AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041783.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041783.01.T02 MTR_7g117970 95.610 205 9 0 1 205 61 265 2.04e-143 400
MsG0780041783.01.T01 MTR_7g117970 95.610 205 9 0 1 205 61 265 2.04e-143 400
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041783.01.T02 AT3G61870 79.803 203 39 1 5 205 70 272 3.00e-116 332
MsG0780041783.01.T02 AT3G61870 77.931 145 30 1 5 147 70 214 3.73e-80 239
MsG0780041783.01.T01 AT3G61870 79.803 203 39 1 5 205 70 272 3.00e-116 332
MsG0780041783.01.T01 AT3G61870 77.931 145 30 1 5 147 70 214 3.73e-80 239

Find 42 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGCAATGTGAAGATTTC+TGG 0.157106 7:-95106603 None:intergenic
TTTACTTTCAAATCAGTATT+TGG 0.215965 7:+95106753 MsG0780041783.01.T01:intron
CTACAGGCATTACCGTCTTA+TGG 0.261340 7:+95106531 MsG0780041783.01.T01:intron
TGATCAACGGAAAATATCTA+AGG 0.322176 7:-95107583 None:intergenic
ACGTTCAAATTATTACATAA+AGG 0.346870 7:+95106908 MsG0780041783.01.T01:intron
CCACTGGACTTGATATTGTA+TGG 0.370736 7:+95106663 MsG0780041783.01.T01:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 7:+95106532 MsG0780041783.01.T01:intron
AAATGCATCATATATATTCA+TGG 0.389220 7:+95107644 MsG0780041783.01.T01:three_prime_UTR
CGAAGATACATTAATGAGGT+TGG 0.408804 7:-95107512 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 7:+95106687 MsG0780041783.01.T01:CDS
CAAGAGGCAAGCCTTAAAAC+AGG 0.419777 7:-95107450 None:intergenic
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 7:-95106578 None:intergenic
GAAGATACATTAATGAGGTT+GGG 0.452396 7:-95107511 None:intergenic
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 7:+95106647 MsG0780041783.01.T01:CDS
TCATGGAATTCCTGAGTTTG+TGG 0.470739 7:+95107661 MsG0780041783.01.T01:three_prime_UTR
GTTTGATTAAAGGGACATCA+TGG 0.474909 7:+95107380 MsG0780041783.01.T01:intron
TTAAAGGGACATCATGGATC+CGG 0.474966 7:+95107386 MsG0780041783.01.T01:intron
TACTACATTATACAAAAGAA+TGG 0.484619 7:-95106870 None:intergenic
AACTGAGAGCTAAGTAAAGA+AGG 0.498417 7:-95107556 None:intergenic
CTCTATCATTGAACTCGACC+CGG 0.522465 7:-95107405 None:intergenic
CAAATTATTACATAAAGGAA+TGG 0.528285 7:+95106913 MsG0780041783.01.T01:intron
CATTACCGTCTTATGGGCAC+TGG 0.546801 7:+95106538 MsG0780041783.01.T01:CDS
AACAGCAAGTTTGTGATCAA+CGG 0.547060 7:-95107596 None:intergenic
ACTCAAATGTACACAACAAG+AGG 0.562024 7:-95107466 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 7:+95106633 MsG0780041783.01.T01:CDS
ATATGAGAATCATACATTCA+AGG 0.567075 7:-95106710 None:intergenic
TAAAGGGACATCATGGATCC+GGG 0.567503 7:+95107387 MsG0780041783.01.T01:intron
ATTTAGAATACCACAAACTC+AGG 0.578677 7:-95107671 None:intergenic
TCTTCGAAGATACATTAATG+AGG 0.586730 7:-95107516 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 7:-95106543 None:intergenic
GTTCAATGATAGAGATGAGA+CGG 0.590996 7:+95107414 MsG0780041783.01.T01:three_prime_UTR
TGATTTGAAAGTAAAATACC+TGG 0.592116 7:-95106745 None:intergenic
TCACTGCCTTTCTGCATCGG+TGG 0.596727 7:-95106575 None:intergenic
CTAGTACCACCGATGCAGAA+AGG 0.597429 7:+95106569 MsG0780041783.01.T01:CDS
TCATATGTAAGTAAGTTCCC+AGG 0.624277 7:+95106727 MsG0780041783.01.T01:intron
CAATTATGTTACGAGGTCAA+AGG 0.625786 7:-95106814 None:intergenic
CCATACAATATCAAGTCCAG+TGG 0.632516 7:-95106663 None:intergenic
AAGAGGCAAGCCTTAAAACA+GGG 0.655431 7:-95107449 None:intergenic
CATACAATATCAAGTCCAGT+GGG 0.666329 7:-95106662 None:intergenic
GATTTGAAAGTAAAATACCT+GGG 0.670780 7:-95106744 None:intergenic
AGAGGCAAGCCTTAAAACAG+GGG 0.702527 7:-95107448 None:intergenic
TGACACGCAATTATGTTACG+AGG 0.708840 7:-95106821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTAGATGTAAATAA+AGG + Chr7:95107144-95107163 MsG0780041783.01.T01:intron 15.0%
!!! TTATTATTTTTTGTGATGTA+AGG + Chr7:95105064-95105083 MsG0780041783.01.T01:intron 15.0%
!! AAATGCATCATATATATTCA+TGG + Chr7:95107644-95107663 MsG0780041783.01.T01:three_prime_UTR 20.0%
!! AAATTAAAACAAAGTTGAAG+TGG - Chr7:95107315-95107334 None:intergenic 20.0%
!! AATTTAGATTAAATCAAGCA+AGG + Chr7:95106994-95107013 MsG0780041783.01.T01:intron 20.0%
!! ACGTTCAAATTATTACATAA+AGG + Chr7:95106908-95106927 MsG0780041783.01.T01:intron 20.0%
!! CAAATTATTACATAAAGGAA+TGG + Chr7:95106913-95106932 MsG0780041783.01.T01:intron 20.0%
!! CAATTGTTTAGAAATATTGT+TGG + Chr7:95106961-95106980 MsG0780041783.01.T01:intron 20.0%
!! TACTACATTATACAAAAGAA+TGG - Chr7:95106873-95106892 None:intergenic 20.0%
!! TTAATTTCTTTCATGAAACA+AGG + Chr7:95107328-95107347 MsG0780041783.01.T01:intron 20.0%
!! TTTACTTTCAAATCAGTATT+TGG + Chr7:95106753-95106772 MsG0780041783.01.T01:intron 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG - Chr7:95105591-95105610 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG + Chr7:95106381-95106400 MsG0780041783.01.T01:intron 20.0%
!!! CACATAAAATATTAGTTTGT+TGG - Chr7:95106378-95106397 None:intergenic 20.0%
!!! TAAAGAAAATTGATAACACT+TGG + Chr7:95106497-95106516 MsG0780041783.01.T01:intron 20.0%
! AAACCTAAACCAAGTTATTA+AGG - Chr7:95107364-95107383 None:intergenic 25.0%
! AAGCATGCAATAATACATAA+AGG - Chr7:95104985-95105004 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG - Chr7:95105548-95105567 None:intergenic 25.0%
! AATAGGGGTTACTTAAAATT+CGG - Chr7:95106282-95106301 None:intergenic 25.0%
! ACATAGATGAACTTATTAGT+GGG + Chr7:95105826-95105845 MsG0780041783.01.T01:intron 25.0%
! AGCATGCAATAATACATAAA+GGG - Chr7:95104984-95105003 None:intergenic 25.0%
! ATATGAGAATCATACATTCA+AGG - Chr7:95106713-95106732 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG - Chr7:95105209-95105228 None:intergenic 25.0%
! GATTTGAAAGTAAAATACCT+GGG - Chr7:95106747-95106766 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG - Chr7:95105549-95105568 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG + Chr7:95106129-95106148 MsG0780041783.01.T01:intron 25.0%
! TCTTATCTTTATCCCAAAAT+TGG - Chr7:95106412-95106431 None:intergenic 25.0%
! TGATTTGAAAGTAAAATACC+TGG - Chr7:95106748-95106767 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG - Chr7:95105483-95105502 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG + Chr7:95106382-95106401 MsG0780041783.01.T01:intron 25.0%
!! TTGGTTTAGGTTTGATTAAA+GGG + Chr7:95107371-95107390 MsG0780041783.01.T01:intron 25.0%
!!! CACAAACTTGTTAAATCATA+AGG + Chr7:95105793-95105812 MsG0780041783.01.T01:intron 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG - Chr7:95105484-95105503 None:intergenic 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG - Chr7:95105977-95105996 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG - Chr7:95105978-95105997 None:intergenic 25.0%
AAAGTAGTAAAGTGAAGGTT+GGG - Chr7:95105882-95105901 None:intergenic 30.0%
AACTTATCAAAGGTTCATAC+AGG + Chr7:95105316-95105335 MsG0780041783.01.T01:CDS 30.0%
ACTTATCAAAGGTTCATACA+GGG + Chr7:95105317-95105336 MsG0780041783.01.T01:CDS 30.0%
AGATGACAGGGTATAAATTT+AGG - Chr7:95105622-95105641 None:intergenic 30.0%
AGCAAGGTCAAATATTCTAT+AGG + Chr7:95107010-95107029 MsG0780041783.01.T01:intron 30.0%
AGTACATTTAGAAAACAGAG+GGG - Chr7:95105547-95105566 None:intergenic 30.0%
AGTGGTAGTTTCATTAACTA+TGG + Chr7:95105180-95105199 MsG0780041783.01.T01:intron 30.0%
ATAACCTTACTAAAAGAAGC+TGG + Chr7:95107180-95107199 MsG0780041783.01.T01:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG + Chr7:95106435-95106454 MsG0780041783.01.T01:intron 30.0%
ATCCATAACTTGACTAAACA+AGG + Chr7:95105936-95105955 MsG0780041783.01.T01:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG + Chr7:95106160-95106179 MsG0780041783.01.T01:intron 30.0%
ATGTATTATGTATGAGGACT+CGG + Chr7:95107224-95107243 MsG0780041783.01.T01:intron 30.0%
ATGTATTATTGCATGCTTCT+TGG + Chr7:95104987-95105006 MsG0780041783.01.T01:intron 30.0%
ATTAAGAAGAACTTTCTCTC+AGG - Chr7:95105916-95105935 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG + Chr7:95105825-95105844 MsG0780041783.01.T01:intron 30.0%
CATGTACTTAAGAATTAGAG+GGG + Chr7:95106159-95106178 MsG0780041783.01.T01:intron 30.0%
CTAAGTTTGTAATTAGTGAG+AGG + Chr7:95105220-95105239 MsG0780041783.01.T01:intron 30.0%
GAAGATACATTAATGAGGTT+GGG - Chr7:95107514-95107533 None:intergenic 30.0%
GATGACAGGGTATAAATTTA+GGG - Chr7:95105621-95105640 None:intergenic 30.0%
GCATGTACTTAAGAATTAGA+GGG + Chr7:95106158-95106177 MsG0780041783.01.T01:intron 30.0%
GCTGTATGTTGAAAATTTGA+AGG + Chr7:95107080-95107099 MsG0780041783.01.T01:intron 30.0%
GCTGTTTAAAAATGCATCAA+GGG - Chr7:95105516-95105535 None:intergenic 30.0%
GTCACATTGAGAGAAAAATA+AGG + Chr7:95106128-95106147 MsG0780041783.01.T01:intron 30.0%
TATATTCAATCTGACGAAGT+TGG + Chr7:95106434-95106453 MsG0780041783.01.T01:intron 30.0%
TCCATAACTTGACTAAACAA+GGG + Chr7:95105937-95105956 MsG0780041783.01.T01:intron 30.0%
TCTTCGAAGATACATTAATG+AGG - Chr7:95107519-95107538 None:intergenic 30.0%
TGATCAACGGAAAATATCTA+AGG - Chr7:95107586-95107605 None:intergenic 30.0%
TTCTTCTATACTCTATATGC+TGG + Chr7:95104785-95104804 MsG0780041783.01.T01:CDS 30.0%
TTTCATTAACTATGGTATCC+TGG + Chr7:95105188-95105207 MsG0780041783.01.T01:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG + Chr7:95106687-95106706 MsG0780041783.01.T01:CDS 30.0%
! ACAATTTGTTCAAACGTTCA+AGG - Chr7:95105751-95105770 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG - Chr7:95105635-95105654 None:intergenic 30.0%
! ATTTAGAATACCACAAACTC+AGG - Chr7:95107674-95107693 None:intergenic 30.0%
! ATTTTCAACATACAGCTTAC+TGG - Chr7:95107076-95107095 None:intergenic 30.0%
! CATTTTGAATAGTCCTAACT+CGG - Chr7:95104832-95104851 None:intergenic 30.0%
! CTTGGTTTAGGTTTGATTAA+AGG + Chr7:95107370-95107389 MsG0780041783.01.T01:intron 30.0%
! CTTTGTTTGAGATATAGAGT+CGG - Chr7:95107283-95107302 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG - Chr7:95105634-95105653 None:intergenic 30.0%
