AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044811.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044811.01.T01 MTR_8g468810 72.163 467 70 5 1 411 1 463 0.0 640
MsG0880044811.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 520
MsG0880044811.01.T01 MTR_8g468810 81.875 320 54 2 1 320 1 316 0.0 519
MsG0880044811.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 518
MsG0880044811.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 516
MsG0880044811.01.T01 MTR_8g058970 54.021 485 141 6 1 411 1 477 2.03e-164 471
MsG0880044811.01.T01 MTR_2g083840 50.214 468 165 7 1 411 1 457 2.64e-141 411
MsG0880044811.01.T01 MTR_8g468760 51.044 431 165 13 12 410 2 418 2.22e-122 362
MsG0880044811.01.T01 MTR_8g468840 45.147 443 177 8 26 409 13 448 7.59e-106 320
MsG0880044811.01.T01 MTR_5g092960 44.912 452 172 12 27 410 19 461 2.25e-102 312
MsG0880044811.01.T01 MTR_4g032730 54.723 307 125 6 11 312 2 299 4.61e-95 293
MsG0880044811.01.T01 MTR_4g032730 48.837 86 38 2 326 410 386 466 1.37e-18 87.8
MsG0880044811.01.T01 MTR_8g062270 53.608 291 127 4 27 311 16 304 4.32e-89 277
MsG0880044811.01.T01 MTR_8g014160 40.723 415 228 10 6 411 20 425 4.67e-84 263
MsG0880044811.01.T01 MTR_8g014260 38.641 471 206 15 2 411 3 451 1.08e-82 261
MsG0880044811.01.T01 MTR_8g058965 37.500 472 214 11 12 416 4 461 6.09e-81 256
MsG0880044811.01.T01 MTR_8g467800 40.000 470 200 13 5 411 3 453 7.09e-79 251
MsG0880044811.01.T01 MTR_5g092960 48.658 298 137 7 27 311 19 313 2.36e-78 248
MsG0880044811.01.T01 MTR_8g467800 50.962 312 135 8 5 311 3 301 2.41e-76 241
MsG0880044811.01.T01 MTR_8g077460 41.103 399 203 14 20 411 2 375 1.20e-71 230
MsG0880044811.01.T01 MTR_8g445780 38.983 413 176 11 1 361 1 389 1.63e-71 230
MsG0880044811.01.T01 MTR_8g070950 36.534 479 199 19 1 415 1 438 1.32e-66 219
MsG0880044811.01.T01 MTR_8g062010 36.526 449 208 13 20 411 2 430 1.87e-66 218
MsG0880044811.01.T01 MTR_4g050250 37.383 428 179 12 2 353 4 418 1.09e-64 213
MsG0880044811.01.T01 MTR_8g062080 35.307 456 211 14 22 416 18 450 1.13e-64 214
MsG0880044811.01.T01 MTR_8g469020 44.086 279 131 10 27 286 7 279 2.74e-57 195
MsG0880044811.01.T01 MTR_8g469020 46.067 89 44 2 329 415 369 455 3.31e-16 80.5
MsG0880044811.01.T01 MTR_8g467790 36.364 363 182 15 27 355 148 495 2.33e-50 177
MsG0880044811.01.T01 MTR_5g021550 52.023 173 67 6 1 168 1 162 3.16e-43 149
MsG0880044811.01.T01 MTR_8g062310 39.286 280 135 10 27 303 25 272 6.50e-41 150
MsG0880044811.01.T01 MTR_8g062310 45.882 85 42 2 329 411 346 428 1.54e-15 78.6
MsG0880044811.01.T01 MTR_2g086020 34.140 372 183 14 53 415 1 319 8.23e-41 147
MsG0880044811.01.T01 MTR_4g024710 34.459 296 135 8 169 411 58 347 2.24e-35 134
MsG0880044811.01.T01 MTR_8g062300 35.890 326 161 12 3 305 5 305 2.71e-35 136
MsG0880044811.01.T01 MTR_8g062300 37.931 116 68 2 296 411 366 477 8.86e-15 76.3
MsG0880044811.01.T01 MTR_8g014290 44.720 161 77 6 19 169 2 160 1.31e-33 123
MsG0880044811.01.T01 MTR_4g024720 40.212 189 79 8 1 168 1 176 1.80e-30 117
MsG0880044811.01.T01 MTR_4g024745 33.948 271 127 7 167 386 10 279 1.62e-28 113
MsG0880044811.01.T01 MTR_8g014210 34.746 236 99 5 226 411 1 231 5.34e-28 110
MsG0880044811.01.T01 MTR_3g107120 29.736 417 235 14 20 408 2 388 2.51e-26 109
MsG0880044811.01.T01 MTR_8g014220 35.484 217 76 7 2 213 3 160 8.48e-25 100
MsG0880044811.01.T01 MTR_5g008920 29.280 403 243 17 24 411 6 381 2.29e-24 103
MsG0880044811.01.T01 MTR_3g107100 27.913 412 258 14 23 413 7 400 1.70e-23 102
MsG0880044811.01.T01 MTR_1g041245 35.204 196 109 5 27 218 11 192 7.09e-23 99.8
MsG0880044811.01.T01 MTR_3g036250 27.778 396 235 13 27 408 5 363 1.48e-22 98.6
MsG0880044811.01.T01 MTR_5g008950 26.076 395 250 13 29 411 1 365 1.58e-21 95.9
MsG0880044811.01.T01 MTR_7g098510 27.569 399 258 11 23 411 14 391 2.18e-21 95.5
MsG0880044811.01.T01 MTR_7g114710 28.000 400 225 15 27 411 13 364 2.91e-21 94.7
MsG0880044811.01.T01 MTR_3g107160 25.622 402 270 8 19 411 2 383 3.01e-21 95.1
MsG0880044811.01.T01 MTR_3g023630 27.390 387 251 15 24 404 5 367 3.57e-21 94.7
MsG0880044811.01.T01 MTR_4g113810 35.119 168 102 5 109 271 1 166 5.91e-20 87.0
MsG0880044811.01.T01 MTR_7g056447 35.784 204 103 10 20 215 2 185 9.96e-20 89.4
MsG0880044811.01.T01 MTR_3g108150 26.969 419 236 16 22 410 8 386 1.04e-19 90.5
MsG0880044811.01.T01 MTR_4g056040 31.563 339 171 14 22 317 4 324 1.10e-19 91.3
MsG0880044811.01.T01 MTR_7g033915 27.338 417 217 15 22 410 6 364 1.76e-19 89.7
MsG0880044811.01.T01 MTR_7g032380 35.714 196 108 7 27 218 11 192 2.62e-19 89.0
MsG0880044811.01.T01 MTR_7g056433 26.225 408 268 13 17 411 2 389 3.07e-19 89.4
MsG0880044811.01.T01 MTR_4g056030 30.199 351 207 13 22 358 4 330 4.16e-19 89.4
MsG0880044811.01.T01 MTR_3g105060 25.505 396 248 14 27 411 14 373 6.10e-19 88.2
MsG0880044811.01.T01 MTR_6g022500 28.261 368 233 13 21 376 95 443 8.57e-19 88.6
MsG0880044811.01.T01 MTR_7g033990 27.553 421 215 16 22 403 6 375 8.76e-19 88.2
MsG0880044811.01.T01 MTR_7g098570 26.817 399 245 15 27 407 20 389 9.13e-19 88.6
MsG0880044811.01.T01 MTR_2g008320 27.685 419 240 17 20 411 45 427 1.25e-18 87.8
MsG0880044811.01.T01 MTR_7g115270 25.768 423 240 16 26 408 11 399 2.18e-18 86.7
MsG0880044811.01.T01 MTR_3g071850 26.173 405 258 15 20 403 17 401 2.85e-18 87.8
MsG0880044811.01.T01 MTR_4g056020 31.803 305 177 13 22 313 4 290 4.91e-18 86.3
MsG0880044811.01.T01 MTR_5g080710 26.773 437 237 16 27 403 33 446 9.31e-18 85.5
MsG0880044811.01.T01 MTR_3g040700 26.216 370 240 10 7 368 22 366 9.85e-18 85.1
MsG0880044811.01.T01 MTR_5g058100 27.451 408 251 15 21 410 3 383 1.82e-17 84.0
MsG0880044811.01.T01 MTR_7g026500 24.554 448 246 14 1 410 1 394 2.95e-17 83.6
MsG0880044811.01.T01 MTR_4g056070 29.915 351 171 15 22 317 4 334 4.34e-17 83.2
MsG0880044811.01.T01 MTR_2g008310 26.716 408 238 16 27 411 2 371 5.06e-17 82.8
MsG0880044811.01.T01 MTR_1g085120 25.768 423 241 17 23 411 163 546 6.11e-17 83.2
MsG0880044811.01.T01 MTR_1g085120 25.768 423 241 17 23 411 88 471 6.19e-17 82.8
MsG0880044811.01.T01 MTR_4g055990 28.994 338 180 12 22 313 4 327 1.91e-16 81.6
MsG0880044811.01.T01 MTR_4g055990 28.994 338 180 12 22 313 4 327 2.43e-16 81.3
MsG0880044811.01.T01 MTR_8g085430 33.333 210 109 7 23 218 7 199 3.13e-16 79.7
MsG0880044811.01.T01 MTR_2g007400 26.316 418 259 16 22 411 7 403 3.31e-16 80.5
MsG0880044811.01.T01 MTR_7g098480 26.582 395 263 9 23 410 14 388 5.98e-16 80.1
MsG0880044811.01.T01 MTR_3g467400 27.561 410 227 18 27 411 3 367 7.62e-16 79.0
MsG0880044811.01.T01 MTR_7g056420 25.120 418 221 13 20 405 2 359 1.61e-15 79.3
MsG0880044811.01.T01 MTR_4g055580 29.971 347 174 16 17 313 90 417 1.69e-15 79.0
MsG0880044811.01.T01 MTR_7g056430 25.120 418 221 13 20 405 2 359 1.85e-15 79.3
MsG0880044811.01.T01 MTR_3g082890 26.619 417 245 14 27 411 97 484 2.05e-15 78.2
MsG0880044811.01.T01 MTR_8g014230 52.000 75 32 2 327 401 25 95 2.30e-15 72.0
MsG0880044811.01.T01 MTR_7g088260 24.939 409 258 14 21 411 85 462 2.45e-15 78.2
MsG0880044811.01.T01 MTR_5g084070 25.404 433 241 15 27 403 13 419 2.58e-15 77.8
MsG0880044811.01.T01 MTR_2g007500 32.850 207 108 6 20 220 7 188 2.75e-15 77.0
MsG0880044811.01.T01 MTR_1089s0010 25.481 416 235 18 27 411 8 379 3.49e-15 77.0
MsG0880044811.01.T01 MTR_4g093690 34.010 197 107 8 27 215 18 199 1.11e-14 74.3
MsG0880044811.01.T01 MTR_7g056277 24.173 393 265 12 27 410 259 627 1.24e-14 76.3
MsG0880044811.01.T01 MTR_5g073420 26.355 406 244 18 27 412 11 381 3.30e-14 73.9
MsG0880044811.01.T01 MTR_7g034110 26.629 353 187 16 21 362 5 296 3.78e-14 73.6
MsG0880044811.01.T01 MTR_6g011460 25.968 439 246 16 7 411 28 421 3.97e-14 73.9
MsG0880044811.01.T01 MTR_7g034115 26.722 363 235 12 27 378 11 353 4.94e-14 73.6
MsG0880044811.01.T01 MTR_4g024770 49.315 73 25 2 2 74 10 70 8.71e-14 66.6
MsG0880044811.01.T01 MTR_1g053025 24.688 401 267 14 27 408 2 386 9.14e-14 72.8
MsG0880044811.01.T01 MTR_5g083890 26.963 382 236 13 26 376 5 374 1.65e-13 72.4
MsG0880044811.01.T01 MTR_1g038710 28.053 303 187 10 27 313 19 306 2.51e-13 71.6
MsG0880044811.01.T01 MTR_5g058000 27.696 408 230 17 27 410 8 374 2.60e-13 71.2
MsG0880044811.01.T01 MTR_7g056287 24.557 395 261 14 27 410 3 371 4.96e-13 70.5
MsG0880044811.01.T01 MTR_7g032370 33.880 183 104 7 39 218 2 170 5.40e-13 70.1
MsG0880044811.01.T01 MTR_1g107385 28.009 432 230 19 21 408 26 420 3.35e-12 68.2
MsG0880044811.01.T01 MTR_1g066830 25.971 412 244 18 27 410 8 386 6.10e-12 67.0
MsG0880044811.01.T01 MTR_7g055943 26.794 418 245 19 23 411 36 421 8.97e-12 67.0
MsG0880044811.01.T01 MTR_6g044560 25.114 438 261 17 7 411 161 564 1.08e-11 67.0
MsG0880044811.01.T01 MTR_1g108820 26.214 412 238 20 27 408 8 383 1.25e-11 66.2
MsG0880044811.01.T01 MTR_6g044572 24.515 412 259 15 27 411 2 388 2.45e-11 65.5
MsG0880044811.01.T01 MTR_1g090900 33.143 175 105 4 20 194 4 166 5.37e-11 62.0
MsG0880044811.01.T01 MTR_3g048290 28.349 321 180 15 18 311 14 311 6.05e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044811.01.T01 AT4G26340 28.217 443 235 16 27 411 2 419 2.56e-29 118
MsG0880044811.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044811.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044811.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044811.01.T01 AT5G56370 27.009 448 234 18 27 410 2 420 2.04e-26 110
MsG0880044811.01.T01 AT5G56370 27.009 448 234 18 27 410 2 420 2.04e-26 110
MsG0880044811.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044811.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044811.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044811.01.T01 AT1G78760 25.983 458 236 20 24 408 13 440 3.89e-25 107
MsG0880044811.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044811.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044811.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044811.01.T01 AT5G56440 26.281 449 245 16 27 410 2 429 3.46e-24 104
MsG0880044811.01.T01 AT1G78750 25.862 464 265 15 11 408 5 455 4.02e-24 104
MsG0880044811.01.T01 AT1G78750 25.862 464 265 15 11 408 5 455 4.02e-24 104
MsG0880044811.01.T01 AT4G00160 28.635 447 241 18 26 411 15 444 6.11e-24 103
MsG0880044811.01.T01 AT5G38590 27.000 400 224 13 27 376 2 383 6.38e-24 103
MsG0880044811.01.T01 AT1G55660 26.211 454 250 15 27 410 53 491 1.12e-22 100
MsG0880044811.01.T01 AT5G38590 29.352 293 176 12 27 311 2 271 2.27e-22 96.7
MsG0880044811.01.T01 AT3G50710 25.901 444 252 16 27 411 2 427 4.70e-22 97.8
MsG0880044811.01.T01 AT3G52680 28.475 446 241 20 26 411 20 447 5.04e-22 98.2
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 1.68e-21 94.7
MsG0880044811.01.T01 AT1G06630 30.380 316 193 11 26 328 11 312 4.12e-21 94.4
MsG0880044811.01.T01 AT1G06630 30.380 316 193 11 26 328 11 312 4.12e-21 94.4
MsG0880044811.01.T01 AT4G14096 29.180 305 191 10 26 317 7 299 4.56e-21 95.5
MsG0880044811.01.T01 AT4G14096 29.180 305 191 10 26 317 7 299 4.56e-21 95.5
MsG0880044811.01.T01 AT1G32375 25.113 442 253 15 27 411 2 422 4.96e-21 95.1
MsG0880044811.01.T01 AT1G32375 25.113 442 253 15 27 411 2 422 4.96e-21 95.1
MsG0880044811.01.T01 AT1G80470 27.451 306 193 13 24 317 12 300 5.22e-21 95.1
