AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002680.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002680.01.T01 MTR_1g051385 80.892 314 14 2 10 277 197 510 2.45e-179 506
MsG0180002680.01.T01 MTR_1g051385 80.892 314 14 2 10 277 294 607 2.76e-178 508
MsG0180002680.01.T01 MTR_5g081250 38.782 312 121 6 10 277 245 530 2.29e-61 205
MsG0180002680.01.T01 MTR_5g081250 38.762 307 118 6 10 272 245 525 5.62e-61 203
MsG0180002680.01.T01 MTR_3g069160 42.395 309 125 8 10 277 291 587 4.01e-59 200
MsG0180002680.01.T01 MTR_3g069160 41.368 307 114 7 10 277 105 384 6.19e-59 194
MsG0180002680.01.T01 MTR_3g069160 41.368 307 114 7 10 277 241 520 3.63e-57 193
MsG0180002680.01.T01 MTR_3g069180 41.368 307 114 7 10 277 291 570 2.21e-56 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002680.01.T01 AT3G10160 52.303 304 106 6 10 277 312 612 4.87e-96 297
MsG0180002680.01.T01 AT5G05980 40.264 303 109 7 10 277 235 500 5.20e-58 195
MsG0180002680.01.T01 AT5G05980 40.264 303 109 8 10 277 293 558 1.53e-57 195
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 105 345 1.21e-50 172
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 217 457 1.14e-49 172
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 182 422 1.31e-49 171
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 182 422 1.31e-49 171
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 182 422 1.31e-49 171
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 238 478 2.41e-49 172
MsG0180002680.01.T01 AT3G55630 39.437 284 113 8 10 277 239 479 2.46e-49 172

Find 68 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTGTGGAAGCAAAATTT+TGG 0.159013 1:+42930976 None:intergenic
AATTTAACCTTCAAAGAATA+TGG 0.205054 1:-42930070 MsG0180002680.01.T01:CDS
CATTGCCATTGACAATAAAA+TGG 0.243374 1:-42929501 MsG0180002680.01.T01:CDS
GGCTTCAGAGAACAGGAAAT+TGG 0.275782 1:-42931967 MsG0180002680.01.T01:CDS
GGATTAAAGTTCTGTTTATC+TGG 0.315591 1:-42932040 MsG0180002680.01.T01:CDS
TTGCCAGATGAATTTATTAG+AGG 0.366395 1:-42931504 MsG0180002680.01.T01:CDS
TTCATTTGTTTACAATCTAA+AGG 0.385976 1:+42932064 None:intergenic
TCTTCTCCCATATTCTTTGA+AGG 0.391099 1:+42930063 None:intergenic
TTTATTGTCAATGGCAATGA+AGG 0.404522 1:+42929505 None:intergenic
GAAGGTTAAATTGCCATGAT+AGG 0.406871 1:+42930081 None:intergenic
TTTAGATTGTAAACAAATGA+AGG 0.411217 1:-42932062 MsG0180002680.01.T01:CDS
GCACATGCCTCCATGCTCTC+TGG 0.415035 1:+42931351 None:intergenic
CTCACCTGAAGTCTTGTTGA+TGG 0.424925 1:+42929454 None:intergenic
ACACCCATCAACAAGACTTC+AGG 0.427459 1:-42929458 MsG0180002680.01.T01:intron
AAGTACACTAAGGTTACTTC+TGG 0.439062 1:-42930140 MsG0180002680.01.T01:CDS
TATGCATGGTGCATAGGTTA+TGG 0.444010 1:-42925074 MsG0180002680.01.T01:CDS
ATTTAACCTTCAAAGAATAT+GGG 0.448933 1:-42930069 MsG0180002680.01.T01:CDS
AGACCTCTAATAAATTCATC+TGG 0.451955 1:+42931501 None:intergenic
GCTTCAGAGAACAGGAAATT+GGG 0.459715 1:-42931966 MsG0180002680.01.T01:CDS
AGATGCTGGCTTCAGAGAAC+AGG 0.463002 1:-42931974 MsG0180002680.01.T01:CDS
TTTATATGATAATGCTTCAA+AGG 0.463285 1:-42929569 MsG0180002680.01.T01:CDS
CAAGAGCAGCATTATATAGT+TGG 0.469646 1:+42932011 None:intergenic
TTAATCACAACCATCAGATC+AGG 0.471524 1:+42925099 None:intergenic
CATTGACAATAAAATGGTTG+AGG 0.476572 1:-42929495 MsG0180002680.01.T01:CDS
GTGAACAAATGTGCTTCGTC+AGG 0.487719 1:-42930953 MsG0180002680.01.T01:intron
GCCGCAGACGGCAAAAGTTA+TGG 0.490956 1:+42925043 None:intergenic
TTATATGATAATGCTTCAAA+GGG 0.491518 1:-42929568 MsG0180002680.01.T01:CDS
CAGTCTCAATCTCTAGATGC+TGG 0.502398 1:-42931988 MsG0180002680.01.T01:CDS
TAAATGGCTGCAGGTTCCAC+TGG 0.503014 1:-42932106 MsG0180002680.01.T01:CDS
CTGTACAGTGTGAGAGAAGA+GGG 0.507912 1:-42925179 MsG0180002680.01.T01:intron
AGCTCATAGTCCAGAGAGCA+TGG 0.519318 1:-42931361 MsG0180002680.01.T01:CDS
GGAGAAGATTATGCATGGGA+AGG 0.527269 1:-42930048 MsG0180002680.01.T01:CDS
TCACCTGAAGTCTTGTTGAT+GGG 0.531972 1:+42929455 None:intergenic
ATTGACAATAAAATGGTTGA+GGG 0.534001 1:-42929494 MsG0180002680.01.T01:CDS
CAGTGTGAGAGAAGAGGGAG+TGG 0.546177 1:-42925174 MsG0180002680.01.T01:CDS
TTAACTTATGCATGGTGCAT+AGG 0.550179 1:-42925080 MsG0180002680.01.T01:CDS
TCAGTGGGATAGACCTATCA+TGG 0.551648 1:-42930094 MsG0180002680.01.T01:CDS
TTAGATTGTAAACAAATGAA+GGG 0.552350 1:-42932061 MsG0180002680.01.T01:CDS
TGAAAATTGTGGCGGAGAGT+TGG 0.555248 1:-42931400 MsG0180002680.01.T01:CDS
GAGTATGTCAAAGTACACTA+AGG 0.558303 1:-42930150 MsG0180002680.01.T01:CDS
TTGGGACGTACATTATTGCA+TGG 0.558863 1:+42925002 None:intergenic
AATGACCACTTTGCTTGACA+AGG 0.564323 1:-42929635 MsG0180002680.01.T01:CDS
GAAGGTATTACTGCACTGCA+TGG 0.571747 1:+42929523 None:intergenic
TTATTCCTTCTGATCTCAGT+GGG 0.572044 1:-42930109 MsG0180002680.01.T01:CDS
CAAATCCTTGTCAAGCAAAG+TGG 0.575079 1:+42929630 None:intergenic
GAGAGTATGTCTGAAAATTG+TGG 0.575351 1:-42931411 MsG0180002680.01.T01:CDS
TCTATCCCACTGAGATCAGA+AGG 0.577065 1:+42930104 None:intergenic
TATGATAATGCTTCAAAGGG+AGG 0.580173 1:-42929565 MsG0180002680.01.T01:CDS