! TGCTGTTTAAAAATGCATCA+AGG - Chr7:95105517-95105536 None:intergenic 30.0%
! TTTGTGATGTAAGGACTTTT+CGG + Chr7:95105073-95105092 MsG0780041783.01.T01:intron 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG - Chr7:95105575-95105594 None:intergenic 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG + Chr7:95106193-95106212 MsG0780041783.01.T01:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG + Chr7:95106323-95106342 MsG0780041783.01.T01:intron 30.0%
AACAGCAAGTTTGTGATCAA+CGG - Chr7:95107599-95107618 None:intergenic 35.0%
AACTGAGAGCTAAGTAAAGA+AGG - Chr7:95107559-95107578 None:intergenic 35.0%
ACTCAAATGTACACAACAAG+AGG - Chr7:95107469-95107488 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG - Chr7:95105909-95105928 None:intergenic 35.0%
AGCTCCTTCTAGATTAAGTA+CGG - Chr7:95105687-95105706 None:intergenic 35.0%
AGGGATAAACACTTTAATGC+TGG + Chr7:95105336-95105355 MsG0780041783.01.T01:CDS 35.0%
ATCGAGTATCTCTGAACAAT+AGG - Chr7:95106299-95106318 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG + Chr7:95105560-95105579 MsG0780041783.01.T01:intron 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG - Chr7:95105883-95105902 None:intergenic 35.0%
CAATTATGTTACGAGGTCAA+AGG - Chr7:95106817-95106836 None:intergenic 35.0%
CAGTAACCAACCAACAAATT+AGG - Chr7:95105278-95105297 None:intergenic 35.0%
CATAACTTGACTAAACAAGG+GGG + Chr7:95105939-95105958 MsG0780041783.01.T01:intron 35.0%
CATACAATATCAAGTCCAGT+GGG - Chr7:95106665-95106684 None:intergenic 35.0%
CATTGAGAGAAAAATAAGGG+AGG + Chr7:95106132-95106151 MsG0780041783.01.T01:intron 35.0%
CCATAACTTGACTAAACAAG+GGG + Chr7:95105938-95105957 MsG0780041783.01.T01:intron 35.0%
CGAAGATACATTAATGAGGT+TGG - Chr7:95107515-95107534 None:intergenic 35.0%
CGACCTTAATAACTTGGTTT+AGG + Chr7:95107358-95107377 MsG0780041783.01.T01:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG + Chr7:95106157-95106176 MsG0780041783.01.T01:intron 35.0%
GAGAGGAAAGAACTTATCAA+AGG + Chr7:95105306-95105325 MsG0780041783.01.T01:CDS 35.0%
GCATCAAAGTAGTAAAGTGA+AGG - Chr7:95105887-95105906 None:intergenic 35.0%
GCATGCATGTATTATGTATG+AGG + Chr7:95107218-95107237 MsG0780041783.01.T01:intron 35.0%
GTACATTTAGAAAACAGAGG+GGG - Chr7:95105546-95105565 None:intergenic 35.0%
GTGAATTGAGAGAGATTACA+GGG + Chr7:95106072-95106091 MsG0780041783.01.T01:intron 35.0%
GTTCAATGATAGAGATGAGA+CGG + Chr7:95107414-95107433 MsG0780041783.01.T01:three_prime_UTR 35.0%
GTTTAAAAATGCATCAAGGG+AGG - Chr7:95105513-95105532 None:intergenic 35.0%
GTTTGATTAAAGGGACATCA+TGG + Chr7:95107380-95107399 MsG0780041783.01.T01:intron 35.0%
TAGACACGACCTTAATAACT+TGG + Chr7:95107352-95107371 MsG0780041783.01.T01:intron 35.0%
TATTATTGCATGCTTCTTGG+TGG + Chr7:95104990-95105009 MsG0780041783.01.T01:intron 35.0%
TCAAATCCAGAAACTTACTG+AGG + Chr7:95104943-95104962 MsG0780041783.01.T01:CDS 35.0%
TCATATGTAAGTAAGTTCCC+AGG + Chr7:95106727-95106746 MsG0780041783.01.T01:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG - Chr7:95106298-95106317 None:intergenic 35.0%
TGAAACTACCACTGATAAGA+AGG - Chr7:95105173-95105192 None:intergenic 35.0%
TGAATGTTCTTCTCTTTGTG+TGG + Chr7:95106633-95106652 MsG0780041783.01.T01:CDS 35.0%
TGAATTGAGAGAGATTACAG+GGG + Chr7:95106073-95106092 MsG0780041783.01.T01:intron 35.0%
TGGCAATAACAATGCTATAG+CGG + Chr7:95106343-95106362 MsG0780041783.01.T01:intron 35.0%
TGTGAATTGAGAGAGATTAC+AGG + Chr7:95106071-95106090 MsG0780041783.01.T01:intron 35.0%
! ACTCTATATGCTGGCTATTT+GGG + Chr7:95104794-95104813 MsG0780041783.01.T01:CDS 35.0%
! AGATGAACTTATTAGTGGGT+TGG + Chr7:95105830-95105849 MsG0780041783.01.T01:intron 35.0%
! AGCTACATGATTTTGCATGT+AGG + Chr7:95107120-95107139 MsG0780041783.01.T01:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG + Chr7:95106096-95106115 MsG0780041783.01.T01:intron 35.0%
! ATTTGAAGTTCAACAGGTGA+TGG - Chr7:95104929-95104948 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG + Chr7:95105265-95105284 MsG0780041783.01.T01:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG + Chr7:95106515-95106534 MsG0780041783.01.T01:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG + Chr7:95105085-95105104 MsG0780041783.01.T01:intron 35.0%
! TACTCTATATGCTGGCTATT+TGG + Chr7:95104793-95104812 MsG0780041783.01.T01:CDS 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG + Chr7:95106097-95106116 MsG0780041783.01.T01:intron 35.0%
! TTCTGGATTTGAAGTTCAAC+AGG - Chr7:95104935-95104954 None:intergenic 35.0%
! TTGGTTGGTTACTGATATTC+AGG + Chr7:95105284-95105303 MsG0780041783.01.T01:intron 35.0%
! TTGTCCAGCTTCTTTTAGTA+AGG - Chr7:95107187-95107206 None:intergenic 35.0%
! TTTCAAGTGCTTTACCATCA+GGG - Chr7:95104898-95104917 None:intergenic 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG + Chr7:95105269-95105288 MsG0780041783.01.T01:intron 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG - Chr7:95105865-95105884 None:intergenic 35.0%
AAAACTTCAAGCCATGTGCA+CGG + Chr7:95106002-95106021 MsG0780041783.01.T01:intron 40.0%
AACAAACCACCCAACACAAT+GGG - Chr7:95104767-95104786 None:intergenic 40.0%
AAGAGGCAAGCCTTAAAACA+GGG - Chr7:95107452-95107471 None:intergenic 40.0%
AATGCTGGATCCATACTTCT+AGG + Chr7:95105351-95105370 MsG0780041783.01.T01:CDS 40.0%
AGTACAAGCCTTCTTATCAG+TGG + Chr7:95105162-95105181 MsG0780041783.01.T01:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG - Chr7:95106532-95106551 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG + Chr7:95106459-95106478 MsG0780041783.01.T01:intron 40.0%
CAATTGCCTACCAAATGACA+AGG - Chr7:95106947-95106966 None:intergenic 40.0%
CAGAGCAATGTGAAGATTTC+TGG - Chr7:95106606-95106625 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG + Chr7:95106663-95106682 MsG0780041783.01.T01:CDS 40.0%
CCATACAATATCAAGTCCAG+TGG - Chr7:95106666-95106685 None:intergenic 40.0%
CGAGTATCTCTGAACAATAG+GGG - Chr7:95106297-95106316 None:intergenic 40.0%
GACACCAAATCCTAGAAGTA+TGG - Chr7:95105364-95105383 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG + Chr7:95106081-95106100 MsG0780041783.01.T01:intron 40.0%
TACAGGCATTACCGTCTTAT+GGG + Chr7:95106532-95106551 MsG0780041783.01.T01:intron 40.0%
TATCCCAAAATTGGCAATCC+CGG - Chr7:95106403-95106422 None:intergenic 40.0%
TCATGGAATTCCTGAGTTTG+TGG + Chr7:95107661-95107680 MsG0780041783.01.T01:three_prime_UTR 40.0%
TCTAGATTAAGTACGGCCAA+TGG - Chr7:95105680-95105699 None:intergenic 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG + Chr7:95106460-95106479 MsG0780041783.01.T01:intron 40.0%
TGACACGCAATTATGTTACG+AGG - Chr7:95106824-95106843 None:intergenic 40.0%
TGAGATATAGAGTCGGAGAT+GGG - Chr7:95107276-95107295 None:intergenic 40.0%
TGCTTACCTCAGTAAGTTTC+TGG - Chr7:95104952-95104971 None:intergenic 40.0%
TGGTTACTGATATTCAGGAG+AGG + Chr7:95105289-95105308 MsG0780041783.01.T01:intron 40.0%
TTAAAGGGACATCATGGATC+CGG + Chr7:95107386-95107405 MsG0780041783.01.T01:intron 40.0%
TTCAAGTGCTTTACCATCAG+GGG - Chr7:95104897-95104916 None:intergenic 40.0%
TTGACGAACATTCTACCTGT+CGG - Chr7:95105726-95105745 None:intergenic 40.0%
TTGAGATATAGAGTCGGAGA+TGG - Chr7:95107277-95107296 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG + Chr7:95105680-95105699 MsG0780041783.01.T01:intron 40.0%
! AAGGTGTTACCTGTAAATGG+AGG - Chr7:95105572-95105591 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG - Chr7:95105941-95105960 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG + Chr7:95104795-95104814 MsG0780041783.01.T01:CDS 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG + Chr7:95106471-95106490 MsG0780041783.01.T01:intron 40.0%
! GGAGAGTTTGGGATATTTGA+AGG + Chr7:95104719-95104738 MsG0780041783.01.T01:CDS 40.0%
! GTTTCAAGTGCTTTACCATC+AGG - Chr7:95104899-95104918 None:intergenic 40.0%
! TTTTGATACTTCCGTGCACA+TGG - Chr7:95106016-95106035 None:intergenic 40.0%
!! GGATCCATACTTCTAGGATT+TGG + Chr7:95105357-95105376 MsG0780041783.01.T01:CDS 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG + Chr7:95105368-95105387 MsG0780041783.01.T01:CDS 40.0%
ACAAACCACCCAACACAATG+GGG - Chr7:95104766-95104785 None:intergenic 45.0%
AGAGGCAAGCCTTAAAACAG+GGG - Chr7:95107451-95107470 None:intergenic 45.0%
CAAGAGGCAAGCCTTAAAAC+AGG - Chr7:95107453-95107472 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG - Chr7:95106055-95106074 None:intergenic 45.0%
CATAAGACGGTAATGCCTGT+AGG - Chr7:95106533-95106552 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG + Chr7:95105444-95105463 MsG0780041783.01.T01:CDS 45.0%
CCAGGTCCACATTTATTTGC+AGG + Chr7:95105438-95105457 MsG0780041783.01.T01:CDS 45.0%
CCTGCAAATAAATGTGGACC+TGG - Chr7:95105441-95105460 None:intergenic 45.0%
CCTGCTCCTGCAAATAAATG+TGG - Chr7:95105447-95105466 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG + Chr7:95106531-95106550 MsG0780041783.01.T01:intron 45.0%
CTCAACACATGGTTAAGGAC+AGG + Chr7:95105405-95105424 MsG0780041783.01.T01:CDS 45.0%
CTCAGATGAGGTCGATGTAA+TGG + Chr7:95106205-95106224 MsG0780041783.01.T01:intron 45.0%
CTCATTCACCCCATTGTGTT+GGG + Chr7:95104755-95104774 MsG0780041783.01.T01:CDS 45.0%
CTCTATCATTGAACTCGACC+CGG - Chr7:95107408-95107427 None:intergenic 45.0%
GAAACAACTCAAACCTGCAC+CGG + Chr7:95104868-95104887 MsG0780041783.01.T01:CDS 45.0%
GAACAAACCACCCAACACAA+TGG - Chr7:95104768-95104787 None:intergenic 45.0%
GAGGACTCAACACATGGTTA+AGG + Chr7:95105400-95105419 MsG0780041783.01.T01:CDS 45.0%
GTTTCACTGCCTTTCTGCAT+CGG - Chr7:95106581-95106600 None:intergenic 45.0%
TAAAGGGACATCATGGATCC+GGG + Chr7:95107387-95107406 MsG0780041783.01.T01:intron 45.0%
TCTCATTCACCCCATTGTGT+TGG + Chr7:95104754-95104773 MsG0780041783.01.T01:CDS 45.0%
! AGGACAGGAAAGCTATTTCC+AGG + Chr7:95105420-95105439 MsG0780041783.01.T01:CDS 45.0%
! ATAGAGTCGGAGATGGGTTT+GGG - Chr7:95107270-95107289 None:intergenic 45.0%
! CTAGCACCTTGTCATTTGGT+AGG + Chr7:95106938-95106957 MsG0780041783.01.T01:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG + Chr7:95106397-95106416 MsG0780041783.01.T01:intron 45.0%
! TATAGAGTCGGAGATGGGTT+TGG - Chr7:95107271-95107290 None:intergenic 45.0%
! TATATGCTGGCTATTTGGGG+TGG + Chr7:95104798-95104817 MsG0780041783.01.T01:CDS 45.0%
! TGAAGTTCAACAGGTGATGG+CGG - Chr7:95104926-95104945 None:intergenic 45.0%
! TGATCCGGGATTGCCAATTT+TGG + Chr7:95106396-95106415 MsG0780041783.01.T01:intron 45.0%
! TGTGTGCATCCCCTGTTTTA+AGG + Chr7:95107439-95107458 MsG0780041783.01.T01:three_prime_UTR 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG + Chr7:95104708-95104727 MsG0780041783.01.T01:CDS 45.0%
!! AAACAGGATGCACTTGCTGT+TGG + Chr7:95104695-95104714 MsG0780041783.01.T01:CDS 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG - Chr7:95105712-95105731 None:intergenic 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG - Chr7:95105711-95105730 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG + Chr7:95105375-95105394 MsG0780041783.01.T01:CDS 45.0%
AATGGTGACCGTGGCACTTT+GGG - Chr7:95105662-95105681 None:intergenic 50.0%
ACTTTGGCGCACACAGAGAA+AGG - Chr7:95106039-95106058 None:intergenic 50.0%
ATTCACCCCATTGTGTTGGG+TGG + Chr7:95104758-95104777 MsG0780041783.01.T01:CDS 50.0%
CATTACCGTCTTATGGGCAC+TGG + Chr7:95106538-95106557 MsG0780041783.01.T01:CDS 50.0%
CTAGTACCACCGATGCAGAA+AGG + Chr7:95106569-95106588 MsG0780041783.01.T01:CDS 50.0%
GGTGCTAGCACCTTGTCATT+TGG + Chr7:95106934-95106953 MsG0780041783.01.T01:intron 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG + Chr7:95106039-95106058 MsG0780041783.01.T01:intron 50.0%
TTGGTGGAGGACTCAACACA+TGG + Chr7:95105394-95105413 MsG0780041783.01.T01:CDS 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG + Chr7:95106038-95106057 MsG0780041783.01.T01:intron 50.0%
TTTGTGTGGCAGATTCCCAC+TGG + Chr7:95106647-95106666 MsG0780041783.01.T01:CDS 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG + Chr7:95106100-95106119 MsG0780041783.01.T01:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG + Chr7:95106090-95106109 MsG0780041783.01.T01:intron 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG + Chr7:95105708-95105727 MsG0780041783.01.T01:intron 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG + Chr7:95104707-95104726 MsG0780041783.01.T01:CDS 50.0%
CAATGGTGACCGTGGCACTT+TGG - Chr7:95105663-95105682 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG - Chr7:95106578-95106597 None:intergenic 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG + Chr7:95106040-95106059 MsG0780041783.01.T01:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG - Chr7:95106546-95106565 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG + Chr7:95105661-95105680 MsG0780041783.01.T01:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG + Chr7:95104804-95104823 MsG0780041783.01.T01:CDS 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG + Chr7:95105651-95105670 MsG0780041783.01.T01:intron 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG + Chr7:95104698-95104717 MsG0780041783.01.T01:CDS 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG + Chr7:95105378-95105397 MsG0780041783.01.T01:CDS 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG + Chr7:95105381-95105400 MsG0780041783.01.T01:CDS 55.0%
AGTACGGCCAATGGTGACCG+TGG - Chr7:95105671-95105690 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG + Chr7:95106041-95106060 MsG0780041783.01.T01:intron 60.0%
GCTTTACCATCAGGGGCGAC+CGG - Chr7:95104890-95104909 None:intergenic 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG + Chr7:95104816-95104835 MsG0780041783.01.T01:CDS 65.0%
CCATCAGGGGCGACCGGTGC+AGG - Chr7:95104884-95104903 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG + Chr7:95104881-95104900 MsG0780041783.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 95104686 95107741 95104686 ID=MsG0780041783.01;Name=MsG0780041783.01
Chr7 mRNA 95104686 95107741 95104686 ID=MsG0780041783.01.T01;Parent=MsG0780041783.01;Name=MsG0780041783.01.T01;_AED=0.45;_eAED=0.45;_QI=0|1|0.75|1|0.66|0.5|4|367|205
Chr7 exon 95106537 95106732 95106537 ID=MsG0780041783.01.T01:exon:22723;Parent=MsG0780041783.01.T01
Chr7 exon 95107392 95107741 95107392 ID=MsG0780041783.01.T01:exon:22724;Parent=MsG0780041783.01.T01
Chr7 CDS 95104686 95104964 95104686 ID=MsG0780041783.01.T01:cds;Parent=MsG0780041783.01.T01
Chr7 CDS 95105306 95105465 95105306 ID=MsG0780041783.01.T01:cds;Parent=MsG0780041783.01.T01
Chr7 CDS 95106537 95106715 95106537 ID=MsG0780041783.01.T01:cds;Parent=MsG0780041783.01.T01
Chr7 three_prime_UTR 95106716 95106732 95106716 ID=MsG0780041783.01.T01:three_prime_utr;Parent=MsG0780041783.01.T01
Chr7 three_prime_UTR 95107392 95107741 95107392 ID=MsG0780041783.01.T01:three_prime_utr;Parent=MsG0780041783.01.T01
Chr7 mRNA 95104686 95106948 95104686 ID=MsG0780041783.01.T02;Parent=MsG0780041783.01;Name=MsG0780041783.01.T02;_AED=0.46;_eAED=0.46;_QI=0|1|0.66|1|1|1|3|233|205
Chr7 exon 95106537 95106948 95106537 ID=MsG0780041783.01.T02:exon:22725;Parent=MsG0780041783.01.T02
Chr7 CDS 95104686 95104964 95104686 ID=MsG0780041783.01.T02:cds;Parent=MsG0780041783.01.T02
Chr7 CDS 95105306 95105465 95105306 ID=MsG0780041783.01.T02:cds;Parent=MsG0780041783.01.T02
Chr7 CDS 95106537 95106715 95106537 ID=MsG0780041783.01.T02:cds;Parent=MsG0780041783.01.T02
Chr7 three_prime_UTR 95106716 95106948 95106716 ID=MsG0780041783.01.T02:three_prime_utr;Parent=MsG0780041783.01.T02
Gene Sequence

>MsG0780041783.01.T02

ATGTTGTTGAAACAGGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGAGAGGAAAGAACTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGTGGAGGACTCAACACATGGTTAAGGACAGGAAAGCTATTTCCAGGTCCACATTTATTTGCAGGAGCAGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

>MsG0780041783.01.T01

ATGTTGTTGAAACAGGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAACTTCACCGCCATCACCTGTTGAACTTCAAATCCAGAAACTTACTGAGGAGAGGAAAGAACTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGTGGAGGACTCAACACATGGTTAAGGACAGGAAAGCTATTTCCAGGTCCACATTTATTTGCAGGAGCAGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>MsG0780041783.01.T02

MLLKQDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP*

>MsG0780041783.01.T01

MLLKQDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALETSPPSPVELQIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP*