Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012099.01.T01 | KEH31687.1 | 62.917 | 480 | 133 | 3 | 1 | 436 | 14 | 492 | 0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012099.01.T01 | A0A072UPR6 | 62.917 | 480 | 133 | 3 | 1 | 436 | 14 | 492 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049066.01 | MsG0380012099.01 | -0.811495 | 6.804716e-51 | 4.218677e-48 |
| MsG0180003757.01 | MsG0380012099.01 | -0.816711 | 4.802332e-52 | 3.428380e-49 |
| MsG0180005328.01 | MsG0380012099.01 | 0.808464 | 3.057987e-50 | 1.749717e-47 |
| MsG0280011301.01 | MsG0380012099.01 | -0.802562 | 5.289699e-49 | 2.599272e-46 |
| MsG0380011638.01 | MsG0380012099.01 | 0.806083 | 9.771503e-50 | 5.255933e-47 |
| MsG0380012099.01 | MsG0380013100.01 | 0.800357 | 1.497244e-48 | 6.957347e-46 |
| MsG0380012099.01 | MsG0380013114.01 | -0.804093 | 2.549177e-49 | 1.302776e-46 |
| MsG0380012099.01 | MsG0380013272.01 | 0.821664 | 3.580209e-53 | 2.931249e-50 |
| MsG0380012099.01 | MsG0380013278.01 | 0.815974 | 7.020630e-52 | 4.911988e-49 |
| MsG0380012099.01 | MsG0380016270.01 | 0.806805 | 6.881724e-50 | 3.770586e-47 |
| MsG0380012099.01 | MsG0380016935.01 | -0.801390 | 9.209521e-49 | 4.392787e-46 |
| MsG0380012099.01 | MsG0380017405.01 | -0.804310 | 2.296912e-49 | 1.180396e-46 |
| MsG0380012099.01 | MsG0480018440.01 | 0.804198 | 2.424201e-49 | 1.242197e-46 |
| MsG0380012099.01 | MsG0480018628.01 | -0.801781 | 7.658570e-49 | 3.689211e-46 |
| MsG0380012099.01 | MsG0480020958.01 | 0.810743 | 9.904841e-51 | 6.019453e-48 |
| MsG0380012099.01 | MsG0480021005.01 | 0.821620 | 3.665963e-53 | 2.997582e-50 |
| MsG0380012099.01 | MsG0480022125.01 | 0.806478 | 8.066112e-50 | 4.382589e-47 |
| MsG0380012099.01 | MsG0480023107.01 | 0.804823 | 1.795614e-49 | 9.351186e-47 |
| MsG0380012099.01 | MsG0580027797.01 | 0.801316 | 9.538121e-49 | 4.541093e-46 |
| MsG0380012099.01 | MsG0580028999.01 | 0.802519 | 5.399380e-49 | 2.650225e-46 |
| MsG0380012099.01 | MsG0580029583.01 | 0.818314 | 2.090841e-52 | 1.559721e-49 |
| MsG0380012099.01 | MsG0680030635.01 | -0.800498 | 1.401380e-48 | 6.535048e-46 |
| MsG0380012099.01 | MsG0680030960.01 | 0.809015 | 2.331636e-50 | 1.353550e-47 |
| MsG0380012099.01 | MsG0680030961.01 | 0.813270 | 2.787257e-51 | 1.811791e-48 |
| MsG0380012099.01 | MsG0680031813.01 | -0.809002 | 2.346291e-50 | 1.361577e-47 |
| MsG0380012099.01 | MsG0680034229.01 | -0.800868 | 1.177616e-48 | 5.543588e-46 |
| MsG0380012099.01 | MsG0680035841.01 | 0.813952 | 1.972365e-51 | 1.306091e-48 |
| MsG0380012099.01 | MsG0680035842.01 | 0.800766 | 1.235786e-48 | 5.802014e-46 |
| MsG0380012099.01 | MsG0780039190.01 | 0.807537 | 4.814922e-50 | 2.688743e-47 |
| MsG0380012099.01 | MsG0780039839.01 | -0.814836 | 1.257907e-51 | 8.531321e-49 |
| MsG0380012099.01 | MsG0780041254.01 | -0.802912 | 4.479596e-49 | 2.221022e-46 |
| MsG0380012099.01 | MsG0780041316.01 | 0.805779 | 1.132110e-49 | 6.042391e-47 |
| MsG0380012099.01 | MsG0780041556.01 | 0.806210 | 9.187438e-50 | 4.958045e-47 |
| MsG0380012099.01 | MsG0780041720.01 | -0.815704 | 8.065717e-52 | 5.601745e-49 |
| MsG0380012099.01 | MsG0780041783.01 | -0.812700 | 3.716059e-51 | 2.379110e-48 |
| MsG0380012099.01 | MsG0880042810.01 | 0.818902 | 1.537727e-52 | 1.165992e-49 |
| MsG0380012099.01 | MsG0880042858.01 | -0.800594 | 1.339597e-48 | 6.262131e-46 |
| MsG0380012099.01 | MsG0880043185.01 | 0.808388 | 3.173419e-50 | 1.812203e-47 |
| MsG0380012099.01 | MsG0880043364.01 | 0.813675 | 2.269718e-51 | 1.491818e-48 |
| MsG0380012099.01 | MsG0880043828.01 | 0.812617 | 3.873342e-51 | 2.474442e-48 |
| MsG0380012099.01 | MsG0880045677.01 | 0.817357 | 3.438599e-52 | 2.498610e-49 |
| MsG0380012099.01 | MsG0880046341.01 | -0.803635 | 3.172558e-49 | 1.602381e-46 |
| MsG0380012099.01 | MsG0880046996.01 | 0.812148 | 4.903996e-51 | 3.093848e-48 |
| MsG0280006883.01 | MsG0380012099.01 | 0.812942 | 3.288446e-51 | 2.118728e-48 |
| MsG0280007759.01 | MsG0380012099.01 | 0.818912 | 1.530404e-52 | 1.160760e-49 |
| MsG0280008405.01 | MsG0380012099.01 | 0.816183 | 6.304635e-52 | 4.436424e-49 |
| MsG0280009167.01 | MsG0380012099.01 | 0.807067 | 6.058497e-50 | 3.342010e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012099.01.T01 | MTR_4g102460 | 62.917 | 480 | 133 | 3 | 1 | 436 | 14 | 492 | 0.0 | 565 |
| MsG0380012099.01.T01 | MTR_7g105270 | 57.862 | 477 | 124 | 5 | 4 | 436 | 1 | 444 | 2.82e-169 | 485 |
| MsG0380012099.01.T01 | MTR_7g056297 | 45.745 | 470 | 154 | 5 | 4 | 436 | 1 | 406 | 2.71e-108 | 328 |
| MsG0380012099.01.T01 | MTR_1361s0010 | 45.038 | 262 | 79 | 5 | 79 | 332 | 1 | 205 | 2.01e-60 | 198 |
| MsG0380012099.01.T01 | MTR_7g060230 | 60.355 | 169 | 62 | 3 | 256 | 421 | 11 | 177 | 7.74e-58 | 189 |
| MsG0380012099.01.T01 | MTR_8g054490 | 95.604 | 91 | 4 | 0 | 1 | 91 | 15 | 105 | 4.07e-42 | 149 |
| MsG0380012099.01.T01 | MTR_0050s0090 | 47.568 | 185 | 74 | 4 | 288 | 451 | 1 | 183 | 2.59e-40 | 144 |
| MsG0380012099.01.T01 | MTR_8g015130 | 66.667 | 99 | 33 | 0 | 338 | 436 | 32 | 130 | 5.85e-38 | 136 |
| MsG0380012099.01.T01 | MTR_7g034745 | 95.000 | 80 | 4 | 0 | 1 | 80 | 15 | 94 | 2.73e-37 | 132 |
| MsG0380012099.01.T01 | MTR_1g105095 | 61.682 | 107 | 41 | 0 | 13 | 119 | 76 | 182 | 7.91e-35 | 128 |
| MsG0380012099.01.T01 | MTR_4g085060 | 59.434 | 106 | 35 | 2 | 204 | 301 | 30 | 135 | 1.16e-24 | 99.4 |
| MsG0380012099.01.T01 | MTR_0045s0120 | 67.416 | 89 | 29 | 0 | 4 | 92 | 1 | 89 | 1.61e-21 | 89.7 |
| MsG0380012099.01.T01 | MTR_7g060240 | 60.227 | 88 | 34 | 1 | 1 | 88 | 16 | 102 | 8.76e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGAATGTATTATGTT+GGG | 0.222418 | 3:+10898901 | None:intergenic |
| CCTTGACACATGAAACATTT+AGG | 0.235719 | 3:+10898863 | None:intergenic |
| AAAGTAATCACCATCGTTAA+TGG | 0.264053 | 3:-10898806 | MsG0380012099.01.T01:CDS |
| TAAAGAAGCATGCTTCAATT+TGG | 0.276664 | 3:-10899153 | MsG0380012099.01.T01:CDS |
| TTTGGTGGGAAAATCTTAAA+AGG | 0.284790 | 3:-10899135 | MsG0380012099.01.T01:CDS |
| TTTACGATTGACACAATCTA+AGG | 0.305579 | 3:+10898826 | None:intergenic |
| GCCTAGCAATAGTTCTTCTT+TGG | 0.315714 | 3:+10898517 | None:intergenic |
| TGTTGAATATGATGAATCTT+TGG | 0.324852 | 3:-10898570 | MsG0380012099.01.T01:CDS |
| ACTTCACATAAGTCGTATAT+TGG | 0.330817 | 3:+10898710 | None:intergenic |
| TCTCTGAATGATTGTCTTTG+TGG | 0.337173 | 3:+10899319 | None:intergenic |
| CAAAGACTCGTTCAACAGTT+TGG | 0.337423 | 3:+10899227 | None:intergenic |
| ATGTGAAGTGTTTGAAGAAA+AGG | 0.338185 | 3:-10898696 | MsG0380012099.01.T01:CDS |
| GATACTTGCCACATTAATCT+TGG | 0.340515 | 3:-10898398 | MsG0380012099.01.T01:CDS |
| GGACCATATTCATCATATAT+TGG | 0.346543 | 3:+10898662 | None:intergenic |
| TCTCTATGAATGTATTATGT+TGG | 0.347566 | 3:+10898900 | None:intergenic |
| TGTAGCTTTCCTTCAAAATC+AGG | 0.348866 | 3:+10899274 | None:intergenic |
| TGGGGTTTGAATGAGGAAAT+AGG | 0.352490 | 3:+10898920 | None:intergenic |
| GATCCAATATATGATGAATA+TGG | 0.372874 | 3:-10898665 | MsG0380012099.01.T01:CDS |
| TGTGAAGTGTTTGAAGAAAA+GGG | 0.395266 | 3:-10898695 | MsG0380012099.01.T01:CDS |
| TCCCAAGGTGGCTTAGGAAC+CGG | 0.397331 | 3:+10898176 | None:intergenic |
| CAAGATGTTTGAAGAAGAAA+AGG | 0.399126 | 3:-10898774 | MsG0380012099.01.T01:CDS |
| AAATGCACAACAAGCACAAT+TGG | 0.413256 | 3:-10899410 | MsG0380012099.01.T01:CDS |
| ATGAGAAGGTAAATACTTGC+GGG | 0.418269 | 3:+10899051 | None:intergenic |
| TGAATGAGGAAATAGGTTGA+TGG | 0.421056 | 3:+10898927 | None:intergenic |
| TTACAGTTTCTTGTAACTGT+TGG | 0.421464 | 3:+10899431 | None:intergenic |
| AAGTTTCTTCTTCATCCTTA+CGG | 0.421681 | 3:+10898136 | None:intergenic |
| TCCGGTTCCTAAGCCACCTT+GGG | 0.424095 | 3:-10898177 | MsG0380012099.01.T01:CDS |
| ATCCAGATGAGTTCGTTGAT+TGG | 0.442139 | 3:-10899252 | MsG0380012099.01.T01:CDS |
| AAAGATTCATCATATTCAAC+AGG | 0.443232 | 3:+10898572 | None:intergenic |
| AGCCAATCAACGAACTCATC+TGG | 0.446536 | 3:+10899250 | None:intergenic |
| AAAGTCATGTCTACTTTGTC+CGG | 0.451318 | 3:-10898195 | MsG0380012099.01.T01:CDS |
| TAGAAGCCATGTCTGTGAAA+TGG | 0.453061 | 3:+10898477 | None:intergenic |
| TAGCAATAGTTCTTCTTTGG+CGG | 0.465345 | 3:+10898520 | None:intergenic |
| ACTCACAAAGGAACCATTCA+AGG | 0.465435 | 3:-10898225 | MsG0380012099.01.T01:CDS |
| TGTTTCATGTGTCAAGGGTA+TGG | 0.473039 | 3:-10898857 | MsG0380012099.01.T01:CDS |
| GAAGCCCAACACATGCAATC+AGG | 0.474794 | 3:-10899388 | MsG0380012099.01.T01:CDS |
| GTCCGGTTCCTAAGCCACCT+TGG | 0.476456 | 3:-10898178 | MsG0380012099.01.T01:CDS |
| TCTATGAATGTATTATGTTG+GGG | 0.479213 | 3:+10898902 | None:intergenic |
| GAAATAGGTTGATGGGTTTG+TGG | 0.482607 | 3:+10898935 | None:intergenic |
| ATACTTGCCACATTAATCTT+GGG | 0.487744 | 3:-10898397 | MsG0380012099.01.T01:CDS |
| GAATGAGGAAATAGGTTGAT+GGG | 0.489238 | 3:+10898928 | None:intergenic |
| AGAAGCATGCTTCAATTTGG+TGG | 0.489703 | 3:-10899150 | MsG0380012099.01.T01:CDS |
| AATCAAGTTGGCACCTCTAC+CGG | 0.492746 | 3:-10898297 | MsG0380012099.01.T01:CDS |
| ACAATTATAAAGAAAATGTA+TGG | 0.493013 | 3:-10898439 | MsG0380012099.01.T01:CDS |
| AACGCCTGATTGCATGTGTT+GGG | 0.493187 | 3:+10899384 | None:intergenic |
| CAACACCCATTTCACAGACA+TGG | 0.497078 | 3:-10898483 | MsG0380012099.01.T01:CDS |
| GTGTTTGAAGAAAAGGGAAA+AGG | 0.499301 | 3:-10898689 | MsG0380012099.01.T01:CDS |
| AGAAGCCATGTCTGTGAAAT+GGG | 0.500618 | 3:+10898478 | None:intergenic |
| CAACGCCTGATTGCATGTGT+TGG | 0.505896 | 3:+10899383 | None:intergenic |
| TCGAATTCATTGACCGGTAG+AGG | 0.508323 | 3:+10898284 | None:intergenic |
| GTATTCTGTATCATCCTCCC+CGG | 0.510714 | 3:+10898085 | None:intergenic |
| CGATGACATTCATGATGCAT+TGG | 0.514024 | 3:-10898639 | MsG0380012099.01.T01:CDS |
| CAATGCATCATGAATGTCAT+CGG | 0.516677 | 3:+10898640 | None:intergenic |
| ATTGTTTGAAGAAGATTCGA+TGG | 0.519220 | 3:-10898738 | MsG0380012099.01.T01:CDS |
| GGTGGTGGAAAGAGGTCGGT+TGG | 0.519676 | 3:+10898982 | None:intergenic |
| CCTAAATGTTTCATGTGTCA+AGG | 0.520689 | 3:-10898863 | MsG0380012099.01.T01:CDS |
| GAAGAAGTATTCAAGCTACT+TGG | 0.520946 | 3:-10898254 | MsG0380012099.01.T01:CDS |
| ATGTTATAATTGTTGCCGTA+AGG | 0.537224 | 3:-10898151 | MsG0380012099.01.T01:CDS |
| AATGCATCATGAATGTCATC+GGG | 0.540811 | 3:+10898641 | None:intergenic |
| TGAATATGATGAATCTTTGG+AGG | 0.541738 | 3:-10898567 | MsG0380012099.01.T01:CDS |
| GAAGCATGCTTCAATTTGGT+GGG | 0.543111 | 3:-10899149 | MsG0380012099.01.T01:CDS |
| CCGGTCAATGAATTCGATGA+TGG | 0.543727 | 3:-10898278 | MsG0380012099.01.T01:CDS |
| TTGTTTGAAGAAGATTCGAT+GGG | 0.555945 | 3:-10898737 | MsG0380012099.01.T01:CDS |
| CCATCATCGAATTCATTGAC+CGG | 0.562646 | 3:+10898278 | None:intergenic |
| TTAATGTGGCAAGTATCCAT+TGG | 0.565973 | 3:+10898404 | None:intergenic |
| CTAAATGTTTCATGTGTCAA+GGG | 0.575924 | 3:-10898862 | MsG0380012099.01.T01:CDS |
| TATTCTGTATCATCCTCCCC+GGG | 0.580722 | 3:+10898086 | None:intergenic |
| AATGAGAAGGTAAATACTTG+CGG | 0.584888 | 3:+10899050 | None:intergenic |
| ATTATGTTGGGGTTTGAATG+AGG | 0.588009 | 3:+10898913 | None:intergenic |
| ATTCAGAGACAACGACATCA+AGG | 0.588760 | 3:-10899305 | MsG0380012099.01.T01:CDS |
| GTTTATTTCTCCATTAACGA+TGG | 0.589987 | 3:+10898796 | None:intergenic |
| TTGGCTTGATAATAATGAGA+AGG | 0.590868 | 3:+10899037 | None:intergenic |
| AATGGGTGTTGAAGATATCA+TGG | 0.591344 | 3:+10898495 | None:intergenic |
| AAAAGGAGACGTAAGTGTGA+AGG | 0.600789 | 3:-10899118 | MsG0380012099.01.T01:CDS |
| ATGGTATGATGTTATTCCAA+TGG | 0.609476 | 3:-10898420 | MsG0380012099.01.T01:CDS |
| GGGCGAGTTCTATTCAACCC+GGG | 0.620692 | 3:-10898103 | MsG0380012099.01.T01:CDS |
| CTTGCCACATTAATCTTGGG+AGG | 0.623721 | 3:-10898394 | MsG0380012099.01.T01:CDS |
| AGGGCGAGTTCTATTCAACC+CGG | 0.624662 | 3:-10898104 | MsG0380012099.01.T01:CDS |
| ACTTGGACTTTCACTCACAA+AGG | 0.624991 | 3:-10898237 | MsG0380012099.01.T01:CDS |
| AGATGTGATTGAAATCAAGT+TGG | 0.633383 | 3:-10898309 | MsG0380012099.01.T01:CDS |
| GCCAAAGAAGAACTATTGCT+AGG | 0.642265 | 3:-10898518 | MsG0380012099.01.T01:CDS |
| GGCGAGTTCTATTCAACCCG+GGG | 0.647812 | 3:-10898102 | MsG0380012099.01.T01:CDS |
| AGACGTGGGACAAAATGCGT+CGG | 0.661398 | 3:-10899081 | MsG0380012099.01.T01:CDS |
| AAGGCCTCCCAAGATTAATG+TGG | 0.682125 | 3:+10898390 | None:intergenic |
| GAGTTCTATTCAACCCGGGG+AGG | 0.684193 | 3:-10898099 | MsG0380012099.01.T01:CDS |
| GCGCGACGATCATATTGACA+AGG | 0.688059 | 3:+10898371 | None:intergenic |
| GATCGTCGCGCATTATACGA+TGG | 0.708406 | 3:-10898359 | MsG0380012099.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTATAAAGAAAATGTA+TGG | - | Chr3:10899091-10899110 | MsG0380012099.01.T01:CDS | 15.0% |
| !!! | CAATTGTTTTTGATTAAAAT+TGG | + | Chr3:10898515-10898534 | None:intergenic | 15.0% |
| ! | AAAGATTCATCATATTCAAC+AGG | + | Chr3:10898961-10898980 | None:intergenic | 25.0% |
| ! | CTCTATGAATGTATTATGTT+GGG | + | Chr3:10898632-10898651 | None:intergenic | 25.0% |
| ! | GATCCAATATATGATGAATA+TGG | - | Chr3:10898865-10898884 | MsG0380012099.01.T01:CDS | 25.0% |
| ! | TCTATGAATGTATTATGTTG+GGG | + | Chr3:10898631-10898650 | None:intergenic | 25.0% |
| ! | TCTCTATGAATGTATTATGT+TGG | + | Chr3:10898633-10898652 | None:intergenic | 25.0% |
| ! | TGTTGAATATGATGAATCTT+TGG | - | Chr3:10898960-10898979 | MsG0380012099.01.T01:CDS | 25.0% |
| !! | ACAATTATAACATTTTCCCA+AGG | + | Chr3:10899372-10899391 | None:intergenic | 25.0% |
| !! | TTGAGAATCGATATGATTTT+TGG | + | Chr3:10898572-10898591 | None:intergenic | 25.0% |
| AAAAAGTAAGATCAAGACGT+GGG | - | Chr3:10898435-10898454 | MsG0380012099.01.T01:CDS | 30.0% | |
| AAAGTAATCACCATCGTTAA+TGG | - | Chr3:10898724-10898743 | MsG0380012099.01.T01:CDS | 30.0% | |
| AAGTTTCTTCTTCATCCTTA+CGG | + | Chr3:10899397-10899416 | None:intergenic | 30.0% | |
| AATGAGAAGGTAAATACTTG+CGG | + | Chr3:10898483-10898502 | None:intergenic | 30.0% | |
| ACTTCACATAAGTCGTATAT+TGG | + | Chr3:10898823-10898842 | None:intergenic | 30.0% | |
| AGATGTGATTGAAATCAAGT+TGG | - | Chr3:10899221-10899240 | MsG0380012099.01.T01:CDS | 30.0% | |
| ATACTTGCCACATTAATCTT+GGG | - | Chr3:10899133-10899152 | MsG0380012099.01.T01:CDS | 30.0% | |
| ATGGTATGATGTTATTCCAA+TGG | - | Chr3:10899110-10899129 | MsG0380012099.01.T01:CDS | 30.0% | |
| ATGTTATAATTGTTGCCGTA+AGG | - | Chr3:10899379-10899398 | MsG0380012099.01.T01:CDS | 30.0% | |
| ATTGTTTGAAGAAGATTCGA+TGG | - | Chr3:10898792-10898811 | MsG0380012099.01.T01:CDS | 30.0% | |
| CAAGATGTTTGAAGAAGAAA+AGG | - | Chr3:10898756-10898775 | MsG0380012099.01.T01:CDS | 30.0% | |
| CTAAATGTTTCATGTGTCAA+GGG | - | Chr3:10898668-10898687 | MsG0380012099.01.T01:CDS | 30.0% | |
| GGACCATATTCATCATATAT+TGG | + | Chr3:10898871-10898890 | None:intergenic | 30.0% | |
| TGAATATGATGAATCTTTGG+AGG | - | Chr3:10898963-10898982 | MsG0380012099.01.T01:CDS | 30.0% | |
| TTACAGTTTCTTGTAACTGT+TGG | + | Chr3:10898102-10898121 | None:intergenic | 30.0% | |
| TTGTTTGAAGAAGATTCGAT+GGG | - | Chr3:10898793-10898812 | MsG0380012099.01.T01:CDS | 30.0% | |
| TTTACGATTGACACAATCTA+AGG | + | Chr3:10898707-10898726 | None:intergenic | 30.0% | |
| TTTGGTGGGAAAATCTTAAA+AGG | - | Chr3:10898395-10898414 | MsG0380012099.01.T01:CDS | 30.0% | |
| ! | AGAAGAAACTTTTAAACTCG+AGG | - | Chr3:10899406-10899425 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | ATGTGAAGTGTTTGAAGAAA+AGG | - | Chr3:10898834-10898853 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | ATTATAACATTTTCCCAAGG+TGG | + | Chr3:10899369-10899388 | None:intergenic | 30.0% |
| ! | GAAGAAACTTTTAAACTCGA+GGG | - | Chr3:10899407-10899426 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | GTAGATATTCCTGATTTTGA+AGG | - | Chr3:10898247-10898266 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | GTTTATTTCTCCATTAACGA+TGG | + | Chr3:10898737-10898756 | None:intergenic | 30.0% |
| ! | TAAAGAAGCATGCTTCAATT+TGG | - | Chr3:10898377-10898396 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | TGTGAAGTGTTTGAAGAAAA+GGG | - | Chr3:10898835-10898854 | MsG0380012099.01.T01:CDS | 30.0% |
| ! | TTGGCTTGATAATAATGAGA+AGG | + | Chr3:10898496-10898515 | None:intergenic | 30.0% |
| !! | AGAATCGATATGATTTTTGG+TGG | + | Chr3:10898569-10898588 | None:intergenic | 30.0% |
| !!! | GACTTTGTTTTATCCTTGAA+TGG | + | Chr3:10899321-10899340 | None:intergenic | 30.0% |
| AAAGTCATGTCTACTTTGTC+CGG | - | Chr3:10899335-10899354 | MsG0380012099.01.T01:CDS | 35.0% | |
| AAATGCACAACAAGCACAAT+TGG | - | Chr3:10898120-10898139 | MsG0380012099.01.T01:CDS | 35.0% | |
| AATGCATCATGAATGTCATC+GGG | + | Chr3:10898892-10898911 | None:intergenic | 35.0% | |
| ATGAGAAGGTAAATACTTGC+GGG | + | Chr3:10898482-10898501 | None:intergenic | 35.0% | |
| ATTATGTTGGGGTTTGAATG+AGG | + | Chr3:10898620-10898639 | None:intergenic | 35.0% | |
| CAATGCATCATGAATGTCAT+CGG | + | Chr3:10898893-10898912 | None:intergenic | 35.0% | |
| CCTAAATGTTTCATGTGTCA+AGG | - | Chr3:10898667-10898686 | MsG0380012099.01.T01:CDS | 35.0% | |
| CCTTGACACATGAAACATTT+AGG | + | Chr3:10898670-10898689 | None:intergenic | 35.0% | |
| GAAAAAGTAAGATCAAGACG+TGG | - | Chr3:10898434-10898453 | MsG0380012099.01.T01:CDS | 35.0% | |
| GATACTTGCCACATTAATCT+TGG | - | Chr3:10899132-10899151 | MsG0380012099.01.T01:CDS | 35.0% | |
