AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013114.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013114.01.T01 MTR_3g435460 98.419 253 4 0 1 253 1 253 0.0 514
MsG0380013114.01.T01 MTR_3g435460 98.919 185 2 0 69 253 8 192 2.48e-135 379
MsG0380013114.01.T01 MTR_8g023790 49.590 244 113 5 15 250 25 266 5.39e-75 229
MsG0380013114.01.T01 MTR_2g042720 51.724 203 92 2 56 252 65 267 5.47e-68 211
MsG0380013114.01.T01 MTR_3g101670 51.208 207 93 4 52 250 57 263 3.53e-65 204
MsG0380013114.01.T01 MTR_2g436960 93.103 87 6 0 167 253 16 102 1.02e-54 171
MsG0380013114.01.T01 MTR_0003s0060 87.356 87 11 0 167 253 9 95 1.93e-50 160
MsG0380013114.01.T01 MTR_5g098780 42.279 272 111 11 18 249 7 272 1.23e-48 162
MsG0380013114.01.T01 MTR_5g098785 45.133 226 91 8 51 249 55 274 1.17e-47 159
MsG0380013114.01.T01 MTR_6g033320 39.381 226 106 7 38 249 30 238 7.05e-43 146
MsG0380013114.01.T01 MTR_6g074140 70.115 87 8 1 167 253 36 104 7.15e-34 118
MsG0380013114.01.T01 MTR_6g060175 38.614 202 100 5 63 251 91 281 9.37e-33 121
MsG0380013114.01.T01 MTR_1g026550 37.736 212 100 8 63 250 125 328 1.92e-32 121
MsG0380013114.01.T01 MTR_2g008610 37.619 210 95 7 53 233 57 259 7.45e-31 115
MsG0380013114.01.T01 MTR_6g011870 36.041 197 102 5 62 243 65 252 2.38e-30 114
MsG0380013114.01.T01 MTR_6g011880 36.041 197 102 5 62 243 65 252 2.54e-30 114
MsG0380013114.01.T01 MTR_6g012080 35.533 197 103 5 62 243 65 252 2.59e-30 114
MsG0380013114.01.T01 MTR_6g011890 36.041 197 102 5 62 243 65 252 2.88e-30 114
MsG0380013114.01.T01 MTR_4g015570 33.071 254 88 6 56 250 57 287 3.21e-30 114
MsG0380013114.01.T01 MTR_4g094605 35.714 196 102 5 63 243 67 253 6.42e-30 113
MsG0380013114.01.T01 MTR_6g012110 35.533 197 103 5 62 243 65 252 9.77e-30 112
MsG0380013114.01.T01 MTR_6g060175 37.129 202 93 6 63 251 91 271 4.62e-28 108
MsG0380013114.01.T01 MTR_5g097280 31.835 267 143 9 1 243 1 252 8.29e-28 107
MsG0380013114.01.T01 MTR_2g081090 37.500 200 99 6 62 244 35 225 4.30e-27 105
MsG0380013114.01.T01 MTR_2g081090 37.500 200 99 6 62 244 62 252 6.19e-27 105
MsG0380013114.01.T01 MTR_6g043600 36.170 188 94 5 62 243 49 216 3.01e-23 94.7
MsG0380013114.01.T01 MTR_3g070340 33.476 233 73 8 56 229 60 269 3.47e-23 95.5
MsG0380013114.01.T01 MTR_5g098770 51.316 76 32 2 180 250 17 92 7.18e-16 71.2
MsG0380013114.01.T01 MTR_0003s0070 93.939 33 2 0 221 253 53 85 2.48e-15 69.7
MsG0380013114.01.T01 MTR_1g026550 44.286 70 37 1 63 130 125 194 9.32e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013114.01.T01 AT3G47470 88.446 251 28 1 1 250 1 251 5.99e-166 459
MsG0380013114.01.T01 AT3G61470 52.703 222 96 3 38 250 34 255 1.44e-74 228
MsG0380013114.01.T01 AT1G45474 49.145 234 107 6 26 249 20 251 3.04e-69 214
MsG0380013114.01.T01 AT1G45474 49.145 234 107 6 26 249 20 251 3.04e-69 214
MsG0380013114.01.T01 AT1G19150 44.635 233 123 1 24 250 36 268 5.21e-66 206
MsG0380013114.01.T01 AT1G61520 42.231 251 109 10 26 249 29 270 1.99e-46 156
MsG0380013114.01.T01 AT1G61520 42.231 251 109 10 26 249 29 270 1.99e-46 156
MsG0380013114.01.T01 AT1G61520 46.154 208 79 9 69 249 14 215 1.77e-43 147
MsG0380013114.01.T01 AT3G54890 41.176 204 90 6 55 245 47 233 3.52e-42 144
MsG0380013114.01.T01 AT3G08940 31.707 287 114 8 23 250 22 285 9.85e-32 118
MsG0380013114.01.T01 AT3G54890 35.500 200 73 4 55 245 47 199 9.86e-31 114
MsG0380013114.01.T01 AT2G05070 35.644 202 96 6 62 243 65 252 1.11e-30 115
MsG0380013114.01.T01 AT2G05100 35.644 202 96 6 62 243 65 252 1.29e-30 115
MsG0380013114.01.T01 AT1G29930 32.184 261 152 7 1 243 1 254 1.39e-30 115
MsG0380013114.01.T01 AT2G34420 32.046 259 153 7 1 243 1 252 1.60e-30 114