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.31e-21 95.1
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044811.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044811.01.T01 AT1G06630 30.380 316 193 11 26 328 20 321 7.62e-21 94.4
MsG0880044811.01.T01 AT1G66310 27.468 466 235 21 14 408 6 439 1.63e-20 93.6
MsG0880044811.01.T01 AT1G55660 27.703 296 195 9 27 311 53 340 1.94e-20 92.4
MsG0880044811.01.T01 AT5G53840 30.651 261 162 9 17 274 8 252 2.28e-20 93.2
MsG0880044811.01.T01 AT5G22730 26.205 477 253 21 7 408 11 463 2.47e-20 93.2
MsG0880044811.01.T01 AT5G22730 26.205 477 253 21 7 408 11 463 2.47e-20 93.2
MsG0880044811.01.T01 AT5G56370 29.693 293 174 12 27 313 2 268 3.93e-20 90.9
MsG0880044811.01.T01 AT4G14103 29.206 315 187 11 25 317 6 306 5.66e-20 91.3
MsG0880044811.01.T01 AT4G14103 29.206 315 187 11 25 317 6 306 5.66e-20 91.3
MsG0880044811.01.T01 AT4G14103 29.299 314 186 11 26 317 7 306 6.43e-20 91.7
MsG0880044811.01.T01 AT5G60610 24.466 421 213 16 27 377 2 387 1.39e-19 90.5
MsG0880044811.01.T01 AT5G60610 24.466 421 213 16 27 377 2 387 1.39e-19 90.5
MsG0880044811.01.T01 AT4G00315 25.167 449 261 14 27 410 2 440 1.44e-19 90.9
MsG0880044811.01.T01 AT2G04230 26.555 418 223 13 25 377 11 409 4.18e-19 89.4
MsG0880044811.01.T01 AT3G58940 24.943 437 237 16 27 394 2 416 6.42e-19 89.4
MsG0880044811.01.T01 AT3G58940 24.943 437 237 16 27 394 2 416 6.42e-19 89.4
MsG0880044811.01.T01 AT5G38570 23.678 435 224 13 27 412 2 377 1.29e-18 87.4
MsG0880044811.01.T01 AT4G15060 28.818 347 199 17 27 346 172 497 1.34e-18 88.2
MsG0880044811.01.T01 AT2G26860 26.540 422 213 18 27 377 2 397 3.59e-18 86.3
MsG0880044811.01.T01 AT2G26860 26.540 422 213 18 27 377 2 397 3.59e-18 86.3
MsG0880044811.01.T01 AT4G09920 28.483 323 195 16 27 339 2 298 3.60e-18 85.1
MsG0880044811.01.T01 AT4G09920 28.483 323 195 16 27 339 2 298 3.60e-18 85.1
MsG0880044811.01.T01 AT1G69630 26.991 452 239 19 27 408 18 448 4.65e-18 86.3
MsG0880044811.01.T01 AT3G49030 25.714 420 258 17 26 413 20 417 5.21e-18 85.9
MsG0880044811.01.T01 AT4G15060 28.395 324 192 15 27 331 26 328 5.30e-18 85.9
MsG0880044811.01.T01 AT5G56380 25.771 454 252 18 27 411 2 439 7.48e-18 85.5
MsG0880044811.01.T01 AT5G56380 25.771 454 252 18 27 411 2 439 7.48e-18 85.5
MsG0880044811.01.T01 AT5G56810 27.293 458 248 21 14 410 2 435 1.14e-17 85.1
MsG0880044811.01.T01 AT5G22670 35.178 253 135 12 24 264 8 243 1.48e-17 84.7
MsG0880044811.01.T01 AT3G59200 28.520 277 175 12 26 291 6 270 2.11e-17 83.6
MsG0880044811.01.T01 AT3G59200 28.417 278 176 12 25 291 5 270 3.56e-17 84.0
MsG0880044811.01.T01 AT1G05080 25.056 443 258 13 26 410 12 438 5.99e-17 82.8
MsG0880044811.01.T01 AT5G41840 27.217 327 192 13 27 314 14 333 9.04e-17 82.8
MsG0880044811.01.T01 AT4G13985 27.103 321 213 9 12 317 4 318 1.12e-16 82.0
MsG0880044811.01.T01 AT5G56400 23.884 448 257 16 25 411 31 455 2.29e-16 81.3
MsG0880044811.01.T01 AT4G22280 31.228 285 167 11 27 301 2 267 2.39e-16 80.1
MsG0880044811.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044811.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044811.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044811.01.T01 AT4G22280 31.228 285 167 11 27 301 2 267 3.17e-16 80.5
MsG0880044811.01.T01 AT3G52680 30.943 265 159 11 10 265 4 253 5.66e-16 79.3
MsG0880044811.01.T01 AT1G51370 26.009 446 236 21 26 408 18 432 5.70e-16 79.7
MsG0880044811.01.T01 AT3G10750 25.397 315 197 12 55 366 2 281 5.88e-16 78.6
MsG0880044811.01.T01 AT2G26030 25.108 462 243 20 25 408 2 438 8.14e-16 79.3
MsG0880044811.01.T01 AT2G26030 25.108 462 243 20 25 408 2 438 8.14e-16 79.3
MsG0880044811.01.T01 AT5G53640 28.372 215 128 8 8 217 3 196 1.41e-15 75.9
MsG0880044811.01.T01 AT1G13780 26.464 427 225 18 27 377 10 423 2.18e-15 78.2
MsG0880044811.01.T01 AT5G56410 25.698 358 209 16 27 356 2 330 4.27e-15 77.4
MsG0880044811.01.T01 AT3G49030 24.324 444 260 18 26 413 20 443 5.53e-15 77.0
MsG0880044811.01.T01 AT2G26030 28.797 316 180 16 25 314 2 298 5.98e-15 76.6
MsG0880044811.01.T01 AT3G26922 30.063 316 170 15 25 317 12 299 6.17e-15 75.5
MsG0880044811.01.T01 AT3G26922 30.063 316 170 15 25 317 12 299 6.17e-15 75.5
MsG0880044811.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044811.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044811.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044811.01.T01 AT5G56560 22.247 445 257 14 26 411 4 418 7.60e-15 76.3
MsG0880044811.01.T01 AT5G44950 27.294 425 215 23 26 377 3 406 9.52e-15 76.3
MsG0880044811.01.T01 AT5G56690 27.536 276 173 14 29 291 4 265 1.21e-14 75.5
MsG0880044811.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 2.16e-14 74.7
MsG0880044811.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 2.16e-14 74.7
MsG0880044811.01.T01 AT3G44810 30.769 247 145 8 29 260 9 244 3.58e-14 74.3
MsG0880044811.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 4.04e-14 74.3
MsG0880044811.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 4.04e-14 74.3
MsG0880044811.01.T01 AT5G53635 23.831 449 250 16 29 410 2 425 6.47e-14 73.6
MsG0880044811.01.T01 AT3G59190 28.740 254 156 11 25 264 10 252 8.29e-14 73.6
MsG0880044811.01.T01 AT1G13780 29.644 253 150 10 27 262 10 251 1.16e-13 72.0
MsG0880044811.01.T01 AT3G59190 28.740 254 156 11 25 264 10 252 1.30e-13 72.4
MsG0880044811.01.T01 AT4G10420 22.388 335 192 11 129 410 2 321 1.80e-13 71.2
MsG0880044811.01.T01 AT3G58860 28.676 272 176 11 27 291 7 267 1.81e-13 72.4
MsG0880044811.01.T01 AT4G13965 25.115 434 254 17 25 408 8 420 3.18e-13 71.2
MsG0880044811.01.T01 AT5G38590 27.753 227 143 8 93 313 27 238 3.66e-13 69.7
MsG0880044811.01.T01 AT4G00320 26.374 273 168 9 23 269 9 274 4.23e-13 71.2
MsG0880044811.01.T01 AT5G41830 27.972 286 175 9 26 286 12 291 5.70e-13 70.9
MsG0880044811.01.T01 AT3G44060 27.922 308 184 13 29 318 1 288 7.87e-13 70.1
MsG0880044811.01.T01 AT3G59170 29.856 278 153 10 25 265 5 277 1.13e-12 69.7
MsG0880044811.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044811.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044811.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044811.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044811.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044811.01.T01 AT5G56390 26.774 310 194 9 27 323 2 291 1.60e-12 69.3
MsG0880044811.01.T01 AT5G56700 29.148 223 138 10 66 282 2 210 1.83e-12 67.8
MsG0880044811.01.T01 AT5G22660 26.293 464 247 20 17 408 3 443 1.92e-12 68.9
MsG0880044811.01.T01 AT3G56780 27.113 284 172 10 162 416 201 478 2.35e-12 68.9
MsG0880044811.01.T01 AT2G29930 26.984 315 181 14 26 317 11 299 3.65e-12 68.2
MsG0880044811.01.T01 AT2G29930 26.984 315 181 14 26 317 11 299 3.65e-12 68.2
MsG0880044811.01.T01 AT5G35995 28.571 308 189 14 25 317 3 294 4.51e-12 67.8
MsG0880044811.01.T01 AT5G35995 28.571 308 189 14 25 317 3 294 4.51e-12 67.8
MsG0880044811.01.T01 AT1G60410 27.626 257 150 11 24 264 7 243 5.83e-12 67.4
MsG0880044811.01.T01 AT5G38390 31.621 253 139 11 27 269 2 230 1.94e-11 65.9
MsG0880044811.01.T01 AT5G18770 25.460 326 203 11 9 317 14 316 2.01e-11 65.5
MsG0880044811.01.T01 AT1G58310 28.231 294 172 12 25 291 6 287 2.14e-11 65.9
MsG0880044811.01.T01 AT1G56610 30.112 269 151 13 20 268 3 254 2.65e-11 65.5
MsG0880044811.01.T01 AT5G18770 25.460 326 203 11 9 317 14 316 3.25e-11 65.5
MsG0880044811.01.T01 AT4G26350 31.818 198 116 8 27 220 2 184 3.55e-11 65.1
MsG0880044811.01.T01 AT5G56810 28.213 319 181 15 14 305 2 299 3.84e-11 64.3
MsG0880044811.01.T01 AT3G49040 26.599 297 185 12 25 311 15 288 4.77e-11 63.9
MsG0880044811.01.T01 AT1G56610 30.112 269 151 13 20 268 66 317 6.61e-11 64.7
MsG0880044811.01.T01 AT3G59160 26.837 313 181 12 16 291 3 304 8.49e-11 63.9

Find 112 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTACAAAATGACCATTTA+TGG 0.085766 8:+49490144 None:intergenic
CTGTCCAATCTTAGAAATTT+TGG 0.135666 8:-49488624 MsG0880044811.01.T01:CDS
TTGACCTATATTCACTTTAA+AGG 0.147428 8:-49487866 MsG0880044811.01.T01:CDS
TTGAAGACAATGCTTATTTC+TGG 0.178189 8:-49487782 MsG0880044811.01.T01:CDS
GTTAAATTTGACCAAGTTCT+AGG 0.208686 8:-49487671 MsG0880044811.01.T01:CDS
TCGAAAATTGTCTGAGAAAA+TGG 0.210666 8:+49487723 None:intergenic
CTTGCAGGAGAGTGGGTAAA+AGG 0.305542 8:+49488366 None:intergenic
AGTTCCAAAATTTCTAAGAT+TGG 0.318329 8:+49488620 None:intergenic
CGGTGAGATCTTTGTGGAAT+TGG 0.324937 8:-49488741 MsG0880044811.01.T01:CDS
CTGAATTAGCGCAGTTTATG+AGG 0.356769 8:-49490092 MsG0880044811.01.T01:five_prime_UTR
AAGTGGGATACAAGACAATT+AGG 0.370823 8:+49487887 None:intergenic
AGAGGAGGTTAGTGCATGAT+AGG 0.377152 8:+49489497 None:intergenic
ATTCACTTTAAAGGATATAC+AGG 0.383467 8:-49487857 MsG0880044811.01.T01:CDS
CCGAATCTTTGGCCAAGCTT+AGG 0.388638 8:-49488586 MsG0880044811.01.T01:CDS
GGCAGAGAGAAGGATATTAA+TGG 0.390004 8:+49488646 None:intergenic
AGTGGTGTCCAATCCATAAA+TGG 0.392317 8:-49490157 MsG0880044811.01.T01:five_prime_UTR
CGAATCTTTGGCCAAGCTTA+GGG 0.393635 8:-49488585 MsG0880044811.01.T01:CDS
TACGAAGGACCCGCGACATT+CGG 0.394870 8:-49489675 MsG0880044811.01.T01:CDS
TTAAATCTCTTCAAGGAAGA+TGG 0.395265 8:+49488560 None:intergenic
AGCAAAGTCTTTGAAATGTT+CGG 0.401003 8:+49489723 None:intergenic
ACTCTCCTGCAAGCTCTCTC+TGG 0.415568 8:-49488356 MsG0880044811.01.T01:CDS
CGAAGTTATCAAGTTGAGAT+TGG 0.421124 8:+49489632 None:intergenic
TGGGAAGGAAGGAAAGTATA+TGG 0.423492 8:+49489860 None:intergenic
CAATGAGCCTTGTTTCTCAT+AGG 0.428492 8:-49489819 MsG0880044811.01.T01:CDS
CAAAATGACCATTTATGGAT+TGG 0.430315 8:+49490149 None:intergenic
CTCATAGGTATCTTCATCTC+TGG 0.436906 8:-49489804 MsG0880044811.01.T01:CDS
GGCATCGCCAAGTGTGATAT+CGG 0.438417 8:+49488466 None:intergenic
CCTAAGCTTGGCCAAAGATT+CGG 0.439078 8:+49488586 None:intergenic
AGTAAATTTAAATCTCTTCA+AGG 0.440949 8:+49488553 None:intergenic
GGCCAAAGATTCGGTTGAAA+AGG 0.442677 8:+49488595 None:intergenic
CGTGGATCCGCACTGCCGTT+GGG 0.447263 8:-49489591 MsG0880044811.01.T01:CDS
GATACATCACCACATCAATA+TGG 0.457893 8:-49487935 MsG0880044811.01.T01:CDS
TAATTCCAGAGAGAGCTTGC+AGG 0.458090 8:+49488351 None:intergenic
TAATCAGGTGGCGTTTAGCC+TGG 0.458165 8:+49490223 None:intergenic
GATTATTAATATGAGTAATC+AGG 0.463009 8:+49490208 None:intergenic
CTCTTCTCGTCTGAGGATCA+AGG 0.463320 8:-49489541 MsG0880044811.01.T01:CDS
CAAAATTTCTAAGATTGGAC+AGG 0.469145 8:+49488625 None:intergenic
CAAGTTAATTACCTAGAACT+TGG 0.469252 8:+49487660 None:intergenic
CATACATAATATAGAGAAAG+AGG 0.470469 8:-49490025 MsG0880044811.01.T01:five_prime_UTR
CATCGTAGAAATCAAAAGCT+TGG 0.471473 8:+49489773 None:intergenic
AGAGATTTAAATTTACTGTA+GGG 0.479221 8:-49488547 MsG0880044811.01.T01:CDS
ACTCCCACCTGTCCTGGAAA+AGG 0.479801 8:-49490279 None:intergenic
TTCGGCCTCGCCATCGACGC+CGG 0.481816 8:+49489741 None:intergenic
AAGAGATTTAAATTTACTGT+AGG 0.482663 8:-49488548 MsG0880044811.01.T01:CDS
TACAGGATGTTCGCGTGAGA+TGG 0.495639 8:-49487840 MsG0880044811.01.T01:CDS
GTGTGATATCGGCGAGGCTA+AGG 0.496306 8:+49488477 None:intergenic
TCTCTACGGTGAGATCTTTG+TGG 0.502442 8:-49488747 MsG0880044811.01.T01:CDS
ATATCCTTTAAAGTGAATAT+AGG 0.507843 8:+49487862 None:intergenic
ATCCTCAAGGTGGGGCCCAA+CGG 0.507882 8:+49489576 None:intergenic
GAACTTGGTCAAATTTAACT+TGG 0.510908 8:+49487675 None:intergenic
ACGTGGATCCGCACTGCCGT+TGG 0.511251 8:-49489592 MsG0880044811.01.T01:CDS
CCAGGAGAAGAAGAAAATGA+TGG 0.521742 8:-49489946 MsG0880044811.01.T01:CDS
CTTGAGGAAGATTACCTTGG+TGG 0.522119 8:+49490178 None:intergenic
AGTTGTAATCTCTTCAATGA+TGG 0.525654 8:+49488695 None:intergenic
TCGGCCTCGCCATCGACGCC+GGG 0.525835 8:+49489742 None:intergenic
TTCTACGATGAGTACTCTCC+CGG 0.531961 8:-49489760 MsG0880044811.01.T01:CDS
CAGGTGGCGTTTAGCCTGGA+AGG 0.532433 8:+49490227 None:intergenic
GTGCAAGTCCCCAACAAAAG+TGG 0.536088 8:+49488445 None:intergenic
TGCCGTTGGGCCCCACCTTG+AGG 0.539334 8:-49489578 MsG0880044811.01.T01:CDS
CTCTCCCGGCGTCGATGGCG+AGG 0.539871 8:-49489746 MsG0880044811.01.T01:CDS
AGAGAGAGCTTGCAGGAGAG+TGG 0.545504 8:+49488358 None:intergenic
GAGTACTCTCCCGGCGTCGA+TGG 0.545589 8:-49489751 MsG0880044811.01.T01:CDS
TAAAGTGAATATAGGTCAAG+TGG 0.551062 8:+49487870 None:intergenic
ACGCATCTTCCGAATGTCGC+GGG 0.555891 8:+49489666 None:intergenic
GAGAGAGCTTGCAGGAGAGT+GGG 0.567276 8:+49488359 None:intergenic
TCTCGCTCTCTTCTCGTCTG+AGG 0.568024 8:-49489548 MsG0880044811.01.T01:CDS
TGTGGAATTGGAACAATCGT+CGG 0.568307 8:-49488729 MsG0880044811.01.T01:CDS
AGATTGGACAGGCAGAGAGA+AGG 0.579911 8:+49488636 None:intergenic
TGTAATGTACACAGTCTCTA+CGG 0.579931 8:-49488761 MsG0880044811.01.T01:intron
GGAAGATGGAACCCTAAGCT+TGG 0.579963 8:+49488574 None:intergenic
GTTTAGTTGTAATTCAGCAA+TGG 0.580635 8:-49488318 MsG0880044811.01.T01:intron
GAGGTTAGTGCATGATAGGA+TGG 0.583085 8:+49489501 None:intergenic
CAGGAGAAGAAGAAAATGAT+GGG 0.586707 8:-49489945 MsG0880044811.01.T01:CDS
TGAATTAGCGCAGTTTATGA+GGG 0.591926 8:-49490091 MsG0880044811.01.T01:five_prime_UTR
AGTTCAAAACGAAGAAAACC+AGG 0.596394 8:-49489964 MsG0880044811.01.T01:CDS
CCAAGGTAATCTTCCTCAAG+TGG 0.597323 8:-49490175 MsG0880044811.01.T01:five_prime_UTR
CTGAACGCTCTGTTGACACG+TGG 0.601980 8:-49489609 MsG0880044811.01.T01:CDS
CCACTTGAGGAAGATTACCT+TGG 0.604339 8:+49490175 None:intergenic
GAGATGAAGATCCTCAAGGT+GGG 0.607880 8:+49489567 None:intergenic
AAGAGATTACAACTAGACAT+TGG 0.609472 8:-49488686 MsG0880044811.01.T01:CDS
CGGAAGATGCGTCTCTCTTG+CGG 0.610368 8:-49489655 MsG0880044811.01.T01:CDS
TGGCAGACAGTAGATCCCCT+TGG 0.612624 8:+49487695 None:intergenic
GAAGAAGAAAATGATGGGCA+AGG 0.612809 8:-49489940 MsG0880044811.01.T01:CDS
ACCACATCAATATGGTCTCA+CGG 0.613811 8:-49487927 MsG0880044811.01.T01:CDS
TATGGATTGGACACCACTTG+AGG 0.618995 8:+49490162 None:intergenic
AGCCTCGCCGATATCACACT+TGG 0.620507 8:-49488473 MsG0880044811.01.T01:CDS
ACAACTAGACATTGGTAATG+TGG 0.620834 8:-49488678 MsG0880044811.01.T01:CDS
GCGCTAATTCAGATTTAGAG+TGG 0.621492 8:+49490103 None:intergenic
AGGCTAAGGTACTTAAGACC+AGG 0.629957 8:+49488491 None:intergenic
AGATGAAGATCCTCAAGGTG+GGG 0.631714 8:+49489568 None:intergenic
ACAGTTACCTCATGGAGAGG+AGG 0.634577 8:+49489482 None:intergenic
AAAGTGAATATAGGTCAAGT+GGG 0.636598 8:+49487871 None:intergenic
GACGCATCTTCCGAATGTCG+CGG 0.638940 8:+49489665 None:intergenic
AAAACAGTTACCTCATGGAG+AGG 0.640625 8:+49489479 None:intergenic
AGGTGGCGTTTAGCCTGGAA+GGG 0.642916 8:+49490228 None:intergenic
ACGGCTTTCTCTCTTTACGA+AGG 0.645259 8:-49489690 MsG0880044811.01.T01:CDS
AATAATCAGCACAGCCACCA+AGG 0.645745 8:-49490192 MsG0880044811.01.T01:five_prime_UTR
CGAGATGAAGATCCTCAAGG+TGG 0.647298 8:+49489566 None:intergenic
GAGCGAGATGAAGATCCTCA+AGG 0.648810 8:+49489563 None:intergenic
TGCATGATAGGATGGCGAGA+GGG 0.650254 8:+49489509 None:intergenic
TGTTGGGGACTTGCACAGCG+TGG 0.651349 8:-49488438 MsG0880044811.01.T01:CDS
AAAAGGACACTTTCCCATGG+TGG 0.656865 8:-49490262 MsG0880044811.01.T01:five_prime_UTR
TGGAAAAGGACACTTTCCCA+TGG 0.656938 8:-49490265 MsG0880044811.01.T01:five_prime_UTR
TATTAATATGAGTAATCAGG+TGG 0.661252 8:+49490211 None:intergenic
TGGGGACTTGCACAGCGTGG+AGG 0.667537 8:-49488435 MsG0880044811.01.T01:CDS
GCCGTGAGACCATATTGATG+TGG 0.673861 8:+49487926 None:intergenic
GGTGGGGCCCAACGGCAGTG+CGG 0.675625 8:+49489584 None:intergenic
TGTCTTGAGATAGACACACC+TGG 0.677521 8:-49488509 MsG0880044811.01.T01:CDS
GTGCATGATAGGATGGCGAG+AGG 0.679069 8:+49489508 None:intergenic
CGCCAAGTGTGATATCGGCG+AGG 0.680205 8:+49488471 None:intergenic
GAAGATACCTATGAGAAACA+AGG 0.685034 8:+49489812 None:intergenic
GCACTAACCTCCTCTCCATG+AGG 0.685181 8:-49489489 MsG0880044811.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAACTACTAAATATATAA+TGG + Chr8:49489678-49489697 None:intergenic 15.0%
!! TAACAAATAAACATTGAAAA+TGG + Chr8:49488517-49488536 None:intergenic 15.0%
!!! AATGTTTTTTTAGAAAGTTT+AGG + Chr8:49488784-49488803 None:intergenic 15.0%
!!! ATTTTCGAAAAATCTATAAT+AGG + Chr8:49489767-49489786 None:intergenic 15.0%
!!! TTTAACTTAAGTTTTATTGT+GGG - Chr8:49489925-49489944 MsG0880044811.01.T01:CDS 15.0%
!!! TTTTTATTCTAAAATTGTAC+TGG - Chr8:49489029-49489048 MsG0880044811.01.T01:intron 15.0%
!! AAGAGATTTAAATTTACTGT+AGG - Chr8:49489385-49489404 MsG0880044811.01.T01:intron 20.0%
!! AATGGAATATATAATACACA+TGG + Chr8:49489660-49489679 None:intergenic 20.0%
!! AGAGATTTAAATTTACTGTA+GGG - Chr8:49489386-49489405 MsG0880044811.01.T01:intron 20.0%
!! AGTAAATTTAAATCTCTTCA+AGG + Chr8:49489383-49489402 None:intergenic 20.0%
!! GAAAATCTAAAAATCTACAA+TGG - Chr8:49487941-49487960 MsG0880044811.01.T01:intron 20.0%
!! GATTATTAATATGAGTAATC+AGG + Chr8:49487728-49487747 None:intergenic 20.0%
!! TTGTCATATCTTTCATTAAT+TGG + Chr8:49488923-49488942 None:intergenic 20.0%
!!! ATATCCTTTAAAGTGAATAT+AGG + Chr8:49490074-49490093 None:intergenic 20.0%
!!! GTTTAACTTAAGTTTTATTG+TGG - Chr8:49489924-49489943 MsG0880044811.01.T01:CDS 20.0%
!!! TAGATTTTTAGATTTTCTCT+TGG + Chr8:49487938-49487957 None:intergenic 20.0%
!!! TTTATTTGTTACAGAGAAAT+AGG - Chr8:49488526-49488545 MsG0880044811.01.T01:CDS 20.0%
!!! TTTTTCGAAAATGTACTTTT+CGG - Chr8:49489775-49489794 MsG0880044811.01.T01:CDS 20.0%
! AATCTAAAAATCTACAATGG+AGG - Chr8:49487944-49487963 MsG0880044811.01.T01:intron 25.0%
! CATACATAATATAGAGAAAG+AGG - Chr8:49487908-49487927 MsG0880044811.01.T01:CDS 25.0%
! TATTAATATGAGTAATCAGG+TGG + Chr8:49487725-49487744 None:intergenic 25.0%
! TTGACCTATATTCACTTTAA+AGG - Chr8:49490067-49490086 MsG0880044811.01.T01:five_prime_UTR 25.0%
! TTTCATATTTGAGTCATAAC+AGG - Chr8:49488476-49488495 MsG0880044811.01.T01:CDS 25.0%
!! AAATGTACTTTTCGGAATTT+CGG - Chr8:49489783-49489802 MsG0880044811.01.T01:CDS 25.0%
!! ATTCACTTTAAAGGATATAC+AGG - Chr8:49490076-49490095 MsG0880044811.01.T01:five_prime_UTR 25.0%
!!! AGTTCCAAAATTTCTAAGAT+TGG + Chr8:49489316-49489335 None:intergenic 25.0%
AAAATAACTCGAGGAAAACT+AGG - Chr8:49488825-49488844 MsG0880044811.01.T01:intron 30.0%
AAAGTGAATATAGGTCAAGT+GGG + Chr8:49490065-49490084 None:intergenic 30.0%
AAGAGATTACAACTAGACAT+TGG - Chr8:49489247-49489266 MsG0880044811.01.T01:intron 30.0%
ACGTACCAAAAGAGATTATT+AGG - Chr8:49489734-49489753 MsG0880044811.01.T01:CDS 30.0%
AGTTGTAATCTCTTCAATGA+TGG + Chr8:49489241-49489260 None:intergenic 30.0%
ATGAAAAAACAGTTACCTCA+TGG + Chr8:49488462-49488481 None:intergenic 30.0%
CAAAATGACCATTTATGGAT+TGG + Chr8:49487787-49487806 None:intergenic 30.0%
GAACTTGGTCAAATTTAACT+TGG + Chr8:49490261-49490280 None:intergenic 30.0%
GTGGTGTTTGTTTGATTATT+TGG - Chr8:49489951-49489970 MsG0880044811.01.T01:CDS 30.0%
GTTAAATTTGACCAAGTTCT+AGG - Chr8:49490262-49490281 MsG0880044811.01.T01:five_prime_UTR 30.0%
GTTTAGTTGTAATTCAGCAA+TGG - Chr8:49489615-49489634 MsG0880044811.01.T01:CDS 30.0%
TAAAGTGAATATAGGTCAAG+TGG + Chr8:49490066-49490085 None:intergenic 30.0%
TACAGAGAAATAGGTACAAT+GGG - Chr8:49488535-49488554 MsG0880044811.01.T01:CDS 30.0%
TCGAAAATTGTCTGAGAAAA+TGG + Chr8:49490213-49490232 None:intergenic 30.0%
TGATCTGTATGTACATTAGT+TGG - Chr8:49488706-49488725 MsG0880044811.01.T01:CDS 30.0%
TGTTATCTGAAAATAACTCG+AGG - Chr8:49488816-49488835 MsG0880044811.01.T01:intron 30.0%
TTAAATCTCTTCAAGGAAGA+TGG + Chr8:49489376-49489395 None:intergenic 30.0%
TTACAGAGAAATAGGTACAA+TGG - Chr8:49488534-49488553 MsG0880044811.01.T01:CDS 30.0%
TTAGAAAGTTTAGGTGAGTT+GGG + Chr8:49488775-49488794 None:intergenic 30.0%
TTAGACATTCACTTGCAAAA+TGG - Chr8:49489005-49489024 MsG0880044811.01.T01:intron 30.0%
TTGAAGACAATGCTTATTTC+TGG - Chr8:49490151-49490170 MsG0880044811.01.T01:five_prime_UTR 30.0%
TTTAGAAAGTTTAGGTGAGT+TGG + Chr8:49488776-49488795 None:intergenic 30.0%
! ACAATTTTCGAATATGCCAA+GGG - Chr8:49490222-49490241 MsG0880044811.01.T01:five_prime_UTR 30.0%
! AGACAATTAGGAACACTTTT+CGG + Chr8:49490037-49490056 None:intergenic 30.0%
! CTGTCCAATCTTAGAAATTT+TGG - Chr8:49489309-49489328 MsG0880044811.01.T01:intron 30.0%
! GACTACCTAATAATCTCTTT+TGG + Chr8:49489742-49489761 None:intergenic 30.0%
! GCTAGTTATGTTTTGCATTA+TGG - Chr8:49490121-49490140 MsG0880044811.01.T01:five_prime_UTR 30.0%
!! AGCAAAGTCTTTGAAATGTT+CGG + Chr8:49488213-49488232 None:intergenic 30.0%
!! CAAAATTTCTAAGATTGGAC+AGG + Chr8:49489311-49489330 None:intergenic 30.0%
!! TCCATAAATGGTCATTTTGT+AGG - Chr8:49487788-49487807 MsG0880044811.01.T01:CDS 30.0%
!!! GCTTATTTCTGGTTTTTTGT+CGG - Chr8:49490162-49490181 MsG0880044811.01.T01:five_prime_UTR 30.0%
AAGTGGGATACAAGACAATT+AGG + Chr8:49490049-49490068 None:intergenic 35.0%
AGATATGACAAAACTCGCTA+AGG - Chr8:49488932-49488951 MsG0880044811.01.T01:intron 35.0%
AGTTCAAAACGAAGAAAACC+AGG - Chr8:49487969-49487988 MsG0880044811.01.T01:intron 35.0%
ATCAACTTCCACTATTGATG+TGG - Chr8:49488667-49488686 MsG0880044811.01.T01:CDS 35.0%
ATCACCAATTACTACTCCAT+CGG + Chr8:49488853-49488872 None:intergenic 35.0%
ATTATGAGAGCTTGAAGCAT+AGG + Chr8:49489878-49489897 None:intergenic 35.0%
CAGGAGAAGAAGAAAATGAT+GGG - Chr8:49487988-49488007 MsG0880044811.01.T01:intron 35.0%
CATCGTAGAAATCAAAAGCT+TGG + Chr8:49488163-49488182 None:intergenic 35.0%
GAAGATACCTATGAGAAACA+AGG + Chr8:49488124-49488143 None:intergenic 35.0%
GATACATCACCACATCAATA+TGG - Chr8:49489998-49490017 MsG0880044811.01.T01:five_prime_UTR 35.0%
GCCTACAAAATGACCATTTA+TGG + Chr8:49487792-49487811 None:intergenic 35.0%
TCAACTTCCACTATTGATGT+GGG - Chr8:49488668-49488687 MsG0880044811.01.T01:CDS 35.0%
TCTCATAATTCAGAATGCGA+AGG - Chr8:49489889-49489908 MsG0880044811.01.T01:CDS 35.0%
TGAATTAGCGCAGTTTATGA+GGG - Chr8:49487842-49487861 MsG0880044811.01.T01:CDS 35.0%
TGTAATGTACACAGTCTCTA+CGG - Chr8:49489172-49489191 MsG0880044811.01.T01:intron 35.0%
! ACAATGAAAGTTGACTCAGT+TGG - Chr8:49488613-49488632 MsG0880044811.01.T01:CDS 35.0%
! CAATTTTCGAATATGCCAAG+GGG - Chr8:49490223-49490242 MsG0880044811.01.T01:five_prime_UTR 35.0%
! GACAATTTTCGAATATGCCA+AGG - Chr8:49490221-49490240 MsG0880044811.01.T01:five_prime_UTR 35.0%
! TTCCTTTTCAACCGAATCTT+TGG - Chr8:49489336-49489355 MsG0880044811.01.T01:intron 35.0%
!! ACAACTAGACATTGGTAATG+TGG - Chr8:49489255-49489274 MsG0880044811.01.T01:intron 35.0%
!! CGAAGTTATCAAGTTGAGAT+TGG + Chr8:49488304-49488323 None:intergenic 35.0%
!!! GACTTTGCTATTTTCGTCAA+CGG - Chr8:49488224-49488243 MsG0880044811.01.T01:intron 35.0%
!!! GTACACACAGTTGTTTTTGT+GGG + Chr8:49488095-49488114 None:intergenic 35.0%
!!! TAAGTTTTATTGTGGGTGTG+TGG - Chr8:49489932-49489951 MsG0880044811.01.T01:CDS 35.0%
!!! TGTACACACAGTTGTTTTTG+TGG + Chr8:49488096-49488115 None:intergenic 35.0%
AAAACAGTTACCTCATGGAG+AGG + Chr8:49488457-49488476 None:intergenic 40.0%
ACCACATCAATATGGTCTCA+CGG - Chr8:49490006-49490025 MsG0880044811.01.T01:five_prime_UTR 40.0%
ACGTACACAACAACAACAAG+TGG + Chr8:49489718-49489737 None:intergenic 40.0%
AGAGATTCCCACATCAATAG+TGG + Chr8:49488678-49488697 None:intergenic 40.0%
AGTGGTGTCCAATCCATAAA+TGG - Chr8:49487776-49487795 MsG0880044811.01.T01:CDS 40.0%
CAACAACAAGTGGAGATACA+AGG + Chr8:49489708-49489727 None:intergenic 40.0%
CCAGGAGAAGAAGAAAATGA+TGG - Chr8:49487987-49488006 MsG0880044811.01.T01:intron 40.0%
CTCATAGGTATCTTCATCTC+TGG - Chr8:49488129-49488148 MsG0880044811.01.T01:intron 40.0%
CTGAATTAGCGCAGTTTATG+AGG - Chr8:49487841-49487860 MsG0880044811.01.T01:CDS 40.0%
GATGTATCCTGCAGAAAACA+AGG + Chr8:49489986-49490005 None:intergenic 40.0%
GCGCTAATTCAGATTTAGAG+TGG + Chr8:49487833-49487852 None:intergenic 40.0%
GGCAGAGAGAAGGATATTAA+TGG + Chr8:49489290-49489309 None:intergenic 40.0%
TACAGAAAAGGGTCGAAAGT+AGG + Chr8:49489836-49489855 None:intergenic 40.0%
TGATGTGGGAATCTCTTTGT+TGG - Chr8:49488682-49488701 MsG0880044811.01.T01:CDS 40.0%
TGTGGAATTGGAACAATCGT+CGG - Chr8:49489204-49489223 MsG0880044811.01.T01:intron 40.0%
! AAGTTGATCTCATGACCTTG+CGG + Chr8:49488655-49488674 None:intergenic 40.0%
! CCATCATTTTCTTCTTCTCC+TGG + Chr8:49487990-49488009 None:intergenic 40.0%
! TGGGAAGGAAGGAAAGTATA+TGG + Chr8:49488076-49488095 None:intergenic 40.0%
!! CAATGAGCCTTGTTTCTCAT+AGG - Chr8:49488114-49488133 MsG0880044811.01.T01:intron 40.0%
!! GAAGAAGAAAATGATGGGCA+AGG - Chr8:49487993-49488012 MsG0880044811.01.T01:intron 40.0%
!!! ACACAGTTGTTTTTGTGGGA+AGG + Chr8:49488091-49488110 None:intergenic 40.0%
!!! AGTTGTACCTTGTTTTCTGC+AGG - Chr8:49489976-49489995 MsG0880044811.01.T01:CDS 40.0%
!!! AGTTGTTTTTGTGGGAAGGA+AGG + Chr8:49488087-49488106 None:intergenic 40.0%
!!! GGACAGTTTTTTTCCACCAT+GGG + Chr8:49487687-49487706 None:intergenic 40.0%
AAAAGGACACTTTCCCATGG+TGG - Chr8:49487671-49487690 MsG0880044811.01.T01:CDS 45.0%
AATAATCAGCACAGCCACCA+AGG - Chr8:49487741-49487760 MsG0880044811.01.T01:CDS 45.0%
ACATTAGTTGGCACTCACAG+AGG - Chr8:49488718-49488737 MsG0880044811.01.T01:CDS 45.0%
ACGGCTTTCTCTCTTTACGA+AGG - Chr8:49488243-49488262 MsG0880044811.01.T01:intron 45.0%
AGAGGAGGTTAGTGCATGAT+AGG + Chr8:49488439-49488458 None:intergenic 45.0%
AGATGAAGATCCTCAAGGTG+GGG + Chr8:49488368-49488387 None:intergenic 45.0%
AGTTGATCTCATGACCTTGC+GGG + Chr8:49488654-49488673 None:intergenic 45.0%
CATTAGTTGGCACTCACAGA+GGG - Chr8:49488719-49488738 MsG0880044811.01.T01:CDS 45.0%
CCAAGGTAATCTTCCTCAAG+TGG - Chr8:49487758-49487777 MsG0880044811.01.T01:CDS 45.0%
CCACTTGAGGAAGATTACCT+TGG + Chr8:49487761-49487780 None:intergenic 45.0%
CCTAAGCTTGGCCAAAGATT+CGG + Chr8:49489350-49489369 None:intergenic 45.0%
CGAATCTTTGGCCAAGCTTA+GGG - Chr8:49489348-49489367 MsG0880044811.01.T01:intron 45.0%
CGGTGAGATCTTTGTGGAAT+TGG - Chr8:49489192-49489211 MsG0880044811.01.T01:intron 45.0%
CTTGAGGAAGATTACCTTGG+TGG + Chr8:49487758-49487777 None:intergenic 45.0%
GAAGCACGTCGTACAGAAAA+GGG + Chr8:49489847-49489866 None:intergenic 45.0%
GAGATGAAGATCCTCAAGGT+GGG + Chr8:49488369-49488388 None:intergenic 45.0%
GAGGTTAGTGCATGATAGGA+TGG + Chr8:49488435-49488454 None:intergenic 45.0%
GGAAAAAAACTGTCCCTTCC+AGG - Chr8:49487692-49487711 MsG0880044811.01.T01:CDS 45.0%
GGATCCGATGGAGTAGTAAT+TGG - Chr8:49488846-49488865 MsG0880044811.01.T01:intron 45.0%
TAATTCCAGAGAGAGCTTGC+AGG + Chr8:49489585-49489604 None:intergenic 45.0%
TCTCTACGGTGAGATCTTTG+TGG - Chr8:49489186-49489205 MsG0880044811.01.T01:intron 45.0%
TGAAGCACGTCGTACAGAAA+AGG + Chr8:49489848-49489867 None:intergenic 45.0%
TGGAAAAGGACACTTTCCCA+TGG - Chr8:49487668-49487687 MsG0880044811.01.T01:CDS 45.0%
TGTCTTGAGATAGACACACC+TGG - Chr8:49489424-49489443 MsG0880044811.01.T01:intron 45.0%
TTCTACGATGAGTACTCTCC+CGG - Chr8:49488173-49488192 MsG0880044811.01.T01:intron 45.0%
! AGGCTAAGGTACTTAAGACC+AGG + Chr8:49489445-49489464 None:intergenic 45.0%
! GGCCAAAGATTCGGTTGAAA+AGG + Chr8:49489341-49489360 None:intergenic 45.0%
!! TATGGATTGGACACCACTTG+AGG + Chr8:49487774-49487793 None:intergenic 45.0%
!!! ATGGGAAAGTGTCCTTTTCC+AGG + Chr8:49487669-49487688 None:intergenic 45.0%
!!! GGGACAGTTTTTTTCCACCA+TGG + Chr8:49487688-49487707 None:intergenic 45.0%
!!! TTGGCGATGCCACTTTTGTT+GGG - Chr8:49489479-49489498 MsG0880044811.01.T01:intron 45.0%
ACAGTTACCTCATGGAGAGG+AGG + Chr8:49488454-49488473 None:intergenic 50.0%
AGATTGGACAGGCAGAGAGA+AGG + Chr8:49489300-49489319 None:intergenic 50.0%
CCGAATCTTTGGCCAAGCTT+AGG - Chr8:49489347-49489366 MsG0880044811.01.T01:intron 50.0%
CGAGATGAAGATCCTCAAGG+TGG + Chr8:49488370-49488389 None:intergenic 50.0%
CGAGGAAAACTAGGATCCGA+TGG - Chr8:49488834-49488853 MsG0880044811.01.T01:intron 50.0%
CTCTTCTCGTCTGAGGATCA+AGG - Chr8:49488392-49488411 MsG0880044811.01.T01:CDS 50.0%
CTTGCAGGAGAGTGGGTAAA+AGG + Chr8:49489570-49489589 None:intergenic 50.0%
GAGCGAGATGAAGATCCTCA+AGG + Chr8:49488373-49488392 None:intergenic 50.0%
GCCGTGAGACCATATTGATG+TGG + Chr8:49490010-49490029 None:intergenic 50.0%
GGAAGATGGAACCCTAAGCT+TGG + Chr8:49489362-49489381 None:intergenic 50.0%
GGCATCGCCAAGTGTGATAT+CGG + Chr8:49489470-49489489 None:intergenic 50.0%
GTGCAAGTCCCCAACAAAAG+TGG + Chr8:49489491-49489510 None:intergenic 50.0%
TAATCAGGTGGCGTTTAGCC+TGG + Chr8:49487713-49487732 None:intergenic 50.0%
TACAGGATGTTCGCGTGAGA+TGG - Chr8:49490093-49490112 MsG0880044811.01.T01:five_prime_UTR 50.0%
TGCATGATAGGATGGCGAGA+GGG + Chr8:49488427-49488446 None:intergenic 50.0%
! AAGTAGTTGACTCACCCGCA+AGG - Chr8:49488637-49488656 MsG0880044811.01.T01:CDS 50.0%
!!! CTTGGCGATGCCACTTTTGT+TGG - Chr8:49489478-49489497 MsG0880044811.01.T01:intron 50.0%
!!! TGGCGATGCCACTTTTGTTG+GGG - Chr8:49489480-49489499 MsG0880044811.01.T01:intron 50.0%
ACGCATCTTCCGAATGTCGC+GGG + Chr8:49488270-49488289 None:intergenic 55.0%
ACTCTCCTGCAAGCTCTCTC+TGG - Chr8:49489577-49489596 MsG0880044811.01.T01:CDS 55.0%
AGAGAGAGCTTGCAGGAGAG+TGG + Chr8:49489578-49489597 None:intergenic 55.0%
AGCCTCGCCGATATCACACT+TGG - Chr8:49489460-49489479 MsG0880044811.01.T01:intron 55.0%
AGGTGGCGTTTAGCCTGGAA+GGG + Chr8:49487708-49487727 None:intergenic 55.0%
CGGAAGATGCGTCTCTCTTG+CGG - Chr8:49488278-49488297 MsG0880044811.01.T01:intron 55.0%
CTGAACGCTCTGTTGACACG+TGG - Chr8:49488324-49488343 MsG0880044811.01.T01:CDS 55.0%
GACGCATCTTCCGAATGTCG+CGG + Chr8:49488271-49488290 None:intergenic 55.0%
GAGAGAGCTTGCAGGAGAGT+GGG + Chr8:49489577-49489596 None:intergenic 55.0%
GCACTAACCTCCTCTCCATG+AGG - Chr8:49488444-49488463 MsG0880044811.01.T01:CDS 55.0%
GTGCATGATAGGATGGCGAG+AGG + Chr8:49488428-49488447 None:intergenic 55.0%
GTGTGATATCGGCGAGGCTA+AGG + Chr8:49489459-49489478 None:intergenic 55.0%
TACGAAGGACCCGCGACATT+CGG - Chr8:49488258-49488277 MsG0880044811.01.T01:intron 55.0%
TCTCGCTCTCTTCTCGTCTG+AGG - Chr8:49488385-49488404 MsG0880044811.01.T01:CDS 55.0%
TGGCAGACAGTAGATCCCCT+TGG + Chr8:49490241-49490260 None:intergenic 55.0%
! GTTTAGGTGAGTTGGGCTCC+AGG + Chr8:49488768-49488787 None:intergenic 55.0%
ATCCTCAAGGTGGGGCCCAA+CGG + Chr8:49488360-49488379 None:intergenic 60.0%
CAGGTGGCGTTTAGCCTGGA+AGG + Chr8:49487709-49487728 None:intergenic 60.0%
CGCCAAGTGTGATATCGGCG+AGG + Chr8:49489465-49489484 None:intergenic 60.0%
TGTTGGGGACTTGCACAGCG+TGG - Chr8:49489495-49489514 MsG0880044811.01.T01:CDS 60.0%
ACGTGGATCCGCACTGCCGT+TGG - Chr8:49488341-49488360 MsG0880044811.01.T01:CDS 65.0%
CGTGGATCCGCACTGCCGTT+GGG - Chr8:49488342-49488361 MsG0880044811.01.T01:CDS 65.0%
GAGGGACATGCCTTGTCGCG+CGG - Chr8:49488737-49488756 MsG0880044811.01.T01:CDS 65.0%
TGGGGACTTGCACAGCGTGG+AGG - Chr8:49489498-49489517 MsG0880044811.01.T01:CDS 65.0%
! GAGTACTCTCCCGGCGTCGA+TGG - Chr8:49488182-49488201 MsG0880044811.01.T01:intron 65.0%
CCAGGAGCTACCGCGCGACA+AGG + Chr8:49488750-49488769 None:intergenic 70.0%
CCTTGTCGCGCGGTAGCTCC+TGG - Chr8:49488747-49488766 MsG0880044811.01.T01:CDS 70.0%
TGCCGTTGGGCCCCACCTTG+AGG - Chr8:49488355-49488374 MsG0880044811.01.T01:CDS 70.0%
TTCGGCCTCGCCATCGACGC+CGG + Chr8:49488195-49488214 None:intergenic 70.0%
GGTGGGGCCCAACGGCAGTG+CGG + Chr8:49488352-49488371 None:intergenic 75.0%
TCGGCCTCGCCATCGACGCC+GGG + Chr8:49488194-49488213 None:intergenic 75.0%
!! CTCTCCCGGCGTCGATGGCG+AGG - Chr8:49488187-49488206 MsG0880044811.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 49487664 49490291 49487664 ID=MsG0880044811.01;Name=MsG0880044811.01
Chr8 mRNA 49487664 49490291 49487664 ID=MsG0880044811.01.T01;Parent=MsG0880044811.01;Name=MsG0880044811.01.T01;_AED=0.49;_eAED=0.49;_QI=296|0.5|0.66|1|1|1|3|0|416
Chr8 exon 49487664 49487957 49487664 ID=MsG0880044811.01.T01:exon:20667;Parent=MsG0880044811.01.T01
Chr8 exon 49488319 49488769 49488319 ID=MsG0880044811.01.T01:exon:20666;Parent=MsG0880044811.01.T01
Chr8 exon 49489490 49490291 49489490 ID=MsG0880044811.01.T01:exon:20665;Parent=MsG0880044811.01.T01
Chr8 five_prime_UTR 49489996 49490291 49489996 ID=MsG0880044811.01.T01:five_prime_utr;Parent=MsG0880044811.01.T01
Chr8 CDS 49489490 49489995 49489490 ID=MsG0880044811.01.T01:cds;Parent=MsG0880044811.01.T01
Chr8 CDS 49488319 49488769 49488319 ID=MsG0880044811.01.T01:cds;Parent=MsG0880044811.01.T01
Chr8 CDS 49487664 49487957 49487664 ID=MsG0880044811.01.T01:cds;Parent=MsG0880044811.01.T01
Gene Sequence

>MsG0880044811.01.T01

ATGGAGGAAAGTTCAAAACGAAGAAAACCAGGAGAAGAAGAAAATGATGGGCAAGGCAGTAACAGTAACAGTAACAAAGACAGATTAAGCAGTCTGTCAGACTCTCTCTTGTGCCATATACTTTCCTTCCTTCCCACAAAAACAACTGTGTGTACAATGAGCCTTGTTTCTCATAGGTATCTTCATCTCTGGAAATATCTCCAAGCTTTTGATTTCTACGATGAGTACTCTCCCGGCGTCGATGGCGAGGCCGAACATTTCAAAGACTTTGCTATTTTCGTCAACGGCTTTCTCTCTTTACGAAGGACCCGCGACATTCGGAAGATGCGTCTCTCTTGCGGCCAATCTCAACTTGATAACTTCGCTGAACGCTCTGTTGACACGTGGATCCGCACTGCCGTTGGGCCCCACCTTGAGGATCTTCATCTCGCTCTCTTCTCGTCTGAGGATCAAGGCTTCAAACTCCCTCTCGCCATCCTATCATGCACTAACCTCCTCTCCATGAGTCTCTACGGTGAGATCTTTGTGGAATTGGAACAATCGTCGGCTGTTTGTTTACCATCATTGAAGAGATTACAACTAGACATTGGTAATGTGGATGTGAATGCCATTAATATCCTTCTCTCTGCCTGTCCAATCTTAGAAATTTTGGAACTTTCCTTTTCAACCGAATCTTTGGCCAAGCTTAGGGTTCCATCTTCCTTGAAGAGATTTAAATTTACTGTAGGGAATGACATTGAAGTTTGTCTTGAGATAGACACACCTGGTCTTAAGTACCTTAGCCTCGCCGATATCACACTTGGCGATGCCACTTTTGTTGGGGACTTGCACAGCGTGGAGGAAGCATATCTTGATTTAGAGTGCTCTTCTGAAAGTGATTCTGTTGACCTTTTACCCACTCTCCTGCAAGCTCTCTCTGGAATTAAACGTCTAGTGTTTAGTTGTAATTCAGCAATGGATACATCACCACATCAATATGGTCTCACGGCAAAGCCGAAAAGTGTTCCTAATTGTCTTGTATCCCACTTGACCTATATTCACTTTAAAGGATATACAGGATGTTCGCGTGAGATGGAATTTGCTAGTTATGTTTTGCATTATGGACTTGTTTTGAAGACAATGCTTATTTCTGGTTTTTTGTCGGATGAAAGCAAGAAGTCGACAAAGTACCATTTTCTCAGACAATTTTCGAATATGCCAAGGGGATCTACTGTCTGCCAAGTTAAATTTGACCAAGTTCTAGGTAATTAA

Protein sequence

>MsG0880044811.01.T01

MEESSKRRKPGEEENDGQGSNSNSNKDRLSSLSDSLLCHILSFLPTKTTVCTMSLVSHRYLHLWKYLQAFDFYDEYSPGVDGEAEHFKDFAIFVNGFLSLRRTRDIRKMRLSCGQSQLDNFAERSVDTWIRTAVGPHLEDLHLALFSSEDQGFKLPLAILSCTNLLSMSLYGEIFVELEQSSAVCLPSLKRLQLDIGNVDVNAINILLSACPILEILELSFSTESLAKLRVPSSLKRFKFTVGNDIEVCLEIDTPGLKYLSLADITLGDATFVGDLHSVEEAYLDLECSSESDSVDLLPTLLQALSGIKRLVFSCNSAMDTSPHQYGLTAKPKSVPNCLVSHLTYIHFKGYTGCSREMEFASYVLHYGLVLKTMLISGFLSDESKKSTKYHFLRQFSNMPRGSTVCQVKFDQVLGN*