Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014057.01.T01 | YP_009327909.1 | 94.755 | 286 | 4 | 1 | 1 | 275 | 1 | 286 | 0 | 535 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014057.01.T01 | P06379 | 91.636 | 275 | 22 | 1 | 1 | 275 | 1 | 274 | 5.79E-180 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014057.01.T01 | A0A1B3SZY8 | 94.755 | 286 | 4 | 1 | 1 | 275 | 1 | 286 | 0.0 | 535 |
MsG0380014057.01.T01 | A0A1J0I0F0 | 94.755 | 286 | 4 | 1 | 1 | 275 | 1 | 286 | 0.0 | 535 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048691.01 | MsG0380014057.01 | 0.801065 | 1.073618e-48 | 5.079360e-46 |
MsG0080048692.01 | MsG0380014057.01 | 0.841007 | 6.167731e-58 | 8.941199e-55 |
MsG0080048698.01 | MsG0380014057.01 | 0.891346 | 4.318237e-74 | 3.772464e-70 |
MsG0080048699.01 | MsG0380014057.01 | 0.884373 | 2.027541e-71 | 1.334138e-67 |
MsG0180001507.01 | MsG0380014057.01 | 0.810238 | 1.272841e-50 | 7.632266e-48 |
MsG0180002226.01 | MsG0380014057.01 | 0.824114 | 9.617659e-54 | 8.440391e-51 |
MsG0380013448.01 | MsG0380014057.01 | 0.812962 | 3.255863e-51 | 2.098847e-48 |
MsG0380013888.01 | MsG0380014057.01 | 0.845739 | 3.365786e-59 | 5.664351e-56 |
MsG0380013890.01 | MsG0380014057.01 | 0.836003 | 1.206934e-56 | 1.501182e-53 |
MsG0380013892.01 | MsG0380014057.01 | 0.822385 | 2.436799e-53 | 2.036683e-50 |
MsG0380013915.01 | MsG0380014057.01 | 0.805973 | 1.030398e-49 | 5.526991e-47 |
MsG0380013916.01 | MsG0380014057.01 | 0.878167 | 3.496208e-69 | 1.806917e-65 |
MsG0380013917.01 | MsG0380014057.01 | 0.880433 | 5.511392e-70 | 3.105148e-66 |
MsG0380013918.01 | MsG0380014057.01 | 0.838625 | 2.573936e-57 | 3.467377e-54 |
MsG0380013920.01 | MsG0380014057.01 | 0.891470 | 3.858027e-74 | 3.387134e-70 |
MsG0380013923.01 | MsG0380014057.01 | 0.904675 | 9.581645e-80 | 1.498164e-75 |
MsG0380013926.01 | MsG0380014057.01 | 0.861313 | 1.119823e-63 | 3.155565e-60 |
MsG0380013929.01 | MsG0380014057.01 | 0.845746 | 3.349798e-59 | 5.638770e-56 |
MsG0380013931.01 | MsG0380014057.01 | 0.876350 | 1.498038e-68 | 7.238973e-65 |
MsG0380013932.01 | MsG0380014057.01 | 0.839138 | 1.895502e-57 | 2.593490e-54 |
MsG0380013940.01 | MsG0380014057.01 | 0.809645 | 1.707811e-50 | 1.008302e-47 |
MsG0380013941.01 | MsG0380014057.01 | 0.866367 | 3.003757e-65 | 1.009809e-61 |
MsG0380013942.01 | MsG0380014057.01 | 0.900109 | 1.017854e-77 | 1.296810e-73 |
MsG0380013943.01 | MsG0380014057.01 | 0.810051 | 1.396538e-50 | 8.333414e-48 |
MsG0380013944.01 | MsG0380014057.01 | 0.936587 | 1.367416e-97 | 1.180154e-92 |
MsG0380013947.01 | MsG0380014057.01 | 0.820343 | 7.210877e-53 | 5.690656e-50 |
MsG0380013948.01 | MsG0380014057.01 | 0.872761 | 2.480493e-67 | 1.050358e-63 |
MsG0380013949.01 | MsG0380014057.01 | 0.826345 | 2.855445e-54 | 2.670816e-51 |
MsG0380013951.01 | MsG0380014057.01 | 0.893230 | 7.630350e-75 | 7.209720e-71 |
MsG0380013952.01 | MsG0380014057.01 | 0.894455 | 2.427709e-75 | 2.415867e-71 |
MsG0380013959.01 | MsG0380014057.01 | 0.872703 | 2.594070e-67 | 1.096260e-63 |
MsG0380013961.01 | MsG0380014057.01 | 0.855384 | 6.539705e-62 | 1.507300e-58 |
MsG0380013962.01 | MsG0380014057.01 | 0.855314 | 6.857891e-62 | 1.576852e-58 |
MsG0380013964.01 | MsG0380014057.01 | 0.804298 | 2.310157e-49 | 1.186850e-46 |
MsG0380013966.01 | MsG0380014057.01 | 0.862885 | 3.689613e-64 | 1.097580e-60 |
MsG0380013968.01 | MsG0380014057.01 | 0.888641 | 4.929024e-73 | 3.849956e-69 |
MsG0380013969.01 | MsG0380014057.01 | 0.897488 | 1.339953e-76 | 1.517217e-72 |
