AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027797.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027797.01.T01 MTR_4g030040 98.232 509 9 0 21 529 1 509 0.0 1023
MsG0580027797.01.T01 MTR_4g030040 94.518 529 8 1 1 529 1 508 0.0 1012
MsG0580027797.01.T01 MTR_4g030210 83.730 504 80 2 23 525 7 509 0.0 849
MsG0580027797.01.T01 MTR_8g039190 69.548 509 148 3 23 525 1 508 0.0 722
MsG0580027797.01.T01 MTR_5g080050 67.710 511 157 3 23 525 1 511 0.0 686
MsG0580027797.01.T01 MTR_5g082760 64.943 522 167 4 19 525 1 521 0.0 661
MsG0580027797.01.T01 MTR_8g039070 62.549 510 150 5 19 525 1 472 0.0 625
MsG0580027797.01.T01 MTR_8g447340 44.747 514 272 5 26 528 9 521 8.87e-167 483
MsG0580027797.01.T01 MTR_2g081930 31.907 514 322 9 28 522 19 523 1.54e-80 261
MsG0580027797.01.T01 MTR_4g120720 38.538 301 145 7 98 392 2 268 1.72e-56 190
MsG0580027797.01.T01 MTR_2g081950 31.008 387 243 6 150 517 19 400 9.66e-47 168
MsG0580027797.01.T01 MTR_4g081490 29.199 387 261 6 150 528 66 447 1.35e-45 166
MsG0580027797.01.T01 MTR_2g081960 34.127 126 81 1 29 154 17 140 2.57e-20 87.8
MsG0580027797.01.T01 MTR_4g081480 30.469 128 81 3 27 150 21 144 6.04e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027797.01.T01 AT1G16390 47.937 509 255 6 24 524 3 509 1.37e-175 505
MsG0580027797.01.T01 AT1G79360 46.731 520 258 7 24 528 3 518 3.93e-173 499
MsG0580027797.01.T01 AT1G16370 42.331 489 268 7 46 526 31 513 6.70e-137 407
MsG0580027797.01.T01 AT1G79410 43.210 486 267 6 46 526 26 507 1.92e-136 405
MsG0580027797.01.T01 AT1G73220 34.888 536 322 8 13 527 2 531 1.32e-105 327
MsG0580027797.01.T01 AT3G20660 28.244 524 352 10 15 528 8 517 2.82e-70 234
MsG0580027797.01.T01 AT3G51490 28.902 173 115 3 148 313 3 174 1.32e-12 70.9
MsG0580027797.01.T01 AT3G51490 28.902 173 115 3 148 313 53 224 1.53e-12 70.9
MsG0580027797.01.T01 AT3G51490 28.902 173 115 3 148 313 53 224 1.73e-12 70.5
MsG0580027797.01.T01 AT1G34580 24.057 424 267 18 141 525 37 444 1.45e-11 67.0
MsG0580027797.01.T01 AT1G34580 24.057 424 267 18 141 525 87 494 2.34e-11 66.6
MsG0580027797.01.T01 AT1G20840 26.415 159 106 2 162 313 68 222 7.38e-11 65.5
MsG0580027797.01.T01 AT1G20840 26.415 159 106 2 162 313 68 222 7.38e-11 65.5

Find 102 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGAATGGTTTATTT+TGG 0.180720 5:+68626522 MsG0580027797.01.T01:CDS
CGTGGAAATCGGTGTATATT+TGG 0.206428 5:+68626223 MsG0580027797.01.T01:CDS
GAATTAGAATTAGTTGAAAT+TGG 0.208964 5:-68625553 None:intergenic
GAATATTTCTGCTTCACATT+AGG 0.262371 5:+68626156 MsG0580027797.01.T01:CDS
AATATTTCTGCTTCACATTA+GGG 0.272078 5:+68626157 MsG0580027797.01.T01:CDS
GAAAGGGGTTTAGGAAGATT+TGG 0.291856 5:+68625619 MsG0580027797.01.T01:CDS
CCTCCCAGCAGATATCAAAA+AGG 0.297351 5:-68626895 None:intergenic
TTGTGTGGCTACTTATTTCT+TGG 0.297902 5:+68626623 MsG0580027797.01.T01:CDS
GAAGCTATGGCAATGCTTAA+AGG 0.298486 5:+68626336 MsG0580027797.01.T01:CDS
CAAGAATCGATGGCTTTCTT+TGG 0.301329 5:-68626653 None:intergenic
ATGGTTCTTGGTATTGGAAT+TGG 0.308137 5:+68626507 MsG0580027797.01.T01:CDS
TCCCATGACCATGAAGATTT+AGG 0.314784 5:-68625793 None:intergenic
CCGCAATCTTCGTTCTTCAT+TGG 0.331379 5:+68625886 MsG0580027797.01.T01:CDS
CGTCAATTGCAGAGTTGTTC+GGG 0.343455 5:+68626451 MsG0580027797.01.T01:CDS
GCAAAATTCCTAAATCTTCA+TGG 0.344934 5:+68625785 MsG0580027797.01.T01:CDS
GAAATGATGGAAAGGGGTTT+AGG 0.347800 5:+68625610 MsG0580027797.01.T01:CDS
GCCATCGATTCTTGTATTCT+CGG 0.352206 5:+68626662 MsG0580027797.01.T01:CDS
TGTTACATTACTCGGTTTGC+CGG 0.361066 5:+68626971 MsG0580027797.01.T01:CDS
CCTTTAGCCGTTGGAAACTT+AGG 0.365016 5:+68626549 MsG0580027797.01.T01:CDS
TGTATAATGTGTGTTATTGT+TGG 0.371116 5:+68626702 MsG0580027797.01.T01:CDS
GCGGTAATGGTTCTTGGTAT+TGG 0.379219 5:+68626501 MsG0580027797.01.T01:CDS
TCGTCAATTGCAGAGTTGTT+CGG 0.383274 5:+68626450 MsG0580027797.01.T01:CDS
TTCTCTCATGGCGGCTATAG+AGG 0.389503 5:+68624798 None:intergenic
TCCATCATTTCATCTGTTGA+AGG 0.402045 5:-68625598 None:intergenic
CAGAGTTGTTCGGGAGAAGT+TGG 0.405119 5:+68626460 MsG0580027797.01.T01:CDS
TAGATATAATTCGTGGAAAT+CGG 0.408726 5:+68626212 MsG0580027797.01.T01:CDS
ATATACCTCGGAAGAAGCTT+GGG 0.417250 5:-68624839 None:intergenic
GATTTGTGCAATGCCATGTT+TGG 0.422981 5:-68625732 None:intergenic
ATGATTGAGTAAATAATTGC+AGG 0.429182 5:-68626255 None:intergenic
TTTCTTCTCTTGTTGATCCA+TGG 0.431898 5:-68627021 None:intergenic
AAAGCGAATGGTGGCGGTAA+TGG 0.437000 5:+68626488 MsG0580027797.01.T01:CDS
TTCCTAAATCTTCATGGTCA+TGG 0.439320 5:+68625791 MsG0580027797.01.T01:CDS
CCGAGTGGAGGTTCACTGTT+GGG 0.441877 5:+68626127 MsG0580027797.01.T01:CDS
ATGGTGGCGGTAATGGTTCT+TGG 0.443762 5:+68626495 MsG0580027797.01.T01:CDS
TATATACCTCGGAAGAAGCT+TGG 0.445381 5:-68624840 None:intergenic
AACAGATGAAATGATGGAAA+GGG 0.447149 5:+68625603 MsG0580027797.01.T01:CDS
ATCGGGACAACAAGGAATTA+AGG 0.453209 5:+68626725 MsG0580027797.01.T01:CDS
TTTGGAATGCCTTTAGCCGT+TGG 0.456255 5:+68626540 MsG0580027797.01.T01:CDS
AGAGTTGTTCGGGAGAAGTT+GGG 0.457783 5:+68626461 MsG0580027797.01.T01:CDS
TTGTCTTGTGTTACATTACT+CGG 0.467042 5:+68626963 MsG0580027797.01.T01:CDS
TGTTGTGTTCAACGGTTTGA+TGG 0.467189 5:+68626590 MsG0580027797.01.T01:CDS
TATTTGGCTGTTGTGTTCAA+CGG 0.483478 5:+68626582 MsG0580027797.01.T01:CDS
TAATTCTAATTCTATTGAGC+AGG 0.490002 5:+68625564 MsG0580027797.01.T01:CDS
ATCTTAATAGATATAATTCG+TGG 0.492171 5:+68626205 MsG0580027797.01.T01:CDS
CTTGCATTAGAAGCCATCTC+GGG 0.492815 5:-68626302 None:intergenic
CTCGGAAGAAGCTTGGGGTA+TGG 0.496504 5:-68624833 None:intergenic
CTGCAATTGACGAGTAAAGC+TGG 0.497090 5:-68626440 None:intergenic
TAGAAGCCATCTCGGGGACT+CGG 0.499415 5:-68626295 None:intergenic
CCTTGCATTAGAAGCCATCT+CGG 0.501206 5:-68626303 None:intergenic
CCTAAGTTTCCAACGGCTAA+AGG 0.502513 5:-68626549 None:intergenic
GTAGTGTTTCTCACACTTGT+TGG 0.504323 5:-68626825 None:intergenic
ATGTGTGTTATTGTTGGATC+GGG 0.504656 5:+68626708 MsG0580027797.01.T01:CDS
ATTAGCTCTTTCTGATACCA+TGG 0.505100 5:+68627004 MsG0580027797.01.T01:CDS
TCCTAAATCTTCATGGTCAT+GGG 0.507054 5:+68625792 MsG0580027797.01.T01:CDS
ATAGCAATTAGAAATGGCAT+TGG 0.509273 5:+68625519 MsG0580027797.01.T01:intron
GAGAAACACTACAACATCAT+TGG 0.509406 5:+68626836 MsG0580027797.01.T01:CDS
TCCTTCAACAGATGAAATGA+TGG 0.510742 5:+68625597 MsG0580027797.01.T01:CDS
TTAGGGTATGTGTCATTGCC+TGG 0.518083 5:+68626174 MsG0580027797.01.T01:CDS
GGCTCTAAAGCGAATGGTGG+CGG 0.520323 5:+68626482 MsG0580027797.01.T01:CDS
TCTTGGTATTGGAATTGGAA+TGG 0.520997 5:+68626512 MsG0580027797.01.T01:CDS
GAAGCTTGGGGTATGGAAGA+AGG 0.522165 5:-68624826 None:intergenic
GAATCTGATGCACATGTGGT+TGG 0.527396 5:-68625754 None:intergenic
GGGTTTAGGAAGATTTGGTT+GGG 0.532129 5:+68625624 MsG0580027797.01.T01:CDS
GGGGTTTAGGAAGATTTGGT+TGG 0.533651 5:+68625623 MsG0580027797.01.T01:CDS
CTAGAAGAAACGAACCGAAA+AGG 0.540466 5:-68625912 None:intergenic
AGCCCCGGTGAATAAACAAA+AGG 0.542980 5:+68626407 MsG0580027797.01.T01:CDS
AATGTGTGTTATTGTTGGAT+CGG 0.549320 5:+68626707 MsG0580027797.01.T01:CDS
CTTGTATTCTCGGTAGCTAG+TGG 0.549620 5:+68626672 MsG0580027797.01.T01:CDS
CAACAGATGAAATGATGGAA+AGG 0.550084 5:+68625602 MsG0580027797.01.T01:CDS
ACAAAACAGTGATATCTCAA+TGG 0.553373 5:+68625827 MsG0580027797.01.T01:CDS
GACAACAAGGAATTAAGGTC+GGG 0.563112 5:+68626730 MsG0580027797.01.T01:CDS
CTATTAAGATAAGCTATACC+AGG 0.565268 5:-68626192 None:intergenic
CTCGGTTTGCCGGAGTCAAG+AGG 0.567370 5:+68626981 MsG0580027797.01.T01:CDS
AGGACGACATCAAGAAGCTA+TGG 0.579332 5:+68626323 MsG0580027797.01.T01:CDS
ACTTTAGCTGATACATCACT+TGG 0.581500 5:+68625937 MsG0580027797.01.T01:CDS
AGTAAGTTTAATAGAAGCCC+CGG 0.581651 5:+68626392 MsG0580027797.01.T01:CDS
ACCGAGTGGAGGTTCACTGT+TGG 0.582904 5:+68626126 MsG0580027797.01.T01:CDS
AAATCTTCATGGTCATGGGA+TGG 0.585898 5:+68625796 MsG0580027797.01.T01:CDS
AACAGAATAAATCCAAACAT+TGG 0.591278 5:-68626028 None:intergenic
ACAGATGAAATGATGGAAAG+GGG 0.595316 5:+68625604 MsG0580027797.01.T01:CDS
ATCGGTGTATATTTGGACAT+CGG 0.596172 5:+68626230 MsG0580027797.01.T01:CDS
TTGTTACCGAGTCCCCGAGA+TGG 0.599721 5:+68626289 MsG0580027797.01.T01:CDS
ACCGAGAATACAAGAATCGA+TGG 0.601771 5:-68626663 None:intergenic
GGACAACAAGGAATTAAGGT+CGG 0.602421 5:+68626729 MsG0580027797.01.T01:CDS
AGAGCTAATCCTCTTGACTC+CGG 0.602963 5:-68626990 None:intergenic
GATGGAAATACCGTCTTGTG+TGG 0.605544 5:+68626608 MsG0580027797.01.T01:CDS
GTCAAAACCTAAGTTTCCAA+CGG 0.615468 5:-68626556 None:intergenic
ATTGTTGGATCGGGACAACA+AGG 0.619158 5:+68626717 MsG0580027797.01.T01:CDS
CCGAGATGGCTTCTAATGCA+AGG 0.623082 5:+68626303 MsG0580027797.01.T01:CDS
ATGCCATGTTTGGTATTCGT+CGG 0.629753 5:-68625722 None:intergenic
AAATAAGTAGCCACACAAGA+CGG 0.630270 5:-68626618 None:intergenic
AAGTTGGGCTCTAAAGCGAA+TGG 0.635588 5:+68626476 MsG0580027797.01.T01:CDS
CATACCCCAAGCTTCTTCCG+AGG 0.637475 5:+68624834 MsG0580027797.01.T01:CDS
ACACCGACGAATACCAAACA+TGG 0.647674 5:+68625719 MsG0580027797.01.T01:CDS
CCCAACAGTGAACCTCCACT+CGG 0.649161 5:-68626127 None:intergenic
TTGCATTAGAAGCCATCTCG+GGG 0.669568 5:-68626301 None:intergenic
CTGAGAAAGTTAGTACCGAG+TGG 0.671581 5:+68626112 MsG0580027797.01.T01:CDS
GTTAGAATCTGATGCACATG+TGG 0.675405 5:-68625758 None:intergenic
TTGGGCTCTAAAGCGAATGG+TGG 0.677343 5:+68626479 MsG0580027797.01.T01:CDS
TATACCTCGGAAGAAGCTTG+GGG 0.677450 5:-68624838 None:intergenic
AGAAAGTTAGTACCGAGTGG+AGG 0.706492 5:+68626115 MsG0580027797.01.T01:CDS
CCAATGAAGAACGAAGATTG+CGG 0.713248 5:-68625886 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGATTAAATATAAATAAAT+AGG - Chr5:68625387-68625406 None:intergenic 10.0%
!! CCAAAATAATTATATAAAAT+TGG + Chr5:68625292-68625311 MsG0580027797.01.T01:intron 10.0%
!!! CCAATTTTATATAATTATTT+TGG - Chr5:68625295-68625314 None:intergenic 10.0%
!!! ATTTTAATAGCAATTAGAAA+TGG + Chr5:68625513-68625532 MsG0580027797.01.T01:intron 15.0%
!!! GGTTTGTTTATATATAATTA+GGG - Chr5:68625046-68625065 None:intergenic 15.0%
!!! TGGTTTGTTTATATATAATT+AGG - Chr5:68625047-68625066 None:intergenic 15.0%
!! AAAACTAAAAAATTCAATCC+TGG - Chr5:68625350-68625369 None:intergenic 20.0%
!! AATAGTAATAACAATAGCAT+AGG + Chr5:68625478-68625497 MsG0580027797.01.T01:intron 20.0%
!! ATCTTAATAGATATAATTCG+TGG + Chr5:68626205-68626224 MsG0580027797.01.T01:CDS 20.0%
!! GAATTAGAATTAGTTGAAAT+TGG - Chr5:68625556-68625575 None:intergenic 20.0%
!! TAATTAAGATGATAAAGTGA+CGG - Chr5:68625022-68625041 None:intergenic 20.0%
!! TCACTACTATCAAAATTATT+TGG + Chr5:68624941-68624960 MsG0580027797.01.T01:intron 20.0%
!! TGCTTTCAATTGAATAATAA+AGG - Chr5:68625453-68625472 None:intergenic 20.0%
!!! AAAAATGACATTTTCTCATA+CGG + Chr5:68626918-68626937 MsG0580027797.01.T01:CDS 20.0%
!!! TCTGTTTTTAAATTCTTGAT+TGG + Chr5:68626045-68626064 MsG0580027797.01.T01:CDS 20.0%
! AACAGAATAAATCCAAACAT+TGG - Chr5:68626031-68626050 None:intergenic 25.0%
! ATCAAAGTCAAACAAAAACT+TGG - Chr5:68625188-68625207 None:intergenic 25.0%
! ATGATTGAGTAAATAATTGC+AGG - Chr5:68626258-68626277 None:intergenic 25.0%
! CAATTGAATAATAAAGGCAA+AGG - Chr5:68625447-68625466 None:intergenic 25.0%
! GTTTATGTTTGTATATACCT+CGG - Chr5:68624854-68624873 None:intergenic 25.0%
! TAATTCTAATTCTATTGAGC+AGG + Chr5:68625564-68625583 MsG0580027797.01.T01:CDS 25.0%
! TAGATATAATTCGTGGAAAT+CGG + Chr5:68626212-68626231 MsG0580027797.01.T01:CDS 25.0%
!! AATATTTCTGCTTCACATTA+GGG + Chr5:68626157-68626176 MsG0580027797.01.T01:CDS 25.0%
!! TGTATAATGTGTGTTATTGT+TGG + Chr5:68626702-68626721 MsG0580027797.01.T01:CDS 25.0%
!!! CTTAGGTTTTGACATTTATT+TGG + Chr5:68626566-68626585 MsG0580027797.01.T01:CDS 25.0%
ACAAAACAGTGATATCTCAA+TGG + Chr5:68625827-68625846 MsG0580027797.01.T01:CDS 30.0%
ATAAACAAACCAAAAGTCCT+TGG + Chr5:68625055-68625074 MsG0580027797.01.T01:intron 30.0%
ATAGCAATTAGAAATGGCAT+TGG + Chr5:68625519-68625538 MsG0580027797.01.T01:intron 30.0%
CTATTAAGATAAGCTATACC+AGG - Chr5:68626195-68626214 None:intergenic 30.0%
GCAAAATTCCTAAATCTTCA+TGG + Chr5:68625785-68625804 MsG0580027797.01.T01:CDS 30.0%
TAATATAATGCAACTAGCCA+AGG - Chr5:68625075-68625094 None:intergenic 30.0%
TTGTCTTGTGTTACATTACT+CGG + Chr5:68626963-68626982 MsG0580027797.01.T01:CDS 30.0%
! AACAGATGAAATGATGGAAA+GGG + Chr5:68625603-68625622 MsG0580027797.01.T01:CDS 30.0%
! AATGTGTGTTATTGTTGGAT+CGG + Chr5:68626707-68626726 MsG0580027797.01.T01:CDS 30.0%
! GAATATTTCTGCTTCACATT+AGG + Chr5:68626156-68626175 MsG0580027797.01.T01:CDS 30.0%
! GGAATTGGAATGGTTTATTT+TGG + Chr5:68626522-68626541 MsG0580027797.01.T01:CDS 30.0%
! TTGTTTTCTCTACCAATGTT+TGG + Chr5:68626016-68626035 MsG0580027797.01.T01:CDS 30.0%
AAATAAGTAGCCACACAAGA+CGG - Chr5:68626621-68626640 None:intergenic 35.0%
ACTTTAGCTGATACATCACT+TGG + Chr5:68625937-68625956 MsG0580027797.01.T01:CDS 35.0%
AGTAAGTTTAATAGAAGCCC+CGG + Chr5:68626392-68626411 MsG0580027797.01.T01:CDS 35.0%
ATCGGTGTATATTTGGACAT+CGG + Chr5:68626230-68626249 MsG0580027797.01.T01:CDS 35.0%
GAGAAACACTACAACATCAT+TGG + Chr5:68626836-68626855 MsG0580027797.01.T01:CDS 35.0%
GTCAAAACCTAAGTTTCCAA+CGG - Chr5:68626559-68626578 None:intergenic 35.0%
TATTTGGCTGTTGTGTTCAA+CGG + Chr5:68626582-68626601 MsG0580027797.01.T01:CDS 35.0%
TCCATCATTTCATCTGTTGA+AGG - Chr5:68625601-68625620 None:intergenic 35.0%
TCCTAAATCTTCATGGTCAT+GGG + Chr5:68625792-68625811 MsG0580027797.01.T01:CDS 35.0%
TCCTTCAACAGATGAAATGA+TGG + Chr5:68625597-68625616 MsG0580027797.01.T01:CDS 35.0%
TTCCTAAATCTTCATGGTCA+TGG + Chr5:68625791-68625810 MsG0580027797.01.T01:CDS 35.0%
TTTCTTCTCTTGTTGATCCA+TGG - Chr5:68627024-68627043 None:intergenic 35.0%
! ACAGATGAAATGATGGAAAG+GGG + Chr5:68625604-68625623 MsG0580027797.01.T01:CDS 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG + Chr5:68626507-68626526 MsG0580027797.01.T01:CDS 35.0%
! ATGTGTGTTATTGTTGGATC+GGG + Chr5:68626708-68626727 MsG0580027797.01.T01:CDS 35.0%
! ATTAGCTCTTTCTGATACCA+TGG + Chr5:68627004-68627023 MsG0580027797.01.T01:CDS 35.0%
! CAACAGATGAAATGATGGAA+AGG + Chr5:68625602-68625621 MsG0580027797.01.T01:CDS 35.0%
! GTGAGACAAGCTATTGTTTT+TGG + Chr5:68626858-68626877 MsG0580027797.01.T01:CDS 35.0%
! TCTTGGTATTGGAATTGGAA+TGG + Chr5:68626512-68626531 MsG0580027797.01.T01:CDS 35.0%
! TTGTGTGGCTACTTATTTCT+TGG + Chr5:68626623-68626642 MsG0580027797.01.T01:CDS 35.0%
!! AAGCCTTTTGTTTATTCACC+GGG - Chr5:68626413-68626432 None:intergenic 35.0%
!! GAAGCCTTTTGTTTATTCAC+CGG - Chr5:68626414-68626433 None:intergenic 35.0%
!! TTCTTCATTGGTTGCCTTTT+CGG + Chr5:68625898-68625917 MsG0580027797.01.T01:CDS 35.0%
!!! TGTGCTAGTAGTTTTGTAAC+AGG + Chr5:68625859-68625878 MsG0580027797.01.T01:CDS 35.0%
AAATCTTCATGGTCATGGGA+TGG + Chr5:68625796-68625815 MsG0580027797.01.T01:CDS 40.0%
AATAACAACGTGCACAAGCA+TGG - Chr5:68625254-68625273 None:intergenic 40.0%
ACCGAGAATACAAGAATCGA+TGG - Chr5:68626666-68626685 None:intergenic 40.0%
ATATACCTCGGAAGAAGCTT+GGG - Chr5:68624842-68624861 None:intergenic 40.0%
ATCGGGACAACAAGGAATTA+AGG + Chr5:68626725-68626744 MsG0580027797.01.T01:CDS 40.0%
ATGCCATGTTTGGTATTCGT+CGG - Chr5:68625725-68625744 None:intergenic 40.0%
CAAGAATCGATGGCTTTCTT+TGG - Chr5:68626656-68626675 None:intergenic 40.0%
CCAATGAAGAACGAAGATTG+CGG - Chr5:68625889-68625908 None:intergenic 40.0%
CGTGGAAATCGGTGTATATT+TGG + Chr5:68626223-68626242 MsG0580027797.01.T01:CDS 40.0%
CTAGAAGAAACGAACCGAAA+AGG - Chr5:68625915-68625934 None:intergenic 40.0%
CTCCCAGCAGATATCAAAAA+GGG - Chr5:68626897-68626916 None:intergenic 40.0%
GAAAGGGGTTTAGGAAGATT+TGG + Chr5:68625619-68625638 MsG0580027797.01.T01:CDS 40.0%
GAAGCTATGGCAATGCTTAA+AGG + Chr5:68626336-68626355 MsG0580027797.01.T01:CDS 40.0%
GACAACAAGGAATTAAGGTC+GGG + Chr5:68626730-68626749 MsG0580027797.01.T01:CDS 40.0%
GATTTGTGCAATGCCATGTT+TGG - Chr5:68625735-68625754 None:intergenic 40.0%
GGACAACAAGGAATTAAGGT+CGG + Chr5:68626729-68626748 MsG0580027797.01.T01:CDS 40.0%
GTAGTGTTTCTCACACTTGT+TGG - Chr5:68626828-68626847 None:intergenic 40.0%
GTTAGAATCTGATGCACATG+TGG - Chr5:68625761-68625780 None:intergenic 40.0%
TATATACCTCGGAAGAAGCT+TGG - Chr5:68624843-68624862 None:intergenic 40.0%
TCCCAGCAGATATCAAAAAG+GGG - Chr5:68626896-68626915 None:intergenic 40.0%
TCCCATGACCATGAAGATTT+AGG - Chr5:68625796-68625815 None:intergenic 40.0%
TCGTCAATTGCAGAGTTGTT+CGG + Chr5:68626450-68626469 MsG0580027797.01.T01:CDS 40.0%
TGTTGTGTTCAACGGTTTGA+TGG + Chr5:68626590-68626609 MsG0580027797.01.T01:CDS 40.0%
TTCAATCCTGGCAACTACTA+TGG - Chr5:68625338-68625357 None:intergenic 40.0%
! ATTTTCTCATACGGCGTGTT+TGG + Chr5:68626927-68626946 MsG0580027797.01.T01:CDS 40.0%
! GAAATGATGGAAAGGGGTTT+AGG + Chr5:68625610-68625629 MsG0580027797.01.T01:CDS 40.0%
! GATATCACTGTTTTGTGTGC+TGG - Chr5:68625823-68625842 None:intergenic 40.0%
! GGGTTTAGGAAGATTTGGTT+GGG + Chr5:68625624-68625643 MsG0580027797.01.T01:CDS 40.0%
! TGTTACATTACTCGGTTTGC+CGG + Chr5:68626971-68626990 MsG0580027797.01.T01:CDS 40.0%
!! AGCCTTTTGTTTATTCACCG+GGG - Chr5:68626412-68626431 None:intergenic 40.0%
!! GCCATCGATTCTTGTATTCT+CGG + Chr5:68626662-68626681 MsG0580027797.01.T01:CDS 40.0%
ACACCGACGAATACCAAACA+TGG + Chr5:68625719-68625738 MsG0580027797.01.T01:CDS 45.0%
AGAGCTAATCCTCTTGACTC+CGG - Chr5:68626993-68627012 None:intergenic 45.0%
AGAGTTGTTCGGGAGAAGTT+GGG + Chr5:68626461-68626480 MsG0580027797.01.T01:CDS 45.0%
AGCCCCGGTGAATAAACAAA+AGG + Chr5:68626407-68626426 MsG0580027797.01.T01:CDS 45.0%
AGGACGACATCAAGAAGCTA+TGG + Chr5:68626323-68626342 MsG0580027797.01.T01:CDS 45.0%
ATTGTTGGATCGGGACAACA+AGG + Chr5:68626717-68626736 MsG0580027797.01.T01:CDS 45.0%
CCGCAATCTTCGTTCTTCAT+TGG + Chr5:68625886-68625905 MsG0580027797.01.T01:CDS 45.0%
CCTAAGTTTCCAACGGCTAA+AGG - Chr5:68626552-68626571 None:intergenic 45.0%
CCTCCCAGCAGATATCAAAA+AGG - Chr5:68626898-68626917 None:intergenic 45.0%
CCTTGCATTAGAAGCCATCT+CGG - Chr5:68626306-68626325 None:intergenic 45.0%
CCTTTAGCCGTTGGAAACTT+AGG + Chr5:68626549-68626568 MsG0580027797.01.T01:CDS 45.0%
CGTCAATTGCAGAGTTGTTC+GGG + Chr5:68626451-68626470 MsG0580027797.01.T01:CDS 45.0%
CTGCAATTGACGAGTAAAGC+TGG - Chr5:68626443-68626462 None:intergenic 45.0%
CTTGCATTAGAAGCCATCTC+GGG - Chr5:68626305-68626324 None:intergenic 45.0%
CTTGTATTCTCGGTAGCTAG+TGG + Chr5:68626672-68626691 MsG0580027797.01.T01:CDS 45.0%
GAATCTGATGCACATGTGGT+TGG - Chr5:68625757-68625776 None:intergenic 45.0%
GATGGAAATACCGTCTTGTG+TGG + Chr5:68626608-68626627 MsG0580027797.01.T01:CDS 45.0%
TATACCTCGGAAGAAGCTTG+GGG - Chr5:68624841-68624860 None:intergenic 45.0%
TCAATGCCATAGTAGTTGCC+AGG + Chr5:68625329-68625348 MsG0580027797.01.T01:intron 45.0%
TTGCATTAGAAGCCATCTCG+GGG - Chr5:68626304-68626323 None:intergenic 45.0%
! AGAAAGTTAGTACCGAGTGG+AGG + Chr5:68626115-68626134 MsG0580027797.01.T01:CDS 45.0%
! AGCCCCTTTTTGATATCTGC+TGG + Chr5:68626891-68626910 MsG0580027797.01.T01:CDS 45.0%
! CCTTTTTGATATCTGCTGGG+AGG + Chr5:68626895-68626914 MsG0580027797.01.T01:CDS 45.0%
! CTGAGAAAGTTAGTACCGAG+TGG + Chr5:68626112-68626131 MsG0580027797.01.T01:CDS 45.0%
! GCCCCTTTTTGATATCTGCT+GGG + Chr5:68626892-68626911 MsG0580027797.01.T01:CDS 45.0%
! GCGGTAATGGTTCTTGGTAT+TGG + Chr5:68626501-68626520 MsG0580027797.01.T01:CDS 45.0%
! GGGGTTTAGGAAGATTTGGT+TGG + Chr5:68625623-68625642 MsG0580027797.01.T01:CDS 45.0%
! TGCAACTAGCCAAGGACTTT+TGG - Chr5:68625067-68625086 None:intergenic 45.0%
! TTAGGGTATGTGTCATTGCC+TGG + Chr5:68626174-68626193 MsG0580027797.01.T01:CDS 45.0%
! TTTGGAATGCCTTTAGCCGT+TGG + Chr5:68626540-68626559 MsG0580027797.01.T01:CDS 45.0%
!! AAGTTGGGCTCTAAAGCGAA+TGG + Chr5:68626476-68626495 MsG0580027797.01.T01:CDS 45.0%
!! AGATTAAATATAAATAAATA+GGG - Chr5:68625386-68625405 None:intergenic 5.0%
CAGAGTTGTTCGGGAGAAGT+TGG + Chr5:68626460-68626479 MsG0580027797.01.T01:CDS 50.0%
CCGAGATGGCTTCTAATGCA+AGG + Chr5:68626303-68626322 MsG0580027797.01.T01:CDS 50.0%
GAAGCTTGGGGTATGGAAGA+AGG - Chr5:68624829-68624848 None:intergenic 50.0%
! GGCTTTTTGCGTTCGTCGAT+TGG + Chr5:68626066-68626085 MsG0580027797.01.T01:CDS 50.0%
!! AAAGCGAATGGTGGCGGTAA+TGG + Chr5:68626488-68626507 MsG0580027797.01.T01:CDS 50.0%
!! ATGGTGGCGGTAATGGTTCT+TGG + Chr5:68626495-68626514 MsG0580027797.01.T01:CDS 50.0%
!! TTGGGCTCTAAAGCGAATGG+TGG + Chr5:68626479-68626498 MsG0580027797.01.T01:CDS 50.0%
ACCGAGTGGAGGTTCACTGT+TGG + Chr5:68626126-68626145 MsG0580027797.01.T01:CDS 55.0%
CATACCCCAAGCTTCTTCCG+AGG + Chr5:68624834-68624853 MsG0580027797.01.T01:CDS 55.0%
CCCAACAGTGAACCTCCACT+CGG - Chr5:68626130-68626149 None:intergenic 55.0%
CCGAGTGGAGGTTCACTGTT+GGG + Chr5:68626127-68626146 MsG0580027797.01.T01:CDS 55.0%
CTCGGAAGAAGCTTGGGGTA+TGG - Chr5:68624836-68624855 None:intergenic 55.0%
TAGAAGCCATCTCGGGGACT+CGG - Chr5:68626298-68626317 None:intergenic 55.0%
TTGTTACCGAGTCCCCGAGA+TGG + Chr5:68626289-68626308 MsG0580027797.01.T01:CDS 55.0%
!! GGCTCTAAAGCGAATGGTGG+CGG + Chr5:68626482-68626501 MsG0580027797.01.T01:CDS 55.0%
! CTCGGTTTGCCGGAGTCAAG+AGG + Chr5:68626981-68627000 MsG0580027797.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 68624805 68627061 68624805 ID=MsG0580027797.01;Name=MsG0580027797.01
Chr5 mRNA 68624805 68627061 68624805 ID=MsG0580027797.01.T01;Parent=MsG0580027797.01;Name=MsG0580027797.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|2|0|529
Chr5 exon 68624805 68624855 68624805 ID=MsG0580027797.01.T01:exon:23082;Parent=MsG0580027797.01.T01
Chr5 exon 68625523 68627061 68625523 ID=MsG0580027797.01.T01:exon:23083;Parent=MsG0580027797.01.T01
Chr5 CDS 68624805 68624855 68624805 ID=MsG0580027797.01.T01:cds;Parent=MsG0580027797.01.T01
Chr5 CDS 68625523 68627061 68625523 ID=MsG0580027797.01.T01:cds;Parent=MsG0580027797.01.T01
Gene Sequence

>MsG0580027797.01.T01

ATGGCGGCTATAGAGGAGTTACCTTCTTCCATACCCCAAGCTTCTTCCGAGCAATTAGAAATGGCATTGGAAGATTCAGTTCCAATTTCAACTAATTCTAATTCTATTGAGCAGGAAAAAGTGATTCCTTCAACAGATGAAATGATGGAAAGGGGTTTAGGAAGATTTGGTTGGGTAGAATTTGTGCAATGCATTCTTGTTTCATTCGCAATGTTCTTCGACGCACAACAATCGTTCATAACGATTTACACCGACGAATACCAAACATGGCATTGCACAAATCCAACCACATGTGCATCAGATTCTAACATCTGCAAAATTCCTAAATCTTCATGGTCATGGGATGGACCAGCACACAAAACAGTGATATCTCAATGGAGTCTTGAATGTGCTAGTAGTTTTGTAACAGGTTTACCGCAATCTTCGTTCTTCATTGGTTGCCTTTTCGGTTCGTTTCTTCTAGCAACTTTAGCTGATACATCACTTGGTAGAAAGAACATGCTTGTTATGTCTTGTTTATCGATGTCTATAGTTTCAATTCTCATTGTTTTCTCTACCAATGTTTGGATTTATTCTGTTTTTAAATTCTTGATTGGCTTTTTGCGTTCGTCGATTGGAACTTGTGTTCTTGTTTTGCTAACTGAGAAAGTTAGTACCGAGTGGAGGTTCACTGTTGGGATTGTCGAATATTTCTGCTTCACATTAGGGTATGTGTCATTGCCTGGTATAGCTTATCTTAATAGATATAATTCGTGGAAATCGGTGTATATTTGGACATCGGTTCCTGCAATTATTTACTCAATCATTGCTTATATCTTTGTTACCGAGTCCCCGAGATGGCTTCTAATGCAAGGACGACATCAAGAAGCTATGGCAATGCTTAAAGGAGTTTCTTCTGTAGAGAACAGTGATGATATGATAGTAAGTTTAATAGAAGCCCCGGTGAATAAACAAAAGGCTTCGATTTTCCAGCTTTACTCGTCAATTGCAGAGTTGTTCGGGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGGTAATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGAATGCCTTTAGCCGTTGGAAACTTAGGTTTTGACATTTATTTGGCTGTTGTGTTCAACGGTTTGATGGAAATACCGTCTTGTGTGGCTACTTATTTCTTGGAGAATCGCCAAAGAAAGCCATCGATTCTTGTATTCTCGGTAGCTAGTGGCATATGTTGTATAATGTGTGTTATTGTTGGATCGGGACAACAAGGAATTAAGGTCGGGTTAGCGATGACATCGTTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATTTACATTATTGAGCTGTTTCCAACAAGTGTGAGAAACACTACAACATCATTGGTGAGACAAGCTATTGTTTTTGGTAACATTTTCAGCCCCTTTTTGATATCTGCTGGGAGGAAAAATGACATTTTCTCATACGGCGTGTTTGGAGTTGTTATCATGTTGTCTTGTGTTACATTACTCGGTTTGCCGGAGTCAAGAGGATTAGCTCTTTCTGATACCATGGATCAACAAGAGAAGAAAGATGACATGTCAGTTTAA

Protein sequence

>MsG0580027797.01.T01

MAAIEELPSSIPQASSEQLEMALEDSVPISTNSNSIEQEKVIPSTDEMMERGLGRFGWVEFVQCILVSFAMFFDAQQSFITIYTDEYQTWHCTNPTTCASDSNICKIPKSSWSWDGPAHKTVISQWSLECASSFVTGLPQSSFFIGCLFGSFLLATLADTSLGRKNMLVMSCLSMSIVSILIVFSTNVWIYSVFKFLIGFLRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSIIAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEAPVNKQKASIFQLYSSIAELFGRSWALKRMVAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEIPSCVATYFLENRQRKPSILVFSVASGICCIMCVIVGSGQQGIKVGLAMTSFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGVFGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV*