Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048933.01.T01 | XP_003631117.1 | 99.315 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048933.01.T01 | Q6DRC4 | 41.584 | 303 | 145 | 10 | 4 | 289 | 3 | 290 | 4.46E-67 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048933.01.T01 | G7LE61 | 99.315 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048933.01 | MsG0180000096.01 | 0.802288 | 6.023916e-49 | 2.939659e-46 |
| MsG0080048933.01 | MsG0180000118.01 | 0.829240 | 5.749108e-55 | 5.850489e-52 |
| MsG0080048933.01 | MsG0180001169.01 | 0.820131 | 8.066942e-53 | 6.329453e-50 |
| MsG0080048933.01 | MsG0180001829.01 | 0.826638 | 2.430306e-54 | 2.292224e-51 |
| MsG0080048933.01 | MsG0180001837.01 | 0.853834 | 1.838941e-61 | 4.026419e-58 |
| MsG0080048933.01 | MsG0180002738.01 | 0.829621 | 4.647276e-55 | 4.781795e-52 |
| MsG0080048933.01 | MsG0180003897.01 | 0.846150 | 2.602488e-59 | 4.437340e-56 |
| MsG0080048933.01 | MsG0180004064.01 | 0.823389 | 1.422211e-53 | 1.222731e-50 |
| MsG0080048933.01 | MsG0180004607.01 | 0.838295 | 3.131341e-57 | 4.175283e-54 |
| MsG0080048933.01 | MsG0180004622.01 | 0.802525 | 5.383927e-49 | 2.643059e-46 |
| MsG0080048933.01 | MsG0180005573.01 | 0.807026 | 6.179744e-50 | 3.405336e-47 |
| MsG0080048933.01 | MsG0280006629.01 | 0.801083 | 1.064551e-48 | 5.038754e-46 |
| MsG0080048933.01 | MsG0280006747.01 | 0.841921 | 3.544664e-58 | 5.287332e-55 |
| MsG0080048933.01 | MsG0280007055.01 | 0.800611 | 1.329081e-48 | 6.215698e-46 |
| MsG0080048933.01 | MsG0280007995.01 | 0.842724 | 2.171051e-58 | 3.320906e-55 |
| MsG0080048933.01 | MsG0280011259.01 | 0.801966 | 7.017720e-49 | 3.396321e-46 |
| MsG0080048933.01 | MsG0380016577.01 | 0.813558 | 2.409238e-51 | 1.578453e-48 |
| MsG0080048933.01 | MsG0380016622.01 | 0.873716 | 1.185619e-67 | 5.196686e-64 |
| MsG0080048933.01 | MsG0380016678.01 | 0.802018 | 6.844225e-49 | 3.316970e-46 |
| MsG0080048933.01 | MsG0380016733.01 | 0.815612 | 8.456964e-52 | 5.859034e-49 |
| MsG0080048933.01 | MsG0480019165.01 | 0.869309 | 3.411127e-66 | 1.274206e-62 |
| MsG0080048933.01 | MsG0480021279.01 | 0.807452 | 5.020885e-50 | 2.797617e-47 |
| MsG0080048933.01 | MsG0480022789.01 | 0.852403 | 4.723588e-61 | 9.858790e-58 |
| MsG0080048933.01 | MsG0480022923.01 | 0.809905 | 1.501634e-50 | 8.926256e-48 |
| MsG0080048933.01 | MsG0480023970.01 | 0.897102 | 1.945681e-76 | 2.165459e-72 |
| MsG0080048933.01 | MsG0580024481.01 | 0.817384 | 3.391604e-52 | 2.466391e-49 |
| MsG0080048933.01 | MsG0580024738.01 | 0.809782 | 1.596313e-50 | 9.458727e-48 |
| MsG0080048933.01 | MsG0580025073.01 | 0.906344 | 1.639935e-80 | 2.766503e-76 |
| MsG0080048933.01 | MsG0580025750.01 | 0.821343 | 4.246295e-53 | 3.445522e-50 |
| MsG0080048933.01 | MsG0580029702.01 | 0.834017 | 3.820945e-56 | 4.477395e-53 |
| MsG0080048933.01 | MsG0580030073.01 | 0.860009 | 2.783355e-63 | 7.497607e-60 |
| MsG0080048933.01 | MsG0780036859.01 | 0.803628 | 3.183681e-49 | 1.607695e-46 |
| MsG0080048933.01 | MsG0780038383.01 | 0.822189 | 2.706579e-53 | 2.249177e-50 |
| MsG0080048933.01 | MsG0780041240.01 | 0.802586 | 5.228468e-49 | 2.570832e-46 |
| MsG0080048933.01 | MsG0780041332.01 | 0.816219 | 6.191009e-52 | 4.360774e-49 |
| MsG0080048933.01 | MsG0880042209.01 | 0.880349 | 5.906008e-70 | 3.316181e-66 |
| MsG0080048933.01 | MsG0880042517.01 | 0.801163 | 1.024901e-48 | 4.860847e-46 |
| MsG0080048933.01 | MsG0880043076.01 | 0.804267 | 2.345354e-49 | 1.203916e-46 |
| MsG0080048933.01 | MsG0880047082.01 | 0.820040 | 8.461906e-53 | 6.622479e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080048933.01 | MsG0780040280.01 | PPI |
| MsG0080048933.01 | MsG0580024369.01 | PPI |
| MsG0080048933.01 | MsG0280009999.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048933.01.T01 | MTR_8g107310 | 99.315 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 0.0 | 597 |
| MsG0080048933.01.T01 | MTR_8g031560 | 76.289 | 291 | 56 | 3 | 3 | 292 | 2 | 280 | 3.19e-160 | 447 |
| MsG0080048933.01.T01 | MTR_5g017130 | 50.000 | 110 | 52 | 2 | 185 | 292 | 68 | 176 | 1.95e-26 | 102 |
| MsG0080048933.01.T01 | MTR_4g081510 | 38.462 | 78 | 48 | 0 | 213 | 290 | 46 | 123 | 4.90e-11 | 61.2 |
| MsG0080048933.01.T01 | MTR_8g022050 | 42.857 | 77 | 44 | 0 | 212 | 288 | 148 | 224 | 6.90e-11 | 62.8 |
| MsG0080048933.01.T01 | MTR_1g080390 | 36.842 | 76 | 48 | 0 | 215 | 290 | 286 | 361 | 7.80e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048933.01.T01 | AT3G11400 | 72.973 | 296 | 74 | 5 | 1 | 292 | 1 | 294 | 8.41e-156 | 436 |
| MsG0080048933.01.T01 | AT3G11400 | 66.873 | 323 | 74 | 5 | 1 | 292 | 1 | 321 | 8.80e-151 | 425 |
| MsG0080048933.01.T01 | AT5G06000 | 64.626 | 294 | 93 | 6 | 1 | 291 | 1 | 286 | 1.45e-132 | 378 |
| MsG0080048933.01.T01 | AT1G54080 | 41.111 | 90 | 50 | 1 | 206 | 292 | 140 | 229 | 6.85e-12 | 65.9 |
| MsG0080048933.01.T01 | AT3G14100 | 41.111 | 90 | 50 | 1 | 206 | 292 | 136 | 225 | 1.05e-11 | 65.5 |
| MsG0080048933.01.T01 | AT1G54080 | 40.426 | 94 | 49 | 2 | 206 | 292 | 140 | 233 | 2.14e-11 | 64.3 |
Find 107 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAATGCTTAGGTTGTTCT+TGG | 0.243434 | contig549end:-7336 | None:intergenic |
| CAATAAAGGTGCTGTTCTTA+TGG | 0.252283 | contig549end:+6861 | MsG0080048933.01.T01:CDS |
| GCGCCGTTGAGCGCCGTTCC+TGG | 0.290623 | contig549end:+6411 | MsG0080048933.01.T01:CDS |
| GTTGCAACAGATGCTGCTCC+TGG | 0.291109 | contig549end:+6979 | MsG0080048933.01.T01:CDS |
| ATTCGATGATGATGGTAATA+AGG | 0.312148 | contig549end:+6331 | MsG0080048933.01.T01:CDS |
| GACAGTGGGTCAGCAGTCTT+TGG | 0.317010 | contig549end:-6832 | None:intergenic |
| GACTTCAAGGTGTCCATATA+AGG | 0.326137 | contig549end:+6918 | MsG0080048933.01.T01:CDS |
| CGGAAAAGCTCAAGCAAATC+AGG | 0.333826 | contig549end:-7144 | None:intergenic |
| ATCAACAAACTCAATGGATA+TGG | 0.334085 | contig549end:+7276 | MsG0080048933.01.T01:CDS |
| CCAATGCTTAGGTTGTTCTT+GGG | 0.335891 | contig549end:-7335 | None:intergenic |
| GTGATAGGTCCTGATGAAAA+TGG | 0.346524 | contig549end:+6284 | MsG0080048933.01.T01:CDS |
| TCACCTGACGTGGTGGTAAC+AGG | 0.357484 | contig549end:-6265 | None:intergenic |
| TTATGGTATGCAGGACTTGC+GGG | 0.371975 | contig549end:+6878 | MsG0080048933.01.T01:CDS |
| GAAGCTAAGGTGGGGAGAAT+TGG | 0.373757 | contig549end:+6214 | MsG0080048933.01.T01:CDS |
| GGAAGACGATGGCGAAGATC+TGG | 0.395348 | contig549end:+6238 | MsG0080048933.01.T01:CDS |
| CCACTGTCTCAATTCAATAA+AGG | 0.396074 | contig549end:+6847 | MsG0080048933.01.T01:CDS |
| CGTCGGTGCCCGCCTCACTA+TGG | 0.408913 | contig549end:+6463 | MsG0080048933.01.T01:CDS |
| GCTTCAGCTGCCTCAGCAAA+GGG | 0.410110 | contig549end:+7003 | MsG0080048933.01.T01:CDS |
| ACGCGCGTTGGCAAGTTTGC+GGG | 0.418864 | contig549end:-6378 | None:intergenic |
| TTGCAACAGATGCTGCTCCT+GGG | 0.430137 | contig549end:+6980 | MsG0080048933.01.T01:CDS |
| CGCCGTTCCTGGCCTAAGTT+CGG | 0.430777 | contig549end:+6422 | MsG0080048933.01.T01:CDS |
| GGCTTCAGCTGCCTCAGCAA+AGG | 0.431088 | contig549end:+7002 | MsG0080048933.01.T01:CDS |
| GGAGCAGCATCTGTTGCAAC+AGG | 0.435145 | contig549end:-6976 | None:intergenic |
| ATGCAGGACTTGCGGGAAGA+AGG | 0.440149 | contig549end:+6885 | MsG0080048933.01.T01:CDS |
| GACGCGCGTTGGCAAGTTTG+CGG | 0.443758 | contig549end:-6379 | None:intergenic |
| ACTGGCATGAGTAGGGGCTT+TGG | 0.446792 | contig549end:+7213 | MsG0080048933.01.T01:CDS |
| GCTTTGTGAACTTTGTTAGC+AGG | 0.448198 | contig549end:+7235 | MsG0080048933.01.T01:CDS |
| TCCTCTCCGCACCAGCTCTC+AGG | 0.449264 | contig549end:-7044 | None:intergenic |
| GGGTGGCCCATTCAACTCTC+AGG | 0.454110 | contig549end:-7314 | None:intergenic |
| GCTGAGGCAGCTGAAGCCCC+AGG | 0.456235 | contig549end:-6997 | None:intergenic |
| GAACGATGAGAATTCTGTTC+GGG | 0.459314 | contig549end:+7092 | MsG0080048933.01.T01:CDS |
| TTTCCTGTTACCACCACGTC+AGG | 0.468496 | contig549end:+6262 | MsG0080048933.01.T01:CDS |
| GGCTGTGCGAGATCCTTATA+TGG | 0.469555 | contig549end:-6931 | None:intergenic |
| AGTCTTTGGATCCTCCTTGT+TGG | 0.470984 | contig549end:-6818 | None:intergenic |
| GCTGGTGCGGAGAGGACTAC+TGG | 0.480564 | contig549end:+7051 | MsG0080048933.01.T01:CDS |
| CTGATGAAAATGGAATCAAA+AGG | 0.493183 | contig549end:+6294 | MsG0080048933.01.T01:CDS |
| CCTTGTGTCCTCCGAGAGGT+TGG | 0.493283 | contig549end:-7118 | None:intergenic |
| GGCGGCAATTCAGTCTGAAC+CGG | 0.495287 | contig549end:+6190 | MsG0080048933.01.T01:CDS |
| TGCTTAGGTTGTTCTTGGGG+TGG | 0.495372 | contig549end:-7331 | None:intergenic |
| TCTCATCCTGAGAGTTGAAT+GGG | 0.497673 | contig549end:+7308 | MsG0080048933.01.T01:CDS |
| GCGGGAAGAAGGGTGATCAT+TGG | 0.499819 | contig549end:+6896 | MsG0080048933.01.T01:CDS |
| GTGCTGTTCTTATGGTATGC+AGG | 0.503047 | contig549end:+6869 | MsG0080048933.01.T01:CDS |
| CTGAACCGGCGAAGCTAAGG+TGG | 0.503185 | contig549end:+6204 | MsG0080048933.01.T01:CDS |
| ATCTCATCCTGAGAGTTGAA+TGG | 0.503653 | contig549end:+7307 | MsG0080048933.01.T01:CDS |
| TCAAAAGACTGGCATGAGTA+GGG | 0.504440 | contig549end:+7206 | MsG0080048933.01.T01:CDS |
| TTACCACCACGTCAGGTGAT+AGG | 0.508065 | contig549end:+6269 | MsG0080048933.01.T01:CDS |
| TCTCCCCACCTTAGCTTCGC+CGG | 0.508727 | contig549end:-6209 | None:intergenic |
| TGCAGGACTTGCGGGAAGAA+GGG | 0.508910 | contig549end:+6886 | MsG0080048933.01.T01:CDS |
| GTTGCTATTGATCAAAAGAC+TGG | 0.519323 | contig549end:+7195 | MsG0080048933.01.T01:CDS |
| CAATGCTTAGGTTGTTCTTG+GGG | 0.520594 | contig549end:-7334 | None:intergenic |
| AGGGTGATCATTGGACTTCA+AGG | 0.520801 | contig549end:+6905 | MsG0080048933.01.T01:CDS |
| CTCGAACGCCCCAAACCACT+TGG | 0.521196 | contig549end:+6506 | MsG0080048933.01.T01:CDS |
| AGGGCTATCAACAAACTCAA+TGG | 0.522389 | contig549end:+7270 | MsG0080048933.01.T01:CDS |
| GAGTACAAATTCGATGATGA+TGG | 0.524262 | contig549end:+6323 | MsG0080048933.01.T01:CDS |
| TCCGCACCAGCTCTCAGGCT+AGG | 0.528088 | contig549end:-7039 | None:intergenic |
| GGTTTATCAACAAAAGTCTC+AGG | 0.531499 | contig549end:-6955 | None:intergenic |