MsG0380013972.01 | MsG0380014057.01 | 0.899276 | 2.325111e-77 | 2.854491e-73 |
MsG0380013981.01 | MsG0380014057.01 | 0.892837 | 1.098464e-74 | 1.020716e-70 |
MsG0380013983.01 | MsG0380014057.01 | 0.824631 | 7.270990e-54 | 6.476982e-51 |
MsG0380013995.01 | MsG0380014057.01 | 0.887042 | 2.019441e-72 | 1.477923e-68 |
MsG0380014008.01 | MsG0380014057.01 | 0.929421 | 7.118929e-93 | 3.970501e-88 |
MsG0380014009.01 | MsG0380014057.01 | 0.813763 | 2.170629e-51 | 1.430031e-48 |
MsG0380014011.01 | MsG0380014057.01 | 0.921005 | 6.227465e-88 | 2.174535e-83 |
MsG0380014018.01 | MsG0380014057.01 | 0.880801 | 4.068090e-70 | 2.325894e-66 |
MsG0380014023.01 | MsG0380014057.01 | 0.837000 | 6.727635e-57 | 8.623212e-54 |
MsG0380014026.01 | MsG0380014057.01 | 0.871200 | 8.190836e-67 | 3.275657e-63 |
MsG0380014027.01 | MsG0380014057.01 | 0.847090 | 1.440410e-59 | 2.532189e-56 |
MsG0380014033.01 | MsG0380014057.01 | 0.839359 | 1.661388e-57 | 2.288861e-54 |
MsG0380014034.01 | MsG0380014057.01 | 0.818970 | 1.484096e-52 | 1.127467e-49 |
MsG0380014035.01 | MsG0380014057.01 | 0.800110 | 1.680408e-48 | 7.759525e-46 |
MsG0380014036.01 | MsG0380014057.01 | 0.849604 | 2.906645e-60 | 5.539717e-57 |
MsG0380014039.01 | MsG0380014057.01 | 0.916159 | 2.489322e-85 | 6.751414e-81 |
MsG0380014040.01 | MsG0380014057.01 | 0.931917 | 1.855018e-94 | 1.208174e-89 |
MsG0380014041.01 | MsG0380014057.01 | 0.816136 | 6.459794e-52 | 4.539760e-49 |
MsG0380014044.01 | MsG0380014057.01 | 0.948268 | 1.321771e-106 | 2.443775e-101 |
MsG0380014046.01 | MsG0380014057.01 | 0.809866 | 1.531252e-50 | 9.092903e-48 |
MsG0380014051.01 | MsG0380014057.01 | 0.879092 | 1.651792e-69 | 8.840535e-66 |
MsG0380014054.01 | MsG0380014057.01 | 0.816048 | 6.758415e-52 | 4.738385e-49 |
MsG0380014055.01 | MsG0380014057.01 | 0.808412 | 3.137175e-50 | 1.792539e-47 |
MsG0380014057.01 | MsG0380017007.01 | 0.910954 | 1.050140e-82 | 2.200517e-78 |
MsG0380014057.01 | MsG0480018296.01 | 0.847513 | 1.103049e-59 | 1.965350e-56 |
MsG0380014057.01 | MsG0480020052.01 | 0.808886 | 2.484224e-50 | 1.437130e-47 |
MsG0380014057.01 | MsG0480023810.01 | -0.802578 | 5.250402e-49 | 2.581001e-46 |
MsG0380014057.01 | MsG0580027677.01 | 0.806549 | 7.795323e-50 | 4.243114e-47 |
MsG0380014057.01 | MsG0780040316.01 | 0.851398 | 9.109446e-61 | 1.841521e-57 |
MsG0380014057.01 | MsG0780040317.01 | 0.803592 | 3.239320e-49 | 1.634351e-46 |
MsG0280007042.01 | MsG0380014057.01 | 0.801246 | 9.855402e-49 | 4.683953e-46 |
MsG0280009733.01 | MsG0380014057.01 | 0.826068 | 3.322774e-54 | 3.083420e-51 |
MsG0280010145.01 | MsG0380014057.01 | 0.891547 | 3.597256e-74 | 3.167969e-70 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014057.01.T01 | MTR_4g051430 | 80.602 | 299 | 3 | 3 | 1 | 275 | 115 | 382 | 1.51e-163 | 459 |
MsG0380014057.01.T01 | MTR_3g035710 | 100.000 | 142 | 0 | 0 | 134 | 275 | 1 | 142 | 3.55e-97 | 281 |
MsG0380014057.01.T01 | MTR_0002s0800 | 87.970 | 133 | 16 | 0 | 140 | 272 | 1 | 133 | 2.06e-80 | 242 |
MsG0380014057.01.T01 | MTR_0002s0360 | 87.970 | 133 | 16 | 0 | 140 | 272 | 1 | 133 | 2.06e-80 | 242 |
MsG0380014057.01.T01 | MTR_3g037420 | 92.366 | 131 | 9 | 1 | 145 | 275 | 7 | 136 | 4.35e-78 | 233 |
MsG0380014057.01.T01 | MTR_3g035700 | 87.395 | 119 | 4 | 1 | 1 | 119 | 1 | 108 | 1.79e-68 | 208 |
MsG0380014057.01.T01 | MTR_4g047920 | 88.793 | 116 | 2 | 1 | 1 | 116 | 115 | 219 | 1.61e-67 | 209 |
MsG0380014057.01.T01 | MTR_8g102110 | 94.000 | 100 | 6 | 0 | 143 | 242 | 13 | 112 | 2.52e-58 | 182 |
