:+23899930 | MS.gene97241:CDS |
| ATAACACTAAACTGGTATTT+CGG | 0.355736 | 1.3:+23901402 | MS.gene97241:CDS |
| AAAACAAACATCACAACATT+AGG | 0.368559 | 1.3:+23901663 | MS.gene97241:CDS |
| AAAATCTTGATTTAAGTGAT+TGG | 0.369920 | 1.3:+23901850 | MS.gene97241:CDS |
| GAGGCGGTCGCGGGGCTTGT+TGG | 0.372909 | 1.3:-23901490 | None:intergenic |
| TGATTTAAGTGATTGGCATA+TGG | 0.379553 | 1.3:+23901857 | MS.gene97241:CDS |
| ACTACTAAGGCATATGAGTT+TGG | 0.381631 | 1.3:-23901366 | None:intergenic |
| GCTTCAGCCATACAAGGATT+AGG | 0.382875 | 1.3:-23899736 | None:intergenic |
| GCCAAATTGTCTCTTTAGAA+TGG | 0.383170 | 1.3:+23901446 | MS.gene97241:CDS |
| AGAACTTGGCAAATTGCATT+TGG | 0.384648 | 1.3:+23901984 | MS.gene97241:CDS |
| GGTGTGAAGGCTAAGGATAT+TGG | 0.386847 | 1.3:+23899817 | MS.gene97241:CDS |
| TAGTTCTTTGTGGTATGAAT+TGG | 0.397511 | 1.3:+23901923 | MS.gene97241:CDS |
| CTTCTCCGGCAACAGCCATT+AGG | 0.398163 | 1.3:-23901635 | None:intergenic |
| CGTCTGCACCTTTGTGCGTT+CGG | 0.398737 | 1.3:-23901542 | None:intergenic |
| GACACTTTAGGCACATGAAC+AGG | 0.403570 | 1.3:-23902104 | None:intergenic |
| GTGTGAAGGCTAAGGATATT+GGG | 0.408098 | 1.3:+23899818 | MS.gene97241:CDS |
| AATTTAAAATCAGGAATGTA+TGG | 0.409132 | 1.3:-23901768 | None:intergenic |
| AGGATGACACTGAATAGATT+TGG | 0.410289 | 1.3:+23901888 | MS.gene97241:CDS |
| GATGAGGTTCTTCAGAAAAC+TGG | 0.416638 | 1.3:+23899796 | MS.gene97241:CDS |
| AAAGACCTAATGGCTGTTGC+CGG | 0.418979 | 1.3:+23901630 | MS.gene97241:CDS |
| GGTGGTATGGGTTGTAGTGC+TGG | 0.422422 | 1.3:+23899943 | MS.gene97241:CDS |
| TCAAAAGCTAATTTAAAATC+AGG | 0.424969 | 1.3:-23901777 | None:intergenic |
| TGGAGAACATAACACTAAAC+TGG | 0.426255 | 1.3:+23901394 | MS.gene97241:CDS |
| TTAAGTGTAATAGTGCTGTT+TGG | 0.431690 | 1.3:+23902015 | MS.gene97241:CDS |
| GAAGCTGAAGAGGTTATGTT+TGG | 0.442456 | 1.3:+23899766 | MS.gene97241:CDS |
| ATCACTCTCAAAAGACCTAA+TGG | 0.453901 | 1.3:+23901620 | MS.gene97241:CDS |
| CCAAATTGTCTCTTTAGAAT+GGG | 0.459229 | 1.3:+23901447 | MS.gene97241:CDS |
| TTTATAATGATTCACAATCA+TGG | 0.459935 | 1.3:-23899890 | None:intergenic |
| TTCCTTGCTTCAGCCATACA+AGG | 0.461441 | 1.3:-23899742 | None:intergenic |
| GTGAATCATTATAAATTGAG+AGG | 0.462455 | 1.3:+23899898 | MS.gene97241:CDS |
| CTGCAAAGGAGAAGAATCCT+TGG | 0.462852 | 1.3:+23902060 | MS.gene97241:CDS |
| CTTTGTGCGTTCGGACGGTA+TGG | 0.463904 | 1.3:-23901533 | None:intergenic |
| AGTTATAACCTTGGTGGTAT+GGG | 0.464051 | 1.3:+23899931 | MS.gene97241:CDS |
| TACTACCTGTAGGAGCTGTT+TGG | 0.468027 | 1.3:-23899986 | None:intergenic |
| GGTCCCACCTAATCCTTGTA+TGG | 0.472798 | 1.3:+23899729 | MS.gene97241:CDS |
| ACACTTCAAGTAGTTCTTTG+TGG | 0.479476 | 1.3:+23901913 | MS.gene97241:CDS |
| GTTCTCCATGCTCACTACTA+AGG | 0.483955 | 1.3:-23901379 | None:intergenic |
| GGTCGCGGGGCTTGTTGGAG+AGG | 0.485143 | 1.3:-23901485 | None:intergenic |
| ATCTTGAGTTATAACCTTGG+TGG | 0.510802 | 1.3:+23899925 | MS.gene97241:CDS |
| TGCACCTTTGTGCGTTCGGA+CGG | 0.512292 | 1.3:-23901538 | None:intergenic |
| AATAAGAGCTGTTCCGACAT+AGG | 0.515411 | 1.3:-23901699 | None:intergenic |
| TGGCTTATACTGAAGCTAAA+GGG | 0.515795 | 1.3:+23901943 | MS.gene97241:CDS |
| TTGGCTTATACTGAAGCTAA+AGG | 0.523513 | 1.3:+23901942 | MS.gene97241:CDS |
| CCTTGCCAAACAGCTCCTAC+AGG | 0.533062 | 1.3:+23899981 | MS.gene97241:CDS |
| GAAAACTGGTGTGAAGGCTA+AGG | 0.535066 | 1.3:+23899810 | MS.gene97241:CDS |
| TCCGACATAGGTAGGACTAA+TGG | 0.554529 | 1.3:-23901687 | None:intergenic |
| TGAATCATTATAAATTGAGA+GGG | 0.566439 | 1.3:+23899899 | MS.gene97241:CDS |
| AGCAAGGAAAGAAGCTGAAG+AGG | 0.567920 | 1.3:+23899756 | MS.gene97241:CDS |
| TTCGGACGGTATGGACTAGT+TGG | 0.574228 | 1.3:-23901524 | None:intergenic |
| ATATGCCTTAGTAGTGAGCA+TGG | 0.583220 | 1.3:+23901374 | MS.gene97241:CDS |
| TATGTTTGGTGCTATTGATG+AGG | 0.584923 | 1.3:+23899780 | MS.gene97241:CDS |
| GAAGACTATTAATCCTGCAA+AGG | 0.592395 | 1.3:+23902046 | MS.gene97241:CDS |
| ATGGCAGAAAGAGAAGGTGT+TGG | 0.592954 | 1.3:-23899871 | None:intergenic |
| TCATGAATCTCATCAATCCA+AGG | 0.593092 | 1.3:-23902077 | None:intergenic |
| ACCATTAGTCCTACCTATGT+CGG | 0.593399 | 1.3:+23901686 | MS.gene97241:CDS |
| ATCCTTGTATGGCTGAAGCA+AGG | 0.593578 | 1.3:+23899740 | MS.gene97241:CDS |
| TCTTCAGAAAACTGGTGTGA+AGG | 0.595889 | 1.3:+23899804 | MS.gene97241:CDS |
| AGAGCTGTTCCGACATAGGT+AGG | 0.601625 | 1.3:-23901695 | None:intergenic |
| AATTGTCTCTTTAGAATGGG+AGG | 0.604004 | 1.3:+23901450 | MS.gene97241:CDS |
| AATATCTTGAGTTATAACCT+TGG | 0.611816 | 1.3:+23899922 | MS.gene97241:CDS |
| ACAATCATGGCAGAAAGAGA+AGG | 0.617963 | 1.3:-23899877 | None:intergenic |
| TCAGCCATACAAGGATTAGG+TGG | 0.618571 | 1.3:-23899733 | None:intergenic |
| TTTGATCGGAGGCGGTCGCG+GGG | 0.627458 | 1.3:-23901498 | None:intergenic |
| TTCTTGAAAGACGCAGCCGT+AGG | 0.629235 | 1.3:-23901571 | None:intergenic |
| ATTGGCATATGGAACCATCA+AGG | 0.630727 | 1.3:+23901868 | MS.gene97241:CDS |
| CCTGTAGGAGCTGTTTGGCA+AGG | 0.633073 | 1.3:-23899981 | None:intergenic |
| CAGCCATACAAGGATTAGGT+GGG | 0.655239 | 1.3:-23899732 | None:intergenic |
| CATACCGTCCGAACGCACAA+AGG | 0.660077 | 1.3:+23901534 | MS.gene97241:CDS |
| CTTATACTGAAGCTAAAGGG+AGG | 0.665669 | 1.3:+23901946 | MS.gene97241:CDS |
| GGTGCAGACGACAAATCCTA+CGG | 0.666672 | 1.3:+23901555 | MS.gene97241:CDS |
| GAAGACAACACAAAGCAAGT+CGG | 0.704242 | 1.3:+23901594 | MS.gene97241:CDS |
| CACTACAACCCATACCACCA+AGG | 0.705198 | 1.3:-23899939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATATATAAATAAAA+TGG | - | chr1.3:23901197-23901216 | None:intergenic | 0.0% |
| !!! | CATAATATTTTATAAACAAA+AGG | - | chr1.3:23901065-23901084 | None:intergenic | 10.0% |
| !!! | CTTTTGTTTATAAAATATTA+TGG | + | chr1.3:23901063-23901082 | MS.gene97241:intron | 10.0% |
| !!! | GATGAAATAATATATAGTTT+TGG | - | chr1.3:23900038-23900057 | None:intergenic | 15.0% |
| !!! | TAATATATAGTTTTGGATTT+TGG | - | chr1.3:23900031-23900050 | None:intergenic | 15.0% |
| !!! | TTATAAAATATTATGGGTTA+TGG | + | chr1.3:23901070-23901089 | MS.gene97241:intron | 15.0% |
| !! | AAAATCTTGATTTAAGTGAT+TGG | + | chr1.3:23901850-23901869 | MS.gene97241:CDS | 20.0% |
| !! | AAACCTAGTTATTATTATGT+AGG | - | chr1.3:23900263-23900282 | None:intergenic | 20.0% |
| !! | AAAGGAAAAAATAAACTAGT+TGG | - | chr1.3:23901047-23901066 | None:intergenic | 20.0% |
| !! | AACCTAGTTATTATTATGTA+GGG | - | chr1.3:23900262-23900281 | None:intergenic | 20.0% |
| !! | AATAAAAGATCCTAAAAATG+GGG | - | chr1.3:23900572-23900591 | None:intergenic | 20.0% |
| !! | AATTTAGTAAATGTGTTCAA+AGG | + | chr1.3:23900465-23900484 | MS.gene97241:intron | 20.0% |
| !! | CAATAAAAGATCCTAAAAAT+GGG | - | chr1.3:23900573-23900592 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAAGAGATT+GGG | + | chr1.3:23900600-23900619 | MS.gene97241:intron | 20.0% |
| !! | GTATAATCTTTATCAAATGA+TGG | + | chr1.3:23900857-23900876 | MS.gene97241:intron | 20.0% |
| !! | TATTATAAACCAAGAAGAAA+TGG | - | chr1.3:23900358-23900377 | None:intergenic | 20.0% |
| !! | TGAATCATTATAAATTGAGA+GGG | + | chr1.3:23899899-23899918 | MS.gene97241:CDS | 20.0% |
| !! | TTTATAATGATTCACAATCA+TGG | - | chr1.3:23899893-23899912 | None:intergenic | 20.0% |
| !!! | AATTTAAAATCAGGAATGTA+TGG | - | chr1.3:23901771-23901790 | None:intergenic | 20.0% |
| !!! | TCAAAAGCTAATTTAAAATC+AGG | - | chr1.3:23901780-23901799 | None:intergenic | 20.0% |
| !!! | TTTAAAATCTAAACTTGTCA+TGG | - | chr1.3:23901002-23901021 | None:intergenic | 20.0% |
| ! | AAAACAAACATCACAACATT+AGG | + | chr1.3:23901663-23901682 | MS.gene97241:CDS | 25.0% |
| ! | AAATAAATTATATCCACGAG+TGG | - | chr1.3:23900522-23900541 | None:intergenic | 25.0% |
| ! | AATATCTTGAGTTATAACCT+TGG | + | chr1.3:23899922-23899941 | MS.gene97241:CDS | 25.0% |
| ! | ACCTAGTTATTATTATGTAG+GGG | - | chr1.3:23900261-23900280 | None:intergenic | 25.0% |
| ! | AGATATAATATACTACCTGT+AGG | - | chr1.3:23899999-23900018 | None:intergenic | 25.0% |
| ! | ATAACACTAAACTGGTATTT+CGG | + | chr1.3:23901402-23901421 | MS.gene97241:CDS | 25.0% |
| ! | CCATGATAAACAATGTATAT+AGG | + | chr1.3:23901338-23901357 | MS.gene97241:intron | 25.0% |
| ! | CCTATATACATTGTTTATCA+TGG | - | chr1.3:23901341-23901360 | None:intergenic | 25.0% |
| ! | GCAATAAAAGATCCTAAAAA+TGG | - | chr1.3:23900574-23900593 | None:intergenic | 25.0% |
| ! | GCTTAAAAGTTAAAAGAGAT+TGG | + | chr1.3:23900599-23900618 | MS.gene97241:intron | 25.0% |
| ! | GTGAATCATTATAAATTGAG+AGG | + | chr1.3:23899898-23899917 | MS.gene97241:CDS | 25.0% |
| ! | TTAAAAAAGGTGATAGAACT+TGG | + | chr1.3:23901970-23901989 | MS.gene97241:CDS | 25.0% |
| !! | TTATTGTGGAATATGGATTA+TGG | - | chr1.3:23901233-23901252 | None:intergenic | 25.0% |
| !!! | TTAAAACATTTGATTTGCAC+AGG | + | chr1.3:23901017-23901036 | MS.gene97241:intron | 25.0% |
| AAATGTGATTGGATTGAACT+AGG | - | chr1.3:23900080-23900099 | None:intergenic | 30.0% | |
| AATTCAAGTCCATTTCTTCT+TGG | + | chr1.3:23900346-23900365 | MS.gene97241:intron | 30.0% | |
| ACAACATGTCAACAAAAACA+AGG | - | chr1.3:23900746-23900765 | None:intergenic | 30.0% | |
| ATCTGATCAACAAATGTGAT+TGG | - | chr1.3:23900091-23900110 | None:intergenic | 30.0% | |
| CAACATGTCAACAAAAACAA+GGG | - | chr1.3:23900745-23900764 | None:intergenic | 30.0% | |
| CCATATTCCACAATAACAAT+TGG | + | chr1.3:23901237-23901256 | MS.gene97241:intron | 30.0% | |
| TACAACCTGTACATTTGAAT+TGG | - | chr1.3:23900635-23900654 | None:intergenic | 30.0% | |
| TAGTTCTTTGTGGTATGAAT+TGG | + | chr1.3:23901923-23901942 | MS.gene97241:CDS | 30.0% | |
| TCCCCTACATAATAATAACT+AGG | + | chr1.3:23900257-23900276 | MS.gene97241:intron | 30.0% | |
| TGATTTAAGTGATTGGCATA+TGG | + | chr1.3:23901857-23901876 | MS.gene97241:CDS | 30.0% | |
| TTCAAATGTACAGGTTGTAA+AGG | + | chr1.3:23900636-23900655 | MS.gene97241:intron | 30.0% | |
| TTCTTGTAGTCTTCTGTATT+AGG | - | chr1.3:23900328-23900347 | None:intergenic | 30.0% | |
| TTTCATCAAACGACTGTAAT+TGG | - | chr1.3:23900797-23900816 | None:intergenic | 30.0% | |
| ! | ATTTGTTGATCAGATGTGAT+TGG | + | chr1.3:23900096-23900115 | MS.gene97241:intron | 30.0% |
| ! | CAATTGGATCACAAGTTTTT+CGG | + | chr1.3:23901253-23901272 | MS.gene97241:intron | 30.0% |
| ! | CCAATAACTTTTGACACTTT+AGG | - | chr1.3:23902119-23902138 | None:intergenic | 30.0% |
| ! | CCAATTGTTATTGTGGAATA+TGG | - | chr1.3:23901240-23901259 | None:intergenic | 30.0% |
| ! | CCTAAAGTGTCAAAAGTTAT+TGG | + | chr1.3:23902116-23902135 | MS.gene97241:CDS | 30.0% |
| ! | TTAAGTGTAATAGTGCTGTT+TGG | + | chr1.3:23902015-23902034 | MS.gene97241:CDS | 30.0% |
| ! | TTGTGATCCAATTGTTATTG+TGG | - | chr1.3:23901247-23901266 | None:intergenic | 30.0% |
| !! | AACTTTGGAGGGTATTAATT+AGG | - | chr1.3:23900692-23900711 | None:intergenic | 30.0% |
| !! | CCAAATTGTCTCTTTAGAAT+GGG | + | chr1.3:23901447-23901466 | MS.gene97241:CDS | 30.0% |
| !! | GGATTTGTTGACAAGATTTA+AGG | - | chr1.3:23901176-23901195 | None:intergenic | 30.0% |
| AAAACAAGGGTCCATAACTA+TGG | - | chr1.3:23900732-23900751 | None:intergenic | 35.0% | |
| AAACAAGGGTCCATAACTAT+GGG | - | chr1.3:23900731-23900750 | None:intergenic | 35.0% | |
| ACAACAACATGTTAGAGTCT+TGG | - | chr1.3:23900386-23900405 | None:intergenic | 35.0% | |
| ACACTTCAAGTAGTTCTTTG+TGG | + | chr1.3:23901913-23901932 | MS.gene97241:CDS | 35.0% | |
| ACTACTAAGGCATATGAGTT+TGG | - | chr1.3:23901369-23901388 | None:intergenic | 35.0% | |
| AGAACTTGGCAAATTGCATT+TGG | + | chr1.3:23901984-23902003 | MS.gene97241:CDS | 35.0% | |
| AGGATGACACTGAATAGATT+TGG | + | chr1.3:23901888-23901907 | MS.gene97241:CDS | 35.0% | |
| ATCACTCTCAAAAGACCTAA+TGG | + | chr1.3:23901620-23901639 | MS.gene97241:CDS | 35.0% | |
| ATCCAAGTTTCCCATAGTTA+TGG | + | chr1.3:23900718-23900737 | MS.gene97241:intron | 35.0% | |
| ATCTTGAGTTATAACCTTGG+TGG | + | chr1.3:23899925-23899944 | MS.gene97241:CDS | 35.0% | |
| CTACGTGCATGTTAAGATTT+AGG | + | chr1.3:23900490-23900509 | MS.gene97241:intron | 35.0% | |
| CTGATCCAATTCAAATGTAC+AGG | + | chr1.3:23900627-23900646 | MS.gene97241:intron | 35.0% | |
| GAAGACTATTAATCCTGCAA+AGG | + | chr1.3:23902046-23902065 | MS.gene97241:CDS | 35.0% | |
| GCTAAAGGGAGGATTAAAAA+AGG | + | chr1.3:23901957-23901976 | MS.gene97241:CDS | 35.0% | |
| GTCGTTTGATGAAAATCAGA+CGG | + | chr1.3:23900803-23900822 | MS.gene97241:intron | 35.0% | |
| TATGGTTATCCAACTAGCTA+GGG | + | chr1.3:23901088-23901107 | MS.gene97241:intron | 35.0% | |
| TCAAGTCAAAGAATCTTCTG+CGG | - | chr1.3:23900236-23900255 | None:intergenic | 35.0% | |
| TCATGAATCTCATCAATCCA+AGG | - | chr1.3:23902080-23902099 | None:intergenic | 35.0% | |
| TGGAGAACATAACACTAAAC+TGG | + | chr1.3:23901394-23901413 | MS.gene97241:CDS | 35.0% | |
| TGGCTTATACTGAAGCTAAA+GGG | + | chr1.3:23901943-23901962 | MS.gene97241:CDS | 35.0% | |
| TTATGGTTATCCAACTAGCT+AGG | + | chr1.3:23901087-23901106 | MS.gene97241:intron | 35.0% | |
| TTGGCTTATACTGAAGCTAA+AGG | + | chr1.3:23901942-23901961 | MS.gene97241:CDS | 35.0% | |
| ! | AGTTATAACCTTGGTGGTAT+GGG | + | chr1.3:23899931-23899950 | MS.gene97241:CDS | 35.0% |
| ! | ATTTAGGTATTTTCCACTCG+TGG | + | chr1.3:23900506-23900525 | MS.gene97241:intron | 35.0% |
| ! | CATTTTTGTATTCATGCTGG+TGG | + | chr1.3:23901801-23901820 | MS.gene97241:CDS | 35.0% |
| ! | CCCATTCTAAAGAGACAATT+TGG | - | chr1.3:23901450-23901469 | None:intergenic | 35.0% |
| ! | GAGCATTTTTGTATTCATGC+TGG | + | chr1.3:23901798-23901817 | MS.gene97241:CDS | 35.0% |
| ! | GCCAAATTGTCTCTTTAGAA+TGG | + | chr1.3:23901446-23901465 | MS.gene97241:CDS | 35.0% |
| !! | AATTGTCTCTTTAGAATGGG+AGG | + | chr1.3:23901450-23901469 | MS.gene97241:CDS | 35.0% |
| !! | TATGTTTGGTGCTATTGATG+AGG | + | chr1.3:23899780-23899799 | MS.gene97241:CDS | 35.0% |
| !! | TTGGAGGGTATTAATTAGGT+TGG | - | chr1.3:23900688-23900707 | None:intergenic | 35.0% |
| !!! | GGACTAGTTGGTATTTTGAT+CGG | - | chr1.3:23901515-23901534 | None:intergenic | 35.0% |
| !!! | TCGGAACAGCTCTTATTTTT+CGG | + | chr1.3:23901705-23901724 | MS.gene97241:CDS | 35.0% |
| AACTTGGATGCATGGAACTT+TGG | - | chr1.3:23900707-23900726 | None:intergenic | 40.0% | |
| AATAAGAGCTGTTCCGACAT+AGG | - | chr1.3:23901702-23901721 | None:intergenic | 40.0% | |
| AATCTTCTGCGGTCTGAATT+AGG | - | chr1.3:23900225-23900244 | None:intergenic | 40.0% | |
| ACAATCATGGCAGAAAGAGA+AGG | - | chr1.3:23899880-23899899 | None:intergenic | 40.0% | |
| ACCATTAGTCCTACCTATGT+CGG | + | chr1.3:23901686-23901705 | MS.gene97241:CDS | 40.0% | |
| ATATGCCTTAGTAGTGAGCA+TGG | + | chr1.3:23901374-23901393 | MS.gene97241:CDS | 40.0% | |
| ATTGGCATATGGAACCATCA+AGG | + | chr1.3:23901868-23901887 | MS.gene97241:CDS | 40.0% | |
| CTATTCAGTGTCATCCTTGA+TGG | - | chr1.3:23901885-23901904 | None:intergenic | 40.0% | |
| CTTATACTGAAGCTAAAGGG+AGG | + | chr1.3:23901946-23901965 | MS.gene97241:CDS | 40.0% | |
| GAAGACAACACAAAGCAAGT+CGG | + | chr1.3:23901594-23901613 | MS.gene97241:CDS | 40.0% | |
| GAAGCTGAAGAGGTTATGTT+TGG | + | chr1.3:23899766-23899785 | MS.gene97241:CDS | 40.0% | |
| GATGAGGTTCTTCAGAAAAC+TGG | + | chr1.3:23899796-23899815 | MS.gene97241:CDS | 40.0% | |
| GTACAGGTTGTAAAGGTTGT+TGG | + | chr1.3:23900643-23900662 | MS.gene97241:intron | 40.0% | |
| GTCCATAACTATGGGAAACT+TGG | - | chr1.3:23900723-23900742 | None:intergenic | 40.0% | |
| GTGTGAAGGCTAAGGATATT+GGG | + | chr1.3:23899818-23899837 | MS.gene97241:CDS | 40.0% | |
| TCACAACAGTTCGTTGAGAT+TGG | - | chr1.3:23900192-23900211 | None:intergenic | 40.0% | |
| TCTCAACGAACTGTTGTGAT+TGG | + | chr1.3:23900193-23900212 | MS.gene97241:intron | 40.0% | |
| TCTTCAGAAAACTGGTGTGA+AGG | + | chr1.3:23899804-23899823 | MS.gene97241:CDS | 40.0% | |
| ! | AACTTGTTTCCCTAGCTAGT+TGG | - | chr1.3:23901100-23901119 | None:intergenic | 40.0% |
| ! | GAGTTATAACCTTGGTGGTA+TGG | + | chr1.3:23899930-23899949 | MS.gene97241:CDS | 40.0% |
| ! | GGCTAAGGATATTGGGATTT+TGG | + | chr1.3:23899825-23899844 | MS.gene97241:CDS | 40.0% |
| ! | TCGTAGTTGTTGACTGAGAT+TGG | - | chr1.3:23900289-23900308 | None:intergenic | 40.0% |
| ! | TGGCAAATTGCATTTGGTTC+TGG | + | chr1.3:23901990-23902009 | MS.gene97241:CDS | 40.0% |
| !! | AAGAGCTGTTTTGGATGAGT+TGG | + | chr1.3:23901824-23901843 | MS.gene97241:CDS | 40.0% |
| !!! | CGGAACAGCTCTTATTTTTC+GGG | + | chr1.3:23901706-23901725 | MS.gene97241:CDS | 40.0% |
| !!! | CTAGTTGGTATTTTGATCGG+AGG | - | chr1.3:23901512-23901531 | None:intergenic | 40.0% |
| !!! | GCTCTTATTTTTCGGGACAT+TGG | + | chr1.3:23901713-23901732 | MS.gene97241:CDS | 40.0% |
| !!! | GGTTGTTGGAAGTTTTTTGC+TGG | + | chr1.3:23900657-23900676 | MS.gene97241:intron | 40.0% |
| !!! | GTTTGTTTTGAGTGCTTCTC+CGG | - | chr1.3:23901652-23901671 | None:intergenic | 40.0% |
| AAAGACCTAATGGCTGTTGC+CGG | + | chr1.3:23901630-23901649 | MS.gene97241:CDS | 45.0% | |
| AGCAAGGAAAGAAGCTGAAG+AGG | + | chr1.3:23899756-23899775 | MS.gene97241:CDS | 45.0% | |
| ATCCTTGTATGGCTGAAGCA+AGG | + | chr1.3:23899740-23899759 | MS.gene97241:CDS | 45.0% | |
| ATTTATGCCAAGCCGCCTAA+GGG | + | chr1.3:23900538-23900557 | MS.gene97241:intron | 45.0% | |
| CAAGGATTCTTCTCCTTTGC+AGG | - | chr1.3:23902062-23902081 | None:intergenic | 45.0% | |
| CAGCCATACAAGGATTAGGT+GGG | - | chr1.3:23899735-23899754 | None:intergenic | 45.0% | |
| CTATGGGAAACTTGGATGCA+TGG | - | chr1.3:23900715-23900734 | None:intergenic | 45.0% | |
| CTGCAAAGGAGAAGAATCCT+TGG | + | chr1.3:23902060-23902079 | MS.gene97241:CDS | 45.0% | |
| GAAAACTGGTGTGAAGGCTA+AGG | + | chr1.3:23899810-23899829 | MS.gene97241:CDS | 45.0% | |
| GACACTTTAGGCACATGAAC+AGG | - | chr1.3:23902107-23902126 | None:intergenic | 45.0% | |
| GCTTCAGCCATACAAGGATT+AGG | - | chr1.3:23899739-23899758 | None:intergenic | 45.0% | |
| GGTGTGAAGGCTAAGGATAT+TGG | + | chr1.3:23899817-23899836 | MS.gene97241:CDS | 45.0% | |
| GTTCTCCATGCTCACTACTA+AGG | - | chr1.3:23901382-23901401 | None:intergenic | 45.0% | |
| TACTACCTGTAGGAGCTGTT+TGG | - | chr1.3:23899989-23900008 | None:intergenic | 45.0% | |
| TATTTATGCCAAGCCGCCTA+AGG | + | chr1.3:23900537-23900556 | MS.gene97241:intron | 45.0% | |
| TCAGCCATACAAGGATTAGG+TGG | - | chr1.3:23899736-23899755 | None:intergenic | 45.0% | |
| TCCGACATAGGTAGGACTAA+TGG | - | chr1.3:23901690-23901709 | None:intergenic | 45.0% | |
| TGGATGCATGGAACTTTGGA+GGG | - | chr1.3:23900703-23900722 | None:intergenic | 45.0% | |
| TTCCTTGCTTCAGCCATACA+AGG | - | chr1.3:23899745-23899764 | None:intergenic | 45.0% | |
| TTGGATGCATGGAACTTTGG+AGG | - | chr1.3:23900704-23900723 | None:intergenic | 45.0% | |
| ! | ATGGCAGAAAGAGAAGGTGT+TGG | - | chr1.3:23899874-23899893 | None:intergenic | 45.0% |
| !!! | GTTGGTATTTTGATCGGAGG+CGG | - | chr1.3:23901509-23901528 | None:intergenic | 45.0% |
| !!! | TTTTGTTTATAAAATATTAT+GGG | + | chr1.3:23901064-23901083 | MS.gene97241:intron | 5.0% |
| AGAGCTGTTCCGACATAGGT+AGG | - | chr1.3:23901698-23901717 | None:intergenic | 50.0% | |
| CACTACAACCCATACCACCA+AGG | - | chr1.3:23899942-23899961 | None:intergenic | 50.0% | |
| GGTCCCACCTAATCCTTGTA+TGG | + | chr1.3:23899729-23899748 | MS.gene97241:CDS | 50.0% | |
| GGTGCAGACGACAAATCCTA+CGG | + | chr1.3:23901555-23901574 | MS.gene97241:CDS | 50.0% | |
| TTCTTGAAAGACGCAGCCGT+AGG | - | chr1.3:23901574-23901593 | None:intergenic | 50.0% | |
| TTTATGCCAAGCCGCCTAAG+GGG | + | chr1.3:23900539-23900558 | MS.gene97241:intron | 50.0% | |
| ! | TGCTGGTGGAAGAGCTGTTT+TGG | + | chr1.3:23901815-23901834 | MS.gene97241:CDS | 50.0% |
| !! | GGGAATGGAGCCCCATTTTT+AGG | + | chr1.3:23900559-23900578 | MS.gene97241:intron | 50.0% |
| !! | TTCGGACGGTATGGACTAGT+TGG | - | chr1.3:23901527-23901546 | None:intergenic | 50.0% |
| AATGGGGCTCCATTCCCCTT+AGG | - | chr1.3:23900556-23900575 | None:intergenic | 55.0% | |
| CATACCGTCCGAACGCACAA+AGG | + | chr1.3:23901534-23901553 | MS.gene97241:CDS | 55.0% | |
| CCTGTAGGAGCTGTTTGGCA+AGG | - | chr1.3:23899984-23900003 | None:intergenic | 55.0% | |
| CCTTGCCAAACAGCTCCTAC+AGG | + | chr1.3:23899981-23900000 | MS.gene97241:CDS | 55.0% | |
| CGTCTGCACCTTTGTGCGTT+CGG | - | chr1.3:23901545-23901564 | None:intergenic | 55.0% | |
| CTTCTCCGGCAACAGCCATT+AGG | - | chr1.3:23901638-23901657 | None:intergenic | 55.0% | |
| CTTTGTGCGTTCGGACGGTA+TGG | - | chr1.3:23901536-23901555 | None:intergenic | 55.0% | |
| TGCACCTTTGTGCGTTCGGA+CGG | - | chr1.3:23901541-23901560 | None:intergenic | 55.0% | |
| ! | GGTGGTATGGGTTGTAGTGC+TGG | + | chr1.3:23899943-23899962 | MS.gene97241:CDS | 55.0% |
| !! | ATTTTGATCGGAGGCGGTCG+CGG | - | chr1.3:23901503-23901522 | None:intergenic | 55.0% |
| TCCATTCCCCTTAGGCGGCT+TGG | - | chr1.3:23900548-23900567 | None:intergenic | 60.0% | |
| ! | TTTTGATCGGAGGCGGTCGC+GGG | - | chr1.3:23901502-23901521 | None:intergenic | 60.0% |
| GCCAAGCCGCCTAAGGGGAA+TGG | + | chr1.3:23900544-23900563 | MS.gene97241:intron | 65.0% | |
| GGGGCTCCATTCCCCTTAGG+CGG | - | chr1.3:23900553-23900572 | None:intergenic | 65.0% | |
| TTTGATCGGAGGCGGTCGCG+GGG | - | chr1.3:23901501-23901520 | None:intergenic | 65.0% | |
| !! | GGTCGCGGGGCTTGTTGGAG+AGG | - | chr1.3:23901488-23901507 | None:intergenic | 70.0% |
| GAGGCGGTCGCGGGGCTTGT+TGG | - | chr1.3:23901493-23901512 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 23899724 | 23902145 | 23899724 | ID=MS.gene97241 |
| chr1.3 | mRNA | 23899724 | 23902145 | 23899724 | ID=MS.gene97241.t1;Parent=MS.gene97241 |
| chr1.3 | exon | 23899724 | 23900002 | 23899724 | ID=MS.gene97241.t1.exon1;Parent=MS.gene97241.t1 |
| chr1.3 | CDS | 23899724 | 23900002 | 23899724 | ID=cds.MS.gene97241.t1;Parent=MS.gene97241.t1 |
| chr1.3 | exon | 23901360 | 23902145 | 23901360 | ID=MS.gene97241.t1.exon2;Parent=MS.gene97241.t1 |
| chr1.3 | CDS | 23901360 | 23902145 | 23901360 | ID=cds.MS.gene97241.t1;Parent=MS.gene97241.t1 |
| Gene Sequence |
| Protein sequence |