| TACTGACAGCACCAAAAGGC+CGG | 0.531711 | contig549end:-7164 | None:intergenic |
| CTTATGGTATGCAGGACTTG+CGG | 0.534636 | contig549end:+6877 | MsG0080048933.01.T01:CDS |
| CTTTGTGAACTTTGTTAGCA+GGG | 0.538694 | contig549end:+7236 | MsG0080048933.01.T01:CDS |
| GGAACGATGAGAATTCTGTT+CGG | 0.539699 | contig549end:+7091 | MsG0080048933.01.T01:CDS |
| GCGTTCGAGAAGGATCTCTT+CGG | 0.539858 | contig549end:-6492 | None:intergenic |
| TGCAACAGATGCTGCTCCTG+GGG | 0.541734 | contig549end:+6981 | MsG0080048933.01.T01:CDS |
| GGCGTCTCCGAACTTAGGCC+AGG | 0.544227 | contig549end:-6429 | None:intergenic |
| GCTAAGGTGGGGAGAATTGG+AGG | 0.546676 | contig549end:+6217 | MsG0080048933.01.T01:CDS |
| TGATGAAAATGGAATCAAAA+GGG | 0.546960 | contig549end:+6295 | MsG0080048933.01.T01:CDS |
| GGCAAGTTTGCGGGTTCGAG+TGG | 0.547824 | contig549end:-6369 | None:intergenic |
| AGTCTGAACCGGCGAAGCTA+AGG | 0.552460 | contig549end:+6201 | MsG0080048933.01.T01:CDS |
| GGCACCGACGTCTTCATGAA+CGG | 0.554768 | contig549end:-6450 | None:intergenic |
| ACCCTACTGACAGCACCAAA+AGG | 0.555974 | contig549end:-7168 | None:intergenic |
| AGGCCAGGAACGGCGCTCAA+CGG | 0.556345 | contig549end:-6414 | None:intergenic |
| GCGTTTGCTGAGACGCGCGT+TGG | 0.556548 | contig549end:-6390 | None:intergenic |
| CCAACCTCTCGGAGGACACA+AGG | 0.558509 | contig549end:+7118 | MsG0080048933.01.T01:CDS |
| GGTGGAAACCATAGTGAGGC+GGG | 0.568445 | contig549end:-6471 | None:intergenic |
| GTGGTTTGGGGCGTTCGAGA+AGG | 0.575414 | contig549end:-6502 | None:intergenic |
| CTCCGAACTTAGGCCAGGAA+CGG | 0.576631 | contig549end:-6424 | None:intergenic |
| ATCAAAAGACTGGCATGAGT+AGG | 0.579916 | contig549end:+7205 | MsG0080048933.01.T01:CDS |
| TCCTAGCCTGAGAGCTGGTG+CGG | 0.588822 | contig549end:+7038 | MsG0080048933.01.T01:CDS |
| TGAACGGCGTCTCCGAACTT+AGG | 0.601313 | contig549end:-6434 | None:intergenic |
| CTTTATTGAATTGAGACAGT+GGG | 0.603664 | contig549end:-6846 | None:intergenic |
| CTGGCTCTGACATGAGGCGG+AGG | 0.610847 | contig549end:+7070 | MsG0080048933.01.T01:CDS |
| GTACCTCCTAGCCTGAGAGC+TGG | 0.611149 | contig549end:+7033 | MsG0080048933.01.T01:CDS |
| CAAAAGACTGGCATGAGTAG+GGG | 0.615375 | contig549end:+7207 | MsG0080048933.01.T01:CDS |
| TGAACCGGCGAAGCTAAGGT+GGG | 0.616663 | contig549end:+6205 | MsG0080048933.01.T01:CDS |
| GCCTGAGAGCTGGTGCGGAG+AGG | 0.623849 | contig549end:+7043 | MsG0080048933.01.T01:CDS |
| TACATATGCACCCTTTGCTG+AGG | 0.623928 | contig549end:-7013 | None:intergenic |
| TTCGAGAAGGATCTCTTCGG+TGG | 0.624825 | contig549end:-6489 | None:intergenic |
| TAGCAGGGAAGATGCTCAGA+GGG | 0.624825 | contig549end:+7251 | MsG0080048933.01.T01:CDS |
| CAACCTCTCGGAGGACACAA+GGG | 0.627480 | contig549end:+7119 | MsG0080048933.01.T01:CDS |
| CGGTGGAAACCATAGTGAGG+CGG | 0.629968 | contig549end:-6472 | None:intergenic |
| GGACTACTGGCTCTGACATG+AGG | 0.632778 | contig549end:+7064 | MsG0080048933.01.T01:CDS |
| TGTTCGGGTAACCAACCTCT+CGG | 0.633411 | contig549end:+7107 | MsG0080048933.01.T01:CDS |
| AATCTAATCAGACATGGCGG+CGG | 0.647531 | contig549end:+6172 | None:intergenic |
| GCACCAGCTCTCAGGCTAGG+AGG | 0.652161 | contig549end:-7036 | None:intergenic |
| GAACCGGCGAAGCTAAGGTG+GGG | 0.653069 | contig549end:+6206 | MsG0080048933.01.T01:CDS |
| CCTTTATTGAATTGAGACAG+TGG | 0.657041 | contig549end:-6847 | None:intergenic |
| CTACTGGCTCTGACATGAGG+CGG | 0.663022 | contig549end:+7067 | MsG0080048933.01.T01:CDS |
| GCTCCCTTGTGTCCTCCGAG+AGG | 0.679337 | contig549end:-7122 | None:intergenic |
| GGACCTATCACCTGACGTGG+TGG | 0.679711 | contig549end:-6272 | None:intergenic |
| TTATCAACAAAAGTCTCAGG+CGG | 0.681859 | contig549end:-6952 | None:intergenic |
| TTAGCAGGGAAGATGCTCAG+AGG | 0.686366 | contig549end:+7250 | MsG0080048933.01.T01:CDS |
| ATCAACAACAGGTTCCAACA+AGG | 0.686562 | contig549end:+6804 | MsG0080048933.01.T01:intron |
| GGAGAATTGGAGGAAGACGA+TGG | 0.696314 | contig549end:+6227 | MsG0080048933.01.T01:CDS |
| TCAGGACCTATCACCTGACG+TGG | 0.706707 | contig549end:-6275 | None:intergenic |
| AACAACAGGTTCCAACAAGG+AGG | 0.706807 | contig549end:+6807 | MsG0080048933.01.T01:intron |
| CTTCGGTGGAAACCATAGTG+AGG | 0.709928 | contig549end:-6475 | None:intergenic |
| TCGGGTAACCAACCTCTCGG+AGG | 0.730211 | contig549end:+7110 | MsG0080048933.01.T01:CDS |
| GACGCCGTTCATGAAGACGT+CGG | 0.745318 | contig549end:+6446 | MsG0080048933.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACTTTAGATGATGAATTACT+GGG | + | contig549end:6674-6693 | MsG0080048933.01.T01:intron | 25.0% |
| ! | TACTTTAGATGATGAATTAC+TGG | + | contig549end:6673-6692 | MsG0080048933.01.T01:intron | 25.0% |
| ! | TGATGAAAATGGAATCAAAA+GGG | + | contig549end:6295-6314 | MsG0080048933.01.T01:CDS | 25.0% |
| !! | GTAATTCATCATCTAAAGTA+AGG | - | contig549end:6673-6692 | None:intergenic | 25.0% |
| ATCAACAAACTCAATGGATA+TGG | + | contig549end:7276-7295 | MsG0080048933.01.T01:CDS | 30.0% | |
| CTGATGAAAATGGAATCAAA+AGG | + | contig549end:6294-6313 | MsG0080048933.01.T01:CDS | 30.0% | |
| CTTTATTGAATTGAGACAGT+GGG | - | contig549end:6849-6868 | None:intergenic | 30.0% | |
| ! | TTCATCATCTAAAGTAAGGA+AGG | - | contig549end:6669-6688 | None:intergenic | 30.0% |
| !! | ATTCGATGATGATGGTAATA+AGG | + | contig549end:6331-6350 | MsG0080048933.01.T01:CDS | 30.0% |
| !! | CTTTTGATTCCATTTTCATC+AGG | - | contig549end:6296-6315 | None:intergenic | 30.0% |
| !! | TAAAGAGAAAAAGTACCAAG+TGG | - | contig549end:6524-6543 | None:intergenic | 30.0% |
| ATGCTACAATAGACTAGACT+AGG | - | contig549end:6755-6774 | None:intergenic | 35.0% | |
| CACAATCACACAAGAATGTT+CGG | + | contig549end:6624-6643 | MsG0080048933.01.T01:intron | 35.0% | |
| CCACTGTCTCAATTCAATAA+AGG | + | contig549end:6847-6866 | MsG0080048933.01.T01:CDS | 35.0% | |
| CCTTTATTGAATTGAGACAG+TGG | - | contig549end:6850-6869 | None:intergenic | 35.0% | |
| CTTTGTGAACTTTGTTAGCA+GGG | + | contig549end:7236-7255 | MsG0080048933.01.T01:CDS | 35.0% | |
| GAGTACAAATTCGATGATGA+TGG | + | contig549end:6323-6342 | MsG0080048933.01.T01:CDS | 35.0% | |
| GGTTTATCAACAAAAGTCTC+AGG | - | contig549end:6958-6977 | None:intergenic | 35.0% | |
| TCATGATCTGTATCAACAAC+AGG | + | contig549end:6793-6812 | MsG0080048933.01.T01:intron | 35.0% | |
| TTATCAACAAAAGTCTCAGG+CGG | - | contig549end:6955-6974 | None:intergenic | 35.0% | |
| ! | GTTGCTATTGATCAAAAGAC+TGG | + | contig549end:7195-7214 | MsG0080048933.01.T01:CDS | 35.0% |
| !! | AAAAAGTACCAAGTGGTTTG+GGG | - | contig549end:6517-6536 | None:intergenic | 35.0% |
| !! | AGAAAAAGTACCAAGTGGTT+TGG | - | contig549end:6519-6538 | None:intergenic | 35.0% |
| !! | CAATAAAGGTGCTGTTCTTA+TGG | + | contig549end:6861-6880 | MsG0080048933.01.T01:CDS | 35.0% |
| !! | GAAAAAGTACCAAGTGGTTT+GGG | - | contig549end:6518-6537 | None:intergenic | 35.0% |
| AGGGCTATCAACAAACTCAA+TGG | + | contig549end:7270-7289 | MsG0080048933.01.T01:CDS | 40.0% | |
| ATCAAAAGACTGGCATGAGT+AGG | + | contig549end:7205-7224 | MsG0080048933.01.T01:CDS | 40.0% | |
| ATCAACAACAGGTTCCAACA+AGG | + | contig549end:6804-6823 | MsG0080048933.01.T01:intron | 40.0% | |
| ATCTCATCCTGAGAGTTGAA+TGG | + | contig549end:7307-7326 | MsG0080048933.01.T01:CDS | 40.0% | |
| GAACGATGAGAATTCTGTTC+GGG | + | contig549end:7092-7111 | MsG0080048933.01.T01:CDS | 40.0% | |
| GCTTTGTGAACTTTGTTAGC+AGG | + | contig549end:7235-7254 | MsG0080048933.01.T01:CDS | 40.0% | |
| GGAACGATGAGAATTCTGTT+CGG | + | contig549end:7091-7110 | MsG0080048933.01.T01:CDS | 40.0% | |
| GTGATAGGTCCTGATGAAAA+TGG | + | contig549end:6284-6303 | MsG0080048933.01.T01:CDS | 40.0% | |
| TCAAAAGACTGGCATGAGTA+GGG | + | contig549end:7206-7225 | MsG0080048933.01.T01:CDS | 40.0% | |
| TCTCATCCTGAGAGTTGAAT+GGG | + | contig549end:7308-7327 | MsG0080048933.01.T01:CDS | 40.0% | |
| ! | GACTTCAAGGTGTCCATATA+AGG | + | contig549end:6918-6937 | MsG0080048933.01.T01:CDS | 40.0% |
| !!! | CTGATTTGCTTGAGCTTTTC+CGG | + | contig549end:7145-7164 | MsG0080048933.01.T01:CDS | 40.0% |
| AACAACAGGTTCCAACAAGG+AGG | + | contig549end:6807-6826 | MsG0080048933.01.T01:intron | 45.0% | |
| ACTAGTTATCTAGCGACCAG+GGG | + | contig549end:6596-6615 | MsG0080048933.01.T01:intron | 45.0% | |
| AGGGTGATCATTGGACTTCA+AGG | + | contig549end:6905-6924 | MsG0080048933.01.T01:CDS | 45.0% | |
| AGTCTTTGGATCCTCCTTGT+TGG | - | contig549end:6821-6840 | None:intergenic | 45.0% | |
| CAAAAGACTGGCATGAGTAG+GGG | + | contig549end:7207-7226 | MsG0080048933.01.T01:CDS | 45.0% | |
| CGGAAAAGCTCAAGCAAATC+AGG | - | contig549end:7147-7166 | None:intergenic | 45.0% | |
| CTTATGGTATGCAGGACTTG+CGG | + | contig549end:6877-6896 | MsG0080048933.01.T01:CDS | 45.0% | |
| GTGTGATTGTGTAAATCCCC+TGG | - | contig549end:6615-6634 | None:intergenic | 45.0% | |
| TACATATGCACCCTTTGCTG+AGG | - | contig549end:7016-7035 | None:intergenic | 45.0% | |
| TTATGGTATGCAGGACTTGC+GGG | + | contig549end:6878-6897 | MsG0080048933.01.T01:CDS | 45.0% | |
| ! | AGACTAGTTATCTAGCGACC+AGG | + | contig549end:6594-6613 | MsG0080048933.01.T01:intron | 45.0% |
| ! | GACTAGTTATCTAGCGACCA+GGG | + | contig549end:6595-6614 | MsG0080048933.01.T01:intron | 45.0% |
| ! | GTGCTGTTCTTATGGTATGC+AGG | + | contig549end:6869-6888 | MsG0080048933.01.T01:CDS | 45.0% |
| ACCCTACTGACAGCACCAAA+AGG | - | contig549end:7171-7190 | None:intergenic | 50.0% | |
| CTTCGGTGGAAACCATAGTG+AGG | - | contig549end:6478-6497 | None:intergenic | 50.0% | |
| GAAGCTAAGGTGGGGAGAAT+TGG | + | contig549end:6214-6233 | MsG0080048933.01.T01:CDS | 50.0% | |
| GCGTTCGAGAAGGATCTCTT+CGG | - | contig549end:6495-6514 | None:intergenic | 50.0% | |
| GGAGAATTGGAGGAAGACGA+TGG | + | contig549end:6227-6246 | MsG0080048933.01.T01:CDS | 50.0% | |
| GGCTGTGCGAGATCCTTATA+TGG | - | contig549end:6934-6953 | None:intergenic | 50.0% | |
| TACTGACAGCACCAAAAGGC+CGG | - | contig549end:7167-7186 | None:intergenic | 50.0% | |
| TAGCAGGGAAGATGCTCAGA+GGG | + | contig549end:7251-7270 | MsG0080048933.01.T01:CDS | 50.0% | |
| TGTTCGGGTAACCAACCTCT+CGG | + | contig549end:7107-7126 | MsG0080048933.01.T01:CDS | 50.0% | |
| TTACCACCACGTCAGGTGAT+AGG | + | contig549end:6269-6288 | MsG0080048933.01.T01:CDS | 50.0% | |
| TTAGCAGGGAAGATGCTCAG+AGG | + | contig549end:7250-7269 | MsG0080048933.01.T01:CDS | 50.0% | |
| TTCGAGAAGGATCTCTTCGG+TGG | - | contig549end:6492-6511 | None:intergenic | 50.0% | |
| TTGCAACAGATGCTGCTCCT+GGG | + | contig549end:6980-6999 | MsG0080048933.01.T01:CDS | 50.0% | |
| TTTCCTGTTACCACCACGTC+AGG | + | contig549end:6262-6281 | MsG0080048933.01.T01:CDS | 50.0% | |
| ! | CTTGAGCTTTTCCGGCCTTT+TGG | + | contig549end:7153-7172 | MsG0080048933.01.T01:CDS | 50.0% |
| !!! | GCCTTTTGGTGCTGTCAGTA+GGG | + | contig549end:7167-7186 | MsG0080048933.01.T01:CDS | 50.0% |
| ACTGGCATGAGTAGGGGCTT+TGG | + | contig549end:7213-7232 | MsG0080048933.01.T01:CDS | 55.0% | |
| AGTCTGAACCGGCGAAGCTA+AGG | + | contig549end:6201-6220 | MsG0080048933.01.T01:CDS | 55.0% | |
| ATGCAGGACTTGCGGGAAGA+AGG | + | contig549end:6885-6904 | MsG0080048933.01.T01:CDS | 55.0% | |
| CAACCTCTCGGAGGACACAA+GGG | + | contig549end:7119-7138 | MsG0080048933.01.T01:CDS | 55.0% | |
| CGGTGGAAACCATAGTGAGG+CGG | - | contig549end:6475-6494 | None:intergenic | 55.0% | |
| CTCCGAACTTAGGCCAGGAA+CGG | - | contig549end:6427-6446 | None:intergenic | 55.0% | |
| GACAGTGGGTCAGCAGTCTT+TGG | - | contig549end:6835-6854 | None:intergenic | 55.0% | |
| GACGCCGTTCATGAAGACGT+CGG | + | contig549end:6446-6465 | MsG0080048933.01.T01:CDS | 55.0% | |
| GCGGGAAGAAGGGTGATCAT+TGG | + | contig549end:6896-6915 | MsG0080048933.01.T01:CDS | 55.0% | |
| GCTAAGGTGGGGAGAATTGG+AGG | + | contig549end:6217-6236 | MsG0080048933.01.T01:CDS | 55.0% | |
| GCTTCAGCTGCCTCAGCAAA+GGG | + | contig549end:7003-7022 | MsG0080048933.01.T01:CDS | 55.0% | |
| GGAAGACGATGGCGAAGATC+TGG | + | contig549end:6238-6257 | MsG0080048933.01.T01:CDS | 55.0% | |
| GGAGCAGCATCTGTTGCAAC+AGG | - | contig549end:6979-6998 | None:intergenic | 55.0% | |
| GGCGGCAATTCAGTCTGAAC+CGG | + | contig549end:6190-6209 | MsG0080048933.01.T01:CDS | 55.0% | |
| GGTGGAAACCATAGTGAGGC+GGG | - | contig549end:6474-6493 | None:intergenic | 55.0% | |
| GTTGCAACAGATGCTGCTCC+TGG | + | contig549end:6979-6998 | MsG0080048933.01.T01:CDS | 55.0% | |
| TCACCTGACGTGGTGGTAAC+AGG | - | contig549end:6268-6287 | None:intergenic | 55.0% | |
| TCAGGACCTATCACCTGACG+TGG | - | contig549end:6278-6297 | None:intergenic | 55.0% | |
| TGAACCGGCGAAGCTAAGGT+GGG | + | contig549end:6205-6224 | MsG0080048933.01.T01:CDS | 55.0% | |
| TGAACGGCGTCTCCGAACTT+AGG | - | contig549end:6437-6456 | None:intergenic | 55.0% | |
| TGCAACAGATGCTGCTCCTG+GGG | + | contig549end:6981-7000 | MsG0080048933.01.T01:CDS | 55.0% | |
| TGCAGGACTTGCGGGAAGAA+GGG | + | contig549end:6886-6905 | MsG0080048933.01.T01:CDS | 55.0% | |
| !! | CTACTGGCTCTGACATGAGG+CGG | + | contig549end:7067-7086 | MsG0080048933.01.T01:CDS | 55.0% |
| !! | GGACTACTGGCTCTGACATG+AGG | + | contig549end:7064-7083 | MsG0080048933.01.T01:CDS | 55.0% |
| !! | GGCACCGACGTCTTCATGAA+CGG | - | contig549end:6453-6472 | None:intergenic | 55.0% |
| !!! | GGCCTTTTGGTGCTGTCAGT+AGG | + | contig549end:7166-7185 | MsG0080048933.01.T01:CDS | 55.0% |
| CCAACCTCTCGGAGGACACA+AGG | + | contig549end:7118-7137 | MsG0080048933.01.T01:CDS | 60.0% | |
| CCTTGTGTCCTCCGAGAGGT+TGG | - | contig549end:7121-7140 | None:intergenic | 60.0% | |
| CGCCGTTCCTGGCCTAAGTT+CGG | + | contig549end:6422-6441 | MsG0080048933.01.T01:CDS | 60.0% | |
| CTCGAACGCCCCAAACCACT+TGG | + | contig549end:6506-6525 | MsG0080048933.01.T01:CDS | 60.0% | |
| CTGAACCGGCGAAGCTAAGG+TGG | + | contig549end:6204-6223 | MsG0080048933.01.T01:CDS | 60.0% | |
| GAACCGGCGAAGCTAAGGTG+GGG | + | contig549end:6206-6225 | MsG0080048933.01.T01:CDS | 60.0% | |
| GGACCTATCACCTGACGTGG+TGG | - | contig549end:6275-6294 | None:intergenic | 60.0% | |
| GGCAAGTTTGCGGGTTCGAG+TGG | - | contig549end:6372-6391 | None:intergenic | 60.0% | |
| GGCTTCAGCTGCCTCAGCAA+AGG | + | contig549end:7002-7021 | MsG0080048933.01.T01:CDS | 60.0% | |
| GGGTGGCCCATTCAACTCTC+AGG | - | contig549end:7317-7336 | None:intergenic | 60.0% | |
| GTACCTCCTAGCCTGAGAGC+TGG | + | contig549end:7033-7052 | MsG0080048933.01.T01:CDS | 60.0% | |
| TCCTAGCCTGAGAGCTGGTG+CGG | + | contig549end:7038-7057 | MsG0080048933.01.T01:CDS | 60.0% | |
| TCGGGTAACCAACCTCTCGG+AGG | + | contig549end:7110-7129 | MsG0080048933.01.T01:CDS | 60.0% | |
| TCTCCCCACCTTAGCTTCGC+CGG | - | contig549end:6212-6231 | None:intergenic | 60.0% | |
| ! | ACGCGCGTTGGCAAGTTTGC+GGG | - | contig549end:6381-6400 | None:intergenic | 60.0% |
| ! | GACGCGCGTTGGCAAGTTTG+CGG | - | contig549end:6382-6401 | None:intergenic | 60.0% |
| ! | GTGGTTTGGGGCGTTCGAGA+AGG | - | contig549end:6505-6524 | None:intergenic | 60.0% |
| AGGCCAGGAACGGCGCTCAA+CGG | - | contig549end:6417-6436 | None:intergenic | 65.0% | |
| GCACCAGCTCTCAGGCTAGG+AGG | - | contig549end:7039-7058 | None:intergenic | 65.0% | |
| GCTCCCTTGTGTCCTCCGAG+AGG | - | contig549end:7125-7144 | None:intergenic | 65.0% | |
| GCTGGTGCGGAGAGGACTAC+TGG | + | contig549end:7051-7070 | MsG0080048933.01.T01:CDS | 65.0% | |
| GGCGTCTCCGAACTTAGGCC+AGG | - | contig549end:6432-6451 | None:intergenic | 65.0% | |
| TCCGCACCAGCTCTCAGGCT+AGG | - | contig549end:7042-7061 | None:intergenic | 65.0% | |
| TCCTCTCCGCACCAGCTCTC+AGG | - | contig549end:7047-7066 | None:intergenic | 65.0% | |
| ! | GCGTTTGCTGAGACGCGCGT+TGG | - | contig549end:6393-6412 | None:intergenic | 65.0% |
| !! | CTGGCTCTGACATGAGGCGG+AGG | + | contig549end:7070-7089 | MsG0080048933.01.T01:CDS | 65.0% |
| GCCTGAGAGCTGGTGCGGAG+AGG | + | contig549end:7043-7062 | MsG0080048933.01.T01:CDS | 70.0% | |
| GCTGAGGCAGCTGAAGCCCC+AGG | - | contig549end:7000-7019 | None:intergenic | 70.0% | |
| ! | CGTCGGTGCCCGCCTCACTA+TGG | + | contig549end:6463-6482 | MsG0080048933.01.T01:CDS | 70.0% |
| ! | GCGCCGTTGAGCGCCGTTCC+TGG | + | contig549end:6411-6430 | MsG0080048933.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig549end | gene | 6185 | 7350 | 6185 | ID=MsG0080048933.01;Name=MsG0080048933.01 |
| contig549end | mRNA | 6185 | 7350 | 6185 | ID=MsG0080048933.01.T01;Parent=MsG0080048933.01;Name=MsG0080048933.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|292 |
| contig549end | exon | 6185 | 6527 | 6185 | ID=MsG0080048933.01.T01:exon:58941;Parent=MsG0080048933.01.T01 |
| contig549end | exon | 6815 | 7350 | 6815 | ID=MsG0080048933.01.T01:exon:58942;Parent=MsG0080048933.01.T01 |
| contig549end | CDS | 6185 | 6527 | 6185 | ID=MsG0080048933.01.T01:cds;Parent=MsG0080048933.01.T01 |
| contig549end | CDS | 6815 | 7350 | 6815 | ID=MsG0080048933.01.T01:cds;Parent=MsG0080048933.01.T01 |
| Gene Sequence |
| Protein sequence |