TACACGTGTCCCTGATCTGA+TGG 0.586981 1:-42925109 MsG0180002680.01.T01:CDS
ATATGGGAGAAGATTATGCA+TGG 0.590117 1:-42930053 MsG0180002680.01.T01:CDS
GCACATTTGTTCACTAACTG+TGG 0.600612 1:+42930962 None:intergenic
TGGTTGTGATGCAAAACAAT+GGG 0.603041 1:-42925154 MsG0180002680.01.T01:CDS
CATGGAAAATCGCTGTGGGA+AGG 0.606122 1:+42929541 None:intergenic
CACTGCATGGAAAATCGCTG+TGG 0.612514 1:+42929536 None:intergenic
TCTGTACAGTGTGAGAGAAG+AGG 0.613792 1:-42925180 MsG0180002680.01.T01:intron
GGTTGTGATTAACTTATGCA+TGG 0.617874 1:-42925088 MsG0180002680.01.T01:CDS
GAGAAGATTATGCATGGGAA+GGG 0.622405 1:-42930047 MsG0180002680.01.T01:intron
AGTAACTTCGTAACTTCCAG+TGG 0.624245 1:+42932090 None:intergenic
TATGGGAGAAGATTATGCAT+GGG 0.627145 1:-42930052 MsG0180002680.01.T01:CDS
TAATCACAACCATCAGATCA+GGG 0.632037 1:+42925100 None:intergenic
TACTGTAGTACCGCCGCAGA+CGG 0.635765 1:+42925031 None:intergenic
GTTATTCCTTCTGATCTCAG+TGG 0.642171 1:-42930110 MsG0180002680.01.T01:CDS
ACTGCATGGAAAATCGCTGT+GGG 0.650313 1:+42929537 None:intergenic
GTGGTTGTGATGCAAAACAA+TGG 0.657078 1:-42925155 MsG0180002680.01.T01:CDS
GCATGGAGGCATGTGCAAAG+TGG 0.671275 1:-42931344 MsG0180002680.01.T01:CDS
AGTATGTCTGAAAATTGTGG+CGG 0.711786 1:-42931408 MsG0180002680.01.T01:CDS
GTCTGCGGCGGTACTACAGT+AGG 0.720063 1:-42925029 MsG0180002680.01.T01:CDS
TCATAGTCCAGAGAGCATGG+AGG 0.752128 1:-42931358 MsG0180002680.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAATTTAATATTTA+CGG - Chr1:42926275-42926294 MsG0180002680.01.T01:intron 0.0%
!! AAGTAAGAAAATATATAAAA+CGG + Chr1:42926848-42926867 None:intergenic 10.0%
!! TAATAATAATATCAGTAATT+AGG - Chr1:42925295-42925314 MsG0180002680.01.T01:intron 10.0%
!! TATAAAATCTATTTATTTGT+GGG - Chr1:42928767-42928786 MsG0180002680.01.T01:intron 10.0%
!! TTATAAAATCTATTTATTTG+TGG - Chr1:42928766-42928785 MsG0180002680.01.T01:intron 10.0%
!!! CAAATAAATAGATTTTATAA+CGG + Chr1:42928766-42928785 None:intergenic 10.0%
!!! TAATTAGATTTTAATGATTT+TGG - Chr1:42925391-42925410 MsG0180002680.01.T01:intron 10.0%
!! ATGAAATTATTATTGTTAGA+TGG - Chr1:42930785-42930804 MsG0180002680.01.T01:intron 15.0%
!! TAATTAAACATTTGAATGTA+TGG + Chr1:42925377-42925396 None:intergenic 15.0%
!! TACGAAAAAATTATAATATG+AGG + Chr1:42928803-42928822 None:intergenic 15.0%
!! TTATCATATAAAAATTCATG+AGG + Chr1:42927540-42927559 None:intergenic 15.0%
!!! AGTGTTTTTTAAAATGAAAT+CGG + Chr1:42929937-42929956 None:intergenic 15.0%
!!! AGTTGTTTTTAAAATGAAAT+CGG + Chr1:42929450-42929469 None:intergenic 15.0%
!!! ATTTTCTTTTTCATCAATTA+AGG - Chr1:42931112-42931131 MsG0180002680.01.T01:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + Chr1:42929710-42929729 None:intergenic 15.0%
!!! TACTTTTTTATTTTGACTTT+CGG - Chr1:42926210-42926229 MsG0180002680.01.T01:intron 15.0%
!!! TTGTTCTTTAAAAATAAGTT+CGG - Chr1:42931749-42931768 MsG0180002680.01.T01:intron 15.0%
!!! TTTTCTTTTTCATCAATTAA+GGG - Chr1:42931113-42931132 MsG0180002680.01.T01:intron 15.0%
!! AAACCAAAATAATTGTCTAA+TGG - Chr1:42930894-42930913 MsG0180002680.01.T01:intron 20.0%
!! AAACCATAATTATGGTTTAA+TGG - Chr1:42930713-42930732 MsG0180002680.01.T01:intron 20.0%
!! AAACCATTAAACCATAATTA+TGG + Chr1:42930719-42930738 None:intergenic 20.0%
!! AAACCATTAAGTACATATAA+TGG + Chr1:42931089-42931108 None:intergenic 20.0%
!! AAACCATTATATGTACTTAA+TGG - Chr1:42931083-42931102 MsG0180002680.01.T01:intron 20.0%
!! AAATTGGGAAAATTGAAAAA+AGG + Chr1:42925967-42925986 None:intergenic 20.0%
!! AATTTAACCTTCAAAGAATA+TGG - Chr1:42927047-42927066 MsG0180002680.01.T01:intron 20.0%
!! AGAAAATATATAAAACGGTT+AGG + Chr1:42926843-42926862 None:intergenic 20.0%
!! AGAAATAATAAAACAAGGAA+TGG - Chr1:42926814-42926833 MsG0180002680.01.T01:intron 20.0%
!! ATAATTAATGAATACCAACA+AGG + Chr1:42925351-42925370 None:intergenic 20.0%
!! ATTTAACCTTCAAAGAATAT+GGG - Chr1:42927048-42927067 MsG0180002680.01.T01:intron 20.0%
!! CAGAAAGAAATAATAAAACA+AGG - Chr1:42926809-42926828 MsG0180002680.01.T01:intron 20.0%
!! TAATTAATGAATACCAACAA+GGG + Chr1:42925350-42925369 None:intergenic 20.0%
!! TATTACTGAAACCATAATTA+TGG - Chr1:42930705-42930724 MsG0180002680.01.T01:intron 20.0%
!! TTAAATTGAAGTATACCAAT+TGG - Chr1:42928436-42928455 MsG0180002680.01.T01:intron 20.0%
!! TTAGATTGTAAACAAATGAA+GGG - Chr1:42925056-42925075 MsG0180002680.01.T01:CDS 20.0%
!! TTCATTTGTTTACAATCTAA+AGG + Chr1:42925056-42925075 None:intergenic 20.0%
!! TTTAGATTGTAAACAAATGA+AGG - Chr1:42925055-42925074 MsG0180002680.01.T01:CDS 20.0%
!!! AAACCATTAGACAATTATTT+TGG + Chr1:42930900-42930919 None:intergenic 20.0%
!!! AAAGTATGTGTTATTTGTTT+TGG - Chr1:42928124-42928143 MsG0180002680.01.T01:intron 20.0%
!!! AAGTCAGTTTAATTCTTTTT+GGG - Chr1:42927894-42927913 MsG0180002680.01.T01:intron 20.0%
!!! AATAAGTTGTTTTGAATAAG+CGG + Chr1:42928904-42928923 None:intergenic 20.0%
!!! ACTGTATTTTGTTTTCAAAA+CGG - Chr1:42931804-42931823 MsG0180002680.01.T01:intron 20.0%
!!! AGTTGTTTTTAAAATGAGAT+CGG + Chr1:42928945-42928964 None:intergenic 20.0%
!!! CTCTGAAATCATTAAAATAA+TGG + Chr1:42928492-42928511 None:intergenic 20.0%
!!! TAAGTTTTAAAGTTCAGTAA+CGG - Chr1:42927255-42927274 MsG0180002680.01.T01:intron 20.0%
!!! TAGATTTTAATGATTTTGGA+GGG - Chr1:42925395-42925414 MsG0180002680.01.T01:intron 20.0%
!!! TAGCATTTTACTAACAAATT+GGG + Chr1:42925982-42926001 None:intergenic 20.0%
!!! TTAAATCTTCTTTTTAGTCA+TGG + Chr1:42931379-42931398 None:intergenic 20.0%
!!! TTAAGTACATATAATGGTTT+TGG + Chr1:42931083-42931102 None:intergenic 20.0%
!!! TTAGATTTTAATGATTTTGG+AGG - Chr1:42925394-42925413 MsG0180002680.01.T01:intron 20.0%
!!! TTAGTTTTTAACTGTACATT+AGG - Chr1:42925573-42925592 MsG0180002680.01.T01:intron 20.0%
!!! TTATAATATGAGGCTTTATT+AGG + Chr1:42928793-42928812 None:intergenic 20.0%
!!! TTATATGATAATGCTTCAAA+GGG - Chr1:42927549-42927568 MsG0180002680.01.T01:intron 20.0%
!!! TTTATATGATAATGCTTCAA+AGG - Chr1:42927548-42927567 MsG0180002680.01.T01:intron 20.0%
!!! TTTGACAATATCTCATATTT+TGG + Chr1:42928030-42928049 None:intergenic 20.0%
!!! TTTTGTGTTGGTAAAAAAAA+TGG + Chr1:42931252-42931271 None:intergenic 20.0%
! AAACCAAGATAATTGTGTAA+TGG - Chr1:42930756-42930775 MsG0180002680.01.T01:intron 25.0%
! AAACCATTACACAATTATCT+TGG + Chr1:42930762-42930781 None:intergenic 25.0%
! AAATAAACAAAACAATGTGC+AGG + Chr1:42927457-42927476 None:intergenic 25.0%
! AATGTAATTTCTACTCGAAT+AGG + Chr1:42928558-42928577 None:intergenic 25.0%
! ACATTTATGTTGTTATGGAT+AGG - Chr1:42926656-42926675 MsG0180002680.01.T01:intron 25.0%
! AGACATTTGAAAAATCTTGT+AGG - Chr1:42925907-42925926 MsG0180002680.01.T01:intron 25.0%
! AGTATCTTCAACTGAAATTA+AGG + Chr1:42927387-42927406 None:intergenic 25.0%
! AGTGAGAAAAAAGAAAATAC+TGG + Chr1:42925426-42925445 None:intergenic 25.0%
! ATATTTACGGACATGATATA+AGG - Chr1:42926288-42926307 MsG0180002680.01.T01:intron 25.0%
! ATGAGGTAATTATAGTAGAA+TGG + Chr1:42926724-42926743 None:intergenic 25.0%
! ATTAGCAAATGCAATTCATA+TGG + Chr1:42926038-42926057 None:intergenic 25.0%
! ATTATCTTTAGTTAATCTGC+TGG - Chr1:42926412-42926431 MsG0180002680.01.T01:intron 25.0%
! ATTGACAATAAAATGGTTGA+GGG - Chr1:42927623-42927642 MsG0180002680.01.T01:intron 25.0%
! CCAAAACAATATCTCATATT+TGG + Chr1:42927217-42927236 None:intergenic 25.0%
! GGAAAACATTTATGTTGTTA+TGG - Chr1:42926651-42926670 MsG0180002680.01.T01:intron 25.0%
! GTTAAAAACTAAAGTCAAAG+TGG + Chr1:42925565-42925584 None:intergenic 25.0%
! TACTACTATTAAGTCTTCTA+AGG + Chr1:42927411-42927430 None:intergenic 25.0%
! TCATATAAAAATTCATGAGG+TGG + Chr1:42927537-42927556 None:intergenic 25.0%
! TCTACACTTGGTAAAATAAA+GGG - Chr1:42926519-42926538 MsG0180002680.01.T01:intron 25.0%
! TTAATGAATTATGACCAACA+AGG + Chr1:42925251-42925270 None:intergenic 25.0%
!! CATTAAAATAATGGCCATTT+TGG + Chr1:42928483-42928502 None:intergenic 25.0%
!! CCAAATATGAGATATTGTTT+TGG - Chr1:42927214-42927233 MsG0180002680.01.T01:intron 25.0%
!! CTAGCATTTTACTAACAAAT+TGG + Chr1:42925983-42926002 None:intergenic 25.0%
!! GAAGTCAGTTTAATTCTTTT+TGG - Chr1:42927893-42927912 MsG0180002680.01.T01:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG + Chr1:42929037-42929056 None:intergenic 25.0%
!!! AGTCAAAATAAAAAAGTACC+AGG + Chr1:42926208-42926227 None:intergenic 25.0%
!!! ATTTTATAACGGACTTACTT+GGG + Chr1:42928755-42928774 None:intergenic 25.0%
!!! CAATTTGTTAGTAAAATGCT+AGG - Chr1:42925981-42926000 MsG0180002680.01.T01:intron 25.0%
!!! TGTGTATTATTTCTGAAATG+AGG + Chr1:42926741-42926760 None:intergenic 25.0%
!!! TTTGGTTCTAAAGAGTATAA+CGG - Chr1:42928142-42928161 MsG0180002680.01.T01:intron 25.0%
AAAGATACAACCTTGCAAAA+GGG + Chr1:42927827-42927846 None:intergenic 30.0%
AAATTAAGGAATTCTGCTAC+GGG + Chr1:42927373-42927392 None:intergenic 30.0%
AACCAAATTAATACACTCAC+CGG + Chr1:42927996-42928015 None:intergenic 30.0%
AACTTGAGAAAGTTCAGTAT+AGG - Chr1:42928631-42928650 MsG0180002680.01.T01:intron 30.0%
AAGTTTCTTGTTGAATTGTG+TGG - Chr1:42926588-42926607 MsG0180002680.01.T01:intron 30.0%
AGACCTCTAATAAATTCATC+TGG + Chr1:42925619-42925638 None:intergenic 30.0%
AGTACAACTCAAATGGTAAT+AGG + Chr1:42928247-42928266 None:intergenic 30.0%
ATCCGTTATAAGCATGAAAA+GGG - Chr1:42931772-42931791 MsG0180002680.01.T01:intron 30.0%
ATGAGATATTTGATATGCTG+GGG + Chr1:42928224-42928243 None:intergenic 30.0%
ATTTGAAAAATCTTGTAGGC+AGG - Chr1:42925911-42925930 MsG0180002680.01.T01:intron 30.0%
CATTGACAATAAAATGGTTG+AGG - Chr1:42927622-42927641 MsG0180002680.01.T01:intron 30.0%
CATTGCCATTGACAATAAAA+TGG - Chr1:42927616-42927635 MsG0180002680.01.T01:intron 30.0%
CGGTTAAAGAGAAAAATTTG+AGG + Chr1:42927741-42927760 None:intergenic 30.0%
CTCTAATATTAAAGCTGTGT+TGG - Chr1:42925516-42925535 MsG0180002680.01.T01:intron 30.0%
GAAATTAAGGAATTCTGCTA+CGG + Chr1:42927374-42927393 None:intergenic 30.0%
GATGAGATATTTGATATGCT+GGG + Chr1:42928225-42928244 None:intergenic 30.0%
GCAGTGTATTCTTCATTAAA+CGG - Chr1:42926386-42926405 MsG0180002680.01.T01:intron 30.0%
GGATTAAAGTTCTGTTTATC+TGG - Chr1:42925077-42925096 MsG0180002680.01.T01:CDS 30.0%
GTCTACACTTGGTAAAATAA+AGG - Chr1:42926518-42926537 MsG0180002680.01.T01:intron 30.0%
GTGTAGAAAACAATTATGCA+CGG + Chr1:42928710-42928729 None:intergenic 30.0%
GTGTAGAAAGCAATTATGTT+GGG + Chr1:42928732-42928751 None:intergenic 30.0%
TCCAATTCACAATTTCAAGA+GGG + Chr1:42926012-42926031 None:intergenic 30.0%
TGGATTATGAGTTTCTTTAC+TGG - Chr1:42930652-42930671 MsG0180002680.01.T01:intron 30.0%
TGTCATTAATCATCAGACTT+TGG - Chr1:42927285-42927304 MsG0180002680.01.T01:intron 30.0%
TGTCTTTCATGTAGCTAAAA+TGG - Chr1:42927169-42927188 MsG0180002680.01.T01:intron 30.0%
TTAGTTAATCTGCTGGAAAA+TGG - Chr1:42926419-42926438 MsG0180002680.01.T01:intron 30.0%
TTCTTTAGATCTAGGGATTA+TGG - Chr1:42931723-42931742 MsG0180002680.01.T01:intron 30.0%
TTGCCAGATGAATTTATTAG+AGG - Chr1:42925613-42925632 MsG0180002680.01.T01:intron 30.0%
TTTATTGTCAATGGCAATGA+AGG + Chr1:42927615-42927634 None:intergenic 30.0%
! AACGATGAATGTACTGATAA+TGG - Chr1:42927321-42927340 MsG0180002680.01.T01:intron 30.0%
! AACTGTACATTAGGATTTTC+AGG - Chr1:42925582-42925601 MsG0180002680.01.T01:intron 30.0%
! AACTGTGGAAGCAAAATTTT+GGG + Chr1:42926143-42926162 None:intergenic 30.0%
! AATATTATGCTAAGCCTTGT+TGG - Chr1:42925234-42925253 MsG0180002680.01.T01:intron 30.0%
! ACTTCAAAACTATTTTGCTG+TGG - Chr1:42930948-42930967 MsG0180002680.01.T01:intron 30.0%
! ATGCATTTTGTATCCCTTTA+CGG + Chr1:42925809-42925828 None:intergenic 30.0%
! CTCAACCATTTTATTGTCAA+TGG + Chr1:42927624-42927643 None:intergenic 30.0%
! GATTTTTACTAGAATGCACT+CGG + Chr1:42927761-42927780 None:intergenic 30.0%
! TAACTGTGGAAGCAAAATTT+TGG + Chr1:42926144-42926163 None:intergenic 30.0%
! TTCCCTTTTCATGCTTATAA+CGG + Chr1:42931777-42931796 None:intergenic 30.0%
! TTTCAACTGCCAATTTTTCT+GGG - Chr1:42925638-42925657 MsG0180002680.01.T01:intron 30.0%
! TTTGCACAAATAAGCTGTTT+TGG + Chr1:42929063-42929082 None:intergenic 30.0%
! TTTTCAAAACGGAGTGATTT+TGG - Chr1:42931815-42931834 MsG0180002680.01.T01:intron 30.0%
!! AAACTATTTTGCTGTGGATA+TGG - Chr1:42930954-42930973 MsG0180002680.01.T01:CDS 30.0%
!! AATGTATTGAAGTGTTGCTT+AGG - Chr1:42926914-42926933 MsG0180002680.01.T01:intron 30.0%
!! AGATGTAAAGAGTTTTGTGT+TGG + Chr1:42931264-42931283 None:intergenic 30.0%
!! AGATTTTTCAAATGTCTCCA+AGG + Chr1:42925904-42925923 None:intergenic 30.0%
!! ATCATCTTTTCAAGAGCTTT+AGG + Chr1:42928416-42928435 None:intergenic 30.0%
!! ATTGTCTAATGGTTTTGCTA+TGG - Chr1:42930905-42930924 MsG0180002680.01.T01:intron 30.0%
!! CACAAACGTTTTATTGAGAA+AGG + Chr1:42928325-42928344 None:intergenic 30.0%
!! CTTATGTTGACTTACTTACA+TGG - Chr1:42927708-42927727 MsG0180002680.01.T01:intron 30.0%
!! TACCATTTGAGTTGTACTTA+CGG - Chr1:42928249-42928268 MsG0180002680.01.T01:intron 30.0%
!! TTGTCTAATGGTTTTGCTAT+GGG - Chr1:42930906-42930925 MsG0180002680.01.T01:intron 30.0%
!! TTTAATGATTTTGGAGGGAT+TGG - Chr1:42925400-42925419 MsG0180002680.01.T01:intron 30.0%
!!! ATCTCATATTTTGGTTACAG+TGG + Chr1:42928021-42928040 None:intergenic 30.0%
!!! CAGTTTAATTCTTTTTGGGT+TGG - Chr1:42927898-42927917 MsG0180002680.01.T01:intron 30.0%
!!! GAGTTGGTATTTTATTTGGA+TGG - Chr1:42925733-42925752 MsG0180002680.01.T01:intron 30.0%
!!! GATATTGTTTTGGATCTTTC+TGG - Chr1:42927224-42927243 MsG0180002680.01.T01:intron 30.0%
!!! GATTTTATAACGGACTTACT+TGG + Chr1:42928756-42928775 None:intergenic 30.0%
!!! TTTTATAACGGACTTACTTG+GGG + Chr1:42928754-42928773 None:intergenic 30.0%
AAACCATTTCGACAGCAAAA+TGG + Chr1:42931046-42931065 None:intergenic 35.0%
AAAGCAATTGATACACTCAC+CGG + Chr1:42928056-42928075 None:intergenic 35.0%
AACTTCTATTGCAGCCAAAA+TGG - Chr1:42928466-42928485 MsG0180002680.01.T01:intron 35.0%
AAGTACACTAAGGTTACTTC+TGG - Chr1:42926977-42926996 MsG0180002680.01.T01:intron 35.0%
AATCAATGATGAACGTCAGA+AGG + Chr1:42926079-42926098 None:intergenic 35.0%
AATGCATCACAAACGTCTAT+TGG - Chr1:42925822-42925841 MsG0180002680.01.T01:intron 35.0%
ACACAGCAAACACTTAACAA+TGG + Chr1:42926773-42926792 None:intergenic 35.0%
ACCAAATTAATACACTCACC+GGG + Chr1:42927995-42928014 None:intergenic 35.0%
ACGTCTTCTTCTTTAGATCT+AGG - Chr1:42931715-42931734 MsG0180002680.01.T01:intron 35.0%
AGCATCAAACAACGAAAGAA+GGG + Chr1:42925498-42925517 None:intergenic 35.0%
AGGGAAGATGATTCATCATT+TGG - Chr1:42926472-42926491 MsG0180002680.01.T01:intron 35.0%
AGTATGTCTGAAAATTGTGG+CGG - Chr1:42925709-42925728 MsG0180002680.01.T01:intron 35.0%
ATATGGGAGAAGATTATGCA+TGG - Chr1:42927064-42927083 MsG0180002680.01.T01:intron 35.0%
ATGAGATATTGTCAAAACCC+CGG - Chr1:42928034-42928053 MsG0180002680.01.T01:intron 35.0%
ATGGCAAAAACAAGAAGACA+AGG + Chr1:42927950-42927969 None:intergenic 35.0%
CAAGAGCAGCATTATATAGT+TGG + Chr1:42925109-42925128 None:intergenic 35.0%
CGGAATTGGAAGAAGAATAT+TGG + Chr1:42931490-42931509 None:intergenic 35.0%
CGTCTTCTTCTTTAGATCTA+GGG - Chr1:42931716-42931735 MsG0180002680.01.T01:intron 35.0%
CTACAACCATTGGTAAGAAA+GGG + Chr1:42928355-42928374 None:intergenic 35.0%
CTCCAATTCACAATTTCAAG+AGG + Chr1:42926013-42926032 None:intergenic 35.0%
GAAAGATACAACCTTGCAAA+AGG + Chr1:42927828-42927847 None:intergenic 35.0%
GAAGGTTAAATTGCCATGAT+AGG + Chr1:42927039-42927058 None:intergenic 35.0%
GAGTATGTCAAAGTACACTA+AGG - Chr1:42926967-42926986 MsG0180002680.01.T01:intron 35.0%
GATCCGTTATAAGCATGAAA+AGG - Chr1:42931771-42931790 MsG0180002680.01.T01:intron 35.0%
GGATGAGATATTTGATATGC+TGG + Chr1:42928226-42928245 None:intergenic 35.0%
GGTAAAATAAAGGGATAGTG+TGG - Chr1:42926528-42926547 MsG0180002680.01.T01:intron 35.0%
GGTGTAGAAAGCAATTATGT+TGG + Chr1:42928733-42928752 None:intergenic 35.0%
GGTTGTGATTAACTTATGCA+TGG - Chr1:42932029-42932048 MsG0180002680.01.T01:CDS 35.0%
GTTAGAGAGAGAAATGAGTA+TGG - Chr1:42930632-42930651 MsG0180002680.01.T01:intron 35.0%
TAATCACAACCATCAGATCA+GGG + Chr1:42932020-42932039 None:intergenic 35.0%
TAATCTGCTGGAAAATGGTA+GGG - Chr1:42926424-42926443 MsG0180002680.01.T01:intron 35.0%
TAGAAGTTTCCAAAGCCAAT+TGG + Chr1:42928454-42928473 None:intergenic 35.0%
TATGGGAGAAGATTATGCAT+GGG - Chr1:42927065-42927084 MsG0180002680.01.T01:intron 35.0%
TATTCCTACTTCAGTTAACC+TGG - Chr1:42926187-42926206 MsG0180002680.01.T01:intron 35.0%
TATTGGTGTAGTAAATGCAG+AGG - Chr1:42925839-42925858 MsG0180002680.01.T01:intron 35.0%
TCATTTAGATGACGATGATG+TGG + Chr1:42928595-42928614 None:intergenic 35.0%
TCCCTCTTGAAATTGTGAAT+TGG - Chr1:42926008-42926027 MsG0180002680.01.T01:intron 35.0%
TCTTCTCCCATATTCTTTGA+AGG + Chr1:42927057-42927076 None:intergenic 35.0%
TGATTTCATGTGACTTCTCA+AGG - Chr1:42928516-42928535 MsG0180002680.01.T01:intron 35.0%
TGCAAGGTTGTATCTTTCTT+TGG - Chr1:42927830-42927849 MsG0180002680.01.T01:intron 35.0%
TGGTTGTGATGCAAAACAAT+GGG - Chr1:42931963-42931982 MsG0180002680.01.T01:CDS 35.0%
TTAACTTATGCATGGTGCAT+AGG - Chr1:42932037-42932056 MsG0180002680.01.T01:CDS 35.0%
TTAATCACAACCATCAGATC+AGG + Chr1:42932021-42932040 None:intergenic 35.0%
TTAATCTGCTGGAAAATGGT+AGG - Chr1:42926423-42926442 MsG0180002680.01.T01:intron 35.0%
TTATTCCTTCTGATCTCAGT+GGG - Chr1:42927008-42927027 MsG0180002680.01.T01:intron 35.0%
TTCTCTACCATATGTCAAGA+GGG + Chr1:42926358-42926377 None:intergenic 35.0%
TTGTTAACTGTATCCCTTGT+TGG - Chr1:42925334-42925353 MsG0180002680.01.T01:intron 35.0%
TTTCTCTACCATATGTCAAG+AGG + Chr1:42926359-42926378 None:intergenic 35.0%
! AGAATATTGGCGTTTTTGTG+AGG + Chr1:42931477-42931496 None:intergenic 35.0%
! CTTTCAACTGCCAATTTTTC+TGG - Chr1:42925637-42925656 MsG0180002680.01.T01:intron 35.0%
! GAGAGTATGTCTGAAAATTG+TGG - Chr1:42925706-42925725 MsG0180002680.01.T01:intron 35.0%
! TATGATAATGCTTCAAAGGG+AGG - Chr1:42927552-42927571 MsG0180002680.01.T01:intron 35.0%
! TGAAGTATACCAATTGGCTT+TGG - Chr1:42928442-42928461 MsG0180002680.01.T01:intron 35.0%
! TGATGAATCATCTTCCCTTT+TGG + Chr1:42926470-42926489 None:intergenic 35.0%
! TTTCGACAGCAAAATGGTTT+TGG + Chr1:42931040-42931059 None:intergenic 35.0%
!! AAACCATTTTGCTGTCGAAA+TGG - Chr1:42931040-42931059 MsG0180002680.01.T01:intron 35.0%
!! ACCATTTGAGTTGTACTTAC+GGG - Chr1:42928250-42928269 MsG0180002680.01.T01:intron 35.0%
!! ACTGTAACTCGGTGATTTTA+GGG - Chr1:42926695-42926714 MsG0180002680.01.T01:intron 35.0%
!! CAACTCATGTCACTGATTTA+TGG + Chr1:42926334-42926353 None:intergenic 35.0%
!! TAATGGTTTTGCTATGGGTA+TGG - Chr1:42930911-42930930 MsG0180002680.01.T01:intron 35.0%
!! TTGTTAAGTGTTTGCTGTGT+TGG - Chr1:42926773-42926792 MsG0180002680.01.T01:intron 35.0%
!!! CGGAGAGTTGGTATTTTATT+TGG - Chr1:42925729-42925748 MsG0180002680.01.T01:intron 35.0%
AAACCATTCCCACAGCAAAA+TGG + Chr1:42931003-42931022 None:intergenic 40.0%
AAGCAATTGATACACTCACC+GGG + Chr1:42928055-42928074 None:intergenic 40.0%
AATGACCACTTTGCTTGACA+AGG - Chr1:42927482-42927501 MsG0180002680.01.T01:intron 40.0%
AGTAACTTCGTAACTTCCAG+TGG + Chr1:42925030-42925049 None:intergenic 40.0%
AGTACCAGGTTAACTGAAGT+AGG + Chr1:42926194-42926213 None:intergenic 40.0%
ATCAAACAACGAAAGAAGGG+CGG + Chr1:42925495-42925514 None:intergenic 40.0%
ATTGAGTCTTTCGCACCAAA+AGG - Chr1:42926452-42926471 MsG0180002680.01.T01:intron 40.0%
CAAATCCTTGTCAAGCAAAG+TGG + Chr1:42927490-42927509 None:intergenic 40.0%
CCAAATTAATACACTCACCG+GGG + Chr1:42927994-42928013 None:intergenic 40.0%
CCTACAACCATTGGTAAGAA+AGG + Chr1:42928356-42928375 None:intergenic 40.0%
CCTTCATCTTCAATCTTCTC+CGG + Chr1:42931888-42931907 None:intergenic 40.0%
CCTTTCTTACCAATGGTTGT+AGG - Chr1:42928353-42928372 MsG0180002680.01.T01:intron 40.0%
GAAAAATCTTGTAGGCAGGT+AGG - Chr1:42925915-42925934 MsG0180002680.01.T01:intron 40.0%
GAGAAAGGAATGCAGTAAGA+TGG + Chr1:42928310-42928329 None:intergenic 40.0%
GAGAAGATTATGCATGGGAA+GGG - Chr1:42927070-42927089 MsG0180002680.01.T01:intron 40.0%
GAGCATCAAACAACGAAAGA+AGG + Chr1:42925499-42925518 None:intergenic 40.0%
GAGTTGAAAATGAGTGAGTC+AGG + Chr1:42931532-42931551 None:intergenic 40.0%
GCACATTTGTTCACTAACTG+TGG + Chr1:42926158-42926177 None:intergenic 40.0%
GCAGAGGAATCATCAGAAAA+TGG - Chr1:42925855-42925874 MsG0180002680.01.T01:intron 40.0%
GCTTCAGAGAACAGGAAATT+GGG - Chr1:42925151-42925170 MsG0180002680.01.T01:CDS 40.0%
GTCTTGCTCTCATGTAGAAA+GGG + Chr1:42925882-42925901 None:intergenic 40.0%
GTGAAGAAGACATGGTTGAA+GGG + Chr1:42931571-42931590 None:intergenic 40.0%
GTGGTTGTGATGCAAAACAA+TGG - Chr1:42931962-42931981 MsG0180002680.01.T01:CDS 40.0%
GTGTTCTTGAAGTTCTGTGT+TGG + Chr1:42931216-42931235 None:intergenic 40.0%
GTTATTCCTTCTGATCTCAG+TGG - Chr1:42927007-42927026 MsG0180002680.01.T01:intron 40.0%
GTTCCTATAGGACTGTAACT+CGG - Chr1:42926684-42926703 MsG0180002680.01.T01:intron 40.0%
TATGCATGGTGCATAGGTTA+TGG - Chr1:42932043-42932062 MsG0180002680.01.T01:CDS 40.0%
TCAAGCAAAGTGGTCATTTC+TGG + Chr1:42927480-42927499 None:intergenic 40.0%
TCCCGTAAGTACAACTCAAA+TGG + Chr1:42928254-42928273 None:intergenic 40.0%
TGAAAATGAGTGAGTCAGGT+GGG + Chr1:42931528-42931547 None:intergenic 40.0%
TGACAAGAACCTACAACCAT+TGG + Chr1:42928365-42928384 None:intergenic 40.0%
TGACAGAGAATGTTACAAGC+TGG + Chr1:42927110-42927129 None:intergenic 40.0%
TGATTCATCATTTGGCACGT+AGG - Chr1:42926480-42926499 MsG0180002680.01.T01:intron 40.0%
TGGTTCTCTAATGCCGTAAA+GGG - Chr1:42925793-42925812 MsG0180002680.01.T01:intron 40.0%
TGTGGTTGCAGTTAGCAAAT+AGG - Chr1:42926606-42926625 MsG0180002680.01.T01:intron 40.0%
TTGAAAATGAGTGAGTCAGG+TGG + Chr1:42931529-42931548 None:intergenic 40.0%
TTGAAGTTCTGTGTTGGATC+TGG + Chr1:42931210-42931229 None:intergenic 40.0%
TTGAGTCTTTCGCACCAAAA+GGG - Chr1:42926453-42926472 MsG0180002680.01.T01:intron 40.0%
TTTGTGAGGATTATTGGCAG+TGG + Chr1:42931463-42931482 None:intergenic 40.0%
! ACTCCAAAACCATTTTGCTG+TGG - Chr1:42930991-42931010 MsG0180002680.01.T01:CDS 40.0%
! CAATGATTTTGCGTTTGCGA+TGG + Chr1:42931176-42931195 None:intergenic 40.0%
! GCATTCGAGTTTGAAGGAAT+CGG + Chr1:42931672-42931691 None:intergenic 40.0%
! GGCGTTTTTGTGAGGATTAT+TGG + Chr1:42931469-42931488 None:intergenic 40.0%
! TCTTCTAAGCGTTTTGCTTC+TGG + Chr1:42931593-42931612 None:intergenic 40.0%
! TTCCCACAGCAAAATGGTTT+TGG + Chr1:42930997-42931016 None:intergenic 40.0%
!! AAACCATTTTGCTGTGGGAA+TGG - Chr1:42930997-42931016 MsG0180002680.01.T01:CDS 40.0%
!! CTCCAAAACCATTTTGCTGT+GGG - Chr1:42930992-42931011 MsG0180002680.01.T01:CDS 40.0%
!! GACTGTAACTCGGTGATTTT+AGG - Chr1:42926694-42926713 MsG0180002680.01.T01:intron 40.0%
!! TCACCTGAAGTCTTGTTGAT+GGG + Chr1:42927665-42927684 None:intergenic 40.0%
AAGACTTCAGGTGAGTAACG+TGG - Chr1:42927671-42927690 MsG0180002680.01.T01:intron 45.0%
ACAACCTTGCAAAAGGGTAG+AGG + Chr1:42927821-42927840 None:intergenic 45.0%
ACACCCATCAACAAGACTTC+AGG - Chr1:42927659-42927678 MsG0180002680.01.T01:intron 45.0%
ACTGCATGGAAAATCGCTGT+GGG + Chr1:42927583-42927602 None:intergenic 45.0%
ACTGGATCACTGCATTTGGT+TGG - Chr1:42928384-42928403 MsG0180002680.01.T01:intron 45.0%
AGAAGACATGGTTGAAGGGA+AGG + Chr1:42931567-42931586 None:intergenic 45.0%
AGCAAATAGGCTGAATGCGT+GGG - Chr1:42926619-42926638 MsG0180002680.01.T01:intron 45.0%
AGCAATTGATACACTCACCG+GGG + Chr1:42928054-42928073 None:intergenic 45.0%
AGGTCTTGACAGTCTACACT+TGG - Chr1:42926507-42926526 MsG0180002680.01.T01:intron 45.0%
ATCTTAACGACGTCACTGTG+AGG + Chr1:42927135-42927154 None:intergenic 45.0%
ATCTTCAATCTTCTCCGGCA+CGG + Chr1:42931883-42931902 None:intergenic 45.0%
ATTATTGGCAGTGGCATGCA+TGG + Chr1:42931454-42931473 None:intergenic 45.0%
ATTCGTTCGGCGATGAGAAT+TGG + Chr1:42931629-42931648 None:intergenic 45.0%
CAGTCTCAATCTCTAGATGC+TGG - Chr1:42925129-42925148 MsG0180002680.01.T01:CDS 45.0%
CCCCGGTGAGTGTATTAATT+TGG - Chr1:42927991-42928010 MsG0180002680.01.T01:intron 45.0%
CCGGAGAAGATTGAAGATGA+AGG - Chr1:42931885-42931904 MsG0180002680.01.T01:intron 45.0%
CGTCAGAAGGCAATTGATAC+TGG + Chr1:42926066-42926085 None:intergenic 45.0%
CTGAGACCTCCCAGAAAAAT+TGG + Chr1:42925650-42925669 None:intergenic 45.0%
CTGTACAGTGTGAGAGAAGA+GGG - Chr1:42931938-42931957 MsG0180002680.01.T01:intron 45.0%
GAAGACATGGTTGAAGGGAA+GGG + Chr1:42931566-42931585 None:intergenic 45.0%
GAGTTGACCCTCTTGACATA+TGG - Chr1:42926348-42926367 MsG0180002680.01.T01:intron 45.0%
GGAGAAGATTATGCATGGGA+AGG - Chr1:42927069-42927088 MsG0180002680.01.T01:intron 45.0%
GGCTTCAGAGAACAGGAAAT+TGG - Chr1:42925150-42925169 MsG0180002680.01.T01:CDS 45.0%
GGTCTTGCTCTCATGTAGAA+AGG + Chr1:42925883-42925902 None:intergenic 45.0%
GGTGAAGAAGACATGGTTGA+AGG + Chr1:42931572-42931591 None:intergenic 45.0%
GTGAACAAATGTGCTTCGTC+AGG - Chr1:42926164-42926183 MsG0180002680.01.T01:intron 45.0%
GTGGTTCTCTAATGCCGTAA+AGG - Chr1:42925792-42925811 MsG0180002680.01.T01:intron 45.0%
GTGTAGACTGTCAAGACCTT+AGG + Chr1:42926506-42926525 None:intergenic 45.0%
GTTCAGTATAGGATAGTCCG+CGG - Chr1:42928642-42928661 MsG0180002680.01.T01:intron 45.0%
TAAGGGCAAGAAACCTTTGC+CGG - Chr1:42931130-42931149 MsG0180002680.01.T01:intron 45.0%
TAGCAAATAGGCTGAATGCG+TGG - Chr1:42926618-42926637 MsG0180002680.01.T01:intron 45.0%
TCAAACAACGAAAGAAGGGC+GGG + Chr1:42925494-42925513 None:intergenic 45.0%
TCACCGAGTTACAGTCCTAT+AGG + Chr1:42926690-42926709 None:intergenic 45.0%
TCAGTGGGATAGACCTATCA+TGG - Chr1:42927023-42927042 MsG0180002680.01.T01:intron 45.0%
TCTACATGAGAGCAAGACCT+TGG - Chr1:42925884-42925903 MsG0180002680.01.T01:intron 45.0%
TCTATCCCACTGAGATCAGA+AGG + Chr1:42927016-42927035 None:intergenic 45.0%
TCTGTACAGTGTGAGAGAAG+AGG - Chr1:42931937-42931956 MsG0180002680.01.T01:intron 45.0%
TGAGAGCCCTTTCTTACCAA+TGG - Chr1:42928346-42928365 MsG0180002680.01.T01:intron 45.0%
TGCCAGGCATCAACATTGAT+GGG - Chr1:42928094-42928113 MsG0180002680.01.T01:intron 45.0%
TGCTTCTGGTGAAGAAGACA+TGG + Chr1:42931579-42931598 None:intergenic 45.0%
TGGTTGTAGGTTCTTGTCAC+TGG - Chr1:42928366-42928385 MsG0180002680.01.T01:intron 45.0%
TGTCACTGGATCACTGCATT+TGG - Chr1:42928380-42928399 MsG0180002680.01.T01:intron 45.0%
TTCGACGTGTTTCCAGACTT+CGG + Chr1:42931696-42931715 None:intergenic 45.0%
TTCGGCGATGAGAATTGGAT+AGG + Chr1:42931624-42931643 None:intergenic 45.0%
TTGACGCAGTTAACGGTGAA+TGG + Chr1:42927969-42927988 None:intergenic 45.0%
TTGCAAAAGGGTAGAGGAAC+AGG + Chr1:42927815-42927834 None:intergenic 45.0%
TTGCCAGGCATCAACATTGA+TGG - Chr1:42928093-42928112 MsG0180002680.01.T01:intron 45.0%
! ACCATAACTTTTGCCGTCTG+CGG - Chr1:42932073-42932092 MsG0180002680.01.T01:CDS 45.0%
! CAACTGCCAATTTTTCTGGG+AGG - Chr1:42925641-42925660 MsG0180002680.01.T01:intron 45.0%
! GAAGGAATCGGTTTCTTCTG+TGG + Chr1:42931660-42931679 None:intergenic 45.0%
! TGAAAATTGTGGCGGAGAGT+TGG - Chr1:42925717-42925736 MsG0180002680.01.T01:intron 45.0%
! TGTTCCTCTACCCTTTTGCA+AGG - Chr1:42927814-42927833 MsG0180002680.01.T01:intron 45.0%
! TTCGGAGCATTCGAGTTTGA+AGG + Chr1:42931678-42931697 None:intergenic 45.0%
!! AGTGTTTGCTGTGTTGGTTC+TGG - Chr1:42926779-42926798 MsG0180002680.01.T01:intron 45.0%
!! CTCACCTGAAGTCTTGTTGA+TGG + Chr1:42927666-42927685 None:intergenic 45.0%
!! GAAGGTATTACTGCACTGCA+TGG + Chr1:42927597-42927616 None:intergenic 45.0%
!! GGAGTGATTTTGGTGAACTC+CGG - Chr1:42931825-42931844 MsG0180002680.01.T01:intron 45.0%
!! GGCGGGTGGATTATTCTTTA+AGG + Chr1:42925477-42925496 None:intergenic 45.0%
!! TGAATGCGTGGGGTATCTTT+TGG - Chr1:42926630-42926649 MsG0180002680.01.T01:intron 45.0%
!! TTCGAGTTGGGAATCGGAAT+TGG + Chr1:42931504-42931523 None:intergenic 45.0%
!!! TGGTTTTGGAGTCCAACTCA+CGG + Chr1:42931026-42931045 None:intergenic 45.0%
!! TTCATTAAAATAAAAATAAT+TGG - Chr1:42925263-42925282 MsG0180002680.01.T01:intron 5.0%
!!! TTGTTTTTTTAAAATAAAAT+CGG + Chr1:42929127-42929146 None:intergenic 5.0%
AACTCGAATGCTCCGAAGTC+TGG - Chr1:42931681-42931700 MsG0180002680.01.T01:intron 50.0%
ACCCCATCAATGTTGATGCC+TGG + Chr1:42928099-42928118 None:intergenic 50.0%
AGCTCATAGTCCAGAGAGCA+TGG - Chr1:42925756-42925775 MsG0180002680.01.T01:intron 50.0%
CACTGCATGGAAAATCGCTG+TGG + Chr1:42927584-42927603 None:intergenic 50.0%
CATGGAAAATCGCTGTGGGA+AGG + Chr1:42927579-42927598 None:intergenic 50.0%
CGTTAACTGCGTCAAAACCC+CGG - Chr1:42927974-42927993 MsG0180002680.01.T01:intron 50.0%
CTTCAGGTGAGTAACGTGGA+CGG - Chr1:42927675-42927694 MsG0180002680.01.T01:intron 50.0%
GCAAATAGGCTGAATGCGTG+GGG - Chr1:42926620-42926639 MsG0180002680.01.T01:intron 50.0%
GCCAGGCATCAACATTGATG+GGG - Chr1:42928095-42928114 MsG0180002680.01.T01:intron 50.0%
GGATAGGCAGCAGTTCCTAT+AGG - Chr1:42926672-42926691 MsG0180002680.01.T01:intron 50.0%
GGGTGTGGTTATGGTGCATA+AGG - Chr1:42928666-42928685 MsG0180002680.01.T01:intron 50.0%
TACACGTGTCCCTGATCTGA+TGG - Chr1:42932008-42932027 MsG0180002680.01.T01:CDS 50.0%
TATGCACGGTGCAGTGCATA+AGG + Chr1:42928696-42928715 None:intergenic 50.0%
TATTTGATATGCTGGGGCGC+AGG + Chr1:42928218-42928237 None:intergenic 50.0%
TCATTTGGCACGTAGGCCTA+AGG - Chr1:42926487-42926506 MsG0180002680.01.T01:intron 50.0%
TGGCAATACGACTCAGGAGA+AGG + Chr1:42928079-42928098 None:intergenic 50.0%
TGGGAATGGTTTCCGTGAGT+TGG - Chr1:42931011-42931030 MsG0180002680.01.T01:CDS 50.0%
TTCAGGTGAGTAACGTGGAC+GGG - Chr1:42927676-42927695 MsG0180002680.01.T01:intron 50.0%
TTCGTCTCCTCTGTCTTCTC+CGG + Chr1:42931152-42931171 None:intergenic 50.0%
TTCTCCTGAGTCGTATTGCC+AGG - Chr1:42928078-42928097 MsG0180002680.01.T01:intron 50.0%
! AGTCAGGTGGGATTCGAGTT+GGG + Chr1:42931516-42931535 None:intergenic 50.0%
! ATAACTTTTGCCGTCTGCGG+CGG - Chr1:42932076-42932095 MsG0180002680.01.T01:CDS 50.0%
! GGAATCGGTTTCTTCTGTGG+CGG + Chr1:42931657-42931676 None:intergenic 50.0%
! TCATAGTCCAGAGAGCATGG+AGG - Chr1:42925759-42925778 MsG0180002680.01.T01:intron 50.0%
! TGTGGCGGAACGAATTCGTT+CGG + Chr1:42931642-42931661 None:intergenic 50.0%
!! AGATGCTGGCTTCAGAGAAC+AGG - Chr1:42925143-42925162 MsG0180002680.01.T01:CDS 50.0%
!! CGGGGTTTTGACGCAGTTAA+CGG + Chr1:42927976-42927995 None:intergenic 50.0%
!! GTGATTTTGGTGAACTCCGG+CGG - Chr1:42931828-42931847 MsG0180002680.01.T01:intron 50.0%
!! GTGGGATTCGAGTTGGGAAT+CGG + Chr1:42931510-42931529 None:intergenic 50.0%
AACAACGAAAGAAGGGCGGG+TGG + Chr1:42925491-42925510 None:intergenic 55.0%
ACCTTTGCCGGAGAAGACAG+AGG - Chr1:42931142-42931161 MsG0180002680.01.T01:intron 55.0%
AGTATAGGATAGTCCGCGGC+GGG - Chr1:42928646-42928665 MsG0180002680.01.T01:intron 55.0%
CAGTATAGGATAGTCCGCGG+CGG - Chr1:42928645-42928664 MsG0180002680.01.T01:intron 55.0%
CAGTGTGAGAGAAGAGGGAG+TGG - Chr1:42931943-42931962 MsG0180002680.01.T01:intron 55.0%
GAGTCAGGTGGGATTCGAGT+TGG + Chr1:42931517-42931536 None:intergenic 55.0%
GATGCCTGGCAATACGACTC+AGG + Chr1:42928085-42928104 None:intergenic 55.0%
GCCGCAGACGGCAAAAGTTA+TGG + Chr1:42932077-42932096 None:intergenic 55.0%
TACTGTAGTACCGCCGCAGA+CGG + Chr1:42932089-42932108 None:intergenic 55.0%
TCCTCTGTCTTCTCCGGCAA+AGG + Chr1:42931146-42931165 None:intergenic 55.0%
TTCAATCTTCTCCGGCACGG+TGG + Chr1:42931880-42931899 None:intergenic 55.0%
! GCATGGAGGCATGTGCAAAG+TGG - Chr1:42925773-42925792 MsG0180002680.01.T01:intron 55.0%
!! ATTTTGGTGAACTCCGGCGG+CGG - Chr1:42931831-42931850 MsG0180002680.01.T01:intron 55.0%
GCACATGCCTCCATGCTCTC+TGG + Chr1:42925769-42925788 None:intergenic 60.0%
GTCTGCGGCGGTACTACAGT+AGG - Chr1:42932088-42932107 MsG0180002680.01.T01:CDS 60.0%
ATCTTCTCCGGCACGGTGGC+CGG + Chr1:42931876-42931895 None:intergenic 65.0%
CACCATAACCACACCCGCCG+CGG + Chr1:42928662-42928681 None:intergenic 65.0%
AGGATAGTCCGCGGCGGGTG+TGG - Chr1:42928651-42928670 MsG0180002680.01.T01:intron 70.0%
GTCCGCGGCGGGTGTGGTTA+TGG - Chr1:42928657-42928676 MsG0180002680.01.T01:intron 70.0%
CACGGTGGCCGGCCACCCTA+GGG + Chr1:42931865-42931884 None:intergenic 75.0%
! AGGGTGGCCGGCCACCGTGC+CGG - Chr1:42931866-42931885 MsG0180002680.01.T01:intron 80.0%
! CGCCGCCACCCTAGGGTGGC+CGG - Chr1:42931854-42931873 MsG0180002680.01.T01:intron 80.0%
! GCACGGTGGCCGGCCACCCT+AGG + Chr1:42931866-42931885 None:intergenic 80.0%
! GGCCGGCCACCCTAGGGTGG+CGG + Chr1:42931859-42931878 None:intergenic 80.0%
! GGTGGCCGGCCACCCTAGGG+TGG + Chr1:42931862-42931881 None:intergenic 80.0%
! GCGGCGCCGCCACCCTAGGG+TGG - Chr1:42931850-42931869 MsG0180002680.01.T01:intron 85.0%
! GCGGCGGCGCCGCCACCCTA+GGG - Chr1:42931847-42931866 MsG0180002680.01.T01:intron 85.0%
!! TAGGGTGGCGGCGCCGCCGC+CGG + Chr1:42931847-42931866 None:intergenic 85.0%
! GGCGGCGGCGCCGCCACCCT+AGG - Chr1:42931846-42931865 MsG0180002680.01.T01:intron 90.0%
Chromosome Type Strat End Strand Name
Chr1 gene 42925014 42932125 42925014 ID=MsG0180002680.01;Name=MsG0180002680.01
Chr1 mRNA 42925014 42932125 42925014 ID=MsG0180002680.01.T01;Parent=MsG0180002680.01;Name=MsG0180002680.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.83|1|1|6|0|330
Chr1 exon 42931961 42932125 42931961 ID=MsG0180002680.01.T01:exon:22150;Parent=MsG0180002680.01.T01
Chr1 exon 42931332 42931544 42931332 ID=MsG0180002680.01.T01:exon:22149;Parent=MsG0180002680.01.T01
Chr1 exon 42930954 42931032 42930954 ID=MsG0180002680.01.T01:exon:22148;Parent=MsG0180002680.01.T01
Chr1 exon 42930048 42930203 42930048 ID=MsG0180002680.01.T01:exon:22147;Parent=MsG0180002680.01.T01
Chr1 exon 42929459 42929658 42929459 ID=MsG0180002680.01.T01:exon:22146;Parent=MsG0180002680.01.T01
Chr1 exon 42925014 42925193 42925014 ID=MsG0180002680.01.T01:exon:22145;Parent=MsG0180002680.01.T01
Chr1 CDS 42931961 42932125 42931961 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Chr1 CDS 42931332 42931544 42931332 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Chr1 CDS 42930954 42931032 42930954 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Chr1 CDS 42930048 42930203 42930048 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Chr1 CDS 42929459 42929658 42929459 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Chr1 CDS 42925014 42925193 42925014 ID=MsG0180002680.01.T01:cds;Parent=MsG0180002680.01.T01
Gene Sequence

>MsG0180002680.01.T01

ATGGCTGCAGGTTCCACTGGAAGTTACGAAGTTACTGAGCCTTTAGATTGTAAACAAATGAAGGGATTAAAGTTCTGTTTATCTGGTGATCACCAACTATATAATGCTGCTCTTGCAGTCTCAATCTCTAGATGCTGGCTTCAGAGAACAGGAAATTGGGAAAAAGATTTTCAGGATTCTAATTTGCCAGATGAATTTATTAGAGGTCTTTCAACTGCCAATTTTTCTGGGAGGTCTCAGATTGTTTGTGACTCTTCTCTATATTCTGACTGCTCAGAGAGTATGTCTGAAAATTGTGGCGGAGAGTTGGTATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATGGAGGCATGTGCAAAGTGGTTCTCTAATGCCATTCTTTTATTCAATTGCTTAGATGTGAGAAATCCCAAAATTTTGCTTCCACAGTTAGTGAACAAATGTGCTTCGTCAGGTATTCATTTCTCAAGAGCACTTTTTGTTTCGAGTATGTCAAAGTACACTAAGGTTACTTCTGGTGCATCAGTTATTCCTTCTGATCTCAGTGGGATAGACCTATCATGGCAATTTAACCTTCAAAGAATATGGGAGAAGATTATGCATGGGAAGGAAATGACCACTTTGCTTGACAAGGATTTGAAGATAGAGAGCAAGCTGATGTTACCACCTCATGAATTTTTATATGATAATGCTTCAAAGGGAGGTCCTTCCCACAGCGATTTTCCATGCAGTGCAGTAATACCTTCATTGCCATTGACAATAAAATGGTTGAGGGACTGCGTCAAAGAACACCCATCAACAAGACTTCAGTGTGAGAGAAGAGGGAGTGGTTGTGATGCAAAACAATGGGAAAGAGCTGAAGCACAAGATTATACACGTGTCCCTGATCTGATGGTTGTGATTAACTTATGCATGGTGCATAGGTTATGGCGTATGCACCATAACTTTTGCCGTCTGCGGCGGTACTACAGTAGGAGAACCATGCAATAA
Protein sequence

>MsG0180002680.01.T01

MAAGSTGSYEVTEPLDCKQMKGLKFCLSGDHQLYNAALAVSISRCWLQRTGNWEKDFQDSNLPDEFIRGLSTANFSGRSQIVCDSSLYSDCSESMSENCGGELVFYLDGAHSPESMEACAKWFSNAILLFNCLDVRNPKILLPQLVNKCASSGIHFSRALFVSSMSKYTKVTSGASVIPSDLSGIDLSWQFNLQRIWEKIMHGKEMTTLLDKDLKIESKLMLPPHEFLYDNASKGGPSHSDFPCSAVIPSLPLTIKWLRDCVKEHPSTRLQCERRGSGCDAKQWERAEAQDYTRVPDLMVVINLCMVHRLWRMHHNFCRLRRYYSRRTMQ*