Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019490.01.T01 | RHN59536.1 | 76.341 | 317 | 69 | 2 | 1 | 316 | 1 | 312 | 4.39E-168 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019490.01.T01 | Q9FNI8 | 26.97 | 330 | 167 | 12 | 19 | 313 | 173 | 463 | 3.60E-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019490.01.T01 | A0A396I1P4 | 76.341 | 317 | 69 | 2 | 1 | 316 | 1 | 312 | 2.10e-168 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019490.01.T01 | MTR_4g032730 | 75.394 | 317 | 72 | 2 | 1 | 316 | 156 | 467 | 1.34e-167 | 474 |
| MsG0480019490.01.T01 | MTR_8g062270 | 52.548 | 314 | 128 | 5 | 3 | 315 | 160 | 453 | 1.63e-92 | 282 |
| MsG0480019490.01.T01 | MTR_8g467800 | 50.473 | 317 | 130 | 6 | 7 | 316 | 157 | 453 | 1.37e-88 | 272 |
| MsG0480019490.01.T01 | MTR_8g468840 | 51.111 | 315 | 133 | 4 | 3 | 316 | 156 | 450 | 1.19e-87 | 270 |
| MsG0480019490.01.T01 | MTR_5g092960 | 52.648 | 321 | 126 | 3 | 3 | 316 | 161 | 462 | 1.45e-86 | 267 |
| MsG0480019490.01.T01 | MTR_8g058970 | 48.485 | 330 | 129 | 9 | 1 | 316 | 175 | 477 | 1.87e-80 | 252 |
| MsG0480019490.01.T01 | MTR_8g468810 | 47.561 | 328 | 132 | 8 | 1 | 316 | 164 | 463 | 1.89e-79 | 249 |
| MsG0480019490.01.T01 | MTR_2g083840 | 47.962 | 319 | 137 | 6 | 3 | 316 | 163 | 457 | 1.13e-73 | 234 |
| MsG0480019490.01.T01 | MTR_8g468760 | 50.158 | 317 | 102 | 9 | 3 | 315 | 154 | 418 | 2.63e-70 | 224 |
| MsG0480019490.01.T01 | MTR_8g468810 | 54.067 | 209 | 84 | 5 | 1 | 202 | 164 | 367 | 3.64e-57 | 189 |
| MsG0480019490.01.T01 | MTR_8g014260 | 39.683 | 315 | 161 | 7 | 5 | 316 | 163 | 451 | 3.35e-55 | 186 |
| MsG0480019490.01.T01 | MTR_4g024710 | 38.801 | 317 | 163 | 8 | 4 | 316 | 58 | 347 | 3.88e-53 | 177 |
| MsG0480019490.01.T01 | MTR_5g092960 | 54.854 | 206 | 86 | 1 | 3 | 201 | 161 | 366 | 3.21e-50 | 171 |
| MsG0480019490.01.T01 | MTR_8g469020 | 35.258 | 329 | 173 | 8 | 3 | 316 | 148 | 451 | 6.17e-48 | 167 |
| MsG0480019490.01.T01 | MTR_8g445780 | 40.370 | 270 | 131 | 7 | 3 | 270 | 148 | 389 | 6.23e-45 | 157 |
| MsG0480019490.01.T01 | MTR_4g024745 | 38.144 | 291 | 152 | 7 | 4 | 292 | 12 | 276 | 8.18e-45 | 154 |
| MsG0480019490.01.T01 | MTR_8g014210 | 40.081 | 247 | 121 | 6 | 72 | 316 | 10 | 231 | 8.56e-45 | 152 |
| MsG0480019490.01.T01 | MTR_8g468810 | 57.516 | 153 | 61 | 3 | 1 | 153 | 164 | 312 | 7.29e-43 | 150 |
| MsG0480019490.01.T01 | MTR_8g468810 | 57.516 | 153 | 61 | 3 | 1 | 153 | 164 | 312 | 8.61e-43 | 150 |
| MsG0480019490.01.T01 | MTR_8g468810 | 57.516 | 153 | 61 | 3 | 1 | 153 | 164 | 312 | 1.09e-42 | 150 |
| MsG0480019490.01.T01 | MTR_8g058965 | 35.135 | 333 | 167 | 8 | 3 | 316 | 154 | 456 | 3.18e-41 | 149 |
| MsG0480019490.01.T01 | MTR_8g467800 | 55.405 | 148 | 61 | 3 | 7 | 150 | 157 | 303 | 1.59e-35 | 131 |
| MsG0480019490.01.T01 | MTR_8g070950 | 31.034 | 319 | 166 | 9 | 11 | 316 | 157 | 434 | 7.98e-30 | 118 |
| MsG0480019490.01.T01 | MTR_8g062310 | 31.329 | 316 | 174 | 8 | 3 | 316 | 154 | 428 | 1.40e-28 | 114 |
| MsG0480019490.01.T01 | MTR_8g062080 | 31.269 | 323 | 173 | 8 | 3 | 316 | 163 | 445 | 2.24e-28 | 114 |
| MsG0480019490.01.T01 | MTR_4g050250 | 35.125 | 279 | 136 | 8 | 3 | 262 | 166 | 418 | 4.75e-28 | 112 |
| MsG0480019490.01.T01 | MTR_8g062010 | 30.519 | 308 | 181 | 6 | 11 | 316 | 154 | 430 | 6.14e-28 | 112 |
| MsG0480019490.01.T01 | MTR_8g062300 | 29.940 | 334 | 177 | 10 | 4 | 316 | 180 | 477 | 2.04e-26 | 108 |
| MsG0480019490.01.T01 | MTR_8g077460 | 37.888 | 161 | 74 | 4 | 158 | 316 | 239 | 375 | 2.05e-23 | 99.4 |
| MsG0480019490.01.T01 | MTR_2g086020 | 36.306 | 157 | 76 | 2 | 162 | 316 | 181 | 315 | 8.29e-19 | 85.5 |
| MsG0480019490.01.T01 | MTR_5g084070 | 29.553 | 291 | 168 | 10 | 25 | 308 | 159 | 419 | 1.69e-18 | 85.9 |
| MsG0480019490.01.T01 | MTR_5g080710 | 31.228 | 285 | 158 | 11 | 32 | 308 | 192 | 446 | 2.10e-18 | 85.9 |
| MsG0480019490.01.T01 | MTR_8g014230 | 55.172 | 58 | 25 | 1 | 231 | 288 | 20 | 76 | 1.25e-13 | 66.6 |
| MsG0480019490.01.T01 | MTR_4g056040 | 29.605 | 304 | 164 | 16 | 3 | 285 | 167 | 441 | 1.57e-13 | 71.2 |
| MsG0480019490.01.T01 | MTR_8g014160 | 48.000 | 75 | 38 | 1 | 243 | 316 | 351 | 425 | 2.17e-13 | 70.9 |
| MsG0480019490.01.T01 | MTR_1089s0010 | 27.344 | 256 | 124 | 8 | 90 | 315 | 155 | 378 | 2.36e-12 | 67.4 |
| MsG0480019490.01.T01 | MTR_4g056020 | 29.667 | 300 | 157 | 18 | 1 | 277 | 135 | 403 | 8.02e-12 | 66.2 |
| MsG0480019490.01.T01 | MTR_7g026500 | 27.885 | 208 | 117 | 6 | 116 | 315 | 212 | 394 | 2.52e-11 | 64.3 |
| MsG0480019490.01.T01 | MTR_3g087260 | 28.161 | 348 | 168 | 13 | 19 | 315 | 140 | 456 | 2.79e-11 | 64.3 |
| MsG0480019490.01.T01 | MTR_7g034120 | 27.490 | 251 | 131 | 10 | 87 | 315 | 86 | 307 | 3.32e-11 | 63.5 |
| MsG0480019490.01.T01 | MTR_5g008950 | 25.475 | 263 | 155 | 9 | 72 | 316 | 126 | 365 | 3.56e-11 | 63.9 |
| MsG0480019490.01.T01 | MTR_5g039950 | 27.368 | 285 | 152 | 9 | 10 | 286 | 151 | 388 | 6.88e-11 | 63.2 |
| MsG0480019490.01.T01 | MTR_6g040270 | 26.255 | 259 | 123 | 9 | 89 | 313 | 154 | 378 | 7.08e-11 | 62.8 |
| MsG0480019490.01.T01 | MTR_6g022500 | 25.839 | 298 | 154 | 10 | 50 | 313 | 209 | 473 | 8.35e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019490.01.T01 | AT5G22730 | 26.970 | 330 | 167 | 12 | 19 | 313 | 173 | 463 | 3.67e-18 | 85.1 |
| MsG0480019490.01.T01 | AT5G22730 | 26.970 | 330 | 167 | 12 | 19 | 313 | 173 | 463 | 3.67e-18 | 85.1 |
| MsG0480019490.01.T01 | AT3G50710 | 27.607 | 326 | 183 | 11 | 3 | 313 | 137 | 424 | 7.31e-16 | 78.2 |
| MsG0480019490.01.T01 | AT5G22600 | 28.354 | 328 | 169 | 15 | 19 | 314 | 27 | 320 | 6.28e-15 | 74.7 |
| MsG0480019490.01.T01 | AT5G22600 | 28.354 | 328 | 169 | 15 | 19 | 314 | 27 | 320 | 6.28e-15 | 74.7 |
| MsG0480019490.01.T01 | AT1G05080 | 27.864 | 323 | 196 | 13 | 3 | 316 | 145 | 439 | 9.10e-15 | 75.1 |
| MsG0480019490.01.T01 | AT5G38570 | 26.923 | 286 | 166 | 10 | 36 | 315 | 127 | 375 | 1.39e-14 | 73.9 |
| MsG0480019490.01.T01 | AT4G26340 | 30.182 | 275 | 156 | 11 | 17 | 286 | 145 | 388 | 2.56e-14 | 73.6 |
| MsG0480019490.01.T01 | AT5G44950 | 26.367 | 311 | 181 | 12 | 19 | 309 | 150 | 432 | 3.11e-14 | 73.2 |
| MsG0480019490.01.T01 | AT5G56800 | 26.299 | 308 | 170 | 12 | 23 | 315 | 78 | 343 | 3.11e-14 | 72.8 |
| MsG0480019490.01.T01 | AT5G53840 | 25.817 | 306 | 189 | 11 | 19 | 313 | 159 | 437 | 5.96e-14 | 72.4 |
| MsG0480019490.01.T01 | AT1G13780 | 26.606 | 327 | 182 | 15 | 13 | 313 | 158 | 452 | 6.30e-14 | 72.4 |
| MsG0480019490.01.T01 | AT5G56820 | 27.545 | 334 | 177 | 16 | 3 | 313 | 132 | 423 | 7.77e-14 | 72.0 |
| MsG0480019490.01.T01 | AT5G53635 | 26.567 | 335 | 187 | 14 | 1 | 315 | 130 | 425 | 9.91e-14 | 71.6 |
| MsG0480019490.01.T01 | AT1G78750 | 27.492 | 331 | 191 | 15 | 1 | 313 | 156 | 455 | 6.65e-13 | 69.3 |
| MsG0480019490.01.T01 | AT1G78750 | 27.492 | 331 | 191 | 15 | 1 | 313 | 156 | 455 | 6.65e-13 | 69.3 |
| MsG0480019490.01.T01 | AT5G22610 | 26.113 | 337 | 193 | 14 | 9 | 316 | 158 | 467 | 6.89e-13 | 69.3 |
| MsG0480019490.01.T01 | AT5G22720 | 27.300 | 337 | 164 | 16 | 19 | 315 | 169 | 464 | 1.12e-12 | 68.6 |
| MsG0480019490.01.T01 | AT3G49480 | 25.000 | 300 | 168 | 11 | 3 | 286 | 154 | 412 | 2.71e-12 | 67.4 |
| MsG0480019490.01.T01 | AT5G44980 | 26.220 | 328 | 184 | 16 | 11 | 315 | 141 | 433 | 3.52e-12 | 67.0 |
| MsG0480019490.01.T01 | AT5G44980 | 26.220 | 328 | 184 | 16 | 11 | 315 | 141 | 433 | 3.52e-12 | 67.0 |
| MsG0480019490.01.T01 | AT3G49480 | 25.163 | 306 | 160 | 10 | 3 | 286 | 14 | 272 | 4.67e-12 | 66.2 |
| MsG0480019490.01.T01 | AT4G10420 | 25.786 | 318 | 196 | 10 | 3 | 316 | 41 | 322 | 1.60e-11 | 64.7 |
| MsG0480019490.01.T01 | AT5G56810 | 27.576 | 330 | 176 | 13 | 3 | 313 | 146 | 431 | 4.59e-11 | 63.9 |
Find 72 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTGCTAAATTCGATTT+TGG | 0.195943 | 4:+21112864 | None:intergenic |
| AATTCTGGAAACTCTAAATA+TGG | 0.196642 | 4:+21112584 | None:intergenic |
| GTCTTTCAATTGCAACAAAA+TGG | 0.267929 | 4:+21113140 | None:intergenic |
| CGATTCTTTCACCAGGCTTC+GGG | 0.290160 | 4:-21112986 | MsG0480019490.01.T01:CDS |
| TGAAGCAGATAGCAAAATTC+TGG | 0.306632 | 4:+21112569 | None:intergenic |
| ACGATTCTTTCACCAGGCTT+CGG | 0.317386 | 4:-21112987 | MsG0480019490.01.T01:CDS |
| CAGGAAAATCATGTTGAAAC+AGG | 0.324675 | 4:+21112529 | None:intergenic |
| TTGTATAATTCATCTAAATA+TGG | 0.327173 | 4:-21112355 | MsG0480019490.01.T01:CDS |
| TTTAGCAATGCCAGTGCGTT+TGG | 0.344549 | 4:-21112853 | MsG0480019490.01.T01:CDS |
| GATTTCCAACCTCTTCAATA+AGG | 0.359536 | 4:+21112954 | None:intergenic |
| GTGCCCCATTCTCGAAAATC+TGG | 0.378773 | 4:-21113025 | MsG0480019490.01.T01:CDS |
| AAAATCTTTATAGTCAATAA+AGG | 0.384950 | 4:+21112228 | None:intergenic |
| TCTGTGAATATCCTTCTCTC+TGG | 0.399658 | 4:-21113048 | MsG0480019490.01.T01:CDS |
| AATCTCTTCCGAGCTCTCTC+TGG | 0.422386 | 4:-21112754 | MsG0480019490.01.T01:CDS |
| AGACACTTAGGCACACTATC+AGG | 0.430855 | 4:+21112265 | None:intergenic |
| ATTTCTGAAGCATGTCAAAC+AGG | 0.440126 | 4:+21112510 | None:intergenic |
| ATTAATTCCACCCACTCCTC+CGG | 0.444542 | 4:+21112106 | None:intergenic |
| GTAATGTACCTCAGTCTTTG+CGG | 0.444891 | 4:-21113165 | MsG0480019490.01.T01:CDS |
| TGCTGCAGCACCCGGAGGAG+TGG | 0.451049 | 4:-21112117 | MsG0480019490.01.T01:CDS |
| ACAGATTGACTTTCAAGAAT+GGG | 0.461899 | 4:+21112790 | None:intergenic |
| AACAGATTGACTTTCAAGAA+TGG | 0.462740 | 4:+21112789 | None:intergenic |
| ATCACCTTTCTCTGAATGGC+TGG | 0.463238 | 4:-21112293 | MsG0480019490.01.T01:CDS |
| CATCTCAGTTAAATTGAAGT+TGG | 0.468152 | 4:+21112053 | None:intergenic |
| TTGAAGACGATGGTTATTAG+TGG | 0.469778 | 4:-21112148 | MsG0480019490.01.T01:CDS |
| ATCATCCTTATTGAAGAGGT+TGG | 0.472016 | 4:-21112959 | MsG0480019490.01.T01:CDS |
| CTCGGAAGAGATTGAACAAA+GGG | 0.476567 | 4:+21112764 | None:intergenic |
| GTTGCAATTGAAAGACTCTT+CGG | 0.479031 | 4:-21113133 | MsG0480019490.01.T01:CDS |
| ATTCTGGAAACTCTAAATAT+GGG | 0.479414 | 4:+21112585 | None:intergenic |
| TTAGATGAATTATACAAGAC+TGG | 0.489044 | 4:+21112361 | None:intergenic |
| GTTTAATTCCAGAGAGAGCT+CGG | 0.491395 | 4:+21112746 | None:intergenic |
| AGAATTTGCATCCGATCCAT+TGG | 0.494377 | 4:+21113068 | None:intergenic |
| TCGAATCACCTTTCTCTGAA+TGG | 0.496325 | 4:-21112297 | MsG0480019490.01.T01:CDS |
| TATCTGCTTCATCTAGATGT+TGG | 0.496429 | 4:-21112557 | MsG0480019490.01.T01:CDS |
| GGATGATTGCACCCGAAGCC+TGG | 0.499782 | 4:+21112975 | None:intergenic |
| GGTTAGCTTACCGTCATTGA+AGG | 0.502892 | 4:-21113109 | MsG0480019490.01.T01:CDS |
| GCTGCAGCACCCGGAGGAGT+GGG | 0.506292 | 4:-21112116 | MsG0480019490.01.T01:CDS |
| ATGCTTCTTTCACGTTGCAC+AGG | 0.507644 | 4:+21112827 | None:intergenic |
| ATTATGAAAGTTTGTAGCAT+GGG | 0.510938 | 4:+21112485 | None:intergenic |
| CTGTGAATATCCTTCTCTCT+GGG | 0.515147 | 4:-21113047 | MsG0480019490.01.T01:CDS |
| GGTGAAAGAATCGTGACAAA+AGG | 0.517168 | 4:+21112996 | None:intergenic |
| TTAATTCCACCCACTCCTCC+GGG | 0.518110 | 4:+21112107 | None:intergenic |
| TTTCATAATTCTCCAATGCA+TGG | 0.518608 | 4:-21112471 | MsG0480019490.01.T01:intron |
| CTGCAACTATTTGTTGCCAA+TGG | 0.523232 | 4:-21113084 | MsG0480019490.01.T01:CDS |
| AATTTATCTGCTGCAGCACC+CGG | 0.524347 | 4:-21112125 | MsG0480019490.01.T01:CDS |
| TCAAGGAAAGAGACAGGAGC+TGG | 0.524756 | 4:-21112206 | MsG0480019490.01.T01:CDS |
| GCTGGATCAATACTTAATAG+AGG | 0.527087 | 4:-21112716 | MsG0480019490.01.T01:intron |
| TTAACCAGCCATTCAGAGAA+AGG | 0.540945 | 4:+21112289 | None:intergenic |
| TGGCACATGGCAGATCCTCT+TGG | 0.542692 | 4:+21112073 | None:intergenic |
| GCAGCACCCGGAGGAGTGGG+TGG | 0.545281 | 4:-21112113 | MsG0480019490.01.T01:CDS |
| ATAATTCATCTAAATATGGA+TGG | 0.557459 | 4:-21112351 | MsG0480019490.01.T01:CDS |
| TGCAATCATCCTTATTGAAG+AGG | 0.557961 | 4:-21112963 | MsG0480019490.01.T01:CDS |
| CATCTAAATATGGATGGGTG+TGG | 0.559222 | 4:-21112345 | MsG0480019490.01.T01:CDS |
| TTTGTCACGATTCTTTCACC+AGG | 0.564007 | 4:-21112993 | MsG0480019490.01.T01:CDS |
| AAGTGCGATGCAAGACACTT+AGG | 0.565053 | 4:+21112253 | None:intergenic |
| AGGCTTAGGTATTTGAGACC+CGG | 0.578668 | 4:+21112889 | None:intergenic |
| TGGAATTAAACATCTAACGC+TGG | 0.578972 | 4:-21112734 | MsG0480019490.01.T01:CDS |
| GCACAGGTTTCCAAACGCAC+TGG | 0.582097 | 4:+21112843 | None:intergenic |
| GAATGGGGCACCCAGAGAGA+AGG | 0.585768 | 4:+21113037 | None:intergenic |
| AATTATGAAAGTTTGTAGCA+TGG | 0.586276 | 4:+21112484 | None:intergenic |
| TAATTCATCTAAATATGGAT+GGG | 0.590376 | 4:-21112350 | MsG0480019490.01.T01:CDS |
| GAACTGGACAAACCATGCAT+TGG | 0.599849 | 4:+21112459 | None:intergenic |
| TGCGTTGAGATAGACACGCC+GGG | 0.621959 | 4:-21112907 | MsG0480019490.01.T01:CDS |
| ACTATTTGTTGCCAATGGAT+CGG | 0.625739 | 4:-21113079 | MsG0480019490.01.T01:CDS |
| TTAATTTCTAATCTGCCAAG+AGG | 0.627005 | 4:-21112088 | MsG0480019490.01.T01:CDS |
| AGTTGCAGCACCTTCAATGA+CGG | 0.627778 | 4:+21113099 | None:intergenic |
| AGGAAAATCATGTTGAAACA+GGG | 0.639640 | 4:+21112530 | None:intergenic |
| GTTAAATTGAAGTTGGCACA+TGG | 0.646374 | 4:+21112060 | None:intergenic |
| GCAATTGAAAGACTCTTCGG+AGG | 0.650997 | 4:-21113130 | MsG0480019490.01.T01:CDS |
| GCTCGGAAGAGATTGAACAA+AGG | 0.657371 | 4:+21112763 | None:intergenic |
| AAATGGAACCGCAAAGACTG+AGG | 0.660958 | 4:+21113157 | None:intergenic |
| TTATCTGCTGCAGCACCCGG+AGG | 0.681940 | 4:-21112122 | MsG0480019490.01.T01:CDS |
| TTGCGTTGAGATAGACACGC+CGG | 0.684950 | 4:-21112908 | MsG0480019490.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATATAGAAAACTTTT+CGG | + | Chr4:21112532-21112551 | None:intergenic | 10.0% |
| !! | AAAATCTTTATAGTCAATAA+AGG | + | Chr4:21112994-21113013 | None:intergenic | 15.0% |
| !! | TTGTATAATTCATCTAAATA+TGG | - | Chr4:21112864-21112883 | MsG0480019490.01.T01:CDS | 15.0% |
| !! | ATAATTCATCTAAATATGGA+TGG | - | Chr4:21112868-21112887 | MsG0480019490.01.T01:CDS | 20.0% |
| !! | TAATTCATCTAAATATGGAT+GGG | - | Chr4:21112869-21112888 | MsG0480019490.01.T01:CDS | 20.0% |
| !!! | ATTGACTATAAAGATTTTCA+AGG | - | Chr4:21112996-21113015 | MsG0480019490.01.T01:CDS | 20.0% |
| ! | AATTATGAAAGTTTGTAGCA+TGG | + | Chr4:21112738-21112757 | None:intergenic | 25.0% |
| ! | ATTATGAAAGTTTGTAGCAT+GGG | + | Chr4:21112737-21112756 | None:intergenic | 25.0% |
| ! | TTAGATGAATTATACAAGAC+TGG | + | Chr4:21112861-21112880 | None:intergenic | 25.0% |
| !! | AATTCTGGAAACTCTAAATA+TGG | + | Chr4:21112638-21112657 | None:intergenic | 25.0% |
| !! | ATTCTGGAAACTCTAAATAT+GGG | + | Chr4:21112637-21112656 | None:intergenic | 25.0% |
| AGGAAAATCATGTTGAAACA+GGG | + | Chr4:21112692-21112711 | None:intergenic | 30.0% | |
| CACATTAGAACCAAACATAA+AGG | + | Chr4:21112810-21112829 | None:intergenic | 30.0% | |
| GTCTTTCAATTGCAACAAAA+TGG | + | Chr4:21112082-21112101 | None:intergenic | 30.0% | |
| TTAATTTCTAATCTGCCAAG+AGG | - | Chr4:21113131-21113150 | MsG0480019490.01.T01:CDS | 30.0% | |
| TTTCATAATTCTCCAATGCA+TGG | - | Chr4:21112748-21112767 | MsG0480019490.01.T01:CDS | 30.0% | |
| ! | AACAGATTGACTTTCAAGAA+TGG | + | Chr4:21112433-21112452 | None:intergenic | 30.0% |
| ! | ACAGATTGACTTTCAAGAAT+GGG | + | Chr4:21112432-21112451 | None:intergenic | 30.0% |
| ! | ATTCGCTATGTTTTGCAAAA+CGG | - | Chr4:21113041-21113060 | MsG0480019490.01.T01:CDS | 30.0% |
| !!! | TGTTTTTTGTGTATAAGCAG+AGG | - | Chr4:21112600-21112619 | MsG0480019490.01.T01:CDS | 30.0% |
| ATCATCCTTATTGAAGAGGT+TGG | - | Chr4:21112260-21112279 | MsG0480019490.01.T01:CDS | 35.0% | |
| CAGGAAAATCATGTTGAAAC+AGG | + | Chr4:21112693-21112712 | None:intergenic | 35.0% | |
| GATTTCCAACCTCTTCAATA+AGG | + | Chr4:21112268-21112287 | None:intergenic | 35.0% | |
| GCTGGATCAATACTTAATAG+AGG | - | Chr4:21112503-21112522 | MsG0480019490.01.T01:CDS | 35.0% | |
| GTTAAATTGAAGTTGGCACA+TGG | + | Chr4:21113162-21113181 | None:intergenic | 35.0% | |
| GTTCATCCTGTTGGAAAAAA+GGG | + | Chr4:21112839-21112858 | None:intergenic | 35.0% | |
| GTTGCAATTGAAAGACTCTT+CGG | - | Chr4:21112086-21112105 | MsG0480019490.01.T01:CDS | 35.0% | |
| TATCTGCTTCATCTAGATGT+TGG | - | Chr4:21112662-21112681 | MsG0480019490.01.T01:intron | 35.0% | |
| TGAAGCAGATAGCAAAATTC+TGG | + | Chr4:21112653-21112672 | None:intergenic | 35.0% | |
| TGCAATCATCCTTATTGAAG+AGG | - | Chr4:21112256-21112275 | MsG0480019490.01.T01:CDS | 35.0% | |
| TGGAATTAAACATCTAACGC+TGG | - | Chr4:21112485-21112504 | MsG0480019490.01.T01:CDS | 35.0% | |
| TTGAAGACGATGGTTATTAG+TGG | - | Chr4:21113071-21113090 | MsG0480019490.01.T01:CDS | 35.0% | |
| ! | ACTATTTGTTGCCAATGGAT+CGG | - | Chr4:21112140-21112159 | MsG0480019490.01.T01:CDS | 35.0% |
| ! | AGACACTTAGCAACAGTTTT+AGG | + | Chr4:21112903-21112922 | None:intergenic | 35.0% |
| ! | GGCATTGCTAAATTCGATTT+TGG | + | Chr4:21112358-21112377 | None:intergenic | 35.0% |
| !! | AAGTTCCAGATTTTCGAGAA+TGG | + | Chr4:21112202-21112221 | None:intergenic | 35.0% |
| !! | AGATTTTCAAGGAAAGAGAC+AGG | - | Chr4:21113007-21113026 | MsG0480019490.01.T01:CDS | 35.0% |
| !! | AGTTCCAGATTTTCGAGAAT+GGG | + | Chr4:21112201-21112220 | None:intergenic | 35.0% |
| !! | ATTTCTGAAGCATGTCAAAC+AGG | + | Chr4:21112712-21112731 | None:intergenic | 35.0% |
| !! | GGAAATCACTTTTGAGAATG+AGG | - | Chr4:21112281-21112300 | MsG0480019490.01.T01:CDS | 35.0% |
| !! | TGCTAAATTCGATTTTGGTC+AGG | + | Chr4:21112353-21112372 | None:intergenic | 35.0% |
| AGAATTTGCATCCGATCCAT+TGG | + | Chr4:21112154-21112173 | None:intergenic | 40.0% | |
| CATCTAAATATGGATGGGTG+TGG | - | Chr4:21112874-21112893 | MsG0480019490.01.T01:CDS | 40.0% | |
| CTCGGAAGAGATTGAACAAA+GGG | + | Chr4:21112458-21112477 | None:intergenic | 40.0% | |
| CTGTGAATATCCTTCTCTCT+GGG | - | Chr4:21112172-21112191 | MsG0480019490.01.T01:CDS | 40.0% | |
| GGTGAAAGAATCGTGACAAA+AGG | + | Chr4:21112226-21112245 | None:intergenic | 40.0% | |
| GGTTCATCCTGTTGGAAAAA+AGG | + | Chr4:21112840-21112859 | None:intergenic | 40.0% | |
| GTCCAGTTCAACTAAAGCTT+TGG | - | Chr4:21112774-21112793 | MsG0480019490.01.T01:CDS | 40.0% | |
| GTTTAATTCCAGAGAGAGCT+CGG | + | Chr4:21112476-21112495 | None:intergenic | 40.0% | |
| TCGAATCACCTTTCTCTGAA+TGG | - | Chr4:21112922-21112941 | MsG0480019490.01.T01:CDS | 40.0% | |
| TCTGTGAATATCCTTCTCTC+TGG | - | Chr4:21112171-21112190 | MsG0480019490.01.T01:CDS | 40.0% | |
| TGCATGCTGTCCTTTATGTT+TGG | - | Chr4:21112797-21112816 | MsG0480019490.01.T01:CDS | 40.0% | |
| TTAACCAGCCATTCAGAGAA+AGG | + | Chr4:21112933-21112952 | None:intergenic | 40.0% | |
| TTTGTCACGATTCTTTCACC+AGG | - | Chr4:21112226-21112245 | MsG0480019490.01.T01:CDS | 40.0% | |
| ! | CACCAAAGCTTTAGTTGAAC+TGG | + | Chr4:21112779-21112798 | None:intergenic | 40.0% |
| ! | CTGCAACTATTTGTTGCCAA+TGG | - | Chr4:21112135-21112154 | MsG0480019490.01.T01:CDS | 40.0% |
| !! | ATCACTTTTGAGAATGAGGC+TGG | - | Chr4:21112285-21112304 | MsG0480019490.01.T01:CDS | 40.0% |
| !! | ATTCGATTTTGGTCAGGCTT+AGG | + | Chr4:21112347-21112366 | None:intergenic | 40.0% |
| !! | GTTCCAGATTTTCGAGAATG+GGG | + | Chr4:21112200-21112219 | None:intergenic | 40.0% |
| AAATGGAACCGCAAAGACTG+AGG | + | Chr4:21112065-21112084 | None:intergenic | 45.0% | |
| AAGTGCGATGCAAGACACTT+AGG | + | Chr4:21112969-21112988 | None:intergenic | 45.0% | |
| AATTTATCTGCTGCAGCACC+CGG | - | Chr4:21113094-21113113 | MsG0480019490.01.T01:CDS | 45.0% | |
| ACGATTCTTTCACCAGGCTT+CGG | - | Chr4:21112232-21112251 | MsG0480019490.01.T01:CDS | 45.0% | |
| AGACACTTAGGCACACTATC+AGG | + | Chr4:21112957-21112976 | None:intergenic | 45.0% | |
| AGTTGCAGCACCTTCAATGA+CGG | + | Chr4:21112123-21112142 | None:intergenic | 45.0% | |
| ATCACCTTTCTCTGAATGGC+TGG | - | Chr4:21112926-21112945 | MsG0480019490.01.T01:CDS | 45.0% | |
| ATGCTTCTTTCACGTTGCAC+AGG | + | Chr4:21112395-21112414 | None:intergenic | 45.0% | |
| ATTAATTCCACCCACTCCTC+CGG | + | Chr4:21113116-21113135 | None:intergenic | 45.0% | |
| GAACTGGACAAACCATGCAT+TGG | + | Chr4:21112763-21112782 | None:intergenic | 45.0% | |
| GCAATTGAAAGACTCTTCGG+AGG | - | Chr4:21112089-21112108 | MsG0480019490.01.T01:CDS | 45.0% | |
| GCTCGGAAGAGATTGAACAA+AGG | + | Chr4:21112459-21112478 | None:intergenic | 45.0% | |
| TTTAGCAATGCCAGTGCGTT+TGG | - | Chr4:21112366-21112385 | MsG0480019490.01.T01:CDS | 45.0% | |
| ! | ACAAGACTGGTTCATCCTGT+TGG | + | Chr4:21112848-21112867 | None:intergenic | 45.0% |
| ! | AGGCTTAGGTATTTGAGACC+CGG | + | Chr4:21112333-21112352 | None:intergenic | 45.0% |
| !! | ACTTTTGAGAATGAGGCTGG+AGG | - | Chr4:21112288-21112307 | MsG0480019490.01.T01:CDS | 45.0% |
| !! | CGGACTTCTTTTGAAGACGA+TGG | - | Chr4:21113061-21113080 | MsG0480019490.01.T01:CDS | 45.0% |
| !! | GGTTAGCTTACCGTCATTGA+AGG | - | Chr4:21112110-21112129 | MsG0480019490.01.T01:CDS | 45.0% |
| !!! | AGCTGTCCCTTTTTTCCAAC+AGG | - | Chr4:21112830-21112849 | MsG0480019490.01.T01:CDS | 45.0% |
| AATCTCTTCCGAGCTCTCTC+TGG | - | Chr4:21112465-21112484 | MsG0480019490.01.T01:intron | 50.0% | |
| CGATTCTTTCACCAGGCTTC+GGG | - | Chr4:21112233-21112252 | MsG0480019490.01.T01:CDS | 50.0% | |
| GTGCCCCATTCTCGAAAATC+TGG | - | Chr4:21112194-21112213 | MsG0480019490.01.T01:CDS | 50.0% | |
| TCAAGGAAAGAGACAGGAGC+TGG | - | Chr4:21113013-21113032 | MsG0480019490.01.T01:CDS | 50.0% | |
| TTAATTCCACCCACTCCTCC+GGG | + | Chr4:21113115-21113134 | None:intergenic | 50.0% | |
| TTGCGTTGAGATAGACACGC+CGG | - | Chr4:21112311-21112330 | MsG0480019490.01.T01:CDS | 50.0% | |
| GCACAGGTTTCCAAACGCAC+TGG | + | Chr4:21112379-21112398 | None:intergenic | 55.0% | |
| TGCGTTGAGATAGACACGCC+GGG | - | Chr4:21112312-21112331 | MsG0480019490.01.T01:CDS | 55.0% | |
| TGGCACATGGCAGATCCTCT+TGG | + | Chr4:21113149-21113168 | None:intergenic | 55.0% | |
| GGATGATTGCACCCGAAGCC+TGG | + | Chr4:21112247-21112266 | None:intergenic | 60.0% | |
| TTATCTGCTGCAGCACCCGG+AGG | - | Chr4:21113097-21113116 | MsG0480019490.01.T01:CDS | 60.0% | |
| ! | GAATGGGGCACCCAGAGAGA+AGG | + | Chr4:21112185-21112204 | None:intergenic | 60.0% |
| GCTGCAGCACCCGGAGGAGT+GGG | - | Chr4:21113103-21113122 | MsG0480019490.01.T01:CDS | 70.0% | |
| TGCTGCAGCACCCGGAGGAG+TGG | - | Chr4:21113102-21113121 | MsG0480019490.01.T01:CDS | 70.0% | |
| GCAGCACCCGGAGGAGTGGG+TGG | - | Chr4:21113106-21113125 | MsG0480019490.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 21112057 | 21113184 | 21112057 | ID=MsG0480019490.01;Name=MsG0480019490.01 |
| Chr4 | mRNA | 21112057 | 21113184 | 21112057 | ID=MsG0480019490.01.T01;Parent=MsG0480019490.01;Name=MsG0480019490.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|316 |
| Chr4 | exon | 21112717 | 21113184 | 21112717 | ID=MsG0480019490.01.T01:exon:10259;Parent=MsG0480019490.01.T01 |
| Chr4 | exon | 21112472 | 21112621 | 21112472 | ID=MsG0480019490.01.T01:exon:10258;Parent=MsG0480019490.01.T01 |
| Chr4 | exon | 21112057 | 21112389 | 21112057 | ID=MsG0480019490.01.T01:exon:10257;Parent=MsG0480019490.01.T01 |
| Chr4 | CDS | 21112717 | 21113184 | 21112717 | ID=MsG0480019490.01.T01:cds;Parent=MsG0480019490.01.T01 |
| Chr4 | CDS | 21112472 | 21112621 | 21112472 | ID=MsG0480019490.01.T01:cds;Parent=MsG0480019490.01.T01 |
| Chr4 | CDS | 21112057 | 21112389 | 21112057 | ID=MsG0480019490.01.T01:cds;Parent=MsG0480019490.01.T01 |
| Gene Sequence |
| Protein sequence |
