AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014057.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014057.01.T01 MTR_4g051430 80.602 299 3 3 1 275 115 382 1.51e-163 459
MsG0380014057.01.T01 MTR_3g035710 100.000 142 0 0 134 275 1 142 3.55e-97 281
MsG0380014057.01.T01 MTR_0002s0800 87.970 133 16 0 140 272 1 133 2.06e-80 242
MsG0380014057.01.T01 MTR_0002s0360 87.970 133 16 0 140 272 1 133 2.06e-80 242
MsG0380014057.01.T01 MTR_3g037420 92.366 131 9 1 145 275 7 136 4.35e-78 233
MsG0380014057.01.T01 MTR_3g035700 87.395 119 4 1 1 119 1 108 1.79e-68 208
MsG0380014057.01.T01 MTR_4g047920 88.793 116 2 1 1 116 115 219 1.61e-67 209
MsG0380014057.01.T01 MTR_8g102110 94.000 100 6 0 143 242 13 112 2.52e-58 182
MsG0380014057.01.T01 MTR_0002s0350 93.421 76 5 0 40 115 82 157 8.40e-45 149
MsG0380014057.01.T01 MTR_4g127750 94.118 68 4 0 117 184 73 140 5.93e-36 126
MsG0380014057.01.T01 MTR_2g015360 52.713 129 55 3 132 255 58 185 1.96e-32 118
MsG0380014057.01.T01 MTR_1g075450 97.826 46 1 0 71 116 32 77 1.61e-25 97.4
MsG0380014057.01.T01 MTR_4g047905 97.872 47 1 0 134 180 1 47 3.05e-23 91.7
MsG0380014057.01.T01 MTR_4g124720 70.690 58 16 1 24 81 7 63 5.56e-18 76.6
MsG0380014057.01.T01 MTR_7g076940 29.947 187 118 5 60 234 29 214 1.85e-17 80.1
MsG0380014057.01.T01 MTR_0082s0210 92.683 41 3 0 171 211 36 76 2.26e-16 72.4
MsG0380014057.01.T01 MTR_5g021800 30.481 187 117 5 60 234 29 214 2.29e-16 77.0
MsG0380014057.01.T01 MTR_7g007070 53.448 58 27 0 40 97 21 78 1.29e-12 65.9
MsG0380014057.01.T01 MTR_8g038480 90.323 31 3 0 242 272 14 44 2.58e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014057.01.T01 ATCG00830 89.091 275 29 1 1 275 1 274 1.34e-174 483
MsG0380014057.01.T01 ATCG01310 89.091 275 29 1 1 275 1 274 1.34e-174 483
MsG0380014057.01.T01 AT2G44065 50.394 127 57 3 134 255 68 193 7.96e-31 114
MsG0380014057.01.T01 AT2G44065 50.394 127 57 3 134 255 68 193 7.96e-31 114
MsG0380014057.01.T01 AT2G44065 50.394 127 57 3 134 255 68 193 7.96e-31 114
MsG0380014057.01.T01 AT3G51190 33.498 203 106 7 51 234 23 215 3.94e-20 87.4
MsG0380014057.01.T01 AT2G18020 32.653 196 117 6 51 234 22 214 1.76e-18 83.2
MsG0380014057.01.T01 AT4G36130 31.633 196 119 6 51 234 22 214 4.49e-18 82.0

Find 76 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACGAAATCGTTTGATTTA+TGG 0.058286 3:-48749704 MsG0380014057.01.T01:CDS
ATTGGAGATACCATTGTTTA+TGG 0.155576 3:-48749452 MsG0380014057.01.T01:intron
CAAATGTGTGCATTTCTATT+AGG 0.202673 3:+48749533 None:intergenic
CACCCCAGAGGGGCTATAAT+TGG 0.246821 3:-48749470 MsG0380014057.01.T01:CDS
CACATTTGTCTCATACACTA+TGG 0.292657 3:-48749518 MsG0380014057.01.T01:CDS
AATCAAACGATTTCGTGAAT+TGG 0.298760 3:+48749709 None:intergenic
ATCTCCAATTATAGCCCCTC+TGG 0.329356 3:+48749466 None:intergenic
AAATGTGTGCATTTCTATTA+GGG 0.347000 3:+48749534 None:intergenic
TGTTATTTCTATGTTATGTA+TGG 0.373684 3:+48748671 MsG0380014058.01.T01:CDS
CCACCATGTGGATGGTCTAC+AGG 0.374827 3:+48748411 MsG0380014058.01.T01:CDS
CGGCTCCATTGCGGCTGCTC+GGG 0.393938 3:+48749750 None:intergenic
GTTATGTATGGCCGTGCCTA+AGG 0.403150 3:+48748683 MsG0380014058.01.T01:CDS
GCAACATTAAAATTACCTTC+TGG 0.409057 3:-48748576 MsG0380014057.01.T01:CDS
ACGGCTCCATTGCGGCTGCT+CGG 0.431946 3:+48749749 None:intergenic
TAATGATTCCTCTGGCATTA+CGG 0.437582 3:+48749660 None:intergenic
CTACTTCTTCTTCCAAGTGC+AGG 0.444988 3:+48748333 None:intergenic
GATTGCAAAAGAGGGGAAAT+CGG 0.451584 3:-48748598 MsG0380014057.01.T01:CDS
GGATTTCACTTGACTGTCTA+CGG 0.459141 3:+48749730 None:intergenic
CCTTGGGGTTATCCTGCACT+TGG 0.490373 3:-48748345 MsG0380014057.01.T01:CDS
CATCCACATGGTGGTGGTGA+AGG 0.493903 3:-48748402 MsG0380014057.01.T01:CDS
GGACAGCATCATTGTGGTAA+AGG 0.498881 3:-48749683 MsG0380014057.01.T01:CDS
AGCGAAACTGATTGCAAAAG+AGG 0.500228 3:-48748607 MsG0380014057.01.T01:CDS
ACCTAACCAACGTTTAGCTC+CGG 0.500488 3:+48748467 MsG0380014058.01.T01:CDS
GGATAACCCCAAGGAGTTGA+GGG 0.501467 3:+48748354 None:intergenic
CCCTGCGGTAATGATTCCTC+TGG 0.504675 3:+48749652 None:intergenic
AGCTTGTACAGTTTGGGAAG+GGG 0.511574 3:-48748748 MsG0380014057.01.T01:intron
ACATTTGTCTCATACACTAT+GGG 0.513287 3:-48749517 MsG0380014057.01.T01:CDS
TCTCCAATTATAGCCCCTCT+GGG 0.516695 3:+48749467 None:intergenic
ACATGGTGGTGGTGAAGGGA+GGG 0.520822 3:-48748397 MsG0380014057.01.T01:CDS
CATAGAAATAACACTTGGAA+AGG 0.521855 3:-48748661 MsG0380014057.01.T01:CDS
GCCGGAGCTAAACGTTGGTT+AGG 0.522087 3:-48748468 MsG0380014057.01.T01:CDS
CACATGGTGGTGGTGAAGGG+AGG 0.525514 3:-48748398 MsG0380014057.01.T01:CDS
CTTCACCACCACCATGTGGA+TGG 0.526187 3:+48748403 MsG0380014058.01.T01:CDS
ATAACTACTCCTCTTACTAC+AGG 0.526817 3:+48748438 MsG0380014058.01.T01:CDS
CACCATGTGGATGGTCTACA+GGG 0.532724 3:+48748412 MsG0380014058.01.T01:CDS
GCCAGAGGAATCATTACCGC+AGG 0.533740 3:-48749653 MsG0380014057.01.T01:CDS
GGTAAGCGTCCTGTAGTAAG+AGG 0.536554 3:-48748447 MsG0380014057.01.T01:CDS
ATAGAAATAACACTTGGAAA+GGG 0.539892 3:-48748660 MsG0380014057.01.T01:CDS
TCAGCAACAGTAGGACAAGT+AGG 0.541112 3:-48748525 MsG0380014057.01.T01:CDS
GGTGAAGGGAGGGCCCCGAT+TGG 0.541114 3:-48748387 MsG0380014057.01.T01:CDS
GGCCGTGCCTAAGGGCATAT+CGG 0.541386 3:+48748692 MsG0380014058.01.T01:CDS
GGACAATTAGCTAGAGCAGC+TGG 0.543739 3:-48748636 MsG0380014057.01.T01:CDS
ATCCACATGGTGGTGGTGAA+GGG 0.544348 3:-48748401 MsG0380014057.01.T01:CDS
TTATGTATGGCCGTGCCTAA+GGG 0.546055 3:+48748684 MsG0380014058.01.T01:CDS
GTAGGACAAGTAGGGAATGT+TGG 0.550877 3:-48748516 MsG0380014057.01.T01:CDS
AAGCTTGTACAGTTTGGGAA+GGG 0.552657 3:-48748749 MsG0380014057.01.T01:intron
GCGAAACTGATTGCAAAAGA+GGG 0.554830 3:-48748606 MsG0380014057.01.T01:CDS
ACCGCAGGGCATAGAGGAGG+AGG 0.556349 3:-48749638 MsG0380014057.01.T01:CDS
ATTAAAATTACCTTCTGGAG+AGG 0.560627 3:-48748571 MsG0380014057.01.T01:CDS
GAAATAACACTTGGAAAGGG+TGG 0.563823 3:-48748657 MsG0380014057.01.T01:CDS
CATAACATAGAAATAACACT+TGG 0.566932 3:-48748666 MsG0380014057.01.T01:CDS
AGGATAACCCCAAGGAGTTG+AGG 0.567413 3:+48748353 None:intergenic
AACCGATATGCCCTTAGGCA+CGG 0.569174 3:-48748694 MsG0380014057.01.T01:CDS
TCTATCCCGAGCAGCCGCAA+TGG 0.570116 3:-48749755 MsG0380014057.01.T01:CDS
ATCATTACCGCAGGGCATAG+AGG 0.577847 3:-48749644 MsG0380014057.01.T01:CDS
GAAGCTTGTACAGTTTGGGA+AGG 0.581877 3:-48748750 MsG0380014057.01.T01:intron
CTCCCTTCACCACCACCATG+TGG 0.585580 3:+48748399 MsG0380014058.01.T01:CDS
CAGCAACAGTAGGACAAGTA+GGG 0.586255 3:-48748524 MsG0380014057.01.T01:CDS
ATTTATGGACAGCATCATTG+TGG 0.617850 3:-48749689 MsG0380014057.01.T01:CDS
TGTCTCATACACTATGGGGA+TGG 0.617924 3:-48749512 MsG0380014057.01.T01:CDS
ATCAAACGGACCTCTCCAGA+AGG 0.618237 3:+48748561 MsG0380014058.01.T01:CDS
ACTTCAACCGATATGCCCTT+AGG 0.622846 3:-48748699 MsG0380014057.01.T01:CDS
GTAGACCATCCACATGGTGG+TGG 0.631075 3:-48748408 MsG0380014057.01.T01:CDS
AACTTCTGTACCATAAACAA+TGG 0.646481 3:+48749442 None:intergenic
CGAAACTGATTGCAAAAGAG+GGG 0.648445 3:-48748605 MsG0380014057.01.T01:CDS
CCAGAGGAATCATTACCGCA+GGG 0.662404 3:-48749652 MsG0380014057.01.T01:CDS
GCAGAGCCGGAGCTAAACGT+TGG 0.663271 3:-48748473 MsG0380014057.01.T01:CDS
ATTACCGCAGGGCATAGAGG+AGG 0.670448 3:-48749641 MsG0380014057.01.T01:CDS
CTCCAATTATAGCCCCTCTG+GGG 0.673812 3:+48749468 None:intergenic
ACCTCCTCCTCTATGCCCTG+CGG 0.680554 3:+48749637 None:intergenic
CATTTGTCTCATACACTATG+GGG 0.680620 3:-48749516 MsG0380014057.01.T01:CDS
CCAAGTGCAGGATAACCCCA+AGG 0.680892 3:+48748345 None:intergenic
GACTGTCTACGGCTCCATTG+CGG 0.686909 3:+48749741 None:intergenic
GGTAAAGGCCGTAATGCCAG+AGG 0.689775 3:-48749668 MsG0380014057.01.T01:CDS
AACCCTGTAGACCATCCACA+TGG 0.689961 3:-48748414 MsG0380014057.01.T01:CDS
CCTGTAGACCATCCACATGG+TGG 0.727826 3:-48748411 MsG0380014057.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCATATTACTATATCTTTA+GGG + Chr3:48748852-48748871 None:intergenic 20.0%
!!! TGTTATTTCTATGTTATGTA+TGG + Chr3:48749392-48749411 None:intergenic 20.0%
! AAATGTGTGCATTTCTATTA+GGG + Chr3:48748529-48748548 MsG0380014058.01.T01:CDS 25.0%
! ACAGAAGTTCCTATAAAAAT+GGG - Chr3:48748632-48748651 MsG0380014057.01.T01:CDS 25.0%
! ACCCTAAAGATATAGTAATA+TGG - Chr3:48748848-48748867 MsG0380014057.01.T01:intron 25.0%
! ATAGAAATAACACTTGGAAA+GGG - Chr3:48749400-48749419 MsG0380014057.01.T01:intron 25.0%
! ATATCATAACATGACTGATT+TGG - Chr3:48749152-48749171 MsG0380014057.01.T01:intron 25.0%
! CATAACATAGAAATAACACT+TGG - Chr3:48749394-48749413 MsG0380014057.01.T01:intron 25.0%
! CGGAATGAAAAAGATATATA+TGG - Chr3:48748479-48748498 MsG0380014057.01.T01:CDS 25.0%
! CTCCATATTACTATATCTTT+AGG + Chr3:48748853-48748872 None:intergenic 25.0%
! GTTATTCACATTTCATTTGA+TGG - Chr3:48748946-48748965 MsG0380014057.01.T01:intron 25.0%
! TACAGAAGTTCCTATAAAAA+TGG - Chr3:48748631-48748650 MsG0380014057.01.T01:CDS 25.0%
!!! AGCAGTTTTTTGATATCAAA+CGG + Chr3:48749516-48749535 None:intergenic 25.0%
!!! GAACTATTGATTTACGTAAT+TGG - Chr3:48748681-48748700 MsG0380014057.01.T01:CDS 25.0%
AACAGAAAACTGAAGAGTAA+CGG - Chr3:48748782-48748801 MsG0380014057.01.T01:intron 30.0%
AACTTCTGTACCATAAACAA+TGG + Chr3:48748621-48748640 MsG0380014058.01.T01:CDS 30.0%
AATCAAACGATTTCGTGAAT+TGG + Chr3:48748354-48748373 None:intergenic 30.0%
ACATTTGTCTCATACACTAT+GGG - Chr3:48748543-48748562 MsG0380014057.01.T01:CDS 30.0%
ATATTATATACCCACTCATG+TGG - Chr3:48749190-48749209 MsG0380014057.01.T01:intron 30.0%
ATTGGAGATACCATTGTTTA+TGG - Chr3:48748608-48748627 MsG0380014057.01.T01:CDS 30.0%
CAAATGTGTGCATTTCTATT+AGG + Chr3:48748530-48748549 MsG0380014058.01.T01:CDS 30.0%
CATAGAAATAACACTTGGAA+AGG - Chr3:48749399-48749418 MsG0380014057.01.T01:intron 30.0%
CATGAGTGGGTATATAATAT+AGG + Chr3:48749190-48749209 None:intergenic 30.0%
CGTAATTTCATAGAGTCATT+CGG - Chr3:48749069-48749088 MsG0380014057.01.T01:intron 30.0%
GAAGTAACCAATTAGGTTTA+CGG - Chr3:48748703-48748722 MsG0380014057.01.T01:CDS 30.0%
GATTATGATATCTATACAGC+TGG + Chr3:48749262-48749281 None:intergenic 30.0%
GCAACATTAAAATTACCTTC+TGG - Chr3:48749484-48749503 MsG0380014057.01.T01:CDS 30.0%
GGAGTAAACCAAAAAAGTTT+GGG - Chr3:48749565-48749584 MsG0380014057.01.T01:CDS 30.0%
GTAATTGGAAGTAACCAATT+AGG - Chr3:48748696-48748715 MsG0380014057.01.T01:CDS 30.0%
GTTATGATATTCTACATCCT+AGG + Chr3:48749142-48749161 None:intergenic 30.0%
TGGAGTAAACCAAAAAAGTT+TGG - Chr3:48749564-48749583 MsG0380014057.01.T01:CDS 30.0%
! ACCGTAAAATAGATTTTCGA+CGG - Chr3:48748459-48748478 MsG0380014057.01.T01:CDS 30.0%
! ATTAAAATTACCTTCTGGAG+AGG - Chr3:48749489-48749508 MsG0380014057.01.T01:CDS 30.0%
! TCACGAAATCGTTTGATTTA+TGG - Chr3:48748356-48748375 MsG0380014057.01.T01:CDS 30.0%
! TCCGTCGAAAATCTATTTTA+CGG + Chr3:48748463-48748482 MsG0380014058.01.T01:CDS 30.0%
AAAAAAACCCTCAACTCCTT+GGG - Chr3:48749699-48749718 MsG0380014057.01.T01:CDS 35.0%
ATAACTACTCCTCTTACTAC+AGG + Chr3:48749625-48749644 None:intergenic 35.0%
ATTTATGGACAGCATCATTG+TGG - Chr3:48748371-48748390 MsG0380014057.01.T01:CDS 35.0%
CACATTTGTCTCATACACTA+TGG - Chr3:48748542-48748561 MsG0380014057.01.T01:CDS 35.0%
CATTTGTCTCATACACTATG+GGG - Chr3:48748544-48748563 MsG0380014057.01.T01:CDS 35.0%
TAATGATTCCTCTGGCATTA+CGG + Chr3:48748403-48748422 MsG0380014058.01.T01:CDS 35.0%
! ACATTTCATTTGATGGTCAG+AGG - Chr3:48748953-48748972 MsG0380014057.01.T01:intron 35.0%
! AGATATATTTTACACCCCAG+AGG - Chr3:48748578-48748597 MsG0380014057.01.T01:CDS 35.0%
! ATATATTTTACACCCCAGAG+GGG - Chr3:48748580-48748599 MsG0380014057.01.T01:CDS 35.0%
! CTCCTTGTTTCGTTTCAAAA+GGG - Chr3:48748912-48748931 MsG0380014057.01.T01:intron 35.0%
! GATATATTTTACACCCCAGA+GGG - Chr3:48748579-48748598 MsG0380014057.01.T01:CDS 35.0%
! TCCTTGTTTCGTTTCAAAAG+GGG - Chr3:48748913-48748932 MsG0380014057.01.T01:intron 35.0%
! TTGCTACTTACACATAGTAC+AGG + Chr3:48749049-48749068 None:intergenic 35.0%
!! AGACATTTCTATTTTTCCCC+GGG + Chr3:48749017-48749036 None:intergenic 35.0%
!! AGGGCATTTCCCATTTTTAT+AGG + Chr3:48748644-48748663 MsG0380014058.01.T01:CDS 35.0%
!! GAGACATTTCTATTTTTCCC+CGG + Chr3:48749018-48749037 None:intergenic 35.0%
!!! AGGGTTTTTTTCTACCAATC+GGG + Chr3:48749690-48749709 None:intergenic 35.0%
!!! GAGGGTTTTTTTCTACCAAT+CGG + Chr3:48749691-48749710 None:intergenic 35.0%
AAAAAACCCTCAACTCCTTG+GGG - Chr3:48749700-48749719 MsG0380014057.01.T01:CDS 40.0%
AAAAACTGCTCAGCAACAGT+AGG - Chr3:48749526-48749545 MsG0380014057.01.T01:CDS 40.0%
AAGCTTGTACAGTTTGGGAA+GGG - Chr3:48749311-48749330 MsG0380014057.01.T01:intron 40.0%
ACACATAGTACAGGTAACGT+AGG + Chr3:48749040-48749059 None:intergenic 40.0%
AGCGAAACTGATTGCAAAAG+AGG - Chr3:48749453-48749472 MsG0380014057.01.T01:CDS 40.0%
ATAGTTCAAACCGCACTCAA+AGG + Chr3:48748668-48748687 MsG0380014058.01.T01:CDS 40.0%
ATGAAGGAACAGAAAGACCT+AGG - Chr3:48749122-48749141 MsG0380014057.01.T01:intron 40.0%
CAAGCTTCTTCCAAAGCATA+CGG + Chr3:48749298-48749317 None:intergenic 40.0%
CGAAACCTATCAATCGATCA+CGG - Chr3:48748726-48748745 MsG0380014057.01.T01:CDS 40.0%
CGAAACTGATTGCAAAAGAG+GGG - Chr3:48749455-48749474 MsG0380014057.01.T01:CDS 40.0%
GAAAAAAACCCTCAACTCCT+TGG - Chr3:48749698-48749717 MsG0380014057.01.T01:CDS 40.0%
GAAATAACACTTGGAAAGGG+TGG - Chr3:48749403-48749422 MsG0380014057.01.T01:intron 40.0%
GAAGAACATAAGCCAGATGA+AGG - Chr3:48749106-48749125 MsG0380014057.01.T01:intron 40.0%
GATTGCAAAAGAGGGGAAAT+CGG - Chr3:48749462-48749481 MsG0380014057.01.T01:CDS 40.0%
GCAAATTGAAAGCTAAGCAG+TGG - Chr3:48748975-48748994 MsG0380014057.01.T01:intron 40.0%
GCGAAACTGATTGCAAAAGA+GGG - Chr3:48749454-48749473 MsG0380014057.01.T01:CDS 40.0%
GGAAGAAGCTTGTACAGTTT+GGG - Chr3:48749306-48749325 MsG0380014057.01.T01:intron 40.0%
GGATTTCACTTGACTGTCTA+CGG + Chr3:48748333-48748352 None:intergenic 40.0%
TCCAATTTGAGTACCTCTAC+AGG - Chr3:48748750-48748769 MsG0380014057.01.T01:intron 40.0%
TGGAAGAAGCTTGTACAGTT+TGG - Chr3:48749305-48749324 MsG0380014057.01.T01:intron 40.0%
TGTTGAAGTCTATCCTGTAG+AGG + Chr3:48748766-48748785 None:intergenic 40.0%
! ATAACGAAGTACCACATGAG+TGG + Chr3:48749204-48749223 None:intergenic 40.0%
! CCTTGTTTCGTTTCAAAAGG+GGG - Chr3:48748914-48748933 MsG0380014057.01.T01:intron 40.0%
! GCTCCTTGTTTCGTTTCAAA+AGG - Chr3:48748911-48748930 MsG0380014057.01.T01:intron 40.0%
! GGTAATTCTAAAGATTCCCC+CGG - Chr3:48748996-48749015 MsG0380014057.01.T01:intron 40.0%
! GTAATTCTAAAGATTCCCCC+GGG - Chr3:48748997-48749016 MsG0380014057.01.T01:intron 40.0%
! TAACGAAGTACCACATGAGT+GGG + Chr3:48749203-48749222 None:intergenic 40.0%
! TAATTCTAAAGATTCCCCCG+GGG - Chr3:48748998-48749017 MsG0380014057.01.T01:intron 40.0%
!! ACATTTCTATTTTTCCCCGG+GGG + Chr3:48749015-48749034 None:intergenic 40.0%
!! GACATTTCTATTTTTCCCCG+GGG + Chr3:48749016-48749035 None:intergenic 40.0%
!! TCCTGTAGAGGTACTCAAAT+TGG + Chr3:48748754-48748773 None:intergenic 40.0%
!!! GGGTTTTTTTCTACCAATCG+GGG + Chr3:48749689-48749708 None:intergenic 40.0%
AAATGCCCTACCTTTGAGTG+CGG - Chr3:48748655-48748674 MsG0380014057.01.T01:CDS 45.0%
ACTTCAACCGATATGCCCTT+AGG - Chr3:48749361-48749380 MsG0380014057.01.T01:intron 45.0%
AGCTTGTACAGTTTGGGAAG+GGG - Chr3:48749312-48749331 MsG0380014057.01.T01:intron 45.0%
ATCCAGAAAGCCGTATGCTT+TGG - Chr3:48749285-48749304 MsG0380014057.01.T01:intron 45.0%
ATCTCCAATTATAGCCCCTC+TGG + Chr3:48748597-48748616 MsG0380014058.01.T01:CDS 45.0%
CAAAAAAGTTTGGGCAGAGC+CGG - Chr3:48749574-48749593 MsG0380014057.01.T01:CDS 45.0%
CAGCAACAGTAGGACAAGTA+GGG - Chr3:48749536-48749555 MsG0380014057.01.T01:CDS 45.0%
CTACTTCTTCTTCCAAGTGC+AGG + Chr3:48749730-48749749 None:intergenic 45.0%
GAAGCTTGTACAGTTTGGGA+AGG - Chr3:48749310-48749329 MsG0380014057.01.T01:intron 45.0%
GGACAGCATCATTGTGGTAA+AGG - Chr3:48748377-48748396 MsG0380014057.01.T01:CDS 45.0%
GGTCTTTCTGTTCCTTCATC+TGG + Chr3:48749121-48749140 None:intergenic 45.0%
GGTTTCGCCGTAAACCTAAT+TGG + Chr3:48748713-48748732 MsG0380014058.01.T01:CDS 45.0%
GTAGGACAAGTAGGGAATGT+TGG - Chr3:48749544-48749563 MsG0380014057.01.T01:CDS 45.0%
GTTTCAAAAGGGGGAAGACA+CGG - Chr3:48748923-48748942 MsG0380014057.01.T01:intron 45.0%
TCAAACCGCACTCAAAGGTA+GGG + Chr3:48748663-48748682 MsG0380014058.01.T01:CDS 45.0%
TCAGCAACAGTAGGACAAGT+AGG - Chr3:48749535-48749554 MsG0380014057.01.T01:CDS 45.0%
TCTCCAATTATAGCCCCTCT+GGG + Chr3:48748596-48748615 MsG0380014058.01.T01:CDS 45.0%
TGGATCCGTGATCGATTGAT+AGG + Chr3:48748734-48748753 None:intergenic 45.0%
TGTCTCATACACTATGGGGA+TGG - Chr3:48748548-48748567 MsG0380014057.01.T01:CDS 45.0%
TTATGTATGGCCGTGCCTAA+GGG + Chr3:48749379-48749398 None:intergenic 45.0%
TTCAAACCGCACTCAAAGGT+AGG + Chr3:48748664-48748683 MsG0380014058.01.T01:CDS 45.0%
TTCCAAAGCATACGGCTTTC+TGG + Chr3:48749290-48749309 None:intergenic 45.0%
TTTCAAAAGGGGGAAGACAC+GGG - Chr3:48748924-48748943 MsG0380014057.01.T01:intron 45.0%
! ACCTAACCAACGTTTAGCTC+CGG + Chr3:48749596-48749615 None:intergenic 45.0%
!!! CCCCCTTTTGAAACGAAACA+AGG + Chr3:48748917-48748936 None:intergenic 45.0%
AACCCTGTAGACCATCCACA+TGG - Chr3:48749646-48749665 MsG0380014057.01.T01:CDS 50.0%
AACCGATATGCCCTTAGGCA+CGG - Chr3:48749366-48749385 MsG0380014057.01.T01:intron 50.0%
AGGATAACCCCAAGGAGTTG+AGG + Chr3:48749710-48749729 None:intergenic 50.0%
ATCAAACGGACCTCTCCAGA+AGG + Chr3:48749502-48749521 None:intergenic 50.0%
ATCATTACCGCAGGGCATAG+AGG - Chr3:48748416-48748435 MsG0380014057.01.T01:CDS 50.0%
CACCATGTGGATGGTCTACA+GGG + Chr3:48749651-48749670 None:intergenic 50.0%
CCAGAGGAATCATTACCGCA+GGG - Chr3:48748408-48748427 MsG0380014057.01.T01:CDS 50.0%
CTCCAATTATAGCCCCTCTG+GGG + Chr3:48748595-48748614 MsG0380014058.01.T01:CDS 50.0%
GGACAATTAGCTAGAGCAGC+TGG - Chr3:48749424-48749443 MsG0380014057.01.T01:intron 50.0%
GGATAACCCCAAGGAGTTGA+GGG + Chr3:48749709-48749728 None:intergenic 50.0%
GGTAAGCGTCCTGTAGTAAG+AGG - Chr3:48749613-48749632 MsG0380014057.01.T01:CDS 50.0%
GTTATGTATGGCCGTGCCTA+AGG + Chr3:48749380-48749399 None:intergenic 50.0%
!! ATCCACATGGTGGTGGTGAA+GGG - Chr3:48749659-48749678 MsG0380014057.01.T01:CDS 50.0%
!!! CGGCTCTGCCCAAACTTTTT+TGG + Chr3:48749576-48749595 None:intergenic 50.0%
ATTACCGCAGGGCATAGAGG+AGG - Chr3:48748419-48748438 MsG0380014057.01.T01:CDS 55.0%
CACCCCAGAGGGGCTATAAT+TGG - Chr3:48748590-48748609 MsG0380014057.01.T01:CDS 55.0%
CCAAGTGCAGGATAACCCCA+AGG + Chr3:48749718-48749737 None:intergenic 55.0%
CCACCATGTGGATGGTCTAC+AGG + Chr3:48749652-48749671 None:intergenic 55.0%
CCCTGCGGTAATGATTCCTC+TGG + Chr3:48748411-48748430 MsG0380014058.01.T01:CDS 55.0%
CCTGTAGACCATCCACATGG+TGG - Chr3:48749649-48749668 MsG0380014057.01.T01:CDS 55.0%
CCTTGGGGTTATCCTGCACT+TGG - Chr3:48749715-48749734 MsG0380014057.01.T01:CDS 55.0%
CTTCACCACCACCATGTGGA+TGG + Chr3:48749660-48749679 None:intergenic 55.0%
GACTGTCTACGGCTCCATTG+CGG + Chr3:48748322-48748341 None:intergenic 55.0%
GCCAGAGGAATCATTACCGC+AGG - Chr3:48748407-48748426 MsG0380014057.01.T01:CDS 55.0%
GGTAAAGGCCGTAATGCCAG+AGG - Chr3:48748392-48748411 MsG0380014057.01.T01:CDS 55.0%
GTAGACCATCCACATGGTGG+TGG - Chr3:48749652-48749671 MsG0380014057.01.T01:CDS 55.0%
! GCCGGAGCTAAACGTTGGTT+AGG - Chr3:48749592-48749611 MsG0380014057.01.T01:CDS 55.0%
!! ACATGGTGGTGGTGAAGGGA+GGG - Chr3:48749663-48749682 MsG0380014057.01.T01:CDS 55.0%
!! AGGAGCGCTTCGTGTTCTGT+CGG + Chr3:48748897-48748916 None:intergenic 55.0%
!! CATCCACATGGTGGTGGTGA+AGG - Chr3:48749658-48749677 MsG0380014057.01.T01:CDS 55.0%
ACCTCCTCCTCTATGCCCTG+CGG + Chr3:48748426-48748445 MsG0380014058.01.T01:CDS 60.0%
CTCCCTTCACCACCACCATG+TGG + Chr3:48749664-48749683 None:intergenic 60.0%
GCAGAGCCGGAGCTAAACGT+TGG - Chr3:48749587-48749606 MsG0380014057.01.T01:CDS 60.0%
TCTATCCCGAGCAGCCGCAA+TGG - Chr3:48748305-48748324 MsG0380014057.01.T01:CDS 60.0%
! GGCCGTGCCTAAGGGCATAT+CGG + Chr3:48749371-48749390 None:intergenic 60.0%
!! CACATGGTGGTGGTGAAGGG+AGG - Chr3:48749662-48749681 MsG0380014057.01.T01:CDS 60.0%
ACCGCAGGGCATAGAGGAGG+AGG - Chr3:48748422-48748441 MsG0380014057.01.T01:CDS 65.0%
ACGGCTCCATTGCGGCTGCT+CGG + Chr3:48748314-48748333 None:intergenic 65.0%
CGGCTCCATTGCGGCTGCTC+GGG + Chr3:48748313-48748332 None:intergenic 70.0%
GGTGAAGGGAGGGCCCCGAT+TGG - Chr3:48749673-48749692 MsG0380014057.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48748281 48749801 48748281 ID=MsG0380014057.01;Name=MsG0380014057.01
Chr3 mRNA 48748281 48749801 48748281 ID=MsG0380014057.01.T01;Parent=MsG0380014057.01;Name=MsG0380014057.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|275
Chr3 exon 48749453 48749801 48749453 ID=MsG0380014057.01.T01:exon:9275;Parent=MsG0380014057.01.T01
Chr3 exon 48748281 48748759 48748281 ID=MsG0380014057.01.T01:exon:9274;Parent=MsG0380014057.01.T01
Chr3 CDS 48749453 48749801 48749453 ID=MsG0380014057.01.T01:cds;Parent=MsG0380014057.01.T01
Chr3 CDS 48748281 48748759 48748281 ID=MsG0380014057.01.T01:cds;Parent=MsG0380014057.01.T01
Gene Sequence

>MsG0380014057.01.T01

ATGGCGATACATTTATACAAAACTTCTATCCCGAGCAGCCGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTATGGACAGCATCATTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGAGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGGAATGAAAAAGATATATATGGTCGAATCGTAACTATCGAATACGACCCTAATAGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTATGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTAGGACAAGTAGGGAATGTTGGAGTAAACCAAAAAAGTTTGGGCAGAGCCGGAGCTAAACGTTGGTTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCACATGGTGGTGGTGAAGGGAGGGCCCCGATTGGTAGAAAAAAACCCTCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAAGAATAAATATAGTGATAATTTGATTCTTCGTCGACGTAGTAAATAG

Protein sequence

>MsG0380014057.01.T01

MAIHLYKTSIPSSRNGAVDSQVKSNSRNRLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIVYVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRSRKKNKYSDNLILRRRSK*