AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044814.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044814.01.T01 MTR_8g468810 72.163 467 70 5 1 411 1 463 0.0 640
MsG0880044814.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 520
MsG0880044814.01.T01 MTR_8g468810 81.875 320 54 2 1 320 1 316 0.0 519
MsG0880044814.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 518
MsG0880044814.01.T01 MTR_8g468810 82.390 318 52 2 1 318 1 314 0.0 516
MsG0880044814.01.T01 MTR_8g058970 54.021 485 141 6 1 411 1 477 2.03e-164 471
MsG0880044814.01.T01 MTR_2g083840 50.214 468 165 7 1 411 1 457 2.64e-141 411
MsG0880044814.01.T01 MTR_8g468760 51.044 431 165 13 12 410 2 418 2.22e-122 362
MsG0880044814.01.T01 MTR_8g468840 45.147 443 177 8 26 409 13 448 7.59e-106 320
MsG0880044814.01.T01 MTR_5g092960 44.912 452 172 12 27 410 19 461 2.25e-102 312
MsG0880044814.01.T01 MTR_4g032730 54.723 307 125 6 11 312 2 299 4.61e-95 293
MsG0880044814.01.T01 MTR_4g032730 48.837 86 38 2 326 410 386 466 1.37e-18 87.8
MsG0880044814.01.T01 MTR_8g062270 53.608 291 127 4 27 311 16 304 4.32e-89 277
MsG0880044814.01.T01 MTR_8g014160 40.723 415 228 10 6 411 20 425 4.67e-84 263
MsG0880044814.01.T01 MTR_8g014260 38.641 471 206 15 2 411 3 451 1.08e-82 261
MsG0880044814.01.T01 MTR_8g058965 37.500 472 214 11 12 416 4 461 6.09e-81 256
MsG0880044814.01.T01 MTR_8g467800 40.000 470 200 13 5 411 3 453 7.09e-79 251
MsG0880044814.01.T01 MTR_5g092960 48.658 298 137 7 27 311 19 313 2.36e-78 248
MsG0880044814.01.T01 MTR_8g467800 50.962 312 135 8 5 311 3 301 2.41e-76 241
MsG0880044814.01.T01 MTR_8g077460 41.103 399 203 14 20 411 2 375 1.20e-71 230
MsG0880044814.01.T01 MTR_8g445780 38.983 413 176 11 1 361 1 389 1.63e-71 230
MsG0880044814.01.T01 MTR_8g070950 36.534 479 199 19 1 415 1 438 1.32e-66 219
MsG0880044814.01.T01 MTR_8g062010 36.526 449 208 13 20 411 2 430 1.87e-66 218
MsG0880044814.01.T01 MTR_4g050250 37.383 428 179 12 2 353 4 418 1.09e-64 213
MsG0880044814.01.T01 MTR_8g062080 35.307 456 211 14 22 416 18 450 1.13e-64 214
MsG0880044814.01.T01 MTR_8g469020 44.086 279 131 10 27 286 7 279 2.74e-57 195
MsG0880044814.01.T01 MTR_8g469020 46.067 89 44 2 329 415 369 455 3.31e-16 80.5
MsG0880044814.01.T01 MTR_8g467790 36.364 363 182 15 27 355 148 495 2.33e-50 177
MsG0880044814.01.T01 MTR_5g021550 52.023 173 67 6 1 168 1 162 3.16e-43 149
MsG0880044814.01.T01 MTR_8g062310 39.286 280 135 10 27 303 25 272 6.50e-41 150
MsG0880044814.01.T01 MTR_8g062310 45.882 85 42 2 329 411 346 428 1.54e-15 78.6
MsG0880044814.01.T01 MTR_2g086020 34.140 372 183 14 53 415 1 319 8.23e-41 147
MsG0880044814.01.T01 MTR_4g024710 34.459 296 135 8 169 411 58 347 2.24e-35 134
MsG0880044814.01.T01 MTR_8g062300 35.890 326 161 12 3 305 5 305 2.71e-35 136
MsG0880044814.01.T01 MTR_8g062300 37.931 116 68 2 296 411 366 477 8.86e-15 76.3
MsG0880044814.01.T01 MTR_8g014290 44.720 161 77 6 19 169 2 160 1.31e-33 123
MsG0880044814.01.T01 MTR_4g024720 40.212 189 79 8 1 168 1 176 1.80e-30 117
MsG0880044814.01.T01 MTR_4g024745 33.948 271 127 7 167 386 10 279 1.62e-28 113
MsG0880044814.01.T01 MTR_8g014210 34.746 236 99 5 226 411 1 231 5.34e-28 110
MsG0880044814.01.T01 MTR_3g107120 29.736 417 235 14 20 408 2 388 2.51e-26 109
MsG0880044814.01.T01 MTR_8g014220 35.484 217 76 7 2 213 3 160 8.48e-25 100
MsG0880044814.01.T01 MTR_5g008920 29.280 403 243 17 24 411 6 381 2.29e-24 103
MsG0880044814.01.T01 MTR_3g107100 27.913 412 258 14 23 413 7 400 1.70e-23 102
MsG0880044814.01.T01 MTR_1g041245 35.204 196 109 5 27 218 11 192 7.09e-23 99.8
MsG0880044814.01.T01 MTR_3g036250 27.778 396 235 13 27 408 5 363 1.48e-22 98.6
MsG0880044814.01.T01 MTR_5g008950 26.076 395 250 13 29 411 1 365 1.58e-21 95.9
MsG0880044814.01.T01 MTR_7g098510 27.569 399 258 11 23 411 14 391 2.18e-21 95.5
MsG0880044814.01.T01 MTR_7g114710 28.000 400 225 15 27 411 13 364 2.91e-21 94.7
MsG0880044814.01.T01 MTR_3g107160 25.622 402 270 8 19 411 2 383 3.01e-21 95.1
MsG0880044814.01.T01 MTR_3g023630 27.390 387 251 15 24 404 5 367 3.57e-21 94.7
MsG0880044814.01.T01 MTR_4g113810 35.119 168 102 5 109 271 1 166 5.91e-20 87.0
MsG0880044814.01.T01 MTR_7g056447 35.784 204 103 10 20 215 2 185 9.96e-20 89.4
MsG0880044814.01.T01 MTR_3g108150 26.969 419 236 16 22 410 8 386 1.04e-19 90.5
MsG0880044814.01.T01 MTR_4g056040 31.563 339 171 14 22 317 4 324 1.10e-19 91.3
MsG0880044814.01.T01 MTR_7g033915 27.338 417 217 15 22 410 6 364 1.76e-19 89.7
MsG0880044814.01.T01 MTR_7g032380 35.714 196 108 7 27 218 11 192 2.62e-19 89.0
MsG0880044814.01.T01 MTR_7g056433 26.225 408 268 13 17 411 2 389 3.07e-19 89.4
MsG0880044814.01.T01 MTR_4g056030 30.199 351 207 13 22 358 4 330 4.16e-19 89.4
MsG0880044814.01.T01 MTR_3g105060 25.505 396 248 14 27 411 14 373 6.10e-19 88.2
MsG0880044814.01.T01 MTR_6g022500 28.261 368 233 13 21 376 95 443 8.57e-19 88.6
MsG0880044814.01.T01 MTR_7g033990 27.553 421 215 16 22 403 6 375 8.76e-19 88.2
MsG0880044814.01.T01 MTR_7g098570 26.817 399 245 15 27 407 20 389 9.13e-19 88.6
MsG0880044814.01.T01 MTR_2g008320 27.685 419 240 17 20 411 45 427 1.25e-18 87.8
MsG0880044814.01.T01 MTR_7g115270 25.768 423 240 16 26 408 11 399 2.18e-18 86.7
MsG0880044814.01.T01 MTR_3g071850 26.173 405 258 15 20 403 17 401 2.85e-18 87.8
MsG0880044814.01.T01 MTR_4g056020 31.803 305 177 13 22 313 4 290 4.91e-18 86.3
MsG0880044814.01.T01 MTR_5g080710 26.773 437 237 16 27 403 33 446 9.31e-18 85.5
MsG0880044814.01.T01 MTR_3g040700 26.216 370 240 10 7 368 22 366 9.85e-18 85.1
MsG0880044814.01.T01 MTR_5g058100 27.451 408 251 15 21 410 3 383 1.82e-17 84.0
MsG0880044814.01.T01 MTR_7g026500 24.554 448 246 14 1 410 1 394 2.95e-17 83.6
MsG0880044814.01.T01 MTR_4g056070 29.915 351 171 15 22 317 4 334 4.34e-17 83.2
MsG0880044814.01.T01 MTR_2g008310 26.716 408 238 16 27 411 2 371 5.06e-17 82.8
MsG0880044814.01.T01 MTR_1g085120 25.768 423 241 17 23 411 163 546 6.11e-17 83.2
MsG0880044814.01.T01 MTR_1g085120 25.768 423 241 17 23 411 88 471 6.19e-17 82.8
MsG0880044814.01.T01 MTR_4g055990 28.994 338 180 12 22 313 4 327 1.91e-16 81.6
MsG0880044814.01.T01 MTR_4g055990 28.994 338 180 12 22 313 4 327 2.43e-16 81.3
MsG0880044814.01.T01 MTR_8g085430 33.333 210 109 7 23 218 7 199 3.13e-16 79.7
MsG0880044814.01.T01 MTR_2g007400 26.316 418 259 16 22 411 7 403 3.31e-16 80.5
MsG0880044814.01.T01 MTR_7g098480 26.582 395 263 9 23 410 14 388 5.98e-16 80.1
MsG0880044814.01.T01 MTR_3g467400 27.561 410 227 18 27 411 3 367 7.62e-16 79.0
MsG0880044814.01.T01 MTR_7g056420 25.120 418 221 13 20 405 2 359 1.61e-15 79.3
MsG0880044814.01.T01 MTR_4g055580 29.971 347 174 16 17 313 90 417 1.69e-15 79.0
MsG0880044814.01.T01 MTR_7g056430 25.120 418 221 13 20 405 2 359 1.85e-15 79.3
MsG0880044814.01.T01 MTR_3g082890 26.619 417 245 14 27 411 97 484 2.05e-15 78.2
MsG0880044814.01.T01 MTR_8g014230 52.000 75 32 2 327 401 25 95 2.30e-15 72.0
MsG0880044814.01.T01 MTR_7g088260 24.939 409 258 14 21 411 85 462 2.45e-15 78.2
MsG0880044814.01.T01 MTR_5g084070 25.404 433 241 15 27 403 13 419 2.58e-15 77.8
MsG0880044814.01.T01 MTR_2g007500 32.850 207 108 6 20 220 7 188 2.75e-15 77.0
MsG0880044814.01.T01 MTR_1089s0010 25.481 416 235 18 27 411 8 379 3.49e-15 77.0
MsG0880044814.01.T01 MTR_4g093690 34.010 197 107 8 27 215 18 199 1.11e-14 74.3
MsG0880044814.01.T01 MTR_7g056277 24.173 393 265 12 27 410 259 627 1.24e-14 76.3
MsG0880044814.01.T01 MTR_5g073420 26.355 406 244 18 27 412 11 381 3.30e-14 73.9
MsG0880044814.01.T01 MTR_7g034110 26.629 353 187 16 21 362 5 296 3.78e-14 73.6
MsG0880044814.01.T01 MTR_6g011460 25.968 439 246 16 7 411 28 421 3.97e-14 73.9
MsG0880044814.01.T01 MTR_7g034115 26.722 363 235 12 27 378 11 353 4.94e-14 73.6
MsG0880044814.01.T01 MTR_4g024770 49.315 73 25 2 2 74 10 70 8.71e-14 66.6
MsG0880044814.01.T01 MTR_1g053025 24.688 401 267 14 27 408 2 386 9.14e-14 72.8
MsG0880044814.01.T01 MTR_5g083890 26.963 382 236 13 26 376 5 374 1.65e-13 72.4
MsG0880044814.01.T01 MTR_1g038710 28.053 303 187 10 27 313 19 306 2.51e-13 71.6
MsG0880044814.01.T01 MTR_5g058000 27.696 408 230 17 27 410 8 374 2.60e-13 71.2
MsG0880044814.01.T01 MTR_7g056287 24.557 395 261 14 27 410 3 371 4.96e-13 70.5
MsG0880044814.01.T01 MTR_7g032370 33.880 183 104 7 39 218 2 170 5.40e-13 70.1
MsG0880044814.01.T01 MTR_1g107385 28.009 432 230 19 21 408 26 420 3.35e-12 68.2
MsG0880044814.01.T01 MTR_1g066830 25.971 412 244 18 27 410 8 386 6.10e-12 67.0
MsG0880044814.01.T01 MTR_7g055943 26.794 418 245 19 23 411 36 421 8.97e-12 67.0
MsG0880044814.01.T01 MTR_6g044560 25.114 438 261 17 7 411 161 564 1.08e-11 67.0
MsG0880044814.01.T01 MTR_1g108820 26.214 412 238 20 27 408 8 383 1.25e-11 66.2
MsG0880044814.01.T01 MTR_6g044572 24.515 412 259 15 27 411 2 388 2.45e-11 65.5
MsG0880044814.01.T01 MTR_1g090900 33.143 175 105 4 20 194 4 166 5.37e-11 62.0
MsG0880044814.01.T01 MTR_3g048290 28.349 321 180 15 18 311 14 311 6.05e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044814.01.T01 AT4G26340 28.217 443 235 16 27 411 2 419 2.56e-29 118
MsG0880044814.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044814.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044814.01.T01 AT1G16930 26.013 469 233 20 25 411 13 449 5.75e-27 112
MsG0880044814.01.T01 AT5G56370 27.009 448 234 18 27 410 2 420 2.04e-26 110
MsG0880044814.01.T01 AT5G56370 27.009 448 234 18 27 410 2 420 2.04e-26 110
MsG0880044814.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044814.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044814.01.T01 AT5G56420 26.106 452 238 18 24 411 3 422 2.68e-25 107
MsG0880044814.01.T01 AT1G78760 25.983 458 236 20 24 408 13 440 3.89e-25 107
MsG0880044814.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044814.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044814.01.T01 AT4G10400 25.463 432 249 15 27 410 2 408 6.95e-25 105
MsG0880044814.01.T01 AT5G56440 26.281 449 245 16 27 410 2 429 3.46e-24 104
MsG0880044814.01.T01 AT1G78750 25.862 464 265 15 11 408 5 455 4.02e-24 104
MsG0880044814.01.T01 AT1G78750 25.862 464 265 15 11 408 5 455 4.02e-24 104
MsG0880044814.01.T01 AT4G00160 28.635 447 241 18 26 411 15 444 6.11e-24 103
MsG0880044814.01.T01 AT5G38590 27.000 400 224 13 27 376 2 383 6.38e-24 103
MsG0880044814.01.T01 AT1G55660 26.211 454 250 15 27 410 53 491 1.12e-22 100
MsG0880044814.01.T01 AT5G38590 29.352 293 176 12 27 311 2 271 2.27e-22 96.7
MsG0880044814.01.T01 AT3G50710 25.901 444 252 16 27 411 2 427 4.70e-22 97.8
MsG0880044814.01.T01 AT3G52680 28.475 446 241 20 26 411 20 447 5.04e-22 98.2
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 1.68e-21 94.7
MsG0880044814.01.T01 AT1G06630 30.380 316 193 11 26 328 11 312 4.12e-21 94.4
MsG0880044814.01.T01 AT1G06630 30.380 316 193 11 26 328 11 312 4.12e-21 94.4
MsG0880044814.01.T01 AT4G14096 29.180 305 191 10 26 317 7 299 4.56e-21 95.5
MsG0880044814.01.T01 AT4G14096 29.180 305 191 10 26 317 7 299 4.56e-21 95.5
MsG0880044814.01.T01 AT1G32375 25.113 442 253 15 27 411 2 422 4.96e-21 95.1
MsG0880044814.01.T01 AT1G32375 25.113 442 253 15 27 411 2 422 4.96e-21 95.1
MsG0880044814.01.T01 AT1G80470 27.451 306 193 13 24 317 12 300 5.22e-21 95.1
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.31e-21 95.1
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044814.01.T01 AT1G06630 30.164 305 187 10 26 318 11 301 6.87e-21 94.4
MsG0880044814.01.T01 AT1G06630 30.380 316 193 11 26 328 20 321 7.62e-21 94.4
MsG0880044814.01.T01 AT1G66310 27.468 466 235 21 14 408 6 439 1.63e-20 93.6
MsG0880044814.01.T01 AT1G55660 27.703 296 195 9 27 311 53 340 1.94e-20 92.4
MsG0880044814.01.T01 AT5G53840 30.651 261 162 9 17 274 8 252 2.28e-20 93.2
MsG0880044814.01.T01 AT5G22730 26.205 477 253 21 7 408 11 463 2.47e-20 93.2
MsG0880044814.01.T01 AT5G22730 26.205 477 253 21 7 408 11 463 2.47e-20 93.2
MsG0880044814.01.T01 AT5G56370 29.693 293 174 12 27 313 2 268 3.93e-20 90.9
MsG0880044814.01.T01 AT4G14103 29.206 315 187 11 25 317 6 306 5.66e-20 91.3
MsG0880044814.01.T01 AT4G14103 29.206 315 187 11 25 317 6 306 5.66e-20 91.3
MsG0880044814.01.T01 AT4G14103 29.299 314 186 11 26 317 7 306 6.43e-20 91.7
MsG0880044814.01.T01 AT5G60610 24.466 421 213 16 27 377 2 387 1.39e-19 90.5
MsG0880044814.01.T01 AT5G60610 24.466 421 213 16 27 377 2 387 1.39e-19 90.5
MsG0880044814.01.T01 AT4G00315 25.167 449 261 14 27 410 2 440 1.44e-19 90.9
MsG0880044814.01.T01 AT2G04230 26.555 418 223 13 25 377 11 409 4.18e-19 89.4
MsG0880044814.01.T01 AT3G58940 24.943 437 237 16 27 394 2 416 6.42e-19 89.4
MsG0880044814.01.T01 AT3G58940 24.943 437 237 16 27 394 2 416 6.42e-19 89.4
MsG0880044814.01.T01 AT5G38570 23.678 435 224 13 27 412 2 377 1.29e-18 87.4
MsG0880044814.01.T01 AT4G15060 28.818 347 199 17 27 346 172 497 1.34e-18 88.2
MsG0880044814.01.T01 AT2G26860 26.540 422 213 18 27 377 2 397 3.59e-18 86.3
MsG0880044814.01.T01 AT2G26860 26.540 422 213 18 27 377 2 397 3.59e-18 86.3
MsG0880044814.01.T01 AT4G09920 28.483 323 195 16 27 339 2 298 3.60e-18 85.1
MsG0880044814.01.T01 AT4G09920 28.483 323 195 16 27 339 2 298 3.60e-18 85.1
MsG0880044814.01.T01 AT1G69630 26.991 452 239 19 27 408 18 448 4.65e-18 86.3
MsG0880044814.01.T01 AT3G49030 25.714 420 258 17 26 413 20 417 5.21e-18 85.9
MsG0880044814.01.T01 AT4G15060 28.395 324 192 15 27 331 26 328 5.30e-18 85.9
MsG0880044814.01.T01 AT5G56380 25.771 454 252 18 27 411 2 439 7.48e-18 85.5
MsG0880044814.01.T01 AT5G56380 25.771 454 252 18 27 411 2 439 7.48e-18 85.5
MsG0880044814.01.T01 AT5G56810 27.293 458 248 21 14 410 2 435 1.14e-17 85.1
MsG0880044814.01.T01 AT5G22670 35.178 253 135 12 24 264 8 243 1.48e-17 84.7
MsG0880044814.01.T01 AT3G59200 28.520 277 175 12 26 291 6 270 2.11e-17 83.6
MsG0880044814.01.T01 AT3G59200 28.417 278 176 12 25 291 5 270 3.56e-17 84.0
MsG0880044814.01.T01 AT1G05080 25.056 443 258 13 26 410 12 438 5.99e-17 82.8
MsG0880044814.01.T01 AT5G41840 27.217 327 192 13 27 314 14 333 9.04e-17 82.8
MsG0880044814.01.T01 AT4G13985 27.103 321 213 9 12 317 4 318 1.12e-16 82.0
MsG0880044814.01.T01 AT5G56400 23.884 448 257 16 25 411 31 455 2.29e-16 81.3
MsG0880044814.01.T01 AT4G22280 31.228 285 167 11 27 301 2 267 2.39e-16 80.1
MsG0880044814.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044814.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044814.01.T01 AT4G09920 29.900 301 174 18 27 314 2 278 2.90e-16 79.3
MsG0880044814.01.T01 AT4G22280 31.228 285 167 11 27 301 2 267 3.17e-16 80.5
MsG0880044814.01.T01 AT3G52680 30.943 265 159 11 10 265 4 253 5.66e-16 79.3
MsG0880044814.01.T01 AT1G51370 26.009 446 236 21 26 408 18 432 5.70e-16 79.7
MsG0880044814.01.T01 AT3G10750 25.397 315 197 12 55 366 2 281 5.88e-16 78.6
MsG0880044814.01.T01 AT2G26030 25.108 462 243 20 25 408 2 438 8.14e-16 79.3
MsG0880044814.01.T01 AT2G26030 25.108 462 243 20 25 408 2 438 8.14e-16 79.3
MsG0880044814.01.T01 AT5G53640 28.372 215 128 8 8 217 3 196 1.41e-15 75.9
MsG0880044814.01.T01 AT1G13780 26.464 427 225 18 27 377 10 423 2.18e-15 78.2
MsG0880044814.01.T01 AT5G56410 25.698 358 209 16 27 356 2 330 4.27e-15 77.4
MsG0880044814.01.T01 AT3G49030 24.324 444 260 18 26 413 20 443 5.53e-15 77.0
MsG0880044814.01.T01 AT2G26030 28.797 316 180 16 25 314 2 298 5.98e-15 76.6
MsG0880044814.01.T01 AT3G26922 30.063 316 170 15 25 317 12 299 6.17e-15 75.5
MsG0880044814.01.T01 AT3G26922 30.063 316 170 15 25 317 12 299 6.17e-15 75.5
MsG0880044814.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044814.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044814.01.T01 AT3G54910 25.745 369 217 11 88 411 17 373 6.20e-15 76.3
MsG0880044814.01.T01 AT5G56560 22.247 445 257 14 26 411 4 418 7.60e-15 76.3
MsG0880044814.01.T01 AT5G44950 27.294 425 215 23 26 377 3 406 9.52e-15 76.3
MsG0880044814.01.T01 AT5G56690 27.536 276 173 14 29 291 4 265 1.21e-14 75.5
MsG0880044814.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 2.16e-14 74.7
MsG0880044814.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 2.16e-14 74.7
MsG0880044814.01.T01 AT3G44810 30.769 247 145 8 29 260 9 244 3.58e-14 74.3
MsG0880044814.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 4.04e-14 74.3
MsG0880044814.01.T01 AT5G18780 33.333 264 135 14 18 264 2 241 4.04e-14 74.3
MsG0880044814.01.T01 AT5G53635 23.831 449 250 16 29 410 2 425 6.47e-14 73.6
MsG0880044814.01.T01 AT3G59190 28.740 254 156 11 25 264 10 252 8.29e-14 73.6
MsG0880044814.01.T01 AT1G13780 29.644 253 150 10 27 262 10 251 1.16e-13 72.0
MsG0880044814.01.T01 AT3G59190 28.740 254 156 11 25 264 10 252 1.30e-13 72.4
MsG0880044814.01.T01 AT4G10420 22.388 335 192 11 129 410 2 321 1.80e-13 71.2
MsG0880044814.01.T01 AT3G58860 28.676 272 176 11 27 291 7 267 1.81e-13 72.4
MsG0880044814.01.T01 AT4G13965 25.115 434 254 17 25 408 8 420 3.18e-13 71.2
MsG0880044814.01.T01 AT5G38590 27.753 227 143 8 93 313 27 238 3.66e-13 69.7
MsG0880044814.01.T01 AT4G00320 26.374 273 168 9 23 269 9 274 4.23e-13 71.2
MsG0880044814.01.T01 AT5G41830 27.972 286 175 9 26 286 12 291 5.70e-13 70.9
MsG0880044814.01.T01 AT3G44060 27.922 308 184 13 29 318 1 288 7.87e-13 70.1
MsG0880044814.01.T01 AT3G59170 29.856 278 153 10 25 265 5 277 1.13e-12 69.7
MsG0880044814.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044814.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044814.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044814.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044814.01.T01 AT3G59210 33.168 202 115 7 26 219 6 195 1.29e-12 69.7
MsG0880044814.01.T01 AT5G56390 26.774 310 194 9 27 323 2 291 1.60e-12 69.3
MsG0880044814.01.T01 AT5G56700 29.148 223 138 10 66 282 2 210 1.83e-12 67.8
MsG0880044814.01.T01 AT5G22660 26.293 464 247 20 17 408 3 443 1.92e-12 68.9
MsG0880044814.01.T01 AT3G56780 27.113 284 172 10 162 416 201 478 2.35e-12 68.9
MsG0880044814.01.T01 AT2G29930 26.984 315 181 14 26 317 11 299 3.65e-12 68.2
MsG0880044814.01.T01 AT2G29930 26.984 315 181 14 26 317 11 299 3.65e-12 68.2
MsG0880044814.01.T01 AT5G35995 28.571 308 189 14 25 317 3 294 4.51e-12 67.8
MsG0880044814.01.T01 AT5G35995 28.571 308 189 14 25 317 3 294 4.51e-12 67.8
MsG0880044814.01.T01 AT1G60410 27.626 257 150 11 24 264 7 243 5.83e-12 67.4
MsG0880044814.01.T01 AT5G38390 31.621 253 139 11 27 269 2 230 1.94e-11 65.9
MsG0880044814.01.T01 AT5G18770 25.460 326 203 11 9 317 14 316 2.01e-11 65.5
MsG0880044814.01.T01 AT1G58310 28.231 294 172 12 25 291 6 287 2.14e-11 65.9
MsG0880044814.01.T01 AT1G56610 30.112 269 151 13 20 268 3 254 2.65e-11 65.5
MsG0880044814.01.T01 AT5G18770 25.460 326 203 11 9 317 14 316 3.25e-11 65.5
MsG0880044814.01.T01 AT4G26350 31.818 198 116 8 27 220 2 184 3.55e-11 65.1
MsG0880044814.01.T01 AT5G56810 28.213 319 181 15 14 305 2 299 3.84e-11 64.3
MsG0880044814.01.T01 AT3G49040 26.599 297 185 12 25 311 15 288 4.77e-11 63.9
MsG0880044814.01.T01 AT1G56610 30.112 269 151 13 20 268 66 317 6.61e-11 64.7
MsG0880044814.01.T01 AT3G59160 26.837 313 181 12 16 291 3 304 8.49e-11 63.9

Find 113 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTACAAAATGACCATTTA+TGG 0.085766 8:+49528928 None:intergenic
CTGTCCAATCTTAGAAATTT+TGG 0.135666 8:-49527406 MsG0880044814.01.T01:CDS
TTGACCTATATTCACTTTAA+AGG 0.147428 8:-49526648 MsG0880044814.01.T01:CDS
TTGAAGACAATGCTTATTTC+TGG 0.178189 8:-49526564 MsG0880044814.01.T01:CDS
GTTAAATTTGACCAAGTTCT+AGG 0.208686 8:-49526453 MsG0880044814.01.T01:CDS
TCGAAAATTGTCTGAGAAAA+TGG 0.210666 8:+49526505 None:intergenic
CTTGCAGGAGAGTGGGTAAA+AGG 0.305542 8:+49527148 None:intergenic
AGTTCCAAAATTTCTAAGAT+TGG 0.318329 8:+49527402 None:intergenic
CGGTGAGATCTTTGTGGAAT+TGG 0.324937 8:-49527523 MsG0880044814.01.T01:CDS
CTGAATTAGCGCAGTTTATG+AGG 0.341183 8:-49528876 MsG0880044814.01.T01:five_prime_UTR
AAGTGGGATACAAGACAATT+AGG 0.370823 8:+49526669 None:intergenic
AGAGGAGGTTAGTGCATGAT+AGG 0.377152 8:+49528280 None:intergenic
ATTCACTTTAAAGGATATAC+AGG 0.383467 8:-49526639 MsG0880044814.01.T01:CDS
CCGAATCTTTGGCCAAGCTT+AGG 0.388638 8:-49527368 MsG0880044814.01.T01:CDS
GGCAGAGAGAAGGATATTAA+TGG 0.390004 8:+49527428 None:intergenic
AGTGGTGTCCAATCCATAAA+TGG 0.392317 8:-49528941 MsG0880044814.01.T01:five_prime_UTR
CGAATCTTTGGCCAAGCTTA+GGG 0.393635 8:-49527367 MsG0880044814.01.T01:CDS
TACGAAGGACCCGCGACATT+CGG 0.394870 8:-49528458 MsG0880044814.01.T01:CDS
TTAAATCTCTTCAAGGAAGA+TGG 0.395265 8:+49527342 None:intergenic
AGCAAAGTCTTTGAAATGTT+CGG 0.401003 8:+49528506 None:intergenic
ACTCTCCTGCAAGCTCTCTC+TGG 0.415568 8:-49527138 MsG0880044814.01.T01:CDS
CGAAGTTATCAAGTTGAGAT+TGG 0.421124 8:+49528415 None:intergenic
TGGGAAGGAAGGAAAGTATA+TGG 0.423492 8:+49528643 None:intergenic
CAATGAGCCTTGTTTCTCAT+AGG 0.428492 8:-49528602 MsG0880044814.01.T01:CDS
CAAAATGACCATTTATGGAT+TGG 0.430315 8:+49528933 None:intergenic
CTCATAGGTATCTTCATCTC+TGG 0.436906 8:-49528587 MsG0880044814.01.T01:CDS
GGCATCGCCAAGTGTGATAT+CGG 0.438417 8:+49527248 None:intergenic
CCTAAGCTTGGCCAAAGATT+CGG 0.439078 8:+49527368 None:intergenic
AGTAAATTTAAATCTCTTCA+AGG 0.440949 8:+49527335 None:intergenic
GGCCAAAGATTCGGTTGAAA+AGG 0.442677 8:+49527377 None:intergenic
CGTGGATCCGCACTGCCGTT+GGG 0.447263 8:-49528374 MsG0880044814.01.T01:CDS
GATACATCACCACATCAATA+TGG 0.457893 8:-49526717 MsG0880044814.01.T01:CDS
TAATTCCAGAGAGAGCTTGC+AGG 0.458090 8:+49527133 None:intergenic
TAATCAGGTGGCGTTTAGCC+TGG 0.458165 8:+49529007 None:intergenic
GATTATTAATATGAGTAATC+AGG 0.463009 8:+49528992 None:intergenic
CTCTTCTCGTCTGAGGATCA+AGG 0.463320 8:-49528324 MsG0880044814.01.T01:CDS
CAAAATTTCTAAGATTGGAC+AGG 0.469145 8:+49527407 None:intergenic
CAAGTTAATTACCTAGAACT+TGG 0.469252 8:+49526442 None:intergenic
CATACATAATATAGAGAAAG+AGG 0.470469 8:-49528808 MsG0880044814.01.T01:five_prime_UTR
CATCGTAGAAATCAAAAGCT+TGG 0.471473 8:+49528556 None:intergenic
AGAGATTTAAATTTACTGTA+GGG 0.479221 8:-49527329 MsG0880044814.01.T01:CDS
ACTCCCACCTGTCCTGGAAA+AGG 0.479801 8:-49529063 None:intergenic
TTCGGCCTCGCCATCGACGC+CGG 0.481816 8:+49528524 None:intergenic
AAGAGATTTAAATTTACTGT+AGG 0.482663 8:-49527330 MsG0880044814.01.T01:CDS
TACAGGATGTTCGCGTGAGA+TGG 0.495639 8:-49526622 MsG0880044814.01.T01:CDS
GTGTGATATCGGCGAGGCTA+AGG 0.496306 8:+49527259 None:intergenic
TCTCTACGGTGAGATCTTTG+TGG 0.502442 8:-49527529 MsG0880044814.01.T01:CDS
ATATCCTTTAAAGTGAATAT+AGG 0.507843 8:+49526644 None:intergenic
ATCCTCAAGGTGGGGCCCAA+CGG 0.507882 8:+49528359 None:intergenic
GAACTTGGTCAAATTTAACT+TGG 0.510908 8:+49526457 None:intergenic
ACGTGGATCCGCACTGCCGT+TGG 0.511251 8:-49528375 MsG0880044814.01.T01:CDS
CCAGGAGAAGAAGAAAATGA+TGG 0.521742 8:-49528729 MsG0880044814.01.T01:CDS
CTTGAGGAAGATTACCTTGG+TGG 0.522119 8:+49528962 None:intergenic
AGTTGTAATCTCTTCAATGA+TGG 0.525654 8:+49527477 None:intergenic
TCGGCCTCGCCATCGACGCC+GGG 0.525835 8:+49528525 None:intergenic
TTCTACGATGAGTACTCTCC+CGG 0.531961 8:-49528543 MsG0880044814.01.T01:CDS
CAGGTGGCGTTTAGCCTGGA+AGG 0.532433 8:+49529011 None:intergenic
GTGCAAGTCCCCAACAAAAG+TGG 0.536088 8:+49527227 None:intergenic
TGCCGTTGGGCCCCACCTTG+AGG 0.539334 8:-49528361 MsG0880044814.01.T01:CDS
CTCTCCCGGCGTCGATGGCG+AGG 0.539871 8:-49528529 MsG0880044814.01.T01:CDS
AGAGAGAGCTTGCAGGAGAG+TGG 0.545504 8:+49527140 None:intergenic
GAGTACTCTCCCGGCGTCGA+TGG 0.545589 8:-49528534 MsG0880044814.01.T01:CDS
TGAATTAGCGCAGTTTATGA+GGG 0.550912 8:-49528875 MsG0880044814.01.T01:five_prime_UTR
TAAAGTGAATATAGGTCAAG+TGG 0.551062 8:+49526652 None:intergenic
ACGCATCTTCCGAATGTCGC+GGG 0.555891 8:+49528449 None:intergenic
GAGAGAGCTTGCAGGAGAGT+GGG 0.567276 8:+49527141 None:intergenic
TCTCGCTCTCTTCTCGTCTG+AGG 0.568024 8:-49528331 MsG0880044814.01.T01:CDS
TGTGGAATTGGAACAATCGT+CGG 0.568307 8:-49527511 MsG0880044814.01.T01:CDS
AGATTGGACAGGCAGAGAGA+AGG 0.579911 8:+49527418 None:intergenic
TGTAATGTACACAGTCTCTA+CGG 0.579931 8:-49527543 MsG0880044814.01.T01:intron
GGAAGATGGAACCCTAAGCT+TGG 0.579963 8:+49527356 None:intergenic
GTTTAGTTGTAATTCAGCAA+TGG 0.580635 8:-49527100 MsG0880044814.01.T01:intron
GAGGTTAGTGCATGATAGGA+TGG 0.583085 8:+49528284 None:intergenic
CAGGAGAAGAAGAAAATGAT+GGG 0.586707 8:-49528728 MsG0880044814.01.T01:CDS
AGTTCAAAACGAAGAAAACC+AGG 0.596394 8:-49528747 MsG0880044814.01.T01:CDS
CCAAGGTAATCTTCCTCAAG+TGG 0.597323 8:-49528959 MsG0880044814.01.T01:five_prime_UTR
CTGAACGCTCTGTTGACACG+TGG 0.601980 8:-49528392 MsG0880044814.01.T01:CDS
CCACTTGAGGAAGATTACCT+TGG 0.604339 8:+49528959 None:intergenic
GAGATGAAGATCCTCAAGGT+GGG 0.607880 8:+49528350 None:intergenic
AAGAGATTACAACTAGACAT+TGG 0.609472 8:-49527468 MsG0880044814.01.T01:CDS
CGGAAGATGCGTCTCTCTTG+CGG 0.610368 8:-49528438 MsG0880044814.01.T01:CDS
TGGCAGACAGTAGATCCCCT+TGG 0.612624 8:+49526477 None:intergenic
GAAGAAGAAAATGATGGGCA+AGG 0.612809 8:-49528723 MsG0880044814.01.T01:CDS
ACCACATCAATATGGTCTCA+CGG 0.613811 8:-49526709 MsG0880044814.01.T01:CDS
TATGGATTGGACACCACTTG+AGG 0.618995 8:+49528946 None:intergenic
AGCCTCGCCGATATCACACT+TGG 0.620507 8:-49527255 MsG0880044814.01.T01:CDS
ACAACTAGACATTGGTAATG+TGG 0.620834 8:-49527460 MsG0880044814.01.T01:CDS
GCGCTAATTCAGATTTAGAG+TGG 0.621492 8:+49528887 None:intergenic
AGGCTAAGGTACTTAAGACC+AGG 0.629957 8:+49527273 None:intergenic
AGATGAAGATCCTCAAGGTG+GGG 0.631714 8:+49528351 None:intergenic
ACAGTTACCTCATGGAGAGG+AGG 0.634577 8:+49528265 None:intergenic
AAAGTGAATATAGGTCAAGT+GGG 0.636598 8:+49526653 None:intergenic
GACGCATCTTCCGAATGTCG+CGG 0.638940 8:+49528448 None:intergenic
AAAACAGTTACCTCATGGAG+AGG 0.640625 8:+49528262 None:intergenic
AGGTGGCGTTTAGCCTGGAA+GGG 0.642916 8:+49529012 None:intergenic
ACGGCTTTCTCTCTTTACGA+AGG 0.645259 8:-49528473 MsG0880044814.01.T01:CDS
AATAATCAGCACAGCCACCA+AGG 0.645745 8:-49528976 MsG0880044814.01.T01:five_prime_UTR
CGAGATGAAGATCCTCAAGG+TGG 0.647298 8:+49528349 None:intergenic
GAGCGAGATGAAGATCCTCA+AGG 0.648810 8:+49528346 None:intergenic
TGCATGATAGGATGGCGAGA+GGG 0.650254 8:+49528292 None:intergenic
GAATTAGCGCAGTTTATGAG+GGG 0.651231 8:-49528874 MsG0880044814.01.T01:five_prime_UTR
TGTTGGGGACTTGCACAGCG+TGG 0.651349 8:-49527220 MsG0880044814.01.T01:CDS
AAAAGGACACTTTCCCATGG+TGG 0.656865 8:-49529046 MsG0880044814.01.T01:five_prime_UTR
TGGAAAAGGACACTTTCCCA+TGG 0.656938 8:-49529049 MsG0880044814.01.T01:five_prime_UTR
TATTAATATGAGTAATCAGG+TGG 0.661252 8:+49528995 None:intergenic
TGGGGACTTGCACAGCGTGG+AGG 0.667537 8:-49527217 MsG0880044814.01.T01:CDS
GCCGTGAGACCATATTGATG+TGG 0.673861 8:+49526708 None:intergenic
GGTGGGGCCCAACGGCAGTG+CGG 0.675625 8:+49528367 None:intergenic
TGTCTTGAGATAGACACACC+TGG 0.677521 8:-49527291 MsG0880044814.01.T01:CDS
GTGCATGATAGGATGGCGAG+AGG 0.679069 8:+49528291 None:intergenic
CGCCAAGTGTGATATCGGCG+AGG 0.680205 8:+49527253 None:intergenic
GAAGATACCTATGAGAAACA+AGG 0.685034 8:+49528595 None:intergenic
GCACTAACCTCCTCTCCATG+AGG 0.685181 8:-49528272 MsG0880044814.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAACTACTAAATATATAA+TGG + Chr8:49528462-49528481 None:intergenic 15.0%
!! TAACAAATAAACATTGAAAA+TGG + Chr8:49527300-49527319 None:intergenic 15.0%
!!! AATGTTTTTTTAGAAAGTTT+AGG + Chr8:49527567-49527586 None:intergenic 15.0%
!!! ATTTTCGAAAAATCTATAAT+AGG + Chr8:49528551-49528570 None:intergenic 15.0%
!!! TTTAACTTAAGTTTTATTGT+GGG - Chr8:49528709-49528728 MsG0880044814.01.T01:CDS 15.0%
!!! TTTTTATTCTAAAATTGTAC+TGG - Chr8:49527812-49527831 MsG0880044814.01.T01:intron 15.0%
!! AAGAGATTTAAATTTACTGT+AGG - Chr8:49528169-49528188 MsG0880044814.01.T01:intron 20.0%
!! AATGGAATATATAATACACA+TGG + Chr8:49528444-49528463 None:intergenic 20.0%
!! AGAGATTTAAATTTACTGTA+GGG - Chr8:49528170-49528189 MsG0880044814.01.T01:intron 20.0%
!! AGTAAATTTAAATCTCTTCA+AGG + Chr8:49528167-49528186 None:intergenic 20.0%
!! GAAAATCTAAAAATCTACAA+TGG - Chr8:49526724-49526743 MsG0880044814.01.T01:intron 20.0%
!! GATTATTAATATGAGTAATC+AGG + Chr8:49526510-49526529 None:intergenic 20.0%
!! TTGTCATATCTTTCATTAAT+TGG + Chr8:49527706-49527725 None:intergenic 20.0%
!!! ATATCCTTTAAAGTGAATAT+AGG + Chr8:49528858-49528877 None:intergenic 20.0%
!!! GTTTAACTTAAGTTTTATTG+TGG - Chr8:49528708-49528727 MsG0880044814.01.T01:CDS 20.0%
!!! TAGATTTTTAGATTTTCTCT+TGG + Chr8:49526721-49526740 None:intergenic 20.0%
!!! TTTATTTGTTACAGAGAAAT+AGG - Chr8:49527309-49527328 MsG0880044814.01.T01:CDS 20.0%
!!! TTTTTCGAAAATGTACTTTT+CGG - Chr8:49528559-49528578 MsG0880044814.01.T01:CDS 20.0%
! AATCTAAAAATCTACAATGG+AGG - Chr8:49526727-49526746 MsG0880044814.01.T01:intron 25.0%
! CATACATAATATAGAGAAAG+AGG - Chr8:49526691-49526710 MsG0880044814.01.T01:CDS 25.0%
! TATTAATATGAGTAATCAGG+TGG + Chr8:49526507-49526526 None:intergenic 25.0%
! TTGACCTATATTCACTTTAA+AGG - Chr8:49528851-49528870 MsG0880044814.01.T01:five_prime_UTR 25.0%
! TTTCATATTTGAGTCATAAC+AGG - Chr8:49527259-49527278 MsG0880044814.01.T01:CDS 25.0%
!! AAATGTACTTTTCGGAATTT+CGG - Chr8:49528567-49528586 MsG0880044814.01.T01:CDS 25.0%
!! ATTCACTTTAAAGGATATAC+AGG - Chr8:49528860-49528879 MsG0880044814.01.T01:five_prime_UTR 25.0%
!!! AGTTCCAAAATTTCTAAGAT+TGG + Chr8:49528100-49528119 None:intergenic 25.0%
AAAATAACTCGAGGAAAACT+AGG - Chr8:49527608-49527627 MsG0880044814.01.T01:intron 30.0%
AAAGTGAATATAGGTCAAGT+GGG + Chr8:49528849-49528868 None:intergenic 30.0%
AAGAGATTACAACTAGACAT+TGG - Chr8:49528031-49528050 MsG0880044814.01.T01:intron 30.0%
ACGTACCAAAAGAGATTATT+AGG - Chr8:49528518-49528537 MsG0880044814.01.T01:CDS 30.0%
AGTTGTAATCTCTTCAATGA+TGG + Chr8:49528025-49528044 None:intergenic 30.0%
ATGAAAAAACAGTTACCTCA+TGG + Chr8:49527245-49527264 None:intergenic 30.0%
CAAAATGACCATTTATGGAT+TGG + Chr8:49526569-49526588 None:intergenic 30.0%
GAACTTGGTCAAATTTAACT+TGG + Chr8:49529045-49529064 None:intergenic 30.0%
GTGGTGTTTGTTTGATTATT+TGG - Chr8:49528735-49528754 MsG0880044814.01.T01:CDS 30.0%
GTTAAATTTGACCAAGTTCT+AGG - Chr8:49529046-49529065 MsG0880044814.01.T01:five_prime_UTR 30.0%
GTTTAGTTGTAATTCAGCAA+TGG - Chr8:49528399-49528418 MsG0880044814.01.T01:CDS 30.0%
TAAAGTGAATATAGGTCAAG+TGG + Chr8:49528850-49528869 None:intergenic 30.0%
TACAGAGAAATAGGTACAAT+GGG - Chr8:49527318-49527337 MsG0880044814.01.T01:CDS 30.0%
TCGAAAATTGTCTGAGAAAA+TGG + Chr8:49528997-49529016 None:intergenic 30.0%
TGATCTGTATGTACATTAGT+TGG - Chr8:49527489-49527508 MsG0880044814.01.T01:CDS 30.0%
TGTTATCTGAAAATAACTCG+AGG - Chr8:49527599-49527618 MsG0880044814.01.T01:intron 30.0%
TTAAATCTCTTCAAGGAAGA+TGG + Chr8:49528160-49528179 None:intergenic 30.0%
TTACAGAGAAATAGGTACAA+TGG - Chr8:49527317-49527336 MsG0880044814.01.T01:CDS 30.0%
TTAGAAAGTTTAGGTGAGTT+GGG + Chr8:49527558-49527577 None:intergenic 30.0%
TTAGACATTCACTTGCAAAA+TGG - Chr8:49527788-49527807 MsG0880044814.01.T01:intron 30.0%
TTGAAGACAATGCTTATTTC+TGG - Chr8:49528935-49528954 MsG0880044814.01.T01:five_prime_UTR 30.0%
TTTAGAAAGTTTAGGTGAGT+TGG + Chr8:49527559-49527578 None:intergenic 30.0%
! ACAATTTTCGAATATGCCAA+GGG - Chr8:49529006-49529025 MsG0880044814.01.T01:five_prime_UTR 30.0%
! AGACAATTAGGAACACTTTT+CGG + Chr8:49528821-49528840 None:intergenic 30.0%
! CTGTCCAATCTTAGAAATTT+TGG - Chr8:49528093-49528112 MsG0880044814.01.T01:intron 30.0%
! GACTACCTAATAATCTCTTT+TGG + Chr8:49528526-49528545 None:intergenic 30.0%
! GCTAGTTATGTTTTGCATTA+TGG - Chr8:49528905-49528924 MsG0880044814.01.T01:five_prime_UTR 30.0%
!! AGCAAAGTCTTTGAAATGTT+CGG + Chr8:49526996-49527015 None:intergenic 30.0%
!! CAAAATTTCTAAGATTGGAC+AGG + Chr8:49528095-49528114 None:intergenic 30.0%
!! TCCATAAATGGTCATTTTGT+AGG - Chr8:49526570-49526589 MsG0880044814.01.T01:CDS 30.0%
!!! GCTTATTTCTGGTTTTTTGT+CGG - Chr8:49528946-49528965 MsG0880044814.01.T01:five_prime_UTR 30.0%
AAGTGGGATACAAGACAATT+AGG + Chr8:49528833-49528852 None:intergenic 35.0%
AGATATGACAAAACTCGCTA+AGG - Chr8:49527715-49527734 MsG0880044814.01.T01:intron 35.0%
AGTTCAAAACGAAGAAAACC+AGG - Chr8:49526752-49526771 MsG0880044814.01.T01:intron 35.0%
ATCAACTTCCACTATTGATG+TGG - Chr8:49527450-49527469 MsG0880044814.01.T01:CDS 35.0%
ATCACCAATTACTACTCCAT+CGG + Chr8:49527636-49527655 None:intergenic 35.0%
ATTATGAGAGCTTGAAGCAT+AGG + Chr8:49528662-49528681 None:intergenic 35.0%
CAGGAGAAGAAGAAAATGAT+GGG - Chr8:49526771-49526790 MsG0880044814.01.T01:intron 35.0%
CATCGTAGAAATCAAAAGCT+TGG + Chr8:49526946-49526965 None:intergenic 35.0%
GAAGATACCTATGAGAAACA+AGG + Chr8:49526907-49526926 None:intergenic 35.0%
GATACATCACCACATCAATA+TGG - Chr8:49528782-49528801 MsG0880044814.01.T01:five_prime_UTR 35.0%
GCCTACAAAATGACCATTTA+TGG + Chr8:49526574-49526593 None:intergenic 35.0%
TCAACTTCCACTATTGATGT+GGG - Chr8:49527451-49527470 MsG0880044814.01.T01:CDS 35.0%
TCTCATAATTCAGAATGCGA+AGG - Chr8:49528673-49528692 MsG0880044814.01.T01:CDS 35.0%
TGAATTAGCGCAGTTTATGA+GGG - Chr8:49526624-49526643 MsG0880044814.01.T01:CDS 35.0%
TGTAATGTACACAGTCTCTA+CGG - Chr8:49527956-49527975 MsG0880044814.01.T01:intron 35.0%
! ACAATGAAAGTTGACTCAGT+TGG - Chr8:49527396-49527415 MsG0880044814.01.T01:CDS 35.0%
! CAATTTTCGAATATGCCAAG+GGG - Chr8:49529007-49529026 MsG0880044814.01.T01:five_prime_UTR 35.0%
! GACAATTTTCGAATATGCCA+AGG - Chr8:49529005-49529024 MsG0880044814.01.T01:five_prime_UTR 35.0%
! TTCCTTTTCAACCGAATCTT+TGG - Chr8:49528120-49528139 MsG0880044814.01.T01:intron 35.0%
!! ACAACTAGACATTGGTAATG+TGG - Chr8:49528039-49528058 MsG0880044814.01.T01:intron 35.0%
!! CGAAGTTATCAAGTTGAGAT+TGG + Chr8:49527087-49527106 None:intergenic 35.0%
!!! GACTTTGCTATTTTCGTCAA+CGG - Chr8:49527007-49527026 MsG0880044814.01.T01:intron 35.0%
!!! GTACACACAGTTGTTTTTGT+GGG + Chr8:49526878-49526897 None:intergenic 35.0%
!!! TAAGTTTTATTGTGGGTGTG+TGG - Chr8:49528716-49528735 MsG0880044814.01.T01:CDS 35.0%
!!! TGTACACACAGTTGTTTTTG+TGG + Chr8:49526879-49526898 None:intergenic 35.0%
AAAACAGTTACCTCATGGAG+AGG + Chr8:49527240-49527259 None:intergenic 40.0%
ACCACATCAATATGGTCTCA+CGG - Chr8:49528790-49528809 MsG0880044814.01.T01:five_prime_UTR 40.0%
ACGTACACAACAACAACAAG+TGG + Chr8:49528502-49528521 None:intergenic 40.0%
AGAGATTCCCACATCAATAG+TGG + Chr8:49527461-49527480 None:intergenic 40.0%
AGTGGTGTCCAATCCATAAA+TGG - Chr8:49526558-49526577 MsG0880044814.01.T01:CDS 40.0%
CAACAACAAGTGGAGATACA+AGG + Chr8:49528492-49528511 None:intergenic 40.0%
CCAGGAGAAGAAGAAAATGA+TGG - Chr8:49526770-49526789 MsG0880044814.01.T01:intron 40.0%
CTCATAGGTATCTTCATCTC+TGG - Chr8:49526912-49526931 MsG0880044814.01.T01:intron 40.0%
CTGAATTAGCGCAGTTTATG+AGG - Chr8:49526623-49526642 MsG0880044814.01.T01:CDS 40.0%
GAATTAGCGCAGTTTATGAG+GGG - Chr8:49526625-49526644 MsG0880044814.01.T01:CDS 40.0%
GATGTATCCTGCAGAAAACA+AGG + Chr8:49528770-49528789 None:intergenic 40.0%
GCGCTAATTCAGATTTAGAG+TGG + Chr8:49526615-49526634 None:intergenic 40.0%
GGCAGAGAGAAGGATATTAA+TGG + Chr8:49528074-49528093 None:intergenic 40.0%
TACAGAAAAGGGTCGAAAGT+AGG + Chr8:49528620-49528639 None:intergenic 40.0%
TGATGTGGGAATCTCTTTGT+TGG - Chr8:49527465-49527484 MsG0880044814.01.T01:CDS 40.0%
TGTGGAATTGGAACAATCGT+CGG - Chr8:49527988-49528007 MsG0880044814.01.T01:intron 40.0%
! AAGTTGATCTCATGACCTTG+CGG + Chr8:49527438-49527457 None:intergenic 40.0%
! CCATCATTTTCTTCTTCTCC+TGG + Chr8:49526773-49526792 None:intergenic 40.0%
! TGGGAAGGAAGGAAAGTATA+TGG + Chr8:49526859-49526878 None:intergenic 40.0%
!! CAATGAGCCTTGTTTCTCAT+AGG - Chr8:49526897-49526916 MsG0880044814.01.T01:intron 40.0%
!! GAAGAAGAAAATGATGGGCA+AGG - Chr8:49526776-49526795 MsG0880044814.01.T01:intron 40.0%
!!! ACACAGTTGTTTTTGTGGGA+AGG + Chr8:49526874-49526893 None:intergenic 40.0%
!!! AGTTGTACCTTGTTTTCTGC+AGG - Chr8:49528760-49528779 MsG0880044814.01.T01:exon 40.0%
!!! AGTTGTTTTTGTGGGAAGGA+AGG + Chr8:49526870-49526889 None:intergenic 40.0%
!!! GGACAGTTTTTTTCCACCAT+GGG + Chr8:49526469-49526488 None:intergenic 40.0%
AAAAGGACACTTTCCCATGG+TGG - Chr8:49526453-49526472 MsG0880044814.01.T01:CDS 45.0%
AATAATCAGCACAGCCACCA+AGG - Chr8:49526523-49526542 MsG0880044814.01.T01:CDS 45.0%
ACATTAGTTGGCACTCACAG+AGG - Chr8:49527501-49527520 MsG0880044814.01.T01:CDS 45.0%
ACGGCTTTCTCTCTTTACGA+AGG - Chr8:49527026-49527045 MsG0880044814.01.T01:intron 45.0%
AGAGGAGGTTAGTGCATGAT+AGG + Chr8:49527222-49527241 None:intergenic 45.0%
AGATGAAGATCCTCAAGGTG+GGG + Chr8:49527151-49527170 None:intergenic 45.0%
AGTTGATCTCATGACCTTGC+GGG + Chr8:49527437-49527456 None:intergenic 45.0%
CATTAGTTGGCACTCACAGA+GGG - Chr8:49527502-49527521 MsG0880044814.01.T01:CDS 45.0%
CCAAGGTAATCTTCCTCAAG+TGG - Chr8:49526540-49526559 MsG0880044814.01.T01:CDS 45.0%
CCACTTGAGGAAGATTACCT+TGG + Chr8:49526543-49526562 None:intergenic 45.0%
CCTAAGCTTGGCCAAAGATT+CGG + Chr8:49528134-49528153 None:intergenic 45.0%
CGAATCTTTGGCCAAGCTTA+GGG - Chr8:49528132-49528151 MsG0880044814.01.T01:intron 45.0%
CGGTGAGATCTTTGTGGAAT+TGG - Chr8:49527976-49527995 MsG0880044814.01.T01:intron 45.0%
CTTGAGGAAGATTACCTTGG+TGG + Chr8:49526540-49526559 None:intergenic 45.0%
GAAGCACGTCGTACAGAAAA+GGG + Chr8:49528631-49528650 None:intergenic 45.0%
GAGATGAAGATCCTCAAGGT+GGG + Chr8:49527152-49527171 None:intergenic 45.0%
GAGGTTAGTGCATGATAGGA+TGG + Chr8:49527218-49527237 None:intergenic 45.0%
GGAAAAAAACTGTCCCTTCC+AGG - Chr8:49526474-49526493 MsG0880044814.01.T01:CDS 45.0%
GGATCCGATGGAGTAGTAAT+TGG - Chr8:49527629-49527648 MsG0880044814.01.T01:intron 45.0%
TAATTCCAGAGAGAGCTTGC+AGG + Chr8:49528369-49528388 None:intergenic 45.0%
TCTCTACGGTGAGATCTTTG+TGG - Chr8:49527970-49527989 MsG0880044814.01.T01:intron 45.0%
TGAAGCACGTCGTACAGAAA+AGG + Chr8:49528632-49528651 None:intergenic 45.0%
TGGAAAAGGACACTTTCCCA+TGG - Chr8:49526450-49526469 MsG0880044814.01.T01:CDS 45.0%
TGTCTTGAGATAGACACACC+TGG - Chr8:49528208-49528227 MsG0880044814.01.T01:intron 45.0%
TTCTACGATGAGTACTCTCC+CGG - Chr8:49526956-49526975 MsG0880044814.01.T01:intron 45.0%
! AGGCTAAGGTACTTAAGACC+AGG + Chr8:49528229-49528248 None:intergenic 45.0%
! GGCCAAAGATTCGGTTGAAA+AGG + Chr8:49528125-49528144 None:intergenic 45.0%
!! TATGGATTGGACACCACTTG+AGG + Chr8:49526556-49526575 None:intergenic 45.0%
!!! ATGGGAAAGTGTCCTTTTCC+AGG + Chr8:49526451-49526470 None:intergenic 45.0%
!!! GGGACAGTTTTTTTCCACCA+TGG + Chr8:49526470-49526489 None:intergenic 45.0%
!!! TTGGCGATGCCACTTTTGTT+GGG - Chr8:49528263-49528282 MsG0880044814.01.T01:intron 45.0%
ACAGTTACCTCATGGAGAGG+AGG + Chr8:49527237-49527256 None:intergenic 50.0%
AGATTGGACAGGCAGAGAGA+AGG + Chr8:49528084-49528103 None:intergenic 50.0%
CCGAATCTTTGGCCAAGCTT+AGG - Chr8:49528131-49528150 MsG0880044814.01.T01:intron 50.0%
CGAGATGAAGATCCTCAAGG+TGG + Chr8:49527153-49527172 None:intergenic 50.0%
CGAGGAAAACTAGGATCCGA+TGG - Chr8:49527617-49527636 MsG0880044814.01.T01:intron 50.0%
CTCTTCTCGTCTGAGGATCA+AGG - Chr8:49527175-49527194 MsG0880044814.01.T01:CDS 50.0%
CTTGCAGGAGAGTGGGTAAA+AGG + Chr8:49528354-49528373 None:intergenic 50.0%
GAGCGAGATGAAGATCCTCA+AGG + Chr8:49527156-49527175 None:intergenic 50.0%
GCCGTGAGACCATATTGATG+TGG + Chr8:49528794-49528813 None:intergenic 50.0%
GGAAGATGGAACCCTAAGCT+TGG + Chr8:49528146-49528165 None:intergenic 50.0%
GGCATCGCCAAGTGTGATAT+CGG + Chr8:49528254-49528273 None:intergenic 50.0%
GTGCAAGTCCCCAACAAAAG+TGG + Chr8:49528275-49528294 None:intergenic 50.0%
TAATCAGGTGGCGTTTAGCC+TGG + Chr8:49526495-49526514 None:intergenic 50.0%
TACAGGATGTTCGCGTGAGA+TGG - Chr8:49528877-49528896 MsG0880044814.01.T01:five_prime_UTR 50.0%
TGCATGATAGGATGGCGAGA+GGG + Chr8:49527210-49527229 None:intergenic 50.0%
! AAGTAGTTGACTCACCCGCA+AGG - Chr8:49527420-49527439 MsG0880044814.01.T01:CDS 50.0%
!!! CTTGGCGATGCCACTTTTGT+TGG - Chr8:49528262-49528281 MsG0880044814.01.T01:intron 50.0%
!!! TGGCGATGCCACTTTTGTTG+GGG - Chr8:49528264-49528283 MsG0880044814.01.T01:intron 50.0%
ACGCATCTTCCGAATGTCGC+GGG + Chr8:49527053-49527072 None:intergenic 55.0%
ACTCTCCTGCAAGCTCTCTC+TGG - Chr8:49528361-49528380 MsG0880044814.01.T01:CDS 55.0%
AGAGAGAGCTTGCAGGAGAG+TGG + Chr8:49528362-49528381 None:intergenic 55.0%
AGCCTCGCCGATATCACACT+TGG - Chr8:49528244-49528263 MsG0880044814.01.T01:intron 55.0%
AGGTGGCGTTTAGCCTGGAA+GGG + Chr8:49526490-49526509 None:intergenic 55.0%
CGGAAGATGCGTCTCTCTTG+CGG - Chr8:49527061-49527080 MsG0880044814.01.T01:intron 55.0%
CTGAACGCTCTGTTGACACG+TGG - Chr8:49527107-49527126 MsG0880044814.01.T01:CDS 55.0%
GACGCATCTTCCGAATGTCG+CGG + Chr8:49527054-49527073 None:intergenic 55.0%
GAGAGAGCTTGCAGGAGAGT+GGG + Chr8:49528361-49528380 None:intergenic 55.0%
GCACTAACCTCCTCTCCATG+AGG - Chr8:49527227-49527246 MsG0880044814.01.T01:CDS 55.0%
GTGCATGATAGGATGGCGAG+AGG + Chr8:49527211-49527230 None:intergenic 55.0%
GTGTGATATCGGCGAGGCTA+AGG + Chr8:49528243-49528262 None:intergenic 55.0%
TACGAAGGACCCGCGACATT+CGG - Chr8:49527041-49527060 MsG0880044814.01.T01:intron 55.0%
TCTCGCTCTCTTCTCGTCTG+AGG - Chr8:49527168-49527187 MsG0880044814.01.T01:CDS 55.0%
TGGCAGACAGTAGATCCCCT+TGG + Chr8:49529025-49529044 None:intergenic 55.0%
! GTTTAGGTGAGTTGGGCTCC+AGG + Chr8:49527551-49527570 None:intergenic 55.0%
ATCCTCAAGGTGGGGCCCAA+CGG + Chr8:49527143-49527162 None:intergenic 60.0%
CAGGTGGCGTTTAGCCTGGA+AGG + Chr8:49526491-49526510 None:intergenic 60.0%
CGCCAAGTGTGATATCGGCG+AGG + Chr8:49528249-49528268 None:intergenic 60.0%
TGTTGGGGACTTGCACAGCG+TGG - Chr8:49528279-49528298 MsG0880044814.01.T01:CDS 60.0%
ACGTGGATCCGCACTGCCGT+TGG - Chr8:49527124-49527143 MsG0880044814.01.T01:CDS 65.0%
CGTGGATCCGCACTGCCGTT+GGG - Chr8:49527125-49527144 MsG0880044814.01.T01:CDS 65.0%
GAGGGACATGCCTTGTCGCG+CGG - Chr8:49527520-49527539 MsG0880044814.01.T01:CDS 65.0%
TGGGGACTTGCACAGCGTGG+AGG - Chr8:49528282-49528301 MsG0880044814.01.T01:CDS 65.0%
! GAGTACTCTCCCGGCGTCGA+TGG - Chr8:49526965-49526984 MsG0880044814.01.T01:intron 65.0%
CCAGGAGCTACCGCGCGACA+AGG + Chr8:49527533-49527552 None:intergenic 70.0%
CCTTGTCGCGCGGTAGCTCC+TGG - Chr8:49527530-49527549 MsG0880044814.01.T01:CDS 70.0%
TGCCGTTGGGCCCCACCTTG+AGG - Chr8:49527138-49527157 MsG0880044814.01.T01:CDS 70.0%
TTCGGCCTCGCCATCGACGC+CGG + Chr8:49526978-49526997 None:intergenic 70.0%
GGTGGGGCCCAACGGCAGTG+CGG + Chr8:49527135-49527154 None:intergenic 75.0%
TCGGCCTCGCCATCGACGCC+GGG + Chr8:49526977-49526996 None:intergenic 75.0%
!! CTCTCCCGGCGTCGATGGCG+AGG - Chr8:49526970-49526989 MsG0880044814.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 49526446 49529075 49526446 ID=MsG0880044814.01;Name=MsG0880044814.01
Chr8 mRNA 49526446 49529075 49526446 ID=MsG0880044814.01.T01;Parent=MsG0880044814.01;Name=MsG0880044814.01.T01;_AED=0.49;_eAED=0.50;_QI=297|0.5|0.66|1|1|1|3|0|416
Chr8 exon 49526446 49526739 49526446 ID=MsG0880044814.01.T01:exon:20681;Parent=MsG0880044814.01.T01
Chr8 exon 49527101 49527551 49527101 ID=MsG0880044814.01.T01:exon:20680;Parent=MsG0880044814.01.T01
Chr8 exon 49528273 49529075 49528273 ID=MsG0880044814.01.T01:exon:20679;Parent=MsG0880044814.01.T01
Chr8 five_prime_UTR 49528779 49529075 49528779 ID=MsG0880044814.01.T01:five_prime_utr;Parent=MsG0880044814.01.T01
Chr8 CDS 49528273 49528778 49528273 ID=MsG0880044814.01.T01:cds;Parent=MsG0880044814.01.T01
Chr8 CDS 49527101 49527551 49527101 ID=MsG0880044814.01.T01:cds;Parent=MsG0880044814.01.T01
Chr8 CDS 49526446 49526739 49526446 ID=MsG0880044814.01.T01:cds;Parent=MsG0880044814.01.T01
Gene Sequence

>MsG0880044814.01.T01

ATGGAGGAAAGTTCAAAACGAAGAAAACCAGGAGAAGAAGAAAATGATGGGCAAGGCAGTAACAGTAACAGTAACAAAGACAGATTAAGCAGTCTGTCAGACTCTCTCTTGTGCCATATACTTTCCTTCCTTCCCACAAAAACAACTGTGTGTACAATGAGCCTTGTTTCTCATAGGTATCTTCATCTCTGGAAATATCTCCAAGCTTTTGATTTCTACGATGAGTACTCTCCCGGCGTCGATGGCGAGGCCGAACATTTCAAAGACTTTGCTATTTTCGTCAACGGCTTTCTCTCTTTACGAAGGACCCGCGACATTCGGAAGATGCGTCTCTCTTGCGGCCAATCTCAACTTGATAACTTCGCTGAACGCTCTGTTGACACGTGGATCCGCACTGCCGTTGGGCCCCACCTTGAGGATCTTCATCTCGCTCTCTTCTCGTCTGAGGATCAAGGCTTCAAACTCCCTCTCGCCATCCTATCATGCACTAACCTCCTCTCCATGAGTCTCTACGGTGAGATCTTTGTGGAATTGGAACAATCGTCGGCTGTTTGTTTACCATCATTGAAGAGATTACAACTAGACATTGGTAATGTGGATGTGAATGCCATTAATATCCTTCTCTCTGCCTGTCCAATCTTAGAAATTTTGGAACTTTCCTTTTCAACCGAATCTTTGGCCAAGCTTAGGGTTCCATCTTCCTTGAAGAGATTTAAATTTACTGTAGGGAATGACATTGAAGTTTGTCTTGAGATAGACACACCTGGTCTTAAGTACCTTAGCCTCGCCGATATCACACTTGGCGATGCCACTTTTGTTGGGGACTTGCACAGCGTGGAGGAAGCATATCTTGATTTAGAGTGCTCTTCTGAAAGTGATTCTGTTGACCTTTTACCCACTCTCCTGCAAGCTCTCTCTGGAATTAAACGTCTAGTGTTTAGTTGTAATTCAGCAATGGATACATCACCACATCAATATGGTCTCACGGCAAAGCCGAAAAGTGTTCCTAATTGTCTTGTATCCCACTTGACCTATATTCACTTTAAAGGATATACAGGATGTTCGCGTGAGATGGAATTTGCTAGTTATGTTTTGCATTATGGACTTGTTTTGAAGACAATGCTTATTTCTGGTTTTTTGTCGGATGAAAGCAAGAAGTCGACAAAGTACCATTTTCTCAGACAATTTTCGAATATGCCAAGGGGATCTACTGTCTGCCAAGTTAAATTTGACCAAGTTCTAGGTAATTAA

Protein sequence

>MsG0880044814.01.T01

MEESSKRRKPGEEENDGQGSNSNSNKDRLSSLSDSLLCHILSFLPTKTTVCTMSLVSHRYLHLWKYLQAFDFYDEYSPGVDGEAEHFKDFAIFVNGFLSLRRTRDIRKMRLSCGQSQLDNFAERSVDTWIRTAVGPHLEDLHLALFSSEDQGFKLPLAILSCTNLLSMSLYGEIFVELEQSSAVCLPSLKRLQLDIGNVDVNAINILLSACPILEILELSFSTESLAKLRVPSSLKRFKFTVGNDIEVCLEIDTPGLKYLSLADITLGDATFVGDLHSVEEAYLDLECSSESDSVDLLPTLLQALSGIKRLVFSCNSAMDTSPHQYGLTAKPKSVPNCLVSHLTYIHFKGYTGCSREMEFASYVLHYGLVLKTMLISGFLSDESKKSTKYHFLRQFSNMPRGSTVCQVKFDQVLGN*