| GTGTTTGAAGAAAAGGGAAA+AGG | - | Chr3:10898841-10898860 | MsG0380012099.01.T01:CDS | 35.0% | |
| TAGCAATAGTTCTTCTTTGG+CGG | + | Chr3:10899013-10899032 | None:intergenic | 35.0% | |
| TCATGATGCATTGGAAAAAG+AGG | - | Chr3:10898900-10898919 | MsG0380012099.01.T01:CDS | 35.0% | |
| TCTCTGAATGATTGTCTTTG+TGG | + | Chr3:10898214-10898233 | None:intergenic | 35.0% | |
| TGTAGCTTTCCTTCAAAATC+AGG | + | Chr3:10898259-10898278 | None:intergenic | 35.0% | |
| TTAATGTGGCAAGTATCCAT+TGG | + | Chr3:10899129-10899148 | None:intergenic | 35.0% | |
| ! | TGAATGAGGAAATAGGTTGA+TGG | + | Chr3:10898606-10898625 | None:intergenic | 35.0% |
| !! | AATGGGTGTTGAAGATATCA+TGG | + | Chr3:10899038-10899057 | None:intergenic | 35.0% |
| !! | GAAGAAGTATTCAAGCTACT+TGG | - | Chr3:10899276-10899295 | MsG0380012099.01.T01:CDS | 35.0% |
| !! | GAATGAGGAAATAGGTTGAT+GGG | + | Chr3:10898605-10898624 | None:intergenic | 35.0% |
| !!! | ATCGATATGATTTTTGGTGG+TGG | + | Chr3:10898566-10898585 | None:intergenic | 35.0% |
| AAAAGGAGACGTAAGTGTGA+AGG | - | Chr3:10898412-10898431 | MsG0380012099.01.T01:CDS | 40.0% | |
| ACTCACAAAGGAACCATTCA+AGG | - | Chr3:10899305-10899324 | MsG0380012099.01.T01:CDS | 40.0% | |
| ACTTGGACTTTCACTCACAA+AGG | - | Chr3:10899293-10899312 | MsG0380012099.01.T01:CDS | 40.0% | |
| AGAAGCCATGTCTGTGAAAT+GGG | + | Chr3:10899055-10899074 | None:intergenic | 40.0% | |
| ATCCAGATGAGTTCGTTGAT+TGG | - | Chr3:10898278-10898297 | MsG0380012099.01.T01:CDS | 40.0% | |
| ATTCAGAGACAACGACATCA+AGG | - | Chr3:10898225-10898244 | MsG0380012099.01.T01:CDS | 40.0% | |
| CAAAGACTCGTTCAACAGTT+TGG | + | Chr3:10898306-10898325 | None:intergenic | 40.0% | |
| CCATCATCGAATTCATTGAC+CGG | + | Chr3:10899255-10899274 | None:intergenic | 40.0% | |
| CGATGACATTCATGATGCAT+TGG | - | Chr3:10898891-10898910 | MsG0380012099.01.T01:CDS | 40.0% | |
| GAAGCATGCTTCAATTTGGT+GGG | - | Chr3:10898381-10898400 | MsG0380012099.01.T01:CDS | 40.0% | |
| GCCAAAGAAGAACTATTGCT+AGG | - | Chr3:10899012-10899031 | MsG0380012099.01.T01:CDS | 40.0% | |
| GCCTAGCAATAGTTCTTCTT+TGG | + | Chr3:10899016-10899035 | None:intergenic | 40.0% | |
| TAGAAGCCATGTCTGTGAAA+TGG | + | Chr3:10899056-10899075 | None:intergenic | 40.0% | |
| TGGGGTTTGAATGAGGAAAT+AGG | + | Chr3:10898613-10898632 | None:intergenic | 40.0% | |
| TGTTTCATGTGTCAAGGGTA+TGG | - | Chr3:10898673-10898692 | MsG0380012099.01.T01:CDS | 40.0% | |
| ! | AGAAGCATGCTTCAATTTGG+TGG | - | Chr3:10898380-10898399 | MsG0380012099.01.T01:CDS | 40.0% |
| !! | GAAATAGGTTGATGGGTTTG+TGG | + | Chr3:10898598-10898617 | None:intergenic | 40.0% |
| !!! | GGTCGGTTGGAAGATTTTTT+AGG | + | Chr3:10898538-10898557 | None:intergenic | 40.0% |
| !!! | TGATTTTTGGTGGTGGAAAG+AGG | + | Chr3:10898559-10898578 | None:intergenic | 40.0% |
| AACGCCTGATTGCATGTGTT+GGG | + | Chr3:10898149-10898168 | None:intergenic | 45.0% | |
| AAGGCCTCCCAAGATTAATG+TGG | + | Chr3:10899143-10899162 | None:intergenic | 45.0% | |
| AGCCAATCAACGAACTCATC+TGG | + | Chr3:10898283-10898302 | None:intergenic | 45.0% | |
| CAACACCCATTTCACAGACA+TGG | - | Chr3:10899047-10899066 | MsG0380012099.01.T01:CDS | 45.0% | |
| CCGGTCAATGAATTCGATGA+TGG | - | Chr3:10899252-10899271 | MsG0380012099.01.T01:CDS | 45.0% | |
| CTTGCCACATTAATCTTGGG+AGG | - | Chr3:10899136-10899155 | MsG0380012099.01.T01:CDS | 45.0% | |
| GTATTCTGTATCATCCTCCC+CGG | + | Chr3:10899448-10899467 | None:intergenic | 45.0% | |
| TATTCTGTATCATCCTCCCC+GGG | + | Chr3:10899447-10899466 | None:intergenic | 45.0% | |
| TCGAATTCATTGACCGGTAG+AGG | + | Chr3:10899249-10899268 | None:intergenic | 45.0% | |
| ! | ACATTTTCCCAAGGTGGCTT+AGG | + | Chr3:10899363-10899382 | None:intergenic | 45.0% |
| !! | AATCAAGTTGGCACCTCTAC+CGG | - | Chr3:10899233-10899252 | MsG0380012099.01.T01:CDS | 45.0% |
| !!! | TTTTGGTGGTGGAAAGAGGT+CGG | + | Chr3:10898555-10898574 | None:intergenic | 45.0% |
| AGACGTGGGACAAAATGCGT+CGG | - | Chr3:10898449-10898468 | MsG0380012099.01.T01:CDS | 50.0% | |
| AGGGCGAGTTCTATTCAACC+CGG | - | Chr3:10899426-10899445 | MsG0380012099.01.T01:CDS | 50.0% | |
| CAACGCCTGATTGCATGTGT+TGG | + | Chr3:10898150-10898169 | None:intergenic | 50.0% | |
| GAAGCCCAACACATGCAATC+AGG | - | Chr3:10898142-10898161 | MsG0380012099.01.T01:CDS | 50.0% | |
| GATCGTCGCGCATTATACGA+TGG | - | Chr3:10899171-10899190 | MsG0380012099.01.T01:CDS | 50.0% | |
| GCGCGACGATCATATTGACA+AGG | + | Chr3:10899162-10899181 | None:intergenic | 50.0% | |
| GAGTTCTATTCAACCCGGGG+AGG | - | Chr3:10899431-10899450 | MsG0380012099.01.T01:CDS | 55.0% | |
| GGCGAGTTCTATTCAACCCG+GGG | - | Chr3:10899428-10899447 | MsG0380012099.01.T01:CDS | 55.0% | |
| GGGCGAGTTCTATTCAACCC+GGG | - | Chr3:10899427-10899446 | MsG0380012099.01.T01:CDS | 55.0% | |
| TCCCAAGGTGGCTTAGGAAC+CGG | + | Chr3:10899357-10899376 | None:intergenic | 55.0% | |
| TCCGGTTCCTAAGCCACCTT+GGG | - | Chr3:10899353-10899372 | MsG0380012099.01.T01:CDS | 55.0% | |
| GTCCGGTTCCTAAGCCACCT+TGG | - | Chr3:10899352-10899371 | MsG0380012099.01.T01:CDS | 60.0% | |
| !! | GGTGGTGGAAAGAGGTCGGT+TGG | + | Chr3:10898551-10898570 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 10898076 | 10899476 | 10898076 | ID=MsG0380012099.01;Name=MsG0380012099.01 |
| Chr3 | mRNA | 10898076 | 10899476 | 10898076 | ID=MsG0380012099.01.T01;Parent=MsG0380012099.01;Name=MsG0380012099.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|466 |
| Chr3 | exon | 10898076 | 10899476 | 10898076 | ID=MsG0380012099.01.T01:exon:273;Parent=MsG0380012099.01.T01 |
| Chr3 | CDS | 10898076 | 10899476 | 10898076 | ID=MsG0380012099.01.T01:cds;Parent=MsG0380012099.01.T01 |
| Gene Sequence |
| Protein sequence |