MsG0380013114.01.T01 AT1G29920 35.567 194 108 4 62 243 66 254 1.79e-30 114
MsG0380013114.01.T01 AT1G29910 35.567 194 108 4 62 243 66 254 1.79e-30 114
MsG0380013114.01.T01 AT1G76570 38.208 212 99 8 63 250 123 326 2.55e-30 115
MsG0380013114.01.T01 AT2G34430 35.233 193 108 4 63 243 66 253 5.45e-30 113
MsG0380013114.01.T01 AT3G27690 35.149 202 97 6 62 243 66 253 7.01e-30 113
MsG0380013114.01.T01 AT5G01530 32.567 261 94 6 49 250 51 288 7.14e-30 113
MsG0380013114.01.T01 AT3G27690 35.149 202 97 6 62 243 98 285 1.28e-29 113
MsG0380013114.01.T01 AT4G10340 37.500 200 105 6 63 251 82 272 3.57e-29 111
MsG0380013114.01.T01 AT5G54270 38.308 201 98 6 60 243 61 252 6.90e-28 107
MsG0380013114.01.T01 AT1G15820 33.465 254 125 11 16 233 11 256 2.12e-27 106
MsG0380013114.01.T01 AT3G54890 37.143 175 80 6 55 216 47 204 6.96e-25 98.6
MsG0380013114.01.T01 AT5G28450 50.495 101 44 3 156 250 71 171 1.23e-22 91.7
MsG0380013114.01.T01 AT2G05100 33.333 189 92 6 62 230 65 239 3.91e-22 93.6
MsG0380013114.01.T01 AT2G40100 31.466 232 78 6 56 229 59 267 3.23e-21 90.1
MsG0380013114.01.T01 AT3G54890 38.739 111 59 3 55 156 47 157 1.57e-17 77.8

Find 119 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTACAATTCTTAGAATT+TGG 0.071946 3:+30686114 MsG0380013114.01.T01:three_prime_UTR
TTCCCTGCATCATACCATTT+TGG 0.201569 3:-30685210 None:intergenic
CTTTCAAAATTCATCCATTC+AGG 0.215050 3:-30685981 None:intergenic
AAAGTTGGTGCAAAGTTTAA+AGG 0.247907 3:-30685411 None:intergenic
ATTGGCAATGTTGGCATTCT+TGG 0.255174 3:+30685795 MsG0380013114.01.T01:CDS
CAAACCACATGGCCGGAAAA+TGG 0.281257 3:-30684094 None:intergenic
CCAATGTTGGTGAAGACTTC+AGG 0.283187 3:-30685174 None:intergenic
TATTACAATTCTTAGAATTT+GGG 0.307565 3:+30686115 MsG0380013114.01.T01:three_prime_UTR
TTGAAATCAAGGTTCCTTAC+TGG 0.312689 3:+30684114 MsG0380013114.01.T01:CDS
CCTTTCGAAACAGTTCTCTA+TGG 0.319229 3:+30686154 MsG0380013114.01.T01:three_prime_UTR
AACATAGGCTTTCATGTCAT+TGG 0.323632 3:-30685945 None:intergenic
CTGTACATGGAAATAGATTA+AGG 0.349919 3:-30686028 None:intergenic
GAATCATCAACGTTCCAAAA+TGG 0.352591 3:+30685196 MsG0380013114.01.T01:CDS
TGTATTGATATTAGTCTTCC+CGG 0.354614 3:+30685033 MsG0380013114.01.T01:intron
GGCCATGTGGTTTGAAATCA+AGG 0.359010 3:+30684103 MsG0380013114.01.T01:CDS
TGGGCTATGTTAGGTGTTGC+AGG 0.363791 3:+30685141 MsG0380013114.01.T01:CDS
AGGAGAGTGGTTGCCTGGTT+TGG 0.364447 3:+30684221 MsG0380013114.01.T01:CDS
TGAACAGAGAAGTGTCTATT+AGG 0.379797 3:+30684151 MsG0380013114.01.T01:CDS
ACAAACCACTTCAAGTTCTC+TGG 0.381297 3:-30685093 None:intergenic
TCAAATGTTTGCAGGGAGAT+TGG 0.385168 3:+30685777 MsG0380013114.01.T01:intron
TTTAAACTTTGCACCAACTT+TGG 0.392024 3:+30685413 MsG0380013114.01.T01:CDS
TTGGCAATGTTGGCATTCTT+GGG 0.393741 3:+30685796 MsG0380013114.01.T01:CDS
TCTCAATAACAACAATATTC+CGG 0.408423 3:+30686411 MsG0380013114.01.T01:three_prime_UTR
ATTTGTACCATGACTTTCAA+TGG 0.409817 3:+30686263 MsG0380013114.01.T01:three_prime_UTR
AATGGCCATGGGTATATCAA+TGG 0.416180 3:+30686281 MsG0380013114.01.T01:three_prime_UTR
GGAAGTAAATTTAAATAATC+CGG 0.416905 3:-30686430 None:intergenic
AAGTTGGTGCAAAGTTTAAA+GGG 0.417056 3:-30685410 None:intergenic
TTCTCTTTAGCTTCCAAAGT+TGG 0.417992 3:-30685426 None:intergenic
ATTGCTTGAAGATAGGATCT+TGG 0.434539 3:-30685341 None:intergenic
TACCTGCCAGTGAGGTAACC+TGG 0.435689 3:-30684249 None:intergenic
TGGTACAAATGCTCAGTCCT+AGG 0.441979 3:-30686250 None:intergenic
TTTAAGGTTGAAGCTAAGAA+AGG 0.444868 3:+30684201 MsG0380013114.01.T01:CDS
TGGATCGAATCCGTTGTCTC+CGG 0.445088 3:-30685052 None:intergenic
TTGCCTGGTTTGGCTTCCCC+AGG 0.448150 3:+30684231 MsG0380013114.01.T01:CDS
GTCATTCAGCACAATGTGAC+AGG 0.452299 3:+30685823 MsG0380013114.01.T01:CDS
CAGCACAATGTGACAGGAAA+AGG 0.457752 3:+30685829 MsG0380013114.01.T01:CDS
CCACTTAGTTCCTCTGTACA+TGG 0.458537 3:-30686041 None:intergenic
GAAGTGTCTATTAGGCCAAT+GGG 0.459274 3:+30684159 MsG0380013114.01.T01:CDS
GGATCGAATCCGTTGTCTCC+GGG 0.465013 3:-30685051 None:intergenic
CAATGTTGGTGAAGACTTCA+GGG 0.467740 3:-30685173 None:intergenic
ATCTTCTAATCTCGACGTAA+TGG 0.468668 3:-30685287 None:intergenic
AAGCTGTATTGCTTGAAGAT+AGG 0.474202 3:-30685348 None:intergenic
GTTCAAGCCGAGCTTGTGAA+TGG 0.475321 3:+30685114 MsG0380013114.01.T01:CDS
AAGAAAGGAGAGTGGTTGCC+TGG 0.478204 3:+30684216 MsG0380013114.01.T01:CDS
GGGTAACCAACCTCACCCTT+TGG 0.479854 3:-30685372 None:intergenic
GCTTCCCCAGGTTACCTCAC+TGG 0.481809 3:+30684243 MsG0380013114.01.T01:CDS
CCTGAAGTCTTCACCAACAT+TGG 0.483026 3:+30685174 MsG0380013114.01.T01:CDS
AATGGACGTTGGGCTATGTT+AGG 0.483699 3:+30685132 MsG0380013114.01.T01:CDS
TGCAGGGAGATTGGCAATGT+TGG 0.487632 3:+30685786 MsG0380013114.01.T01:intron
ATAAAGGTTGAAAATGAAGA+TGG 0.490841 3:-30683993 None:intergenic
ACCATGACTTTCAATGGCCA+TGG 0.493783 3:+30686269 MsG0380013114.01.T01:three_prime_UTR
CGAGCTTGTGAATGGACGTT+GGG 0.494207 3:+30685122 MsG0380013114.01.T01:CDS
GGATTACATTAGAATAACAT+AGG 0.495974 3:-30685960 None:intergenic
CATAGAGAACTGTTTCGAAA+GGG 0.500532 3:-30686153 None:intergenic
TAACCTGGGGAAGCCAAACC+AGG 0.500840 3:-30684234 None:intergenic
AAAGAGAAGGAAATTGCTAA+TGG 0.501630 3:+30685441 MsG0380013114.01.T01:CDS
AGCTTGCCAAAGGGTGAGGT+TGG 0.502406 3:+30685366 MsG0380013114.01.T01:CDS
AGTGGCCATGTTCAACTACT+AGG 0.503254 3:-30684049 None:intergenic
AGACAACGGATTCGATCCAT+TGG 0.505395 3:+30685056 MsG0380013114.01.T01:CDS
GTTCCAAAATGGTATGATGC+AGG 0.505984 3:+30685207 MsG0380013114.01.T01:CDS
CCCCAGGTTACCTCACTGGC+AGG 0.512688 3:+30684247 MsG0380013114.01.T01:CDS
ACCTGCCAGTGAGGTAACCT+GGG 0.515078 3:-30684248 None:intergenic
GAACAATAGTGTTGTGCCAT+GGG 0.519149 3:-30685885 None:intergenic
GGATCCTCGGCGAGTCCCAA+TGG 0.523598 3:-30685072 None:intergenic
GGATCTTGGTTAACACTACC+AGG 0.527012 3:-30685327 None:intergenic
AACGTTGATGATTCCAATGT+TGG 0.527016 3:-30685187 None:intergenic
TGCAGCACCTTTCAGACCCA+TGG 0.527064 3:+30685869 MsG0380013114.01.T01:CDS
TATTCTAATGTAATCCTGAA+TGG 0.532739 3:+30685967 MsG0380013114.01.T01:three_prime_UTR
AAGGGTGAGGTTGGTTACCC+CGG 0.533098 3:+30685375 MsG0380013114.01.T01:CDS
TTGATTTCAAACCACATGGC+CGG 0.533466 3:-30684101 None:intergenic
CTTCAAGTTCTCTGGATCCT+CGG 0.535637 3:-30685085 None:intergenic
TCTGAAAATGAGTTTCTAAG+TGG 0.539964 3:-30686190 None:intergenic
CCATAGAGAACTGTTTCGAA+AGG 0.540031 3:-30686154 None:intergenic
AGAAGTGTCTATTAGGCCAA+TGG 0.541077 3:+30684158 MsG0380013114.01.T01:CDS
GGAATATTGTTGTTATTGAG+AGG 0.543574 3:-30686409 None:intergenic
TGCTGCAAGAGGTTATCAAA+TGG 0.555368 3:-30685853 None:intergenic
ATACAGCTTGCCAAAGGGTG+AGG 0.558596 3:+30685362 MsG0380013114.01.T01:CDS
CCATGTACAGAGGAACTAAG+TGG 0.562408 3:+30686041 MsG0380013114.01.T01:three_prime_UTR
CAAGCAATACAGCTTGCCAA+AGG 0.568836 3:+30685356 MsG0380013114.01.T01:CDS
ACTATTGTTCAAACATTGAG+TGG 0.572971 3:+30685898 MsG0380013114.01.T01:CDS
ATTACGTCGAGATTAGAAGA+TGG 0.573199 3:+30685289 MsG0380013114.01.T01:CDS
AAGCAATACAGCTTGCCAAA+GGG 0.573830 3:+30685357 MsG0380013114.01.T01:CDS
TGAACAATAGTGTTGTGCCA+TGG 0.575513 3:-30685886 None:intergenic
GGTACAAATGCTCAGTCCTA+GGG 0.580759 3:-30686249 None:intergenic
ACTTACTAGAAGAACCAGTA+AGG 0.580919 3:-30684128 None:intergenic
CTCGAGACTTCCTCATCCCT+AGG 0.582136 3:+30686233 MsG0380013114.01.T01:three_prime_UTR
ACTAGGAATAATAGTTGTAG+TGG 0.582693 3:-30684032 None:intergenic
CTGAAAATGAGTTTCTAAGT+GGG 0.583213 3:-30686189 None:intergenic
GACAACGGATTCGATCCATT+GGG 0.589479 3:+30685057 MsG0380013114.01.T01:CDS
AATGCTCAGTCCTAGGGATG+AGG 0.589538 3:-30686243 None:intergenic
GCAGAAGGTGAACACCCCAT+TGG 0.591132 3:-30684174 None:intergenic
TTCCAAAATGGTATGATGCA+GGG 0.594456 3:+30685208 MsG0380013114.01.T01:CDS
CCGAGCTTGTGAATGGACGT+TGG 0.595865 3:+30685121 MsG0380013114.01.T01:CDS
ATTAGTCTTCCCGGAGACAA+CGG 0.597783 3:+30685042 MsG0380013114.01.T01:intron
AACTTTGGAAGCTAAAGAGA+AGG 0.603921 3:+30685428 MsG0380013114.01.T01:CDS
TGTTGTGCCATGGGTCTGAA+AGG 0.604426 3:-30685876 None:intergenic
CCATGACTTTCAATGGCCAT+GGG 0.605696 3:+30686270 MsG0380013114.01.T01:three_prime_UTR
CCAACGTCCATTCACAAGCT+CGG 0.607811 3:-30685121 None:intergenic
CGATCCATTGGGACTCGCCG+AGG 0.610673 3:+30685068 MsG0380013114.01.T01:CDS
GGGCTATGTTAGGTGTTGCA+GGG 0.612177 3:+30685142 MsG0380013114.01.T01:CDS
AACCTTGATTTCAAACCACA+TGG 0.619985 3:-30684105 None:intergenic
TTGAAGCTAAGAAAGGAGAG+TGG 0.624150 3:+30684208 MsG0380013114.01.T01:CDS
AGGATCCAGAGAACTTGAAG+TGG 0.633648 3:+30685088 MsG0380013114.01.T01:CDS
TGGCAAGACATTAAGAACCC+TGG 0.635088 3:+30685309 MsG0380013114.01.T01:CDS
CATGGCCACTGTTACTACAC+AGG 0.640157 3:+30684062 MsG0380013114.01.T01:exon
AGAATCCATTGATATACCCA+TGG 0.643576 3:-30686286 None:intergenic
AAAATGAGTTTCTAAGTGGG+AGG 0.644225 3:-30686186 None:intergenic
GGTCTGAAAGGTGCTGCAAG+AGG 0.650437 3:-30685864 None:intergenic
ATTGTTCAAACATTGAGTGG+TGG 0.656377 3:+30685901 MsG0380013114.01.T01:CDS
GATTGACATACCTGCCAGTG+AGG 0.658865 3:-30684257 None:intergenic
CCCATGGCCATTGAAAGTCA+TGG 0.660828 3:-30686270 None:intergenic
TCAACCTTAAAAGAAGCAGA+AGG 0.663014 3:-30684189 None:intergenic
TTATTCCTAGTAGTTGAACA+TGG 0.665521 3:+30684044 MsG0380013114.01.T01:exon
TAATCTATTTCCATGTACAG+AGG 0.667156 3:+30686031 MsG0380013114.01.T01:three_prime_UTR
GGTGAGGTTGGTTACCCCGG+TGG 0.669754 3:+30685378 MsG0380013114.01.T01:CDS
GATCTTGGTTAACACTACCA+GGG 0.677002 3:-30685326 None:intergenic
AGAAGCCTGTGTAGTAACAG+TGG 0.678873 3:-30684067 None:intergenic
AAGTGTCTATTAGGCCAATG+GGG 0.719152 3:+30684160 MsG0380013114.01.T01:CDS
CCTGCCAGTGAGGTAACCTG+GGG 0.725693 3:-30684247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTACAATTCTTAGAATTT+GGG + Chr3:30686115-30686134 MsG0380013114.01.T01:three_prime_UTR 15.0%
!! AGCTATTATTGTATTAGTAT+AGG + Chr3:30684526-30684545 MsG0380013114.01.T01:intron 20.0%
!! ATTAAAGTCTTTGCTTAAAT+GGG + Chr3:30685503-30685522 MsG0380013114.01.T01:intron 20.0%
!! CTATTACAATTCTTAGAATT+TGG + Chr3:30686114-30686133 MsG0380013114.01.T01:three_prime_UTR 20.0%
!! GAAAATGAATGTATTATGTA+TGG + Chr3:30684982-30685001 MsG0380013114.01.T01:intron 20.0%
!! GGAAGTAAATTTAAATAATC+CGG - Chr3:30686433-30686452 None:intergenic 20.0%
!! TTGATTATGTTAATTAGATG+TGG - Chr3:30685676-30685695 None:intergenic 20.0%
!!! TCTTTTTGATTATGAAACTA+TGG + Chr3:30685737-30685756 MsG0380013114.01.T01:intron 20.0%
!!! TTTTTTGTAAATACACTTGA+TGG + Chr3:30684933-30684952 MsG0380013114.01.T01:intron 20.0%
! ATAAAGGTTGAAAATGAAGA+TGG - Chr3:30683996-30684015 None:intergenic 25.0%
! CAGTGACAAAGAAAAAATAA+AGG - Chr3:30684012-30684031 None:intergenic 25.0%
! CATTAAAGTCTTTGCTTAAA+TGG + Chr3:30685502-30685521 MsG0380013114.01.T01:intron 25.0%
! CTAAATTATCCCATCTAAAT+TGG - Chr3:30685610-30685629 None:intergenic 25.0%
! GGATTACATTAGAATAACAT+AGG - Chr3:30685963-30685982 None:intergenic 25.0%
! TATTCTAATGTAATCCTGAA+TGG + Chr3:30685967-30685986 MsG0380013114.01.T01:three_prime_UTR 25.0%
! TCTCAATAACAACAATATTC+CGG + Chr3:30686411-30686430 MsG0380013114.01.T01:three_prime_UTR 25.0%
! TTGAATATTGATCTGTATGT+TGG - Chr3:30684480-30684499 None:intergenic 25.0%
!! AATGAAGATGGAAATGTTTT+AGG - Chr3:30683984-30684003 None:intergenic 25.0%
!! CAAATTTGATCGATTTCATA+AGG + Chr3:30685693-30685712 MsG0380013114.01.T01:intron 25.0%
!!! ATGAATTTTGAAAGACATCT+AGG + Chr3:30685990-30686009 MsG0380013114.01.T01:three_prime_UTR 25.0%
!!! TGCTATTTTAGAATTTACGT+TGG + Chr3:30686322-30686341 MsG0380013114.01.T01:three_prime_UTR 25.0%
AAAGAGAAGGAAATTGCTAA+TGG + Chr3:30685441-30685460 MsG0380013114.01.T01:CDS 30.0%
ACTAGGAATAATAGTTGTAG+TGG - Chr3:30684035-30684054 None:intergenic 30.0%
ACTATTGTTCAAACATTGAG+TGG + Chr3:30685898-30685917 MsG0380013114.01.T01:CDS 30.0%
AGACTTTAATGCAGTATTTC+AGG - Chr3:30685493-30685512 None:intergenic 30.0%
ATTTGTACCATGACTTTCAA+TGG + Chr3:30686263-30686282 MsG0380013114.01.T01:three_prime_UTR 30.0%
CTGAAAATGAGTTTCTAAGT+GGG - Chr3:30686192-30686211 None:intergenic 30.0%
CTGTACATGGAAATAGATTA+AGG - Chr3:30686031-30686050 None:intergenic 30.0%
CTTTCAAAATTCATCCATTC+AGG - Chr3:30685984-30686003 None:intergenic 30.0%
GTGTATTTCAAATGTTTGCA+GGG + Chr3:30685770-30685789 MsG0380013114.01.T01:intron 30.0%
TAAAGGGTTAAAAATTCCAC+CGG - Chr3:30685397-30685416 None:intergenic 30.0%
TAATCTATTTCCATGTACAG+AGG + Chr3:30686031-30686050 MsG0380013114.01.T01:three_prime_UTR 30.0%
TCTGAAAATGAGTTTCTAAG+TGG - Chr3:30686193-30686212 None:intergenic 30.0%
TGTGTATTTCAAATGTTTGC+AGG + Chr3:30685769-30685788 MsG0380013114.01.T01:intron 30.0%
TTATTCCTAGTAGTTGAACA+TGG + Chr3:30684044-30684063 MsG0380013114.01.T01:exon 30.0%
TTTAAACTTTGCACCAACTT+TGG + Chr3:30685413-30685432 MsG0380013114.01.T01:CDS 30.0%
TTTGTAAATACACTTGATGG+AGG + Chr3:30684936-30684955 MsG0380013114.01.T01:intron 30.0%
! GGAATATTGTTGTTATTGAG+AGG - Chr3:30686412-30686431 None:intergenic 30.0%
! TTTAAGGTTGAAGCTAAGAA+AGG + Chr3:30684201-30684220 MsG0380013114.01.T01:CDS 30.0%
!! AAAGTTGGTGCAAAGTTTAA+AGG - Chr3:30685414-30685433 None:intergenic 30.0%
!! AAGTTGGTGCAAAGTTTAAA+GGG - Chr3:30685413-30685432 None:intergenic 30.0%
!! TGTATTGATATTAGTCTTCC+CGG + Chr3:30685033-30685052 MsG0380013114.01.T01:intron 30.0%
AAAATGAGTTTCTAAGTGGG+AGG - Chr3:30686189-30686208 None:intergenic 35.0%
AAAGGGTTAAAAATTCCACC+GGG - Chr3:30685396-30685415 None:intergenic 35.0%
AACATAGGCTTTCATGTCAT+TGG - Chr3:30685948-30685967 None:intergenic 35.0%
AACCTTGATTTCAAACCACA+TGG - Chr3:30684108-30684127 None:intergenic 35.0%
AAGCTGTATTGCTTGAAGAT+AGG - Chr3:30685351-30685370 None:intergenic 35.0%
ACTTACTAGAAGAACCAGTA+AGG - Chr3:30684131-30684150 None:intergenic 35.0%
AGAATCCATTGATATACCCA+TGG - Chr3:30686289-30686308 None:intergenic 35.0%
AGTGTGACATTGAAACATGT+CGG + Chr3:30684425-30684444 MsG0380013114.01.T01:intron 35.0%
ATCCCATCTAAATTGGTACT+GGG - Chr3:30685603-30685622 None:intergenic 35.0%
ATCTTCTAATCTCGACGTAA+TGG - Chr3:30685290-30685309 None:intergenic 35.0%
ATTACGTCGAGATTAGAAGA+TGG + Chr3:30685289-30685308 MsG0380013114.01.T01:CDS 35.0%
ATTGCTTGAAGATAGGATCT+TGG - Chr3:30685344-30685363 None:intergenic 35.0%
ATTGTTCAAACATTGAGTGG+TGG + Chr3:30685901-30685920 MsG0380013114.01.T01:CDS 35.0%
CATAGAGAACTGTTTCGAAA+GGG - Chr3:30686156-30686175 None:intergenic 35.0%
GAATCATCAACGTTCCAAAA+TGG + Chr3:30685196-30685215 MsG0380013114.01.T01:CDS 35.0%
GATCATGTTCAAAGACTCAA+CGG - Chr3:30684848-30684867 None:intergenic 35.0%
TATCCCATCTAAATTGGTAC+TGG - Chr3:30685604-30685623 None:intergenic 35.0%
TATGCATAAGCTCAACTCAA+GGG - Chr3:30684507-30684526 None:intergenic 35.0%
TCAACCTTAAAAGAAGCAGA+AGG - Chr3:30684192-30684211 None:intergenic 35.0%
TTCCAAAATGGTATGATGCA+GGG + Chr3:30685208-30685227 MsG0380013114.01.T01:CDS 35.0%
TTGAAATCAAGGTTCCTTAC+TGG + Chr3:30684114-30684133 MsG0380013114.01.T01:CDS 35.0%
TTGAGTCTTTGAACATGATC+TGG + Chr3:30684848-30684867 MsG0380013114.01.T01:intron 35.0%
! AACTTTGGAAGCTAAAGAGA+AGG + Chr3:30685428-30685447 MsG0380013114.01.T01:CDS 35.0%
! TTCACCTTCTGCTTCTTTTA+AGG + Chr3:30684185-30684204 MsG0380013114.01.T01:CDS 35.0%
! TTCTCTTTAGCTTCCAAAGT+TGG - Chr3:30685429-30685448 None:intergenic 35.0%
!! AACGTTGATGATTCCAATGT+TGG - Chr3:30685190-30685209 None:intergenic 35.0%
!! TGAACAGAGAAGTGTCTATT+AGG + Chr3:30684151-30684170 MsG0380013114.01.T01:CDS 35.0%
AAGCAATACAGCTTGCCAAA+GGG + Chr3:30685357-30685376 MsG0380013114.01.T01:CDS 40.0%
AAGGGTTAAAAATTCCACCG+GGG - Chr3:30685395-30685414 None:intergenic 40.0%
AAGTGTCTATTAGGCCAATG+GGG + Chr3:30684160-30684179 MsG0380013114.01.T01:CDS 40.0%
AATGGCCATGGGTATATCAA+TGG + Chr3:30686281-30686300 MsG0380013114.01.T01:three_prime_UTR 40.0%
ATGCATAAGCTCAACTCAAG+GGG - Chr3:30684506-30684525 None:intergenic 40.0%
ATTGGCAATGTTGGCATTCT+TGG + Chr3:30685795-30685814 MsG0380013114.01.T01:CDS 40.0%
CCATAGAGAACTGTTTCGAA+AGG - Chr3:30686157-30686176 None:intergenic 40.0%
CCTTTCGAAACAGTTCTCTA+TGG + Chr3:30686154-30686173 MsG0380013114.01.T01:three_prime_UTR 40.0%
CTATGCATAAGCTCAACTCA+AGG - Chr3:30684508-30684527 None:intergenic 40.0%
GAACAATAGTGTTGTGCCAT+GGG - Chr3:30685888-30685907 None:intergenic 40.0%
GATCTTGGTTAACACTACCA+GGG - Chr3:30685329-30685348 None:intergenic 40.0%
GTTCCAAAATGGTATGATGC+AGG + Chr3:30685207-30685226 MsG0380013114.01.T01:CDS 40.0%
TCAAATGTTTGCAGGGAGAT+TGG + Chr3:30685777-30685796 MsG0380013114.01.T01:intron 40.0%
TCCCATCTAAATTGGTACTG+GGG - Chr3:30685602-30685621 None:intergenic 40.0%
TCCCCAGTACCAATTTAGAT+GGG + Chr3:30685598-30685617 MsG0380013114.01.T01:intron 40.0%
TCTTTGCTTAAATGGGACCT+GGG + Chr3:30685510-30685529 MsG0380013114.01.T01:intron 40.0%
TGAACAATAGTGTTGTGCCA+TGG - Chr3:30685889-30685908 None:intergenic 40.0%
TGCTGCAAGAGGTTATCAAA+TGG - Chr3:30685856-30685875 None:intergenic 40.0%
TTGAAGCTAAGAAAGGAGAG+TGG + Chr3:30684208-30684227 MsG0380013114.01.T01:CDS 40.0%
TTGATTTCAAACCACATGGC+CGG - Chr3:30684104-30684123 None:intergenic 40.0%
TTGGCAATGTTGGCATTCTT+GGG + Chr3:30685796-30685815 MsG0380013114.01.T01:CDS 40.0%
! ACAAACCACTTCAAGTTCTC+TGG - Chr3:30685096-30685115 None:intergenic 40.0%
! CAATGTTGGTGAAGACTTCA+GGG - Chr3:30685176-30685195 None:intergenic 40.0%
! GAAGTGTCTATTAGGCCAAT+GGG + Chr3:30684159-30684178 MsG0380013114.01.T01:CDS 40.0%
! TTCCCTGCATCATACCATTT+TGG - Chr3:30685213-30685232 None:intergenic 40.0%
!! AGAAGTGTCTATTAGGCCAA+TGG + Chr3:30684158-30684177 MsG0380013114.01.T01:CDS 40.0%
!! GTGGTATTGACTTAGGATCT+GGG + Chr3:30685541-30685560 MsG0380013114.01.T01:intron 40.0%
AATGGACGTTGGGCTATGTT+AGG + Chr3:30685132-30685151 MsG0380013114.01.T01:CDS 45.0%
ACCATGACTTTCAATGGCCA+TGG + Chr3:30686269-30686288 MsG0380013114.01.T01:three_prime_UTR 45.0%
AGAAGCCTGTGTAGTAACAG+TGG - Chr3:30684070-30684089 None:intergenic 45.0%
AGGATCCAGAGAACTTGAAG+TGG + Chr3:30685088-30685107 MsG0380013114.01.T01:CDS 45.0%
AGTGGCCATGTTCAACTACT+AGG - Chr3:30684052-30684071 None:intergenic 45.0%
CAAGCAATACAGCTTGCCAA+AGG + Chr3:30685356-30685375 MsG0380013114.01.T01:CDS 45.0%
CAGCACAATGTGACAGGAAA+AGG + Chr3:30685829-30685848 MsG0380013114.01.T01:CDS 45.0%
CATTGAAACATGTCGGATGC+TGG + Chr3:30684432-30684451 MsG0380013114.01.T01:intron 45.0%
CCACTTAGTTCCTCTGTACA+TGG - Chr3:30686044-30686063 None:intergenic 45.0%
CCATGACTTTCAATGGCCAT+GGG + Chr3:30686270-30686289 MsG0380013114.01.T01:three_prime_UTR 45.0%
CCATGTACAGAGGAACTAAG+TGG + Chr3:30686041-30686060 MsG0380013114.01.T01:three_prime_UTR 45.0%
CCTGAAGTCTTCACCAACAT+TGG + Chr3:30685174-30685193 MsG0380013114.01.T01:CDS 45.0%
CTCCCCAGTACCAATTTAGA+TGG + Chr3:30685597-30685616 MsG0380013114.01.T01:intron 45.0%
GATCCTAAGTCAATACCACC+AGG - Chr3:30685540-30685559 None:intergenic 45.0%
GGATCTTGGTTAACACTACC+AGG - Chr3:30685330-30685349 None:intergenic 45.0%
GGTACAAATGCTCAGTCCTA+GGG - Chr3:30686252-30686271 None:intergenic 45.0%
GTCATTCAGCACAATGTGAC+AGG + Chr3:30685823-30685842 MsG0380013114.01.T01:CDS 45.0%
GTCTTTGCTTAAATGGGACC+TGG + Chr3:30685509-30685528 MsG0380013114.01.T01:intron 45.0%
TGCATAAGCTCAACTCAAGG+GGG - Chr3:30684505-30684524 None:intergenic 45.0%
TGGCAAGACATTAAGAACCC+TGG + Chr3:30685309-30685328 MsG0380013114.01.T01:CDS 45.0%
TGGTACAAATGCTCAGTCCT+AGG - Chr3:30686253-30686272 None:intergenic 45.0%
! AGACAACGGATTCGATCCAT+TGG + Chr3:30685056-30685075 MsG0380013114.01.T01:CDS 45.0%
! CCAATGTTGGTGAAGACTTC+AGG - Chr3:30685177-30685196 None:intergenic 45.0%
! CTTCAAGTTCTCTGGATCCT+CGG - Chr3:30685088-30685107 None:intergenic 45.0%
! GACAACGGATTCGATCCATT+GGG + Chr3:30685057-30685076 MsG0380013114.01.T01:CDS 45.0%
! GGCCATGTGGTTTGAAATCA+AGG + Chr3:30684103-30684122 MsG0380013114.01.T01:CDS 45.0%
!! ATTAGTCTTCCCGGAGACAA+CGG + Chr3:30685042-30685061 MsG0380013114.01.T01:intron 45.0%
!! GGTGGTATTGACTTAGGATC+TGG + Chr3:30685540-30685559 MsG0380013114.01.T01:intron 45.0%
AAGAAAGGAGAGTGGTTGCC+TGG + Chr3:30684216-30684235 MsG0380013114.01.T01:CDS 50.0%
AATGCTCAGTCCTAGGGATG+AGG - Chr3:30686246-30686265 None:intergenic 50.0%
ATACAGCTTGCCAAAGGGTG+AGG + Chr3:30685362-30685381 MsG0380013114.01.T01:CDS 50.0%
CAAACCACATGGCCGGAAAA+TGG - Chr3:30684097-30684116 None:intergenic 50.0%
CATGGCCACTGTTACTACAC+AGG + Chr3:30684062-30684081 MsG0380013114.01.T01:exon 50.0%
CCAACGTCCATTCACAAGCT+CGG - Chr3:30685124-30685143 None:intergenic 50.0%
CCCATGGCCATTGAAAGTCA+TGG - Chr3:30686273-30686292 None:intergenic 50.0%
CGAGCTTGTGAATGGACGTT+GGG + Chr3:30685122-30685141 MsG0380013114.01.T01:CDS 50.0%
GATTGACATACCTGCCAGTG+AGG - Chr3:30684260-30684279 None:intergenic 50.0%
GCATCGAACCTGAGACCTTA+AGG - Chr3:30685578-30685597 None:intergenic 50.0%
GTTCAAGCCGAGCTTGTGAA+TGG + Chr3:30685114-30685133 MsG0380013114.01.T01:CDS 50.0%
TCGAACCTGAGACCTTAAGG+AGG - Chr3:30685575-30685594 None:intergenic 50.0%
TGCAGGGAGATTGGCAATGT+TGG + Chr3:30685786-30685805 MsG0380013114.01.T01:intron 50.0%
TGCTTAAATGGGACCTGGGT+TGG + Chr3:30685514-30685533 MsG0380013114.01.T01:intron 50.0%
TGGATCGAATCCGTTGTCTC+CGG - Chr3:30685055-30685074 None:intergenic 50.0%
TGTCACACTCGCTACATCGA+TGG - Chr3:30684414-30684433 None:intergenic 50.0%
TGTTGTGCCATGGGTCTGAA+AGG - Chr3:30685879-30685898 None:intergenic 50.0%
! GGGCTATGTTAGGTGTTGCA+GGG + Chr3:30685142-30685161 MsG0380013114.01.T01:CDS 50.0%
! TGGGCTATGTTAGGTGTTGC+AGG + Chr3:30685141-30685160 MsG0380013114.01.T01:CDS 50.0%
!! AGGCTTCTGCAGCCATTTTC+CGG + Chr3:30684082-30684101 MsG0380013114.01.T01:CDS 50.0%
!! TGGCCTGGTGGTATTGACTT+AGG + Chr3:30685534-30685553 MsG0380013114.01.T01:intron 50.0%
ACCTGCCAGTGAGGTAACCT+GGG - Chr3:30684251-30684270 None:intergenic 55.0%
AGCTTGCCAAAGGGTGAGGT+TGG + Chr3:30685366-30685385 MsG0380013114.01.T01:CDS 55.0%
AGGAGAGTGGTTGCCTGGTT+TGG + Chr3:30684221-30684240 MsG0380013114.01.T01:CDS 55.0%
CCGAGCTTGTGAATGGACGT+TGG + Chr3:30685121-30685140 MsG0380013114.01.T01:CDS 55.0%
CTCGAGACTTCCTCATCCCT+AGG + Chr3:30686233-30686252 MsG0380013114.01.T01:three_prime_UTR 55.0%
GCAGAAGGTGAACACCCCAT+TGG - Chr3:30684177-30684196 None:intergenic 55.0%
GGATCGAATCCGTTGTCTCC+GGG - Chr3:30685054-30685073 None:intergenic 55.0%
GGGTAACCAACCTCACCCTT+TGG - Chr3:30685375-30685394 None:intergenic 55.0%
GTGCTCCTCCTTAAGGTCTC+AGG + Chr3:30685567-30685586 MsG0380013114.01.T01:intron 55.0%
TAACCTGGGGAAGCCAAACC+AGG - Chr3:30684237-30684256 None:intergenic 55.0%
TACCTGCCAGTGAGGTAACC+TGG - Chr3:30684252-30684271 None:intergenic 55.0%
TGCAGCACCTTTCAGACCCA+TGG + Chr3:30685869-30685888 MsG0380013114.01.T01:CDS 55.0%
! AAGGGTGAGGTTGGTTACCC+CGG + Chr3:30685375-30685394 MsG0380013114.01.T01:CDS 55.0%
! TGGGAGTGTGCTCCTCCTTA+AGG + Chr3:30685560-30685579 MsG0380013114.01.T01:intron 55.0%
!! GGTCTGAAAGGTGCTGCAAG+AGG - Chr3:30685867-30685886 None:intergenic 55.0%
CAATACCACCAGGCCAACCC+AGG - Chr3:30685530-30685549 None:intergenic 60.0%
CCTGCCAGTGAGGTAACCTG+GGG - Chr3:30684250-30684269 None:intergenic 60.0%
GCTTCCCCAGGTTACCTCAC+TGG + Chr3:30684243-30684262 MsG0380013114.01.T01:CDS 60.0%
!! AAATGGGACCTGGGTTGGCC+TGG + Chr3:30685519-30685538 MsG0380013114.01.T01:intron 60.0%
!! GCAGCCATTTTCCGGCCATG+TGG + Chr3:30684090-30684109 MsG0380013114.01.T01:CDS 60.0%
!! TTGCCTGGTTTGGCTTCCCC+AGG + Chr3:30684231-30684250 MsG0380013114.01.T01:CDS 60.0%
CCCCAGGTTACCTCACTGGC+AGG + Chr3:30684247-30684266 MsG0380013114.01.T01:CDS 65.0%
CGATCCATTGGGACTCGCCG+AGG + Chr3:30685068-30685087 MsG0380013114.01.T01:CDS 65.0%
GGATCCTCGGCGAGTCCCAA+TGG - Chr3:30685075-30685094 None:intergenic 65.0%
! GGTGAGGTTGGTTACCCCGG+TGG + Chr3:30685378-30685397 MsG0380013114.01.T01:CDS 65.0%
!! TGGGACCTGGGTTGGCCTGG+TGG + Chr3:30685522-30685541 MsG0380013114.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 30683951 30686455 30683951 ID=MsG0380013114.01;Name=MsG0380013114.01
Chr3 mRNA 30683951 30686455 30683951 ID=MsG0380013114.01.T01;Parent=MsG0380013114.01;Name=MsG0380013114.01.T01;_AED=0.27;_eAED=0.27;_QI=112|1|1|1|1|1|3|525|253
Chr3 exon 30685791 30686455 30685791 ID=MsG0380013114.01.T01:exon:6555;Parent=MsG0380013114.01.T01
Chr3 exon 30685047 30685462 30685047 ID=MsG0380013114.01.T01:exon:6554;Parent=MsG0380013114.01.T01
Chr3 exon 30683951 30684268 30683951 ID=MsG0380013114.01.T01:exon:6553;Parent=MsG0380013114.01.T01
Chr3 five_prime_UTR 30683951 30684062 30683951 ID=MsG0380013114.01.T01:five_prime_utr;Parent=MsG0380013114.01.T01
Chr3 CDS 30684063 30684268 30684063 ID=MsG0380013114.01.T01:cds;Parent=MsG0380013114.01.T01
Chr3 CDS 30685047 30685462 30685047 ID=MsG0380013114.01.T01:cds;Parent=MsG0380013114.01.T01
Chr3 CDS 30685791 30685930 30685791 ID=MsG0380013114.01.T01:cds;Parent=MsG0380013114.01.T01
Chr3 three_prime_UTR 30685931 30686455 30685931 ID=MsG0380013114.01.T01:three_prime_utr;Parent=MsG0380013114.01.T01
Gene Sequence

>MsG0380013114.01.T01

ATGGCCACTGTTACTACACAGGCTTCTGCAGCCATTTTCCGGCCATGTGGTTTGAAATCAAGGTTCCTTACTGGTTCTTCTAGTAAGTTGAACAGAGAAGTGTCTATTAGGCCAATGGGGTGTTCACCTTCTGCTTCTTTTAAGGTTGAAGCTAAGAAAGGAGAGTGGTTGCCTGGTTTGGCTTCCCCAGGTTACCTCACTGGCAGTCTTCCCGGAGACAACGGATTCGATCCATTGGGACTCGCCGAGGATCCAGAGAACTTGAAGTGGTTTGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCTATGTTAGGTGTTGCAGGGATGTTACTCCCTGAAGTCTTCACCAACATTGGAATCATCAACGTTCCAAAATGGTATGATGCAGGGAAAGAAGAATACTTTGCTTCATCTTCAACACTCTTTGTGATTGAGTTCATTTTGTTCCATTACGTCGAGATTAGAAGATGGCAAGACATTAAGAACCCTGGTAGTGTTAACCAAGATCCTATCTTCAAGCAATACAGCTTGCCAAAGGGTGAGGTTGGTTACCCCGGTGGAATTTTTAACCCTTTAAACTTTGCACCAACTTTGGAAGCTAAAGAGAAGGAAATTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTGTCATTCAGCACAATGTGACAGGAAAAGGACCATTTGATAACCTCTTGCAGCACCTTTCAGACCCATGGCACAACACTATTGTTCAAACATTGAGTGGTGGCAACTAA

Protein sequence

>MsG0380013114.01.T01

MATVTTQASAAIFRPCGLKSRFLTGSSSKLNREVSIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGGN*