Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013969.01.T01 | AOG66162.1 | 100 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 2.24E-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013969.01.T01 | Q9BBN9 | 93.855 | 179 | 11 | 0 | 1 | 179 | 1 | 179 | 1.52E-114 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013969.01.T01 | A0A1B3SZZ0 | 100.000 | 188 | 0 | 0 | 1 | 188 | 1 | 188 | 1.07e-126 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048313.01 | MsG0380013969.01 | 0.804412 | 2.186879e-49 | 1.126785e-46 |
| MsG0080048560.01 | MsG0380013969.01 | 0.817864 | 2.643080e-52 | 1.947463e-49 |
| MsG0080048689.01 | MsG0380013969.01 | 0.840794 | 7.016779e-58 | 1.010616e-54 |
| MsG0080048690.01 | MsG0380013969.01 | 0.849008 | 4.260688e-60 | 7.966197e-57 |
| MsG0080048691.01 | MsG0380013969.01 | 0.855460 | 6.215368e-62 | 1.436134e-58 |
| MsG0080048692.01 | MsG0380013969.01 | 0.878133 | 3.591889e-69 | 1.853788e-65 |
| MsG0080048693.01 | MsG0380013969.01 | 0.814046 | 1.880567e-51 | 1.248486e-48 |
| MsG0080048694.01 | MsG0380013969.01 | 0.802516 | 5.406495e-49 | 2.653524e-46 |
| MsG0080048695.01 | MsG0380013969.01 | 0.802280 | 6.045523e-49 | 2.949575e-46 |
| MsG0080048697.01 | MsG0380013969.01 | 0.838807 | 2.308788e-57 | 3.127352e-54 |
| MsG0080048698.01 | MsG0380013969.01 | 0.923114 | 4.064855e-89 | 1.597803e-84 |
| MsG0080048699.01 | MsG0380013969.01 | 0.910642 | 1.491176e-82 | 3.074929e-78 |
| MsG0080049076.01 | MsG0380013969.01 | 0.846038 | 2.791699e-59 | 4.743499e-56 |
| MsG0180001110.01 | MsG0380013969.01 | 0.804317 | 2.289643e-49 | 1.176843e-46 |
| MsG0180002226.01 | MsG0380013969.01 | 0.831785 | 1.370938e-55 | 1.503341e-52 |
| MsG0180004301.01 | MsG0380013969.01 | 0.824930 | 6.180483e-54 | 5.552862e-51 |
| MsG0180004434.01 | MsG0380013969.01 | 0.809270 | 2.055761e-50 | 1.201621e-47 |
| MsG0180004435.01 | MsG0380013969.01 | 0.824260 | 8.887195e-54 | 7.831480e-51 |
| MsG0180004505.01 | MsG0380013969.01 | 0.812863 | 3.422496e-51 | 2.200399e-48 |
| MsG0180005791.01 | MsG0380013969.01 | 0.808307 | 3.302538e-50 | 1.881869e-47 |
| MsG0280010625.01 | MsG0380013969.01 | 0.800317 | 1.525607e-48 | 7.082038e-46 |
| MsG0280010695.01 | MsG0380013969.01 | 0.804055 | 2.595928e-49 | 1.325416e-46 |
| MsG0380013448.01 | MsG0380013969.01 | 0.872084 | 4.173822e-67 | 1.723570e-63 |
| MsG0380013887.01 | MsG0380013969.01 | 0.814139 | 1.793472e-51 | 1.193699e-48 |
| MsG0380013888.01 | MsG0380013969.01 | 0.887008 | 2.080174e-72 | 1.520438e-68 |
| MsG0380013889.01 | MsG0380013969.01 | 0.835243 | 1.879974e-56 | 2.285708e-53 |
| MsG0380013892.01 | MsG0380013969.01 | 0.800944 | 1.136403e-48 | 5.359944e-46 |
| MsG0380013914.01 | MsG0380013969.01 | 0.809692 | 1.669199e-50 | 9.866837e-48 |
| MsG0380013915.01 | MsG0380013969.01 | 0.833950 | 3.972785e-56 | 4.646449e-53 |
| MsG0380013916.01 | MsG0380013969.01 | 0.889148 | 3.138856e-73 | 2.502176e-69 |
| MsG0380013917.01 | MsG0380013969.01 | 0.981603 | 5.426707e-153 | 1.435496e-146 |
| MsG0380013918.01 | MsG0380013969.01 | 0.883830 | 3.218084e-71 | 2.072844e-67 |
| MsG0380013919.01 | MsG0380013969.01 | 0.831042 | 2.088153e-55 | 2.239512e-52 |
| MsG0380013920.01 | MsG0380013969.01 | 0.875289 | 3.464608e-68 | 1.609034e-64 |
| MsG0380013921.01 | MsG0380013969.01 | 0.809381 | 1.946262e-50 | 1.141014e-47 |
| MsG0380013923.01 | MsG0380013969.01 | 0.887868 | 9.776448e-73 | 7.397269e-69 |
| MsG0380013926.01 | MsG0380013969.01 | 0.899431 | 1.995056e-77 | 2.466617e-73 |
| MsG0380013928.01 | MsG0380013969.01 | 0.802669 | 5.026656e-49 | 2.476816e-46 |
| MsG0380013929.01 | MsG0380013969.01 | 0.891059 | 5.610549e-74 | 4.843435e-70 |
| MsG0380013931.01 | MsG0380013969.01 | 0.941211 | 6.171225e-101 | 7.118032e-96 |
| MsG0380013932.01 | MsG0380013969.01 | 0.888232 | 7.083157e-73 | 5.441168e-69 |
| MsG0380013935.01 | MsG0380013969.01 | 0.845613 | 3.641931e-59 | 6.103004e-56 |
| MsG0380013938.01 | MsG0380013969.01 | 0.807137 | 5.853932e-50 | 3.235057e-47 |
| MsG0380013940.01 | MsG0380013969.01 | 0.866597 | 2.537837e-65 | 8.602242e-62 |
| MsG0380013941.01 | MsG0380013969.01 | 0.887073 | 1.964232e-72 | 1.439408e-68 |
| MsG0380013942.01 | MsG0380013969.01 | 0.933911 | 9.098874e-96 | 6.665587e-91 |
| MsG0380013943.01 | MsG0380013969.01 | 0.875930 | 2.088576e-68 | 9.937022e-65 |
| MsG0380013944.01 | MsG0380013969.01 | 0.909627 | 4.619381e-82 | 9.072840e-78 |
| MsG0380013945.01 | MsG0380013969.01 | 0.870703 | 1.194476e-66 | 4.690930e-63 |
| MsG0380013947.01 | MsG0380013969.01 | 0.841578 | 4.364716e-58 | 6.441520e-55 |
| MsG0380013948.01 | MsG0380013969.01 | 0.883026 | 6.354207e-71 | 3.961597e-67 |
| MsG0380013949.01 | MsG0380013969.01 | 0.830994 | 2.145587e-55 | 2.297922e-52 |
| MsG0380013951.01 | MsG0380013969.01 | 0.918036 | 2.556364e-86 | 7.620638e-82 |
| MsG0380013952.01 | MsG0380013969.01 | 0.995394 | 7.756109e-216 | 1.076085e-208 |
| MsG0380013953.01 | MsG0380013969.01 | 0.853143 | 2.902707e-61 | 6.209359e-58 |
| MsG0380013954.01 | MsG0380013969.01 | 0.814644 | 1.386838e-51 | 9.357707e-49 |
| MsG0380013956.01 | MsG0380013969.01 | 0.846556 | 2.016261e-59 | 3.483707e-56 |
| MsG0380013957.01 | MsG0380013969.01 | 0.860082 | 2.647230e-63 | 7.149024e-60 |
| MsG0380013959.01 | MsG0380013969.01 | 0.859800 | 3.219700e-63 | 8.609990e-60 |
| MsG0380013961.01 | MsG0380013969.01 | 0.846135 | 2.626100e-59 | 4.475523e-56 |
| MsG0380013962.01 | MsG0380013969.01 | 0.853995 | 1.651950e-61 | 3.636179e-58 |
| MsG0380013964.01 | MsG0380013969.01 | 0.841101 | 5.825904e-58 | 8.470244e-55 |
| MsG0380013966.01 | MsG0380013969.01 | 0.918286 | 1.878498e-86 | 5.674537e-82 |
| MsG0380013967.01 | MsG0380013969.01 | 0.863036 | 3.314111e-64 | 9.907668e-61 |
| MsG0380013968.01 | MsG0380013969.01 | 0.909755 | 4.010185e-82 | 7.919804e-78 |
| MsG0380013969.01 | MsG0380013971.01 | 0.866467 | 2.791048e-65 | 9.416297e-62 |
| MsG0380013969.01 | MsG0380013972.01 | 0.938486 | 6.217039e-99 | 6.018960e-94 |
| MsG0380013969.01 | MsG0380013975.01 | 0.851520 | 8.413717e-61 | 1.707441e-57 |
| MsG0380013969.01 | MsG0380013976.01 | 0.809224 | 2.102806e-50 | 1.227646e-47 |
| MsG0380013969.01 | MsG0380013977.01 | 0.870436 | 1.461742e-66 | 5.685458e-63 |
| MsG0380013969.01 | MsG0380013978.01 | 0.839873 | 1.221182e-57 | 1.709155e-54 |
| MsG0380013969.01 | MsG0380013979.01 | 0.817950 | 2.527695e-52 | 1.866739e-49 |
| MsG0380013969.01 | MsG0380013980.01 | 0.827904 | 1.209272e-54 | 1.183339e-51 |
| MsG0380013969.01 | MsG0380013981.01 | 0.915116 | 8.619793e-85 | 2.216915e-80 |
| MsG0380013969.01 | MsG0380013983.01 | 0.879884 | 8.651257e-70 | 4.771664e-66 |
| MsG0380013969.01 | MsG0380013995.01 | 0.900173 | 9.548143e-78 | 1.219969e-73 |
| MsG0380013969.01 | MsG0380013999.01 | 0.846412 | 2.207937e-59 | 3.797387e-56 |
| MsG0380013969.01 | MsG0380014004.01 | 0.843271 | 1.553055e-58 | 2.417207e-55 |
| MsG0380013969.01 | MsG0380014005.01 | 0.868260 | 7.453873e-66 | 2.679152e-62 |
| MsG0380013969.01 | MsG0380014006.01 | 0.845808 | 3.222815e-59 | 5.435933e-56 |
| MsG0380013969.01 | MsG0380014008.01 | 0.899111 | 2.737953e-77 | 3.336027e-73 |
| MsG0380013969.01 | MsG0380014009.01 | 0.815578 | 8.604423e-52 | 5.955192e-49 |
| MsG0380013969.01 | MsG0380014011.01 | 0.833220 | 6.042539e-56 | 6.913698e-53 |
| MsG0380013969.01 | MsG0380014017.01 | 0.849377 | 3.361671e-60 | 6.360668e-57 |
| MsG0380013969.01 | MsG0380014018.01 | 0.897448 | 1.392093e-76 | 1.573345e-72 |
| MsG0380013969.01 | MsG0380014020.01 | 0.825428 | 4.713126e-54 | 4.294481e-51 |
| MsG0380013969.01 | MsG0380014021.01 | 0.823397 | 1.415738e-53 | 1.217449e-50 |
| MsG0380013969.01 | MsG0380014023.01 | 0.907904 | 3.058701e-81 | 5.540605e-77 |
| MsG0380013969.01 | MsG0380014024.01 | 0.814215 | 1.725959e-51 | 1.151074e-48 |
| MsG0380013969.01 | MsG0380014026.01 | 0.892516 | 1.477756e-74 | 1.355999e-70 |
| MsG0380013969.01 | MsG0380014027.01 | 0.825149 | 5.486141e-54 | 4.959987e-51 |
| MsG0380013969.01 | MsG0380014028.01 | 0.821514 | 3.877207e-53 | 3.160895e-50 |
| MsG0380013969.01 | MsG0380014030.01 | 0.809602 | 1.745029e-50 | 1.029089e-47 |
| MsG0380013969.01 | MsG0380014032.01 | 0.872849 | 2.318224e-67 | 9.847058e-64 |
| MsG0380013969.01 | MsG0380014033.01 | 0.885731 | 6.316309e-72 | 4.385258e-68 |
| MsG0380013969.01 | MsG0380014034.01 | 0.906982 | 8.286336e-81 | 1.438823e-76 |
| MsG0380013969.01 | MsG0380014035.01 | 0.851135 | 1.081178e-60 | 2.166939e-57 |
| MsG0380013969.01 | MsG0380014036.01 | 0.885454 | 8.016775e-72 | 5.505798e-68 |
| MsG0380013969.01 | MsG0380014039.01 | 0.906222 | 1.868363e-80 | 3.132573e-76 |
| MsG0380013969.01 | MsG0380014040.01 | 0.908966 | 9.583629e-82 | 1.823968e-77 |
| MsG0380013969.01 | MsG0380014041.01 | 0.820115 | 8.135251e-53 | 6.380685e-50 |
| MsG0380013969.01 | MsG0380014044.01 | 0.858267 | 9.264370e-63 | 2.350740e-59 |
| MsG0380013969.01 | MsG0380014050.01 | 0.830207 | 3.343548e-55 | 3.499460e-52 |
| MsG0380013969.01 | MsG0380014051.01 | 0.913892 | 3.629715e-84 | 8.776739e-80 |
| MsG0380013969.01 | MsG0380014054.01 | 0.808233 | 3.424382e-50 | 1.947510e-47 |
| MsG0380013969.01 | MsG0380014055.01 | 0.813453 | 2.539866e-51 | 1.659440e-48 |
| MsG0380013969.01 | MsG0380014057.01 | 0.897488 | 1.339953e-76 | 1.517217e-72 |
| MsG0380013969.01 | MsG0380015348.01 | 0.806085 | 9.762323e-50 | 5.251286e-47 |
| MsG0380013969.01 | MsG0380016424.01 | 0.804555 | 2.042453e-49 | 1.056246e-46 |
| MsG0380013969.01 | MsG0380017007.01 | 0.921412 | 3.697281e-88 | 1.321372e-83 |
| MsG0380013969.01 | MsG0480018296.01 | 0.891542 | 3.612300e-74 | 3.180723e-70 |
| MsG0380013969.01 | MsG0480021054.01 | 0.805939 | 1.047816e-49 | 5.615435e-47 |
| MsG0380013969.01 | MsG0580027677.01 | 0.883238 | 5.312804e-71 | 3.340971e-67 |
| MsG0380013969.01 | MsG0680032339.01 | 0.817087 | 3.955622e-52 | 2.853069e-49 |
| MsG0380013969.01 | MsG0780038197.01 | 0.841463 | 4.679262e-58 | 6.881428e-55 |
| MsG0380013969.01 | MsG0780040316.01 | 0.895271 | 1.122995e-75 | 1.157205e-71 |
| MsG0380013969.01 | MsG0780040317.01 | 0.855021 | 8.338922e-62 | 1.898663e-58 |
| MsG0380013969.01 | MsG0780041296.01 | 0.806314 | 8.735407e-50 | 4.726347e-47 |
| MsG0380013969.01 | MsG0880044440.01 | 0.857784 | 1.289018e-62 | 3.218225e-59 |
| MsG0380013969.01 | MsG0880045097.01 | 0.802861 | 4.588069e-49 | 2.271855e-46 |
| MsG0380013969.01 | MsG0880045630.01 | 0.825074 | 5.716361e-54 | 5.156849e-51 |
| MsG0280007042.01 | MsG0380013969.01 | 0.857235 | 1.873621e-62 | 4.593030e-59 |
| MsG0280009733.01 | MsG0380013969.01 | 0.812200 | 4.778971e-51 | 3.019172e-48 |
| MsG0280009971.01 | MsG0380013969.01 | -0.817141 | 3.846667e-52 | 2.778649e-49 |
| MsG0280010137.01 | MsG0380013969.01 | 0.863414 | 2.533204e-64 | 7.672275e-61 |
| MsG0280010143.01 | MsG0380013969.01 | 0.817091 | 3.946236e-52 | 2.846689e-49 |
| MsG0280010144.01 | MsG0380013969.01 | 0.805872 | 1.082521e-49 | 5.791450e-47 |
| MsG0280010145.01 | MsG0380013969.01 | 0.917133 | 7.689261e-86 | 2.184907e-81 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013969.01.T01 | MTR_7g021700 | 99.459 | 185 | 1 | 0 | 1 | 185 | 106 | 290 | 9.61e-122 | 357 |
| MsG0380013969.01.T01 | MTR_6g042200 | 98.315 | 178 | 3 | 0 | 8 | 185 | 383 | 560 | 1.97e-113 | 338 |
| MsG0380013969.01.T01 | MTR_4g006100 | 98.876 | 178 | 2 | 0 | 8 | 185 | 383 | 560 | 8.89e-113 | 342 |
| MsG0380013969.01.T01 | MTR_0002s0150 | 79.144 | 187 | 38 | 1 | 2 | 188 | 411 | 596 | 3.41e-94 | 286 |
| MsG0380013969.01.T01 | MTR_3g113820 | 80.000 | 185 | 8 | 2 | 1 | 185 | 1 | 156 | 1.21e-84 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013969.01.T01 | ATCG01100 | 83.240 | 179 | 30 | 0 | 1 | 179 | 1 | 179 | 3.93e-98 | 288 |
| MsG0380013969.01.T01 | ATMG01275-2 | 42.453 | 106 | 61 | 0 | 47 | 152 | 23 | 128 | 6.69e-23 | 89.4 |
| MsG0380013969.01.T01 | AT2G07785 | 43.878 | 98 | 55 | 0 | 56 | 153 | 2 | 99 | 3.01e-21 | 84.0 |
Find 33 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAATTGATATTACTGATA+TGG | 0.214930 | 3:-48533466 | None:intergenic |
| GGACTTCTTATGTCAGGATA+TGG | 0.218335 | 3:+48533588 | MsG0380013969.01.T01:CDS |
| CCCGAATACGCTGGTCCTTT+TGG | 0.250915 | 3:+48533348 | MsG0380013969.01.T01:CDS |
| GATAAGACACATAGAGTTAA+TGG | 0.275977 | 3:-48533678 | None:intergenic |
| TCCAAAAGGACCAGCGTATT+CGG | 0.297771 | 3:-48533349 | None:intergenic |
| GAATCTTTCAAAGAGGTCTA+TGG | 0.337868 | 3:+48533210 | MsG0380013969.01.T01:CDS |
| AGCTCGTAGACCACCCAAAA+AGG | 0.338031 | 3:-48533628 | None:intergenic |
| AGTTATTCAGTAATTCCTTT+TGG | 0.358580 | 3:+48533492 | MsG0380013969.01.T01:CDS |
| AAGAGAATCTTATTCCATCT+AGG | 0.379925 | 3:+48533412 | MsG0380013969.01.T01:CDS |
| AAGAGGTCTATGGAATTCTA+TGG | 0.381274 | 3:+48533220 | MsG0380013969.01.T01:CDS |
| AAACGAATATCTCCCCTAGA+TGG | 0.392761 | 3:-48533426 | None:intergenic |
| CCAAAAGGACCAGCGTATTC+GGG | 0.397012 | 3:-48533348 | None:intergenic |
| CCCAATACAAGAATCAAAAT+AGG | 0.405056 | 3:-48533252 | None:intergenic |
| CCCATTGGACTTCTTATGTC+AGG | 0.412953 | 3:+48533582 | MsG0380013969.01.T01:CDS |
| GACTTCTTATGTCAGGATAT+GGG | 0.454242 | 3:+48533589 | MsG0380013969.01.T01:CDS |
| AGAGAATCTTATTCCATCTA+GGG | 0.476104 | 3:+48533413 | MsG0380013969.01.T01:CDS |
| GATATTCGTTTATTCAGTAT+CGG | 0.488534 | 3:+48533438 | MsG0380013969.01.T01:CDS |
| ATTTCGAGTATTGCTCCCAT+TGG | 0.490306 | 3:+48533567 | MsG0380013969.01.T01:CDS |
| TAAGTGTACTAGCAATTGTA+TGG | 0.498343 | 3:+48533283 | MsG0380013969.01.T01:CDS |
| AAAACAAAGTTATAGCCAAA+AGG | 0.501030 | 3:-48533507 | None:intergenic |
| TTAGAAAGAGAAATATCTGC+AGG | 0.509446 | 3:+48533306 | MsG0380013969.01.T01:CDS |
| GCAGGGATACAACAGCGTAT+TGG | 0.516727 | 3:+48533324 | MsG0380013969.01.T01:CDS |
| CTCTTTGAAAGATTCCAATC+CGG | 0.519904 | 3:-48533202 | None:intergenic |
| TCCTGACATAAGAAGTCCAA+TGG | 0.542469 | 3:-48533583 | None:intergenic |
| CGGATTGGAATCTTTCAAAG+AGG | 0.552668 | 3:+48533203 | MsG0380013969.01.T01:CDS |
| CCTGACATAAGAAGTCCAAT+GGG | 0.565703 | 3:-48533582 | None:intergenic |
| AGAGCTTGAAGAATTCCAAA+AGG | 0.569368 | 3:-48533363 | None:intergenic |
| ATTGATATTACTGATATGGA+TGG | 0.591695 | 3:-48533462 | None:intergenic |
| TGAAATGATAATTGATACAA+CGG | 0.611394 | 3:+48533155 | None:intergenic |
| GAGAATCTTATTCCATCTAG+GGG | 0.627938 | 3:+48533414 | MsG0380013969.01.T01:CDS |
| ATTCTTCAAGCTCTAGCAGA+CGG | 0.642740 | 3:+48533372 | MsG0380013969.01.T01:CDS |
| TAGAAAGAGAAATATCTGCA+GGG | 0.656230 | 3:+48533307 | MsG0380013969.01.T01:CDS |
| CGTATTGGACCCGAATACGC+TGG | 0.662476 | 3:+48533339 | MsG0380013969.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATAAATATTCCTTTT+TGG | + | Chr3:48533614-48533633 | MsG0380013969.01.T01:CDS | 10.0% |
| !!! | AATAATAAATATTCCTTTTT+GGG | + | Chr3:48533615-48533634 | MsG0380013969.01.T01:CDS | 10.0% |
| !! | TAGAATTGATATTACTGATA+TGG | - | Chr3:48533469-48533488 | None:intergenic | 20.0% |
| !!! | CAAGATATAAATTCTTTTTC+CGG | + | Chr3:48533183-48533202 | MsG0380013969.01.T01:CDS | 20.0% |
| !!! | GTTTTATCTGATTTCAATAT+CGG | + | Chr3:48533525-48533544 | MsG0380013969.01.T01:CDS | 20.0% |
| ! | AAAACAAAGTTATAGCCAAA+AGG | - | Chr3:48533510-48533529 | None:intergenic | 25.0% |
| ! | ATTGATATTACTGATATGGA+TGG | - | Chr3:48533465-48533484 | None:intergenic | 25.0% |
| ! | CGGAAAAAGAATTTATATCT+TGG | - | Chr3:48533185-48533204 | None:intergenic | 25.0% |
| ! | GATATTCGTTTATTCAGTAT+CGG | + | Chr3:48533438-48533457 | MsG0380013969.01.T01:CDS | 25.0% |
| !! | AGTTATTCAGTAATTCCTTT+TGG | + | Chr3:48533492-48533511 | MsG0380013969.01.T01:CDS | 25.0% |
| !! | TATAAATTCTTTTTCCGGAT+TGG | + | Chr3:48533188-48533207 | MsG0380013969.01.T01:CDS | 25.0% |
| !!! | AATAAATATTCCTTTTTGGG+TGG | + | Chr3:48533618-48533637 | MsG0380013969.01.T01:CDS | 25.0% |
| !!! | ACCTATTTTGATTCTTGTAT+TGG | + | Chr3:48533251-48533270 | MsG0380013969.01.T01:CDS | 25.0% |
| !!! | CCTATTTTGATTCTTGTATT+GGG | + | Chr3:48533252-48533271 | MsG0380013969.01.T01:CDS | 25.0% |
| !!! | TCAATATCGGTGTTTTTTTA+TGG | + | Chr3:48533538-48533557 | MsG0380013969.01.T01:CDS | 25.0% |
| AAGAGAATCTTATTCCATCT+AGG | + | Chr3:48533412-48533431 | MsG0380013969.01.T01:CDS | 30.0% | |
| AGAGAATCTTATTCCATCTA+GGG | + | Chr3:48533413-48533432 | MsG0380013969.01.T01:CDS | 30.0% | |
| CCCAATACAAGAATCAAAAT+AGG | - | Chr3:48533255-48533274 | None:intergenic | 30.0% | |
| GATAAGACACATAGAGTTAA+TGG | - | Chr3:48533681-48533700 | None:intergenic | 30.0% | |
| TAAGTGTACTAGCAATTGTA+TGG | + | Chr3:48533283-48533302 | MsG0380013969.01.T01:CDS | 30.0% | |
| TAGAAAGAGAAATATCTGCA+GGG | + | Chr3:48533307-48533326 | MsG0380013969.01.T01:CDS | 30.0% | |
| TTAGAAAGAGAAATATCTGC+AGG | + | Chr3:48533306-48533325 | MsG0380013969.01.T01:CDS | 30.0% | |
| AAGAGGTCTATGGAATTCTA+TGG | + | Chr3:48533220-48533239 | MsG0380013969.01.T01:CDS | 35.0% | |
| AGAGCTTGAAGAATTCCAAA+AGG | - | Chr3:48533366-48533385 | None:intergenic | 35.0% | |
| GAATCTTTCAAAGAGGTCTA+TGG | + | Chr3:48533210-48533229 | MsG0380013969.01.T01:CDS | 35.0% | |
| GACTTCTTATGTCAGGATAT+GGG | + | Chr3:48533589-48533608 | MsG0380013969.01.T01:CDS | 35.0% | |
| GAGAATCTTATTCCATCTAG+GGG | + | Chr3:48533414-48533433 | MsG0380013969.01.T01:CDS | 35.0% | |
| ! | CTCTTTGAAAGATTCCAATC+CGG | - | Chr3:48533205-48533224 | None:intergenic | 35.0% |
| AAACGAATATCTCCCCTAGA+TGG | - | Chr3:48533429-48533448 | None:intergenic | 40.0% | |
| CCTGACATAAGAAGTCCAAT+GGG | - | Chr3:48533585-48533604 | None:intergenic | 40.0% | |
| GGACTTCTTATGTCAGGATA+TGG | + | Chr3:48533588-48533607 | MsG0380013969.01.T01:CDS | 40.0% | |
| TCCTGACATAAGAAGTCCAA+TGG | - | Chr3:48533586-48533605 | None:intergenic | 40.0% | |
| ! | ATTCTTCAAGCTCTAGCAGA+CGG | + | Chr3:48533372-48533391 | MsG0380013969.01.T01:CDS | 40.0% |
| ! | ATTTCGAGTATTGCTCCCAT+TGG | + | Chr3:48533567-48533586 | MsG0380013969.01.T01:CDS | 40.0% |
| ! | CGGATTGGAATCTTTCAAAG+AGG | + | Chr3:48533203-48533222 | MsG0380013969.01.T01:CDS | 40.0% |
| CCCATTGGACTTCTTATGTC+AGG | + | Chr3:48533582-48533601 | MsG0380013969.01.T01:CDS | 45.0% | |
| TCCAAAAGGACCAGCGTATT+CGG | - | Chr3:48533352-48533371 | None:intergenic | 45.0% | |
| AGCTCGTAGACCACCCAAAA+AGG | - | Chr3:48533631-48533650 | None:intergenic | 50.0% | |
| CCAAAAGGACCAGCGTATTC+GGG | - | Chr3:48533351-48533370 | None:intergenic | 50.0% | |
| GCAGGGATACAACAGCGTAT+TGG | + | Chr3:48533324-48533343 | MsG0380013969.01.T01:CDS | 50.0% | |
| CGTATTGGACCCGAATACGC+TGG | + | Chr3:48533339-48533358 | MsG0380013969.01.T01:CDS | 55.0% | |
| ! | CCCGAATACGCTGGTCCTTT+TGG | + | Chr3:48533348-48533367 | MsG0380013969.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48533159 | 48533725 | 48533159 | ID=MsG0380013969.01;Name=MsG0380013969.01 |
| Chr3 | mRNA | 48533159 | 48533725 | 48533159 | ID=MsG0380013969.01.T01;Parent=MsG0380013969.01;Name=MsG0380013969.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|188 |
| Chr3 | exon | 48533159 | 48533725 | 48533159 | ID=MsG0380013969.01.T01:exon:8488;Parent=MsG0380013969.01.T01 |
| Chr3 | CDS | 48533159 | 48533725 | 48533159 | ID=MsG0380013969.01.T01:cds;Parent=MsG0380013969.01.T01 |
| Gene Sequence |
| Protein sequence |
