AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042858.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042858.01.T01 MTR_8g023790 99.620 263 1 0 1 263 1 263 0.0 536
MsG0880042858.01.T01 MTR_2g042720 66.822 214 71 0 50 263 49 262 1.49e-104 305
MsG0880042858.01.T01 MTR_3g435460 50.410 244 111 5 25 266 15 250 2.45e-75 230
MsG0880042858.01.T01 MTR_3g435460 56.915 188 75 2 79 266 8 189 8.01e-70 214
MsG0880042858.01.T01 MTR_3g101670 48.858 219 107 4 55 270 51 267 1.50e-66 208
MsG0880042858.01.T01 MTR_5g098780 43.644 236 108 7 50 262 36 269 1.46e-52 172
MsG0880042858.01.T01 MTR_5g098785 43.038 237 109 7 50 262 37 271 3.07e-52 172
MsG0880042858.01.T01 MTR_6g033320 40.976 205 93 7 66 261 49 234 2.23e-40 140
MsG0880042858.01.T01 MTR_6g011880 36.704 267 117 12 32 263 13 262 1.77e-38 135
MsG0880042858.01.T01 MTR_6g011870 36.330 267 118 12 32 263 13 262 7.84e-38 134
MsG0880042858.01.T01 MTR_4g094605 35.000 280 123 11 1 256 6 250 3.83e-37 132
MsG0880042858.01.T01 MTR_6g011890 36.090 266 118 12 33 263 14 262 1.47e-36 130
MsG0880042858.01.T01 MTR_5g097280 37.931 232 105 10 48 256 34 249 3.13e-36 130
MsG0880042858.01.T01 MTR_6g012110 34.884 258 122 10 28 256 9 249 4.99e-36 129
MsG0880042858.01.T01 MTR_6g012080 34.496 258 123 10 28 256 9 249 1.22e-35 128
MsG0880042858.01.T01 MTR_1g026550 31.615 291 166 8 1 269 50 329 1.95e-35 129
MsG0880042858.01.T01 MTR_4g015570 30.612 294 117 6 31 261 13 282 1.96e-34 126
MsG0880042858.01.T01 MTR_2g008610 37.668 223 106 6 38 237 36 248 6.07e-34 124
MsG0880042858.01.T01 MTR_2g081090 34.940 249 121 11 32 256 17 248 3.28e-33 122
MsG0880042858.01.T01 MTR_2g081090 36.574 216 101 9 61 256 22 221 7.91e-33 120
MsG0880042858.01.T01 MTR_6g060175 37.118 229 107 7 61 270 74 284 6.25e-32 119
MsG0880042858.01.T01 MTR_6g043600 37.634 186 92 6 73 256 50 213 3.01e-27 105
MsG0880042858.01.T01 MTR_6g060175 34.934 229 102 8 61 270 74 274 1.13e-26 105
MsG0880042858.01.T01 MTR_3g070340 31.535 241 87 7 60 246 54 270 7.45e-25 100
MsG0880042858.01.T01 MTR_5g098770 50.725 69 33 1 194 262 21 88 1.03e-16 73.9
MsG0880042858.01.T01 MTR_2g436960 47.778 90 41 2 177 266 16 99 2.08e-16 73.2
MsG0880042858.01.T01 MTR_1g026550 34.058 138 73 4 24 148 70 202 1.04e-15 74.7
MsG0880042858.01.T01 MTR_0003s0060 42.708 96 49 2 171 266 3 92 2.04e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042858.01.T01 AT3G61470 89.545 220 22 1 45 263 33 252 3.48e-146 410
MsG0880042858.01.T01 AT1G19150 61.215 214 83 0 50 263 52 265 9.45e-100 293
MsG0880042858.01.T01 AT3G47470 53.081 211 93 2 51 261 42 246 1.19e-74 228
MsG0880042858.01.T01 AT1G45474 45.455 242 120 4 40 270 16 256 5.93e-64 201
MsG0880042858.01.T01 AT1G45474 45.455 242 120 4 40 270 16 256 5.93e-64 201
MsG0880042858.01.T01 AT5G28450 90.816 98 9 0 166 263 71 168 4.51e-62 193
MsG0880042858.01.T01 AT1G61520 43.265 245 114 8 35 256 19 261 7.37e-54 176
MsG0880042858.01.T01 AT1G61520 43.265 245 114 8 35 256 19 261 7.37e-54 176
MsG0880042858.01.T01 AT1G61520 45.641 195 87 7 79 256 14 206 4.21e-44 149
MsG0880042858.01.T01 AT3G54890 42.439 205 90 7 66 261 48 233 8.33e-42 144
MsG0880042858.01.T01 AT3G27690 35.036 274 139 11 4 256 27 282 7.83e-39 137
MsG0880042858.01.T01 AT2G05100 36.330 267 132 11 10 256 1 249 1.39e-38 136
MsG0880042858.01.T01 AT1G29930 36.653 251 129 9 28 256 9 251 4.46e-38 135
MsG0880042858.01.T01 AT2G34420 35.887 248 133 8 28 256 9 249 5.03e-38 134
MsG0880042858.01.T01 AT1G15820 38.222 225 108 6 37 237 28 245 5.94e-38 134
MsG0880042858.01.T01 AT2G05070 38.785 214 97 8 61 256 52 249 9.94e-38 134
MsG0880042858.01.T01 AT1G29920 36.255 251 130 9 28 256 9 251 2.58e-37 133
MsG0880042858.01.T01 AT1G29910 36.255 251 130 9 28 256 9 251 2.58e-37 133
MsG0880042858.01.T01 AT3G27690 36.293 259 144 9 10 256 1 250 5.29e-37 132
MsG0880042858.01.T01 AT2G34430 39.896 193 101 6 72 256 65 250 1.16e-36 131
MsG0880042858.01.T01 AT5G54270 38.308 201 92 7 73 256 64 249 9.29e-34 124
MsG0880042858.01.T01 AT5G01530 32.677 254 93 5 62 261 54 283 3.04e-33 123
MsG0880042858.01.T01 AT1G76570 31.724 290 149 9 3 264 56 324 7.38e-33 122
MsG0880042858.01.T01 AT3G08940 32.677 254 93 5 62 261 51 280 3.52e-32 120
MsG0880042858.01.T01 AT4G10340 39.706 204 108 7 61 256 65 261 6.10e-31 116
MsG0880042858.01.T01 AT3G54890 37.073 205 67 6 66 261 48 199 1.86e-29 110
MsG0880042858.01.T01 AT2G05100 32.616 279 143 13 10 264 1 258 4.40e-29 112
MsG0880042858.01.T01 AT3G54890 39.286 168 75 6 66 225 48 196 6.90e-29 109
MsG0880042858.01.T01 AT2G40100 31.818 242 86 6 62 249 55 271 9.60e-26 102
MsG0880042858.01.T01 AT3G54890 58.333 60 25 0 66 125 48 107 5.48e-18 79.3
MsG0880042858.01.T01 AT3G08940 31.707 123 35 2 62 141 51 167 1.68e-11 62.8

Find 94 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGATCTTTGTTAGGAATTC+TGG 0.125070 8:+14986647 None:intergenic
GGCAGTCTCCCAGGAGATTT+TGG 0.155478 8:-14987373 MsG0880042858.01.T01:CDS
CATGGAGGAGGGGTGCTTCC+TGG 0.289446 8:+14987403 None:intergenic
CAAAGTGAATTAGTGAGTTT+TGG 0.292319 8:+14988019 MsG0880042859.01.T01:CDS
TTGGTTTGATCCACTTGGTT+GGG 0.309908 8:-14986417 MsG0880042858.01.T01:CDS
TTCCTGTGAGCTTGTTGTTC+GGG 0.337815 8:+14986465 None:intergenic
TTTGCTCACCTTGCTGATCC+TGG 0.353914 8:-14986263 MsG0880042858.01.T01:CDS
GATCCACTTGGTTGGGGAAG+TGG 0.368672 8:-14986410 MsG0880042858.01.T01:CDS
CGATCTTTGTTAGGAATTCT+GGG 0.372235 8:+14986648 None:intergenic
TCAAGATGCCGATCTTTGTT+AGG 0.378876 8:+14986639 None:intergenic
GGGAACCACAAAGGTCTATC+AGG 0.385925 8:+14987424 None:intergenic
AGCTTGTTGTTCGGGAAGAT+AGG 0.387684 8:+14986473 None:intergenic
ATGGAGGAGGGGTGCTTCCT+GGG 0.394126 8:+14987404 None:intergenic
ACATTCCATTTCAGACTCTC+TGG 0.395922 8:+14986728 None:intergenic
GTTCCTGTGAGCTTGTTGTT+CGG 0.399754 8:+14986464 None:intergenic
GGAAATTAAGAATGGGAGAT+TGG 0.401117 8:-14986354 MsG0880042858.01.T01:CDS
ACCCCTCCTCCATGGCTAGA+TGG 0.401270 8:-14987394 MsG0880042858.01.T01:CDS
AGAGACTTGCCTTGGAGAAA+TGG 0.404995 8:+14987931 None:intergenic
ATTGGCTATGTTGGCTGTGA+TGG 0.416001 8:-14986336 MsG0880042858.01.T01:CDS
TCGGTTGGGCCGAGGGTAGA+AGG 0.424965 8:-14986535 MsG0880042858.01.T01:CDS
CTGAGCCTGATAGACCTTTG+TGG 0.428063 8:-14987429 MsG0880042858.01.T01:CDS
TGTTGGCTGTGATGGGAGCT+TGG 0.430184 8:-14986328 MsG0880042858.01.T01:CDS
CACTGCAGATGGGCAATGTT+GGG 0.431773 8:-14986689 MsG0880042858.01.T01:CDS
GCATCTTGAACACACCTTCA+TGG 0.443608 8:-14986625 MsG0880042858.01.T01:CDS
TAGGGTACCCTGGTGGACTT+TGG 0.445153 8:-14986436 MsG0880042858.01.T01:CDS
TTTGGTTTGATCCACTTGGT+TGG 0.450965 8:-14986418 MsG0880042858.01.T01:CDS
GTGGTAGATCTCACTCTAAC+TGG 0.456746 8:+14987469 None:intergenic
TCTAAACTAGGAGGTATTGA+TGG 0.461661 8:+14986214 None:intergenic
AGAACAAAGGAAATTAAGAA+TGG 0.462272 8:-14986362 MsG0880042858.01.T01:CDS
CTGATCCAGAGAGTCTGAAA+TGG 0.467545 8:-14986733 MsG0880042858.01.T01:CDS
TGGTTCTCCTCAGAAGCTTA+AGG 0.470286 8:-14986390 MsG0880042858.01.T01:CDS
TGGTTTGATCCACTTGGTTG+GGG 0.471868 8:-14986416 MsG0880042858.01.T01:CDS
AATTCACTTTGATCCCTTGA+GGG 0.473147 8:-14988007 MsG0880042858.01.T01:five_prime_UTR
TGGGCAATGTTGGGAGCAGC+AGG 0.473188 8:-14986680 MsG0880042858.01.T01:CDS
CAGAGCTTGTGCACTGCAGA+TGG 0.481288 8:-14986700 MsG0880042858.01.T01:CDS
GATAGACCTTTGTGGTTCCC+AGG 0.481293 8:-14987421 MsG0880042858.01.T01:CDS
GCATGCAGTTCTCAGAAGAA+TGG 0.493993 8:-14987559 MsG0880042858.01.T01:intron
AAGCTCACAGGAACTGATGT+AGG 0.494000 8:-14986455 MsG0880042858.01.T01:CDS
TGAGCAAAGAGGTTATCAAT+AGG 0.495483 8:+14986278 None:intergenic
GAATGGGAGATTGGCTATGT+TGG 0.500964 8:-14986345 MsG0880042858.01.T01:CDS
GGATCAAATCCAAAATCTCC+TGG 0.502658 8:+14987364 None:intergenic
GGACTTTGGTTTGATCCACT+TGG 0.512408 8:-14986422 MsG0880042858.01.T01:CDS
TGATACTGTTCTTGCCCTCA+AGG 0.513416 8:+14987993 MsG0880042859.01.T01:CDS
GAACAAAGGAAATTAAGAAT+GGG 0.513870 8:-14986361 MsG0880042858.01.T01:CDS
ACACCTTCATGGTACACTGC+TGG 0.517592 8:-14986614 MsG0880042858.01.T01:CDS
GGGTCAGTGTTGACACAACC+TGG 0.522086 8:+14986494 None:intergenic
GTCAGCCCACCTTCTACCCT+CGG 0.523129 8:+14986526 None:intergenic
TGGGCTGACATCCTCAATCC+AGG 0.525106 8:-14986512 MsG0880042858.01.T01:CDS
GGATCAAACCAAAGTCCACC+AGG 0.526848 8:+14986428 None:intergenic
TTGGCTATGTTGGCTGTGAT+GGG 0.528445 8:-14986335 MsG0880042858.01.T01:CDS
CTCAACTCCTTAAGCTTCTG+AGG 0.529219 8:+14986383 None:intergenic
TGGTTATGAGAATGATTGGT+TGG 0.532403 8:+14988039 MsG0880042859.01.T01:CDS
TGGCTAGATGGCAGTCTCCC+AGG 0.536159 8:-14987382 MsG0880042858.01.T01:CDS
CAGCACATTTACACTGGCAC+TGG 0.541333 8:-14986302 MsG0880042858.01.T01:CDS
GCTTGTTGTTCGGGAAGATA+GGG 0.542213 8:+14986474 None:intergenic
GCCATCTAGCCATGGAGGAG+GGG 0.546298 8:+14987393 None:intergenic
TTGGGCCGAGGGTAGAAGGT+GGG 0.548941 8:-14986531 MsG0880042858.01.T01:CDS
TGCCATCTAGCCATGGAGGA+GGG 0.550191 8:+14987392 None:intergenic
CAGTGCCAGTGTAAATGTGC+TGG 0.552448 8:+14986303 None:intergenic
AGAAATGGCAACAGCTGCAA+TGG 0.552836 8:+14987946 None:intergenic
CCAGAATTCCTAACAAAGAT+CGG 0.554190 8:-14986647 MsG0880042858.01.T01:CDS
CAGCTGTTGCCATTTCTCCA+AGG 0.555483 8:-14987940 MsG0880042858.01.T01:intron
GCACTGCAGATGGGCAATGT+TGG 0.556685 8:-14986690 MsG0880042858.01.T01:CDS
CTGCCATCTAGCCATGGAGG+AGG 0.559386 8:+14987391 None:intergenic
TAATTCACTTTGATCCCTTG+AGG 0.566836 8:-14988008 MsG0880042858.01.T01:five_prime_UTR
CAGGAAGCACCCCTCCTCCA+TGG 0.569573 8:-14987402 MsG0880042858.01.T01:CDS
TTCCCGAACAACAAGCTCAC+AGG 0.571770 8:-14986467 MsG0880042858.01.T01:CDS
TCAGAAGAATGGATCACCCA+TGG 0.581832 8:-14987548 MsG0880042858.01.T01:CDS
GTTGGGCCGAGGGTAGAAGG+TGG 0.588510 8:-14986532 MsG0880042858.01.T01:CDS
TGAGGGCAAGAACAGTATCA+TGG 0.591469 8:-14987990 MsG0880042858.01.T01:exon
AGAGCTTGTGCACTGCAGAT+GGG 0.595843 8:-14986699 MsG0880042858.01.T01:CDS
TGGTTCCAGCACATTTACAC+TGG 0.596820 8:-14986308 MsG0880042858.01.T01:CDS
GGGAGACTGCCATCTAGCCA+TGG 0.602036 8:+14987385 None:intergenic
AGCTGCTGCACACACTGTTG+TGG 0.606490 8:+14987450 None:intergenic
GGAACTGATGTAGGGTACCC+TGG 0.613660 8:-14986446 MsG0880042858.01.T01:CDS
GCTTAAGGAGTTGAGAACAA+AGG 0.614983 8:-14986375 MsG0880042858.01.T01:CDS
GTGCTTCCTGGGAACCACAA+AGG 0.617314 8:+14987415 None:intergenic
GATCAAATCCAAAATCTCCT+GGG 0.619038 8:+14987365 None:intergenic
GATACTGTTCTTGCCCTCAA+GGG 0.624491 8:+14987994 MsG0880042859.01.T01:CDS
AGCTCACAGGAACTGATGTA+GGG 0.630925 8:-14986454 MsG0880042858.01.T01:CDS
TCTCCAGCAGTGTACCATGA+AGG 0.631666 8:+14986611 None:intergenic
TGTTGACACAACCTGGATTG+AGG 0.633547 8:+14986501 None:intergenic
CAGAAGAATGGATCACCCAT+GGG 0.634694 8:-14987547 MsG0880042858.01.T01:CDS
GATCAGCAAGGTGAGCAAAG+AGG 0.646872 8:+14986267 None:intergenic
AATATGCAATCTAAACTAGG+AGG 0.648490 8:+14986205 None:intergenic
GCGAAAATAGTAGCATGACC+AGG 0.658859 8:+14986245 None:intergenic
GAACCACTTCCCCAACCAAG+TGG 0.665438 8:+14986407 None:intergenic
TTAAGCTTACAAAGTCCAAG+AGG 0.666846 8:+14987343 None:intergenic
TAGCATGACCAGGATCAGCA+AGG 0.674432 8:+14986255 None:intergenic
AGACTGCCATCTAGCCATGG+AGG 0.705683 8:+14987388 None:intergenic
CTCAACTATGAAGAGTGTGG+TGG 0.729773 8:+14986568 None:intergenic
GAGCTCAACTATGAAGAGTG+TGG 0.734291 8:+14986565 None:intergenic
GATCAAACCAAAGTCCACCA+GGG 0.744097 8:+14986429 None:intergenic
ACTGATGTAGGGTACCCTGG+TGG 0.744440 8:-14986443 MsG0880042858.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAATAATCTTATAAAA+AGG + Chr8:14987202-14987221 None:intergenic 10.0%
!! ATATAGTAACCAATTTAACT+AGG + Chr8:14986537-14986556 None:intergenic 20.0%
!! CTTGATCAAATATTTGAATT+TGG + Chr8:14987120-14987139 None:intergenic 20.0%
!! TATAGTAACCAATTTAACTA+GGG + Chr8:14986536-14986555 None:intergenic 20.0%
!! TCAAGAAAAATTAAGAAAGT+TGG + Chr8:14987398-14987417 None:intergenic 20.0%
!!! TCAAGAGGATTTTATATTTA+GGG + Chr8:14987165-14987184 None:intergenic 20.0%
!!! TCAATTTTTTGTTACTGAAT+CGG - Chr8:14986947-14986966 MsG0880042858.01.T01:intron 20.0%
! AGAACAAAGGAAATTAAGAA+TGG - Chr8:14987898-14987917 MsG0880042858.01.T01:intron 25.0%
! ATAGTAACCAATTTAACTAG+GGG + Chr8:14986535-14986554 None:intergenic 25.0%
! CAACACTTTGATGAATATTA+TGG + Chr8:14987489-14987508 None:intergenic 25.0%
! CATAATATTCATCAAAGTGT+TGG - Chr8:14987487-14987506 MsG0880042858.01.T01:CDS 25.0%
! GAACAAAGGAAATTAAGAAT+GGG - Chr8:14987899-14987918 MsG0880042858.01.T01:intron 25.0%
! GATGTAGCATATACTAATTA+TGG + Chr8:14987266-14987285 None:intergenic 25.0%
! GCATGTAATAAATACTAAGA+TGG - Chr8:14987296-14987315 MsG0880042858.01.T01:intron 25.0%
!! CTCAAGAGGATTTTATATTT+AGG + Chr8:14987166-14987185 None:intergenic 25.0%
!! GGATTTTCTACATTAGTAAA+AGG + Chr8:14987099-14987118 None:intergenic 25.0%
!! TACTCTTTAGAAGAGAAAAT+TGG + Chr8:14987331-14987350 None:intergenic 25.0%
!! TTTTCTTGATTTAGTCAACA+TGG - Chr8:14987409-14987428 MsG0880042858.01.T01:CDS 25.0%
ATTAGACGAGTTGTATTAGA+CGG - Chr8:14987044-14987063 MsG0880042858.01.T01:intron 30.0%
TGAATCGGATTGATTACAAT+CGG - Chr8:14986962-14986981 MsG0880042858.01.T01:intron 30.0%
! ATAGTTGAGCTCATTTTCAT+CGG - Chr8:14987706-14987725 MsG0880042858.01.T01:intron 30.0%
! CAAAGTGAATTAGTGAGTTT+TGG + Chr8:14986244-14986263 None:intergenic 30.0%
! GAGGATTTTATATTTAGGGA+CGG + Chr8:14987161-14987180 None:intergenic 30.0%
! TTTTCTTGGAAGGAAATTGA+AGG - Chr8:14986748-14986767 MsG0880042858.01.T01:intron 30.0%
!!! GTTTTGGTTATGAGAATGAT+TGG + Chr8:14986228-14986247 None:intergenic 30.0%
AATTCACTTTGATCCCTTGA+GGG - Chr8:14986253-14986272 MsG0880042858.01.T01:CDS 35.0%
ACAACTCGTCTAATCAAGAT+CGG + Chr8:14987038-14987057 None:intergenic 35.0%
CCAGAATTCCTAACAAAGAT+CGG - Chr8:14987613-14987632 MsG0880042858.01.T01:intron 35.0%
CGATCTTTGTTAGGAATTCT+GGG + Chr8:14987615-14987634 None:intergenic 35.0%
GAGCAATGAAAAAACTCAAG+AGG + Chr8:14987180-14987199 None:intergenic 35.0%
GATCAAATCCAAAATCTCCT+GGG + Chr8:14986898-14986917 None:intergenic 35.0%
GGAAATTAAGAATGGGAGAT+TGG - Chr8:14987906-14987925 MsG0880042858.01.T01:intron 35.0%
GGTCATGTATTTAGAGACAA+CGG - Chr8:14987430-14987449 MsG0880042858.01.T01:CDS 35.0%
TAATTCACTTTGATCCCTTG+AGG - Chr8:14986252-14986271 MsG0880042858.01.T01:CDS 35.0%
TGAGCAAAGAGGTTATCAAT+AGG + Chr8:14987985-14988004 MsG0880042859.01.T01:CDS 35.0%
TGGTTATGAGAATGATTGGT+TGG + Chr8:14986224-14986243 None:intergenic 35.0%
TGTCAAACCCCTAGTTAAAT+TGG - Chr8:14986525-14986544 MsG0880042858.01.T01:CDS 35.0%
TTAAGCTTACAAAGTCCAAG+AGG + Chr8:14986920-14986939 None:intergenic 35.0%
! GATTTTGGATTTGATCCTCT+TGG - Chr8:14986902-14986921 MsG0880042858.01.T01:intron 35.0%
!!! GTGGTCTTATTTTCCTTGTT+GGG - Chr8:14987452-14987471 MsG0880042858.01.T01:CDS 35.0%
ACATTCCATTTCAGACTCTC+TGG + Chr8:14987535-14987554 None:intergenic 40.0%
CATGTATTTAGAGACAACGG+TGG - Chr8:14987433-14987452 MsG0880042858.01.T01:CDS 40.0%
CCGATCTTTGTTAGGAATTC+TGG + Chr8:14987616-14987635 None:intergenic 40.0%
GCTTAAGGAGTTGAGAACAA+AGG - Chr8:14987885-14987904 MsG0880042858.01.T01:intron 40.0%
GGATCAAATCCAAAATCTCC+TGG + Chr8:14986899-14986918 None:intergenic 40.0%
TCAAGATGCCGATCTTTGTT+AGG + Chr8:14987624-14987643 None:intergenic 40.0%
! CCTCAAAAGCTTTTCTTGGA+AGG - Chr8:14986738-14986757 MsG0880042858.01.T01:CDS 40.0%
! CCTTCCAAGAAAAGCTTTTG+AGG + Chr8:14986741-14986760 None:intergenic 40.0%
! GGAACCTCAAAAGCTTTTCT+TGG - Chr8:14986734-14986753 MsG0880042858.01.T01:CDS 40.0%
! TTGAGCTCATTTTCATCGGT+TGG - Chr8:14987710-14987729 MsG0880042858.01.T01:intron 40.0%
! TTGGTTTGATCCACTTGGTT+GGG - Chr8:14987843-14987862 MsG0880042858.01.T01:intron 40.0%
!! TGAGCTCATTTTCATCGGTT+GGG - Chr8:14987711-14987730 MsG0880042858.01.T01:intron 40.0%
!! TTTGGTTTGATCCACTTGGT+TGG - Chr8:14987842-14987861 MsG0880042858.01.T01:intron 40.0%
!!! AAAAGCTTTTGAGGTTCCCA+TGG + Chr8:14986732-14986751 None:intergenic 40.0%
!!! AAAGCTTTTGAGGTTCCCAT+GGG + Chr8:14986731-14986750 None:intergenic 40.0%
!!! GGTGGTCTTATTTTCCTTGT+TGG - Chr8:14987451-14987470 MsG0880042858.01.T01:CDS 40.0%
AAGCTCACAGGAACTGATGT+AGG - Chr8:14987805-14987824 MsG0880042858.01.T01:intron 45.0%
AGAAATGGCAACAGCTGCAA+TGG + Chr8:14986317-14986336 None:intergenic 45.0%
AGAGACTTGCCTTGGAGAAA+TGG + Chr8:14986332-14986351 None:intergenic 45.0%
AGCTCACAGGAACTGATGTA+GGG - Chr8:14987806-14987825 MsG0880042858.01.T01:intron 45.0%
CAGAAGAATGGATCACCCAT+GGG - Chr8:14986713-14986732 MsG0880042858.01.T01:CDS 45.0%
CAGTGTCTGACTCTAGTGAT+AGG - Chr8:14986419-14986438 MsG0880042858.01.T01:CDS 45.0%
CTCAACTCCTTAAGCTTCTG+AGG + Chr8:14987880-14987899 None:intergenic 45.0%
CTGATCCAGAGAGTCTGAAA+TGG - Chr8:14987527-14987546 MsG0880042858.01.T01:CDS 45.0%
GAGCTCAACTATGAAGAGTG+TGG + Chr8:14987698-14987717 None:intergenic 45.0%
GATACTGTTCTTGCCCTCAA+GGG + Chr8:14986269-14986288 None:intergenic 45.0%
GATCAAACCAAAGTCCACCA+GGG + Chr8:14987834-14987853 None:intergenic 45.0%
GCATCTTGAACACACCTTCA+TGG - Chr8:14987635-14987654 MsG0880042858.01.T01:intron 45.0%
GCATGCAGTTCTCAGAAGAA+TGG - Chr8:14986701-14986720 MsG0880042858.01.T01:CDS 45.0%
GCGAAAATAGTAGCATGACC+AGG + Chr8:14988018-14988037 MsG0880042859.01.T01:CDS 45.0%
GGTCAGTTGTATTCCCAACA+AGG + Chr8:14987468-14987487 None:intergenic 45.0%
GTGGTAGATCTCACTCTAAC+TGG + Chr8:14986794-14986813 None:intergenic 45.0%
GTGTTTGTAGAGACTTGCCT+TGG + Chr8:14986340-14986359 None:intergenic 45.0%
TCAGAAGAATGGATCACCCA+TGG - Chr8:14986712-14986731 MsG0880042858.01.T01:CDS 45.0%
TGAGGGCAAGAACAGTATCA+TGG - Chr8:14986270-14986289 MsG0880042858.01.T01:CDS 45.0%
TGATACTGTTCTTGCCCTCA+AGG + Chr8:14986270-14986289 None:intergenic 45.0%
TGGTTCCAGCACATTTACAC+TGG - Chr8:14987952-14987971 MsG0880042858.01.T01:CDS 45.0%
TGGTTCTCCTCAGAAGCTTA+AGG - Chr8:14987870-14987889 MsG0880042858.01.T01:intron 45.0%
TGGTTTGATCCACTTGGTTG+GGG - Chr8:14987844-14987863 MsG0880042858.01.T01:intron 45.0%
TGTTGACACAACCTGGATTG+AGG + Chr8:14987762-14987781 None:intergenic 45.0%
! ATTGGCTATGTTGGCTGTGA+TGG - Chr8:14987924-14987943 MsG0880042858.01.T01:intron 45.0%
! CTCAACTATGAAGAGTGTGG+TGG + Chr8:14987695-14987714 None:intergenic 45.0%
! GAATGGGAGATTGGCTATGT+TGG - Chr8:14987915-14987934 MsG0880042858.01.T01:intron 45.0%
! TTGGCTATGTTGGCTGTGAT+GGG - Chr8:14987925-14987944 MsG0880042858.01.T01:intron 45.0%
!! AGCTTGTTGTTCGGGAAGAT+AGG + Chr8:14987790-14987809 None:intergenic 45.0%
!! GCTTGTTGTTCGGGAAGATA+GGG + Chr8:14987789-14987808 None:intergenic 45.0%
!! GGACTTTGGTTTGATCCACT+TGG - Chr8:14987838-14987857 MsG0880042858.01.T01:intron 45.0%
!! GTTCCTGTGAGCTTGTTGTT+CGG + Chr8:14987799-14987818 None:intergenic 45.0%
!! TTCCTGTGAGCTTGTTGTTC+GGG + Chr8:14987798-14987817 None:intergenic 45.0%
ACACCTTCATGGTACACTGC+TGG - Chr8:14987646-14987665 MsG0880042858.01.T01:intron 50.0%
AGAGCTTGTGCACTGCAGAT+GGG - Chr8:14987561-14987580 MsG0880042858.01.T01:intron 50.0%
CACTGCAGATGGGCAATGTT+GGG - Chr8:14987571-14987590 MsG0880042858.01.T01:intron 50.0%
CAGCACATTTACACTGGCAC+TGG - Chr8:14987958-14987977 MsG0880042858.01.T01:CDS 50.0%
CAGTGCCAGTGTAAATGTGC+TGG + Chr8:14987960-14987979 MsG0880042859.01.T01:CDS 50.0%
CTGAGCCTGATAGACCTTTG+TGG - Chr8:14986831-14986850 MsG0880042858.01.T01:intron 50.0%
GATAGACCTTTGTGGTTCCC+AGG - Chr8:14986839-14986858 MsG0880042858.01.T01:intron 50.0%
GATCAGCAAGGTGAGCAAAG+AGG + Chr8:14987996-14988015 MsG0880042859.01.T01:CDS 50.0%
GGATCAAACCAAAGTCCACC+AGG + Chr8:14987835-14987854 None:intergenic 50.0%
GGGAACCACAAAGGTCTATC+AGG + Chr8:14986839-14986858 None:intergenic 50.0%
TAGCATGACCAGGATCAGCA+AGG + Chr8:14988008-14988027 MsG0880042859.01.T01:CDS 50.0%
TCTCCAGCAGTGTACCATGA+AGG + Chr8:14987652-14987671 None:intergenic 50.0%
TTCCCGAACAACAAGCTCAC+AGG - Chr8:14987793-14987812 MsG0880042858.01.T01:intron 50.0%
TTGCGCAACTGCGTCAACTT+TGG - Chr8:14987073-14987092 MsG0880042858.01.T01:intron 50.0%
TTTGCTCACCTTGCTGATCC+TGG - Chr8:14987997-14988016 MsG0880042858.01.T01:five_prime_UTR 50.0%
! CAGCTGTTGCCATTTCTCCA+AGG - Chr8:14986320-14986339 MsG0880042858.01.T01:CDS 50.0%
!! ATTTTCATCGGTTGGGCCGA+GGG - Chr8:14987718-14987737 MsG0880042858.01.T01:intron 50.0%
AGACTGCCATCTAGCCATGG+AGG + Chr8:14986875-14986894 None:intergenic 55.0%
AGCTGCTGCACACACTGTTG+TGG + Chr8:14986813-14986832 None:intergenic 55.0%
CAGAGCTTGTGCACTGCAGA+TGG - Chr8:14987560-14987579 MsG0880042858.01.T01:intron 55.0%
GAACCACTTCCCCAACCAAG+TGG + Chr8:14987856-14987875 None:intergenic 55.0%
GATCCACTTGGTTGGGGAAG+TGG - Chr8:14987850-14987869 MsG0880042858.01.T01:intron 55.0%
GCACTGCAGATGGGCAATGT+TGG - Chr8:14987570-14987589 MsG0880042858.01.T01:intron 55.0%
GTGCTTCCTGGGAACCACAA+AGG + Chr8:14986848-14986867 None:intergenic 55.0%
TGCCATCTAGCCATGGAGGA+GGG + Chr8:14986871-14986890 None:intergenic 55.0%
TGGGCTGACATCCTCAATCC+AGG - Chr8:14987748-14987767 MsG0880042858.01.T01:intron 55.0%
! ACTGATGTAGGGTACCCTGG+TGG - Chr8:14987817-14987836 MsG0880042858.01.T01:intron 55.0%
! GGAACTGATGTAGGGTACCC+TGG - Chr8:14987814-14987833 MsG0880042858.01.T01:intron 55.0%
! GGCAGTCTCCCAGGAGATTT+TGG - Chr8:14986887-14986906 MsG0880042858.01.T01:intron 55.0%
! TGTTGGCTGTGATGGGAGCT+TGG - Chr8:14987932-14987951 MsG0880042858.01.T01:intron 55.0%
!! CATTTTCATCGGTTGGGCCG+AGG - Chr8:14987717-14987736 MsG0880042858.01.T01:intron 55.0%
!! GGGTCAGTGTTGACACAACC+TGG + Chr8:14987769-14987788 None:intergenic 55.0%
!! TAGGGTACCCTGGTGGACTT+TGG - Chr8:14987824-14987843 MsG0880042858.01.T01:intron 55.0%
ACCCCTCCTCCATGGCTAGA+TGG - Chr8:14986866-14986885 MsG0880042858.01.T01:intron 60.0%
CTGCCATCTAGCCATGGAGG+AGG + Chr8:14986872-14986891 None:intergenic 60.0%
GCCATCTAGCCATGGAGGAG+GGG + Chr8:14986870-14986889 None:intergenic 60.0%
GGGAGACTGCCATCTAGCCA+TGG + Chr8:14986878-14986897 None:intergenic 60.0%
GTCAGCCCACCTTCTACCCT+CGG + Chr8:14987737-14987756 None:intergenic 60.0%
TGGCTAGATGGCAGTCTCCC+AGG - Chr8:14986878-14986897 MsG0880042858.01.T01:intron 60.0%
TGGGCAATGTTGGGAGCAGC+AGG - Chr8:14987580-14987599 MsG0880042858.01.T01:intron 60.0%
TTGGGCCGAGGGTAGAAGGT+GGG - Chr8:14987729-14987748 MsG0880042858.01.T01:intron 60.0%
!! ATGGAGGAGGGGTGCTTCCT+GGG + Chr8:14986859-14986878 None:intergenic 60.0%
GTTGGGCCGAGGGTAGAAGG+TGG - Chr8:14987728-14987747 MsG0880042858.01.T01:intron 65.0%
TCGGTTGGGCCGAGGGTAGA+AGG - Chr8:14987725-14987744 MsG0880042858.01.T01:intron 65.0%
!! CAGGAAGCACCCCTCCTCCA+TGG - Chr8:14986858-14986877 MsG0880042858.01.T01:intron 65.0%
!! CATGGAGGAGGGGTGCTTCC+TGG + Chr8:14986860-14986879 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 14986220 14988062 14986220 ID=MsG0880042858.01;Name=MsG0880042858.01
Chr8 mRNA 14986220 14988062 14986220 ID=MsG0880042858.01.T01;Parent=MsG0880042858.01;Name=MsG0880042858.01.T01;_AED=0.42;_eAED=0.42;_QI=69|1|0.66|1|0.5|0.33|3|0|270
Chr8 exon 14986220 14986758 14986220 ID=MsG0880042858.01.T01:exon:1396;Parent=MsG0880042858.01.T01
Chr8 exon 14987353 14987573 14987353 ID=MsG0880042858.01.T01:exon:1395;Parent=MsG0880042858.01.T01
Chr8 exon 14987941 14988062 14987941 ID=MsG0880042858.01.T01:exon:1394;Parent=MsG0880042858.01.T01
Chr8 five_prime_UTR 14987994 14988062 14987994 ID=MsG0880042858.01.T01:five_prime_utr;Parent=MsG0880042858.01.T01
Chr8 CDS 14987941 14987993 14987941 ID=MsG0880042858.01.T01:cds;Parent=MsG0880042858.01.T01
Chr8 CDS 14987353 14987573 14987353 ID=MsG0880042858.01.T01:cds;Parent=MsG0880042858.01.T01
Chr8 CDS 14986220 14986758 14986220 ID=MsG0880042858.01.T01:cds;Parent=MsG0880042858.01.T01
Gene Sequence

>MsG0880042858.01.T01

ATGGCTTCTGCTTGTGCTTCTTCTGCCATTGCAGCTGTTGCCATTTCTCCAAGTTCTCAGAAGAATGGATCACCCATGGGAACCTCAAAAGCTTTTCTTGGAAGGAAATTGAAGGTGAACAGCAACACTGCAGCACCAGTTAGAGTGAGATCTACCACAACAGTGTGTGCAGCAGCTGAGCCTGATAGACCTTTGTGGTTCCCAGGAAGCACCCCTCCTCCATGGCTAGATGGCAGTCTCCCAGGAGATTTTGGATTTGATCCTCTTGGACTTTCATCTGATCCAGAGAGTCTGAAATGGAATGTTCAAGCAGAGCTTGTGCACTGCAGATGGGCAATGTTGGGAGCAGCAGGAATTTTCATCCCAGAATTCCTAACAAAGATCGGCATCTTGAACACACCTTCATGGTACACTGCTGGAGAGCAAGAGTATTTCACAGACACCACCACACTCTTCATAGTTGAGCTCATTTTCATCGGTTGGGCCGAGGGTAGAAGGTGGGCTGACATCCTCAATCCAGGTTGTGTCAACACTGACCCTATCTTCCCGAACAACAAGCTCACAGGAACTGATGTAGGGTACCCTGGTGGACTTTGGTTTGATCCACTTGGTTGGGGAAGTGGTTCTCCTCAGAAGCTTAAGGAGTTGAGAACAAAGGAAATTAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGAGCTTGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGATAACCTCTTTGCTCACCTTGCTGATCCTGGTCATGCTACTATTTTCGCTGTAAGTTCCATCAATACCTCCTAG

Protein sequence

>MsG0880042858.01.T01

MASACASSAIAAVAISPSSQKNGSPMGTSKAFLGRKLKVNSNTAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAVSSINTS*