Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99462.t1 | XP_003604815.1 | 95.4 | 349 | 15 | 1 | 3 | 350 | 2 | 350 | 1.40E-186 | 662.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99462.t1 | Q9LYX1 | 32.4 | 225 | 115 | 11 | 45 | 242 | 45 | 259 | 1.1e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99462.t1 | G7JR99 | 95.4 | 349 | 15 | 1 | 3 | 350 | 2 | 350 | 1.0e-186 | 662.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene99462 | 0.844208 | 8.72E-59 | -1.69E-46 |
| MS.gene049501 | MS.gene99462 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene049647 | MS.gene99462 | 0.814426 | 1.55E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene99462 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene99462 | 0.839485 | 1.54E-57 | -1.69E-46 |
| MS.gene050226 | MS.gene99462 | 0.826566 | 2.53E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene99462 | 0.833781 | 4.38E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene99462 | 0.823899 | 1.08E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene99462 | 0.833198 | 6.12E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene99462 | -0.827019 | 1.97E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene99462 | 0.835613 | 1.52E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene99462 | 0.833141 | 6.32E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene99462 | 0.836508 | 8.98E-57 | -1.69E-46 |
| MS.gene050762 | MS.gene99462 | 0.865197 | 7.03E-65 | -1.69E-46 |
| MS.gene050763 | MS.gene99462 | 0.86649 | 2.75E-65 | -1.69E-46 |
| MS.gene050787 | MS.gene99462 | 0.839088 | 1.95E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene99462 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene050824 | MS.gene99462 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene99462 | 0.834922 | 2.26E-56 | -1.69E-46 |
| MS.gene050959 | MS.gene99462 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene99462 | -0.819701 | 1.01E-52 | -1.69E-46 |
| MS.gene051210 | MS.gene99462 | 0.814422 | 1.55E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene99462 | 0.821861 | 3.22E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene99462 | 0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene99462 | 0.819061 | 1.42E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene99462 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene99462 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene99462 | 0.809568 | 1.77E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene99462 | 0.806489 | 8.02E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene99462 | 0.836622 | 8.40E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene99462 | 0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene99462 | 0.807943 | 3.95E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene99462 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene99462 | 0.869752 | 2.45E-66 | -1.69E-46 |
| MS.gene054467 | MS.gene99462 | 0.814999 | 1.16E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene99462 | 0.835039 | 2.12E-56 | -1.69E-46 |
| MS.gene054472 | MS.gene99462 | 0.814827 | 1.26E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene99462 | 0.823306 | 1.49E-53 | -1.69E-46 |
| MS.gene054542 | MS.gene99462 | 0.823707 | 1.20E-53 | -1.69E-46 |
| MS.gene05462 | MS.gene99462 | 0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene99462 | 0.830922 | 2.23E-55 | -1.69E-46 |
| MS.gene055363 | MS.gene99462 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene99462 | 0.822111 | 2.82E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene99462 | 0.80293 | 4.44E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene99462 | -0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene056400 | MS.gene99462 | 0.815694 | 8.11E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene99462 | 0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene057665 | MS.gene99462 | 0.80762 | 4.62E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene99462 | 0.807851 | 4.13E-50 | -1.69E-46 |
| MS.gene058503 | MS.gene99462 | 0.800418 | 1.45E-48 | -1.69E-46 |
| MS.gene058792 | MS.gene99462 | 0.825667 | 4.14E-54 | -1.69E-46 |
| MS.gene058851 | MS.gene99462 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene99462 | 0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene99462 | 0.830559 | 2.74E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene99462 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene060480 | MS.gene99462 | 0.814999 | 1.16E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene99462 | 0.851163 | 1.06E-60 | -1.69E-46 |
| MS.gene060683 | MS.gene99462 | 0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene99462 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene060780 | MS.gene99462 | 0.810369 | 1.19E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene99462 | 0.833808 | 4.31E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene99462 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene99462 | 0.817631 | 2.98E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99462.t1 | MTR_4g019080 | 95.415 | 349 | 15 | 1 | 3 | 350 | 2 | 350 | 0.0 | 675 |
| MS.gene99462.t1 | MTR_7g066210 | 47.967 | 369 | 149 | 11 | 7 | 350 | 2 | 352 | 4.26e-105 | 312 |
| MS.gene99462.t1 | MTR_7g011345 | 85.000 | 80 | 12 | 0 | 252 | 331 | 1 | 80 | 3.38e-41 | 139 |
| MS.gene99462.t1 | MTR_3g069910 | 30.395 | 329 | 178 | 13 | 43 | 341 | 29 | 336 | 1.71e-26 | 108 |
| MS.gene99462.t1 | MTR_5g068770 | 26.877 | 253 | 135 | 11 | 32 | 243 | 33 | 276 | 1.74e-13 | 72.0 |
| MS.gene99462.t1 | MTR_5g077100 | 29.630 | 216 | 116 | 9 | 51 | 242 | 45 | 248 | 1.21e-12 | 69.3 |
| MS.gene99462.t1 | MTR_7g062940 | 23.985 | 271 | 150 | 8 | 11 | 242 | 2 | 255 | 3.34e-11 | 65.1 |
| MS.gene99462.t1 | MTR_8g067720 | 25.385 | 390 | 208 | 18 | 1 | 348 | 1 | 349 | 5.76e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99462.t1 | AT5G01090 | 35.674 | 356 | 200 | 11 | 8 | 344 | 6 | 351 | 3.25e-59 | 195 |
| MS.gene99462.t1 | AT3G09190 | 35.159 | 347 | 199 | 11 | 11 | 337 | 4 | 344 | 2.48e-52 | 177 |
| MS.gene99462.t1 | AT3G09035 | 38.123 | 341 | 177 | 12 | 11 | 327 | 4 | 334 | 1.15e-43 | 154 |
| MS.gene99462.t1 | AT3G54080 | 26.959 | 319 | 189 | 10 | 39 | 337 | 40 | 334 | 1.07e-22 | 97.8 |
| MS.gene99462.t1 | AT5G03140 | 33.663 | 202 | 100 | 10 | 51 | 228 | 51 | 242 | 3.91e-15 | 77.0 |
| MS.gene99462.t1 | AT2G29250 | 30.488 | 246 | 134 | 10 | 32 | 242 | 18 | 261 | 1.36e-12 | 69.3 |
| MS.gene99462.t1 | AT5G60270 | 27.843 | 255 | 143 | 11 | 51 | 272 | 41 | 287 | 3.77e-12 | 67.8 |
| MS.gene99462.t1 | AT2G37710 | 27.511 | 229 | 132 | 8 | 66 | 265 | 62 | 285 | 8.36e-12 | 67.0 |
| MS.gene99462.t1 | AT4G02420 | 27.542 | 236 | 120 | 10 | 45 | 242 | 38 | 260 | 1.62e-11 | 65.9 |
| MS.gene99462.t1 | AT5G55830 | 28.994 | 338 | 176 | 19 | 8 | 294 | 2 | 326 | 2.42e-11 | 65.5 |
| MS.gene99462.t1 | AT2G29220 | 30.000 | 270 | 143 | 13 | 9 | 242 | 2 | 261 | 3.89e-11 | 64.7 |
| MS.gene99462.t1 | AT3G53810 | 28.837 | 215 | 114 | 9 | 66 | 249 | 62 | 268 | 5.14e-11 | 64.3 |
Find 54 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTGCTGCAATGATATT+TGG | 0.190612 | 4.2:-83361782 | MS.gene99462:CDS |
| GAACAAAATGATGAAAATTA+AGG | 0.213685 | 4.2:+83362603 | None:intergenic |
| AAGATTCAATTCTCTGAATC+TGG | 0.271114 | 4.2:-83362460 | MS.gene99462:CDS |
| CTTTATTTGTGGACAATCTT+TGG | 0.296212 | 4.2:-83361725 | MS.gene99462:CDS |
| AATGGTGTCAAAAGTGTTAA+AGG | 0.299364 | 4.2:-83362307 | MS.gene99462:CDS |
| GCAAAGGAAAACAAAGGAAT+TGG | 0.308883 | 4.2:+83362559 | None:intergenic |
| AAGGAATTGGGTCAAAAGAT+AGG | 0.346432 | 4.2:+83362572 | None:intergenic |
| GTGGTGAAAAGTTGCATACT+TGG | 0.363123 | 4.2:-83362120 | MS.gene99462:CDS |
| CATTCACTGTGCTTTATTTG+TGG | 0.378610 | 4.2:-83361736 | MS.gene99462:CDS |
| GGTTGCATAGAACATCCTTC+TGG | 0.388793 | 4.2:+83361680 | None:intergenic |
| GAAAATGAAACTAATTGCTT+AGG | 0.395154 | 4.2:+83362394 | None:intergenic |
| AATTAAGGATTTGAAGTAAA+GGG | 0.401934 | 4.2:+83362618 | None:intergenic |
| TGACATATCTAATGTCTTGA+AGG | 0.404093 | 4.2:-83362005 | MS.gene99462:CDS |
| AAGGATGAAGAAATGTTTGT+TGG | 0.406456 | 4.2:-83361986 | MS.gene99462:CDS |
| TTTACCTTGAATAACCTTGA+TGG | 0.409606 | 4.2:+83362417 | None:intergenic |
| AAAGCTACTTTACCAATTTG+AGG | 0.410593 | 4.2:-83362150 | MS.gene99462:CDS |
| CTGAAATTTAAGTCCAATGT+TGG | 0.412543 | 4.2:-83362520 | MS.gene99462:CDS |
| TTCAATCTCAATGGAAAATG+AGG | 0.414272 | 4.2:-83362356 | MS.gene99462:CDS |
| AGATTCAGAGAATTGAATCT+TGG | 0.417959 | 4.2:+83362462 | None:intergenic |
| ATTCATGGAGCTTTGTTATG+AGG | 0.423293 | 4.2:-83361928 | MS.gene99462:CDS |
| TTCCTATACTCAACATCTAA+AGG | 0.425116 | 4.2:+83361659 | None:intergenic |
| AGCCATTGGATCCATTGTTA+TGG | 0.433636 | 4.2:-83362036 | MS.gene99462:CDS |
| GCTGCAATGATATTTGGTAC+TGG | 0.447642 | 4.2:-83361776 | MS.gene99462:CDS |
| ATGATATTTGGTACTGGTTG+TGG | 0.463600 | 4.2:-83361770 | MS.gene99462:CDS |
| GTTGTAGATAATAAAACCAT+TGG | 0.483802 | 4.2:-83361626 | MS.gene99462:CDS |
| ACATGGAAATTCAAAGCCAT+TGG | 0.487541 | 4.2:-83362050 | MS.gene99462:CDS |
| CAAAGGAAAACAAAGGAATT+GGG | 0.488244 | 4.2:+83362560 | None:intergenic |
| TTGATTATGAAGCAAGTTCA+AGG | 0.491101 | 4.2:-83362096 | MS.gene99462:CDS |
| TTACCTTGAATAACCTTGAT+GGG | 0.491388 | 4.2:+83362418 | None:intergenic |
| AACCTTTAGATGTTGAGTAT+AGG | 0.496316 | 4.2:-83361661 | MS.gene99462:CDS |
| GGTTGTTAAACCAAAGGAAA+AGG | 0.497433 | 4.2:-83361831 | MS.gene99462:CDS |
| AAACCCATCAAGGTTATTCA+AGG | 0.503209 | 4.2:-83362421 | MS.gene99462:CDS |
| AGGAATTGGGTCAAAAGATA+GGG | 0.505116 | 4.2:+83362573 | None:intergenic |
| TGCCATAACAATGGATCCAA+TGG | 0.520573 | 4.2:+83362034 | None:intergenic |
| AGATTCAATTCTCTGAATCT+GGG | 0.525904 | 4.2:-83362459 | MS.gene99462:CDS |
| GATAATAAAACCATTGGAGA+TGG | 0.530127 | 4.2:-83361620 | MS.gene99462:CDS |
| TTCAATGGTTGTTAAACCAA+AGG | 0.530255 | 4.2:-83361837 | MS.gene99462:CDS |
| CTACTTATTACCATCTCCAA+TGG | 0.535555 | 4.2:+83361610 | None:intergenic |
| AAATTAAGGATTTGAAGTAA+AGG | 0.544616 | 4.2:+83362617 | None:intergenic |
| GTTGGATTTAGTCATGTGAA+GGG | 0.567364 | 4.2:-83361968 | MS.gene99462:CDS |
| TGTTGGATTTAGTCATGTGA+AGG | 0.574358 | 4.2:-83361969 | MS.gene99462:CDS |
| ACAGAAACATTAGGATCAAG+TGG | 0.578057 | 4.2:+83361875 | None:intergenic |
| TCAATCTCAATGGAAAATGA+GGG | 0.579881 | 4.2:-83362355 | MS.gene99462:CDS |
| TTGGATTTAGTCATGTGAAG+GGG | 0.605657 | 4.2:-83361967 | MS.gene99462:CDS |
| GAAGCGAGACTGAGTAAACA+TGG | 0.608963 | 4.2:-83362067 | MS.gene99462:CDS |
| GATTTACAAGAAACCCATCA+AGG | 0.610971 | 4.2:-83362431 | MS.gene99462:CDS |
| ATCTCAATGGAAAATGAGGG+TGG | 0.611815 | 4.2:-83362352 | MS.gene99462:CDS |
| CGTGGTGCAGTTGTTCCAGA+AGG | 0.612769 | 4.2:-83361695 | MS.gene99462:CDS |
| ATTACCATAAAATCCAACAT+TGG | 0.612888 | 4.2:+83362507 | None:intergenic |
| AAATCAGCAAAGGAAAACAA+AGG | 0.645808 | 4.2:+83362553 | None:intergenic |
| ACAATCTTTGGCAATAAACG+TGG | 0.699558 | 4.2:-83361713 | MS.gene99462:CDS |
| GGCTCTGAATGCATAGAATG+TGG | 0.706249 | 4.2:+83361896 | None:intergenic |
| ATTATGAAGCAAGTTCAAGG+AGG | 0.716891 | 4.2:-83362093 | MS.gene99462:CDS |
| TCTGAATGCATAGAATGTGG+TGG | 0.723371 | 4.2:+83361899 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAAATAATGATTTTCA+AGG | - | chr4.2:83362006-83362025 | MS.gene99462:CDS | 15.0% |
| !! | GAACAAAATGATGAAAATTA+AGG | + | chr4.2:83361650-83361669 | None:intergenic | 20.0% |
| !! | TAAAAAAAGTGAAACTTCAA+TGG | - | chr4.2:83362398-83362417 | MS.gene99462:CDS | 20.0% |
| !!! | AAATTAAGGATTTGAAGTAA+AGG | + | chr4.2:83361636-83361655 | None:intergenic | 20.0% |
| !!! | AATGAGATTTTGATTAGAAA+TGG | - | chr4.2:83362066-83362085 | MS.gene99462:CDS | 20.0% |
| !!! | AATTAAGGATTTGAAGTAAA+GGG | + | chr4.2:83361635-83361654 | None:intergenic | 20.0% |
| !!! | CTTTTTTTAACAGAAACATT+AGG | + | chr4.2:83362387-83362406 | None:intergenic | 20.0% |
| !!! | TTTTACATTTTCAATCTCAA+TGG | - | chr4.2:83361885-83361904 | MS.gene99462:CDS | 20.0% |
| !!! | TTTTTAATCAAAGTTCATCT+GGG | - | chr4.2:83361971-83361990 | MS.gene99462:CDS | 20.0% |
| ! | ATTACCATAAAATCCAACAT+TGG | + | chr4.2:83361746-83361765 | None:intergenic | 25.0% |
| ! | GAAAATGAAACTAATTGCTT+AGG | + | chr4.2:83361859-83361878 | None:intergenic | 25.0% |
| ! | GTTGTAGATAATAAAACCAT+TGG | - | chr4.2:83362624-83362643 | MS.gene99462:CDS | 25.0% |
| !! | ATAATGCTTTTCTGTATTCA+TGG | - | chr4.2:83362307-83362326 | MS.gene99462:CDS | 25.0% |
| !! | GTTTTTAATCAAAGTTCATC+TGG | - | chr4.2:83361970-83361989 | MS.gene99462:CDS | 25.0% |
| !!! | ATCTTTTTCAAAATCAGCAA+AGG | + | chr4.2:83361710-83361729 | None:intergenic | 25.0% |
| AAATCAGCAAAGGAAAACAA+AGG | + | chr4.2:83361700-83361719 | None:intergenic | 30.0% | |
| AACCTTTAGATGTTGAGTAT+AGG | - | chr4.2:83362589-83362608 | MS.gene99462:CDS | 30.0% | |
| AAGATTCAATTCTCTGAATC+TGG | - | chr4.2:83361790-83361809 | MS.gene99462:CDS | 30.0% | |
| AAGGATGAAGAAATGTTTGT+TGG | - | chr4.2:83362264-83362283 | MS.gene99462:CDS | 30.0% | |
| AGATTCAATTCTCTGAATCT+GGG | - | chr4.2:83361791-83361810 | MS.gene99462:CDS | 30.0% | |
| AGATTCAGAGAATTGAATCT+TGG | + | chr4.2:83361791-83361810 | None:intergenic | 30.0% | |
| CAAAGGAAAACAAAGGAATT+GGG | + | chr4.2:83361693-83361712 | None:intergenic | 30.0% | |
| CTGAAATTTAAGTCCAATGT+TGG | - | chr4.2:83361730-83361749 | MS.gene99462:CDS | 30.0% | |
| GATAATAAAACCATTGGAGA+TGG | - | chr4.2:83362630-83362649 | MS.gene99462:CDS | 30.0% | |
| GGTAATGCAAAAATTGTCAA+TGG | - | chr4.2:83361760-83361779 | MS.gene99462:CDS | 30.0% | |
| TCAATCTCAATGGAAAATGA+GGG | - | chr4.2:83361895-83361914 | MS.gene99462:CDS | 30.0% | |
| TGACATATCTAATGTCTTGA+AGG | - | chr4.2:83362245-83362264 | MS.gene99462:CDS | 30.0% | |
| TTACCTTGAATAACCTTGAT+GGG | + | chr4.2:83361835-83361854 | None:intergenic | 30.0% | |
| TTCAATCTCAATGGAAAATG+AGG | - | chr4.2:83361894-83361913 | MS.gene99462:CDS | 30.0% | |
| TTCAATGGTTGTTAAACCAA+AGG | - | chr4.2:83362413-83362432 | MS.gene99462:CDS | 30.0% | |
| TTCCTATACTCAACATCTAA+AGG | + | chr4.2:83362594-83362613 | None:intergenic | 30.0% | |
| TTGATTATGAAGCAAGTTCA+AGG | - | chr4.2:83362154-83362173 | MS.gene99462:CDS | 30.0% | |
| TTTACCTTGAATAACCTTGA+TGG | + | chr4.2:83361836-83361855 | None:intergenic | 30.0% | |
| ! | AAAGCTACTTTACCAATTTG+AGG | - | chr4.2:83362100-83362119 | MS.gene99462:CDS | 30.0% |
| ! | AAGTCCAATGTTGGATTTTA+TGG | - | chr4.2:83361739-83361758 | MS.gene99462:CDS | 30.0% |
| ! | CTTTATTTGTGGACAATCTT+TGG | - | chr4.2:83362525-83362544 | MS.gene99462:CDS | 30.0% |
| ! | TCAATTTTGTGCCATAACAA+TGG | + | chr4.2:83362228-83362247 | None:intergenic | 30.0% |
| ! | TTAACACTTTTGACACCATT+TGG | + | chr4.2:83361943-83361962 | None:intergenic | 30.0% |
| !! | AATGGTGTCAAAAGTGTTAA+AGG | - | chr4.2:83361943-83361962 | MS.gene99462:CDS | 30.0% |
| !! | GCTTTTGTTATGATTCCAAA+TGG | - | chr4.2:83361925-83361944 | MS.gene99462:CDS | 30.0% |
| !! | TGTTGAGTTTTGTGGTTATA+AGG | - | chr4.2:83362035-83362054 | MS.gene99462:CDS | 30.0% |
| AAACCCATCAAGGTTATTCA+AGG | - | chr4.2:83361829-83361848 | MS.gene99462:CDS | 35.0% | |
| AAGGAATTGGGTCAAAAGAT+AGG | + | chr4.2:83361681-83361700 | None:intergenic | 35.0% | |
| ACAATCTTTGGCAATAAACG+TGG | - | chr4.2:83362537-83362556 | MS.gene99462:CDS | 35.0% | |
| ACAGAAACATTAGGATCAAG+TGG | + | chr4.2:83362378-83362397 | None:intergenic | 35.0% | |
| ACATGGAAATTCAAAGCCAT+TGG | - | chr4.2:83362200-83362219 | MS.gene99462:CDS | 35.0% | |
| AGGAATTGGGTCAAAAGATA+GGG | + | chr4.2:83361680-83361699 | None:intergenic | 35.0% | |
| ATTATGAAGCAAGTTCAAGG+AGG | - | chr4.2:83362157-83362176 | MS.gene99462:CDS | 35.0% | |
| CTACTTATTACCATCTCCAA+TGG | + | chr4.2:83362643-83362662 | None:intergenic | 35.0% | |
| GATTTACAAGAAACCCATCA+AGG | - | chr4.2:83361819-83361838 | MS.gene99462:CDS | 35.0% | |
| GCAAAGGAAAACAAAGGAAT+TGG | + | chr4.2:83361694-83361713 | None:intergenic | 35.0% | |
| GGTTGTTAAACCAAAGGAAA+AGG | - | chr4.2:83362419-83362438 | MS.gene99462:CDS | 35.0% | |
| GTTCTTGCTGCAATGATATT+TGG | - | chr4.2:83362468-83362487 | MS.gene99462:CDS | 35.0% | |
| GTTGGATTTAGTCATGTGAA+GGG | - | chr4.2:83362282-83362301 | MS.gene99462:CDS | 35.0% | |
| TGTTGGATTTAGTCATGTGA+AGG | - | chr4.2:83362281-83362300 | MS.gene99462:CDS | 35.0% | |
| TTGGATTTAGTCATGTGAAG+GGG | - | chr4.2:83362283-83362302 | MS.gene99462:CDS | 35.0% | |
| ! | ACCAATTTGAGGCTAAAAAG+TGG | - | chr4.2:83362111-83362130 | MS.gene99462:CDS | 35.0% |
| ! | TTCTTCTTTGCCTTTTCCTT+TGG | + | chr4.2:83362432-83362451 | None:intergenic | 35.0% |
| !! | ATGATATTTGGTACTGGTTG+TGG | - | chr4.2:83362480-83362499 | MS.gene99462:CDS | 35.0% |
| !! | ATTCATGGAGCTTTGTTATG+AGG | - | chr4.2:83362322-83362341 | MS.gene99462:CDS | 35.0% |
| !! | CATTCACTGTGCTTTATTTG+TGG | - | chr4.2:83362514-83362533 | MS.gene99462:CDS | 35.0% |
| !! | GAGTTTTGTGGTTATAAGGA+TGG | - | chr4.2:83362039-83362058 | MS.gene99462:CDS | 35.0% |
| !! | GGTATTAGTGTTGAGTTTTG+TGG | - | chr4.2:83362027-83362046 | MS.gene99462:CDS | 35.0% |
| !!! | ACCACTTTTTAGCCTCAAAT+TGG | + | chr4.2:83362115-83362134 | None:intergenic | 35.0% |
| AGCCATTGGATCCATTGTTA+TGG | - | chr4.2:83362214-83362233 | MS.gene99462:CDS | 40.0% | |
| ATCTCAATGGAAAATGAGGG+TGG | - | chr4.2:83361898-83361917 | MS.gene99462:CDS | 40.0% | |
| GCTGCAATGATATTTGGTAC+TGG | - | chr4.2:83362474-83362493 | MS.gene99462:CDS | 40.0% | |
| GTGGTGAAAAGTTGCATACT+TGG | - | chr4.2:83362130-83362149 | MS.gene99462:CDS | 40.0% | |
| TCTGAATGCATAGAATGTGG+TGG | + | chr4.2:83362354-83362373 | None:intergenic | 40.0% | |
| TGCCATAACAATGGATCCAA+TGG | + | chr4.2:83362219-83362238 | None:intergenic | 40.0% | |
| ! | AGTTCATCTGGGTTTTCTCT+TGG | - | chr4.2:83361982-83362001 | MS.gene99462:CDS | 40.0% |
| GAAGCGAGACTGAGTAAACA+TGG | - | chr4.2:83362183-83362202 | MS.gene99462:CDS | 45.0% | |
| GGTTGCATAGAACATCCTTC+TGG | + | chr4.2:83362573-83362592 | None:intergenic | 45.0% | |
| !! | GGCTCTGAATGCATAGAATG+TGG | + | chr4.2:83362357-83362376 | None:intergenic | 45.0% |
| CGTGGTGCAGTTGTTCCAGA+AGG | - | chr4.2:83362555-83362574 | MS.gene99462:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 83361610 | 83362662 | 83361610 | ID=MS.gene99462 |
| chr4.2 | mRNA | 83361610 | 83362662 | 83361610 | ID=MS.gene99462.t1;Parent=MS.gene99462 |
| chr4.2 | exon | 83361610 | 83362662 | 83361610 | ID=MS.gene99462.t1.exon1;Parent=MS.gene99462.t1 |
| chr4.2 | CDS | 83361610 | 83362662 | 83361610 | ID=cds.MS.gene99462.t1;Parent=MS.gene99462.t1 |
| Gene Sequence |
| Protein sequence |