MsG0380014057.01.T01 | MTR_0002s0350 | 93.421 | 76 | 5 | 0 | 40 | 115 | 82 | 157 | 8.40e-45 | 149 |
MsG0380014057.01.T01 | MTR_4g127750 | 94.118 | 68 | 4 | 0 | 117 | 184 | 73 | 140 | 5.93e-36 | 126 |
MsG0380014057.01.T01 | MTR_2g015360 | 52.713 | 129 | 55 | 3 | 132 | 255 | 58 | 185 | 1.96e-32 | 118 |
MsG0380014057.01.T01 | MTR_1g075450 | 97.826 | 46 | 1 | 0 | 71 | 116 | 32 | 77 | 1.61e-25 | 97.4 |
MsG0380014057.01.T01 | MTR_4g047905 | 97.872 | 47 | 1 | 0 | 134 | 180 | 1 | 47 | 3.05e-23 | 91.7 |
MsG0380014057.01.T01 | MTR_4g124720 | 70.690 | 58 | 16 | 1 | 24 | 81 | 7 | 63 | 5.56e-18 | 76.6 |
MsG0380014057.01.T01 | MTR_7g076940 | 29.947 | 187 | 118 | 5 | 60 | 234 | 29 | 214 | 1.85e-17 | 80.1 |
MsG0380014057.01.T01 | MTR_0082s0210 | 92.683 | 41 | 3 | 0 | 171 | 211 | 36 | 76 | 2.26e-16 | 72.4 |
MsG0380014057.01.T01 | MTR_5g021800 | 30.481 | 187 | 117 | 5 | 60 | 234 | 29 | 214 | 2.29e-16 | 77.0 |
MsG0380014057.01.T01 | MTR_7g007070 | 53.448 | 58 | 27 | 0 | 40 | 97 | 21 | 78 | 1.29e-12 | 65.9 |
MsG0380014057.01.T01 | MTR_8g038480 | 90.323 | 31 | 3 | 0 | 242 | 272 | 14 | 44 | 2.58e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014057.01.T01 | ATCG00830 | 89.091 | 275 | 29 | 1 | 1 | 275 | 1 | 274 | 1.34e-174 | 483 |
MsG0380014057.01.T01 | ATCG01310 | 89.091 | 275 | 29 | 1 | 1 | 275 | 1 | 274 | 1.34e-174 | 483 |
MsG0380014057.01.T01 | AT2G44065 | 50.394 | 127 | 57 | 3 | 134 | 255 | 68 | 193 | 7.96e-31 | 114 |
MsG0380014057.01.T01 | AT2G44065 | 50.394 | 127 | 57 | 3 | 134 | 255 | 68 | 193 | 7.96e-31 | 114 |
MsG0380014057.01.T01 | AT2G44065 | 50.394 | 127 | 57 | 3 | 134 | 255 | 68 | 193 | 7.96e-31 | 114 |
MsG0380014057.01.T01 | AT3G51190 | 33.498 | 203 | 106 | 7 | 51 | 234 | 23 | 215 | 3.94e-20 | 87.4 |
MsG0380014057.01.T01 | AT2G18020 | 32.653 | 196 | 117 | 6 | 51 | 234 | 22 | 214 | 1.76e-18 | 83.2 |
MsG0380014057.01.T01 | AT4G36130 | 31.633 | 196 | 119 | 6 | 51 | 234 | 22 | 214 | 4.49e-18 | 82.0 |
Find 76 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACGAAATCGTTTGATTTA+TGG | 0.058286 | 3:-48749704 | MsG0380014057.01.T01:CDS |
ATTGGAGATACCATTGTTTA+TGG | 0.155576 | 3:-48749452 | MsG0380014057.01.T01:intron |
CAAATGTGTGCATTTCTATT+AGG | 0.202673 | 3:+48749533 | None:intergenic |
CACCCCAGAGGGGCTATAAT+TGG | 0.246821 | 3:-48749470 | MsG0380014057.01.T01:CDS |
CACATTTGTCTCATACACTA+TGG | 0.292657 | 3:-48749518 | MsG0380014057.01.T01:CDS |
AATCAAACGATTTCGTGAAT+TGG | 0.298760 | 3:+48749709 | None:intergenic |
ATCTCCAATTATAGCCCCTC+TGG | 0.329356 | 3:+48749466 | None:intergenic |
AAATGTGTGCATTTCTATTA+GGG | 0.347000 | 3:+48749534 | None:intergenic |
TGTTATTTCTATGTTATGTA+TGG | 0.373684 | 3:+48748671 | MsG0380014058.01.T01:CDS |
CCACCATGTGGATGGTCTAC+AGG | 0.374827 | 3:+48748411 | MsG0380014058.01.T01:CDS |
CGGCTCCATTGCGGCTGCTC+GGG | 0.393938 | 3:+48749750 | None:intergenic |
GTTATGTATGGCCGTGCCTA+AGG | 0.403150 | 3:+48748683 | MsG0380014058.01.T01:CDS |
GCAACATTAAAATTACCTTC+TGG | 0.409057 | 3:-48748576 | MsG0380014057.01.T01:CDS |
ACGGCTCCATTGCGGCTGCT+CGG | 0.431946 | 3:+48749749 | None:intergenic |
TAATGATTCCTCTGGCATTA+CGG | 0.437582 | 3:+48749660 | None:intergenic |
CTACTTCTTCTTCCAAGTGC+AGG | 0.444988 | 3:+48748333 | None:intergenic |
GATTGCAAAAGAGGGGAAAT+CGG | 0.451584 | 3:-48748598 | MsG0380014057.01.T01:CDS |
GGATTTCACTTGACTGTCTA+CGG | 0.459141 | 3:+48749730 | None:intergenic |
CCTTGGGGTTATCCTGCACT+TGG | 0.490373 | 3:-48748345 | MsG0380014057.01.T01:CDS |
CATCCACATGGTGGTGGTGA+AGG | 0.493903 | 3:-48748402 | MsG0380014057.01.T01:CDS |
GGACAGCATCATTGTGGTAA+AGG | 0.498881 | 3:-48749683 | MsG0380014057.01.T01:CDS |
AGCGAAACTGATTGCAAAAG+AGG | 0.500228 | 3:-48748607 | MsG0380014057.01.T01:CDS |
ACCTAACCAACGTTTAGCTC+CGG | 0.500488 | 3:+48748467 | MsG0380014058.01.T01:CDS |
GGATAACCCCAAGGAGTTGA+GGG | 0.501467 | 3:+48748354 | None:intergenic |
CCCTGCGGTAATGATTCCTC+TGG | 0.504675 | 3:+48749652 | None:intergenic |
AGCTTGTACAGTTTGGGAAG+GGG | 0.511574 | 3:-48748748 | MsG0380014057.01.T01:intron |
ACATTTGTCTCATACACTAT+GGG | 0.513287 | 3:-48749517 | MsG0380014057.01.T01:CDS |
TCTCCAATTATAGCCCCTCT+GGG | 0.516695 | 3:+48749467 | None:intergenic |
ACATGGTGGTGGTGAAGGGA+GGG | 0.520822 | 3:-48748397 | MsG0380014057.01.T01:CDS |
CATAGAAATAACACTTGGAA+AGG | 0.521855 | 3:-48748661 | MsG0380014057.01.T01:CDS |
GCCGGAGCTAAACGTTGGTT+AGG | 0.522087 | 3:-48748468 | MsG0380014057.01.T01:CDS |
CACATGGTGGTGGTGAAGGG+AGG | 0.525514 | 3:-48748398 | MsG0380014057.01.T01:CDS |
CTTCACCACCACCATGTGGA+TGG | 0.526187 | 3:+48748403 | MsG0380014058.01.T01:CDS |
ATAACTACTCCTCTTACTAC+AGG | 0.526817 | 3:+48748438 | MsG0380014058.01.T01:CDS |
CACCATGTGGATGGTCTACA+GGG | 0.532724 | 3:+48748412 | MsG0380014058.01.T01:CDS |
GCCAGAGGAATCATTACCGC+AGG | 0.533740 | 3:-48749653 | MsG0380014057.01.T01:CDS |
GGTAAGCGTCCTGTAGTAAG+AGG | 0.536554 | 3:-48748447 | MsG0380014057.01.T01:CDS |
ATAGAAATAACACTTGGAAA+GGG | 0.539892 | 3:-48748660 | MsG0380014057.01.T01:CDS |
TCAGCAACAGTAGGACAAGT+AGG | 0.541112 | 3:-48748525 | MsG0380014057.01.T01:CDS |
GGTGAAGGGAGGGCCCCGAT+TGG | 0.541114 | 3:-48748387 | MsG0380014057.01.T01:CDS |
GGCCGTGCCTAAGGGCATAT+CGG | 0.541386 | 3:+48748692 | MsG0380014058.01.T01:CDS |
GGACAATTAGCTAGAGCAGC+TGG | 0.543739 | 3:-48748636 | MsG0380014057.01.T01:CDS |
ATCCACATGGTGGTGGTGAA+GGG | 0.544348 | 3:-48748401 | MsG0380014057.01.T01:CDS |
TTATGTATGGCCGTGCCTAA+GGG | 0.546055 | 3:+48748684 | MsG0380014058.01.T01:CDS |
GTAGGACAAGTAGGGAATGT+TGG | 0.550877 | 3:-48748516 | MsG0380014057.01.T01:CDS |
AAGCTTGTACAGTTTGGGAA+GGG | 0.552657 | 3:-48748749 | MsG0380014057.01.T01:intron |
GCGAAACTGATTGCAAAAGA+GGG | 0.554830 | 3:-48748606 | MsG0380014057.01.T01:CDS |
ACCGCAGGGCATAGAGGAGG+AGG | 0.556349 | 3:-48749638 | MsG0380014057.01.T01:CDS |
ATTAAAATTACCTTCTGGAG+AGG | 0.560627 | 3:-48748571 | MsG0380014057.01.T01:CDS |
GAAATAACACTTGGAAAGGG+TGG | 0.563823 | 3:-48748657 | MsG0380014057.01.T01:CDS |
CATAACATAGAAATAACACT+TGG | 0.566932 | 3:-48748666 | MsG0380014057.01.T01:CDS |
AGGATAACCCCAAGGAGTTG+AGG | 0.567413 | 3:+48748353 | None:intergenic |
AACCGATATGCCCTTAGGCA+CGG | 0.569174 | 3:-48748694 | MsG0380014057.01.T01:CDS |
TCTATCCCGAGCAGCCGCAA+TGG | 0.570116 | 3:-48749755 | MsG0380014057.01.T01:CDS |
ATCATTACCGCAGGGCATAG+AGG | 0.577847 | 3:-48749644 | MsG0380014057.01.T01:CDS |
GAAGCTTGTACAGTTTGGGA+AGG | 0.581877 | 3:-48748750 | MsG0380014057.01.T01:intron |
CTCCCTTCACCACCACCATG+TGG | 0.585580 | 3:+48748399 | MsG0380014058.01.T01:CDS |
CAGCAACAGTAGGACAAGTA+GGG | 0.586255 | 3:-48748524 | MsG0380014057.01.T01:CDS |
ATTTATGGACAGCATCATTG+TGG | 0.617850 | 3:-48749689 | MsG0380014057.01.T01:CDS |
TGTCTCATACACTATGGGGA+TGG | 0.617924 | 3:-48749512 | MsG0380014057.01.T01:CDS |
ATCAAACGGACCTCTCCAGA+AGG | 0.618237 | 3:+48748561 | MsG0380014058.01.T01:CDS |
ACTTCAACCGATATGCCCTT+AGG | 0.622846 | 3:-48748699 | MsG0380014057.01.T01:CDS |
GTAGACCATCCACATGGTGG+TGG | 0.631075 | 3:-48748408 | MsG0380014057.01.T01:CDS |
AACTTCTGTACCATAAACAA+TGG | 0.646481 | 3:+48749442 | None:intergenic |
CGAAACTGATTGCAAAAGAG+GGG | 0.648445 | 3:-48748605 | MsG0380014057.01.T01:CDS |
CCAGAGGAATCATTACCGCA+GGG | 0.662404 | 3:-48749652 | MsG0380014057.01.T01:CDS |
GCAGAGCCGGAGCTAAACGT+TGG | 0.663271 | 3:-48748473 | MsG0380014057.01.T01:CDS |
ATTACCGCAGGGCATAGAGG+AGG | 0.670448 | 3:-48749641 | MsG0380014057.01.T01:CDS |
CTCCAATTATAGCCCCTCTG+GGG | 0.673812 | 3:+48749468 | None:intergenic |
ACCTCCTCCTCTATGCCCTG+CGG | 0.680554 | 3:+48749637 | None:intergenic |
CATTTGTCTCATACACTATG+GGG | 0.680620 | 3:-48749516 | MsG0380014057.01.T01:CDS |
CCAAGTGCAGGATAACCCCA+AGG | 0.680892 | 3:+48748345 | None:intergenic |
GACTGTCTACGGCTCCATTG+CGG | 0.686909 | 3:+48749741 | None:intergenic |
GGTAAAGGCCGTAATGCCAG+AGG | 0.689775 | 3:-48749668 | MsG0380014057.01.T01:CDS |
AACCCTGTAGACCATCCACA+TGG | 0.689961 | 3:-48748414 | MsG0380014057.01.T01:CDS |
CCTGTAGACCATCCACATGG+TGG | 0.727826 | 3:-48748411 | MsG0380014057.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCCATATTACTATATCTTTA+GGG | + | Chr3:48748852-48748871 | None:intergenic | 20.0% |
!!! | TGTTATTTCTATGTTATGTA+TGG | + | Chr3:48749392-48749411 | None:intergenic | 20.0% |
! | AAATGTGTGCATTTCTATTA+GGG | + | Chr3:48748529-48748548 | MsG0380014058.01.T01:CDS | 25.0% |
! | ACAGAAGTTCCTATAAAAAT+GGG | - | Chr3:48748632-48748651 | MsG0380014057.01.T01:CDS | 25.0% |
! | ACCCTAAAGATATAGTAATA+TGG | - | Chr3:48748848-48748867 | MsG0380014057.01.T01:intron | 25.0% |
! | ATAGAAATAACACTTGGAAA+GGG | - | Chr3:48749400-48749419 | MsG0380014057.01.T01:intron | 25.0% |
! | ATATCATAACATGACTGATT+TGG | - | Chr3:48749152-48749171 | MsG0380014057.01.T01:intron | 25.0% |
! | CATAACATAGAAATAACACT+TGG | - | Chr3:48749394-48749413 | MsG0380014057.01.T01:intron | 25.0% |
! | CGGAATGAAAAAGATATATA+TGG | - | Chr3:48748479-48748498 | MsG0380014057.01.T01:CDS | 25.0% |
! | CTCCATATTACTATATCTTT+AGG | + | Chr3:48748853-48748872 | None:intergenic | 25.0% |
! | GTTATTCACATTTCATTTGA+TGG | - | Chr3:48748946-48748965 | MsG0380014057.01.T01:intron | 25.0% |
! | TACAGAAGTTCCTATAAAAA+TGG | - | Chr3:48748631-48748650 | MsG0380014057.01.T01:CDS | 25.0% |
!!! | AGCAGTTTTTTGATATCAAA+CGG | + | Chr3:48749516-48749535 | None:intergenic | 25.0% |
!!! | GAACTATTGATTTACGTAAT+TGG | - | Chr3:48748681-48748700 | MsG0380014057.01.T01:CDS | 25.0% |
AACAGAAAACTGAAGAGTAA+CGG | - | Chr3:48748782-48748801 | MsG0380014057.01.T01:intron | 30.0% | |
AACTTCTGTACCATAAACAA+TGG | + | Chr3:48748621-48748640 | MsG0380014058.01.T01:CDS | 30.0% | |
AATCAAACGATTTCGTGAAT+TGG | + | Chr3:48748354-48748373 | None:intergenic | 30.0% | |
ACATTTGTCTCATACACTAT+GGG | - | Chr3:48748543-48748562 | MsG0380014057.01.T01:CDS | 30.0% | |
ATATTATATACCCACTCATG+TGG | - | Chr3:48749190-48749209 | MsG0380014057.01.T01:intron | 30.0% | |
ATTGGAGATACCATTGTTTA+TGG | - | Chr3:48748608-48748627 | MsG0380014057.01.T01:CDS | 30.0% | |
CAAATGTGTGCATTTCTATT+AGG | + | Chr3:48748530-48748549 | MsG0380014058.01.T01:CDS | 30.0% | |
CATAGAAATAACACTTGGAA+AGG | - | Chr3:48749399-48749418 | MsG0380014057.01.T01:intron | 30.0% | |
CATGAGTGGGTATATAATAT+AGG | + | Chr3:48749190-48749209 | None:intergenic | 30.0% | |
CGTAATTTCATAGAGTCATT+CGG | - | Chr3:48749069-48749088 | MsG0380014057.01.T01:intron | 30.0% | |
GAAGTAACCAATTAGGTTTA+CGG | - | Chr3:48748703-48748722 | MsG0380014057.01.T01:CDS | 30.0% | |
GATTATGATATCTATACAGC+TGG | + | Chr3:48749262-48749281 | None:intergenic | 30.0% | |
GCAACATTAAAATTACCTTC+TGG | - | Chr3:48749484-48749503 | MsG0380014057.01.T01:CDS | 30.0% | |
GGAGTAAACCAAAAAAGTTT+GGG | - | Chr3:48749565-48749584 | MsG0380014057.01.T01:CDS | 30.0% | |
GTAATTGGAAGTAACCAATT+AGG | - | Chr3:48748696-48748715 | MsG0380014057.01.T01:CDS | 30.0% | |
GTTATGATATTCTACATCCT+AGG | + | Chr3:48749142-48749161 | None:intergenic | 30.0% | |
TGGAGTAAACCAAAAAAGTT+TGG | - | Chr3:48749564-48749583 | MsG0380014057.01.T01:CDS | 30.0% | |
! | ACCGTAAAATAGATTTTCGA+CGG | - | Chr3:48748459-48748478 | MsG0380014057.01.T01:CDS | 30.0% |
! | ATTAAAATTACCTTCTGGAG+AGG | - | Chr3:48749489-48749508 | MsG0380014057.01.T01:CDS | 30.0% |
! | TCACGAAATCGTTTGATTTA+TGG | - | Chr3:48748356-48748375 | MsG0380014057.01.T01:CDS | 30.0% |
! | TCCGTCGAAAATCTATTTTA+CGG | + | Chr3:48748463-48748482 | MsG0380014058.01.T01:CDS | 30.0% |
AAAAAAACCCTCAACTCCTT+GGG | - | Chr3:48749699-48749718 | MsG0380014057.01.T01:CDS | 35.0% | |
ATAACTACTCCTCTTACTAC+AGG | + | Chr3:48749625-48749644 | None:intergenic | 35.0% | |
ATTTATGGACAGCATCATTG+TGG | - | Chr3:48748371-48748390 | MsG0380014057.01.T01:CDS | 35.0% | |
CACATTTGTCTCATACACTA+TGG | - | Chr3:48748542-48748561 | MsG0380014057.01.T01:CDS | 35.0% | |
CATTTGTCTCATACACTATG+GGG | - | Chr3:48748544-48748563 | MsG0380014057.01.T01:CDS | 35.0% | |
TAATGATTCCTCTGGCATTA+CGG | + | Chr3:48748403-48748422 | MsG0380014058.01.T01:CDS | 35.0% | |
! | ACATTTCATTTGATGGTCAG+AGG | - | Chr3:48748953-48748972 | MsG0380014057.01.T01:intron | 35.0% |
! | AGATATATTTTACACCCCAG+AGG | - | Chr3:48748578-48748597 | MsG0380014057.01.T01:CDS | 35.0% |
! | ATATATTTTACACCCCAGAG+GGG | - | Chr3:48748580-48748599 | MsG0380014057.01.T01:CDS | 35.0% |
! | CTCCTTGTTTCGTTTCAAAA+GGG | - | Chr3:48748912-48748931 | MsG0380014057.01.T01:intron | 35.0% |
! | GATATATTTTACACCCCAGA+GGG | - | Chr3:48748579-48748598 | MsG0380014057.01.T01:CDS | 35.0% |
! | TCCTTGTTTCGTTTCAAAAG+GGG | - | Chr3:48748913-48748932 | MsG0380014057.01.T01:intron | 35.0% |
! | TTGCTACTTACACATAGTAC+AGG | + | Chr3:48749049-48749068 | None:intergenic | 35.0% |
!! | AGACATTTCTATTTTTCCCC+GGG | + | Chr3:48749017-48749036 | None:intergenic | 35.0% |
!! | AGGGCATTTCCCATTTTTAT+AGG | + | Chr3:48748644-48748663 | MsG0380014058.01.T01:CDS | 35.0% |
!! | GAGACATTTCTATTTTTCCC+CGG | + | Chr3:48749018-48749037 | None:intergenic | 35.0% |
!!! | AGGGTTTTTTTCTACCAATC+GGG | + | Chr3:48749690-48749709 | None:intergenic | 35.0% |
!!! | GAGGGTTTTTTTCTACCAAT+CGG | + | Chr3:48749691-48749710 | None:intergenic | 35.0% |
AAAAAACCCTCAACTCCTTG+GGG | - | Chr3:48749700-48749719 | MsG0380014057.01.T01:CDS | 40.0% | |
AAAAACTGCTCAGCAACAGT+AGG | - | Chr3:48749526-48749545 | MsG0380014057.01.T01:CDS | 40.0% | |
AAGCTTGTACAGTTTGGGAA+GGG | - | Chr3:48749311-48749330 | MsG0380014057.01.T01:intron | 40.0% | |
ACACATAGTACAGGTAACGT+AGG | + | Chr3:48749040-48749059 | None:intergenic | 40.0% | |
AGCGAAACTGATTGCAAAAG+AGG | - | Chr3:48749453-48749472 | MsG0380014057.01.T01:CDS | 40.0% | |
ATAGTTCAAACCGCACTCAA+AGG | + | Chr3:48748668-48748687 | MsG0380014058.01.T01:CDS | 40.0% | |
ATGAAGGAACAGAAAGACCT+AGG | - | Chr3:48749122-48749141 | MsG0380014057.01.T01:intron | 40.0% | |
CAAGCTTCTTCCAAAGCATA+CGG | + | Chr3:48749298-48749317 | None:intergenic | 40.0% | |
CGAAACCTATCAATCGATCA+CGG | - | Chr3:48748726-48748745 | MsG0380014057.01.T01:CDS | 40.0% | |
CGAAACTGATTGCAAAAGAG+GGG | - | Chr3:48749455-48749474 | MsG0380014057.01.T01:CDS | 40.0% | |
GAAAAAAACCCTCAACTCCT+TGG | - | Chr3:48749698-48749717 | MsG0380014057.01.T01:CDS | 40.0% | |
GAAATAACACTTGGAAAGGG+TGG | - | Chr3:48749403-48749422 | MsG0380014057.01.T01:intron | 40.0% | |
GAAGAACATAAGCCAGATGA+AGG | - | Chr3:48749106-48749125 | MsG0380014057.01.T01:intron | 40.0% | |
GATTGCAAAAGAGGGGAAAT+CGG | - | Chr3:48749462-48749481 | MsG0380014057.01.T01:CDS | 40.0% | |
GCAAATTGAAAGCTAAGCAG+TGG | - | Chr3:48748975-48748994 | MsG0380014057.01.T01:intron | 40.0% | |
GCGAAACTGATTGCAAAAGA+GGG | - | Chr3:48749454-48749473 | MsG0380014057.01.T01:CDS | 40.0% | |
GGAAGAAGCTTGTACAGTTT+GGG | - | Chr3:48749306-48749325 | MsG0380014057.01.T01:intron | 40.0% | |
GGATTTCACTTGACTGTCTA+CGG | + | Chr3:48748333-48748352 | None:intergenic | 40.0% | |
TCCAATTTGAGTACCTCTAC+AGG | - | Chr3:48748750-48748769 | MsG0380014057.01.T01:intron | 40.0% | |
TGGAAGAAGCTTGTACAGTT+TGG | - | Chr3:48749305-48749324 | MsG0380014057.01.T01:intron | 40.0% | |
TGTTGAAGTCTATCCTGTAG+AGG | + | Chr3:48748766-48748785 | None:intergenic | 40.0% | |
! | ATAACGAAGTACCACATGAG+TGG | + | Chr3:48749204-48749223 | None:intergenic | 40.0% |
! | CCTTGTTTCGTTTCAAAAGG+GGG | - | Chr3:48748914-48748933 | MsG0380014057.01.T01:intron | 40.0% |
! | GCTCCTTGTTTCGTTTCAAA+AGG | - | Chr3:48748911-48748930 | MsG0380014057.01.T01:intron | 40.0% |
! | GGTAATTCTAAAGATTCCCC+CGG | - | Chr3:48748996-48749015 | MsG0380014057.01.T01:intron | 40.0% |
! | GTAATTCTAAAGATTCCCCC+GGG | - | Chr3:48748997-48749016 | MsG0380014057.01.T01:intron | 40.0% |
! | TAACGAAGTACCACATGAGT+GGG | + | Chr3:48749203-48749222 | None:intergenic | 40.0% |
! | TAATTCTAAAGATTCCCCCG+GGG | - | Chr3:48748998-48749017 | MsG0380014057.01.T01:intron | 40.0% |
!! | ACATTTCTATTTTTCCCCGG+GGG | + | Chr3:48749015-48749034 | None:intergenic | 40.0% |
!! | GACATTTCTATTTTTCCCCG+GGG | + | Chr3:48749016-48749035 | None:intergenic | 40.0% |
!! | TCCTGTAGAGGTACTCAAAT+TGG | + | Chr3:48748754-48748773 | None:intergenic | 40.0% |
!!! | GGGTTTTTTTCTACCAATCG+GGG | + | Chr3:48749689-48749708 | None:intergenic | 40.0% |
AAATGCCCTACCTTTGAGTG+CGG | - | Chr3:48748655-48748674 | MsG0380014057.01.T01:CDS | 45.0% | |
ACTTCAACCGATATGCCCTT+AGG | - | Chr3:48749361-48749380 | MsG0380014057.01.T01:intron | 45.0% | |
AGCTTGTACAGTTTGGGAAG+GGG | - | Chr3:48749312-48749331 | MsG0380014057.01.T01:intron | 45.0% | |
ATCCAGAAAGCCGTATGCTT+TGG | - | Chr3:48749285-48749304 | MsG0380014057.01.T01:intron | 45.0% | |
ATCTCCAATTATAGCCCCTC+TGG | + | Chr3:48748597-48748616 | MsG0380014058.01.T01:CDS | 45.0% | |
CAAAAAAGTTTGGGCAGAGC+CGG | - | Chr3:48749574-48749593 | MsG0380014057.01.T01:CDS | 45.0% | |
CAGCAACAGTAGGACAAGTA+GGG | - | Chr3:48749536-48749555 | MsG0380014057.01.T01:CDS | 45.0% | |
CTACTTCTTCTTCCAAGTGC+AGG | + | Chr3:48749730-48749749 | None:intergenic | 45.0% | |
GAAGCTTGTACAGTTTGGGA+AGG | - | Chr3:48749310-48749329 | MsG0380014057.01.T01:intron | 45.0% | |
GGACAGCATCATTGTGGTAA+AGG | - | Chr3:48748377-48748396 | MsG0380014057.01.T01:CDS | 45.0% | |
GGTCTTTCTGTTCCTTCATC+TGG | + | Chr3:48749121-48749140 | None:intergenic | 45.0% | |
GGTTTCGCCGTAAACCTAAT+TGG | + | Chr3:48748713-48748732 | MsG0380014058.01.T01:CDS | 45.0% | |
GTAGGACAAGTAGGGAATGT+TGG | - | Chr3:48749544-48749563 | MsG0380014057.01.T01:CDS | 45.0% | |
GTTTCAAAAGGGGGAAGACA+CGG | - | Chr3:48748923-48748942 | MsG0380014057.01.T01:intron | 45.0% | |
TCAAACCGCACTCAAAGGTA+GGG | + | Chr3:48748663-48748682 | MsG0380014058.01.T01:CDS | 45.0% | |
TCAGCAACAGTAGGACAAGT+AGG | - | Chr3:48749535-48749554 | MsG0380014057.01.T01:CDS | 45.0% | |
TCTCCAATTATAGCCCCTCT+GGG | + | Chr3:48748596-48748615 | MsG0380014058.01.T01:CDS | 45.0% | |
TGGATCCGTGATCGATTGAT+AGG | + | Chr3:48748734-48748753 | None:intergenic | 45.0% | |
TGTCTCATACACTATGGGGA+TGG | - | Chr3:48748548-48748567 | MsG0380014057.01.T01:CDS | 45.0% | |
TTATGTATGGCCGTGCCTAA+GGG | + | Chr3:48749379-48749398 | None:intergenic | 45.0% | |
TTCAAACCGCACTCAAAGGT+AGG | + | Chr3:48748664-48748683 | MsG0380014058.01.T01:CDS | 45.0% | |
TTCCAAAGCATACGGCTTTC+TGG | + | Chr3:48749290-48749309 | None:intergenic | 45.0% | |
TTTCAAAAGGGGGAAGACAC+GGG | - | Chr3:48748924-48748943 | MsG0380014057.01.T01:intron | 45.0% | |
! | ACCTAACCAACGTTTAGCTC+CGG | + | Chr3:48749596-48749615 | None:intergenic | 45.0% |
!!! | CCCCCTTTTGAAACGAAACA+AGG | + | Chr3:48748917-48748936 | None:intergenic | 45.0% |
AACCCTGTAGACCATCCACA+TGG | - | Chr3:48749646-48749665 | MsG0380014057.01.T01:CDS | 50.0% | |
AACCGATATGCCCTTAGGCA+CGG | - | Chr3:48749366-48749385 | MsG0380014057.01.T01:intron | 50.0% | |
AGGATAACCCCAAGGAGTTG+AGG | + | Chr3:48749710-48749729 | None:intergenic | 50.0% | |
ATCAAACGGACCTCTCCAGA+AGG | + | Chr3:48749502-48749521 | None:intergenic | 50.0% | |
ATCATTACCGCAGGGCATAG+AGG | - | Chr3:48748416-48748435 | MsG0380014057.01.T01:CDS | 50.0% | |
CACCATGTGGATGGTCTACA+GGG | + | Chr3:48749651-48749670 | None:intergenic | 50.0% | |
CCAGAGGAATCATTACCGCA+GGG | - | Chr3:48748408-48748427 | MsG0380014057.01.T01:CDS | 50.0% | |
CTCCAATTATAGCCCCTCTG+GGG | + | Chr3:48748595-48748614 | MsG0380014058.01.T01:CDS | 50.0% | |
GGACAATTAGCTAGAGCAGC+TGG | - | Chr3:48749424-48749443 | MsG0380014057.01.T01:intron | 50.0% | |
GGATAACCCCAAGGAGTTGA+GGG | + | Chr3:48749709-48749728 | None:intergenic | 50.0% | |
GGTAAGCGTCCTGTAGTAAG+AGG | - | Chr3:48749613-48749632 | MsG0380014057.01.T01:CDS | 50.0% | |
GTTATGTATGGCCGTGCCTA+AGG | + | Chr3:48749380-48749399 | None:intergenic | 50.0% | |
!! | ATCCACATGGTGGTGGTGAA+GGG | - | Chr3:48749659-48749678 | MsG0380014057.01.T01:CDS | 50.0% |
!!! | CGGCTCTGCCCAAACTTTTT+TGG | + | Chr3:48749576-48749595 | None:intergenic | 50.0% |
ATTACCGCAGGGCATAGAGG+AGG | - | Chr3:48748419-48748438 | MsG0380014057.01.T01:CDS | 55.0% | |
CACCCCAGAGGGGCTATAAT+TGG | - | Chr3:48748590-48748609 | MsG0380014057.01.T01:CDS | 55.0% | |
CCAAGTGCAGGATAACCCCA+AGG | + | Chr3:48749718-48749737 | None:intergenic | 55.0% | |
CCACCATGTGGATGGTCTAC+AGG | + | Chr3:48749652-48749671 | None:intergenic | 55.0% | |
CCCTGCGGTAATGATTCCTC+TGG | + | Chr3:48748411-48748430 | MsG0380014058.01.T01:CDS | 55.0% | |
CCTGTAGACCATCCACATGG+TGG | - | Chr3:48749649-48749668 | MsG0380014057.01.T01:CDS | 55.0% | |
CCTTGGGGTTATCCTGCACT+TGG | - | Chr3:48749715-48749734 | MsG0380014057.01.T01:CDS | 55.0% | |
CTTCACCACCACCATGTGGA+TGG | + | Chr3:48749660-48749679 | None:intergenic | 55.0% | |
GACTGTCTACGGCTCCATTG+CGG | + | Chr3:48748322-48748341 | None:intergenic | 55.0% | |
GCCAGAGGAATCATTACCGC+AGG | - | Chr3:48748407-48748426 | MsG0380014057.01.T01:CDS | 55.0% | |
GGTAAAGGCCGTAATGCCAG+AGG | - | Chr3:48748392-48748411 | MsG0380014057.01.T01:CDS | 55.0% | |
GTAGACCATCCACATGGTGG+TGG | - | Chr3:48749652-48749671 | MsG0380014057.01.T01:CDS | 55.0% | |
! | GCCGGAGCTAAACGTTGGTT+AGG | - | Chr3:48749592-48749611 | MsG0380014057.01.T01:CDS | 55.0% |
!! | ACATGGTGGTGGTGAAGGGA+GGG | - | Chr3:48749663-48749682 | MsG0380014057.01.T01:CDS | 55.0% |
!! | AGGAGCGCTTCGTGTTCTGT+CGG | + | Chr3:48748897-48748916 | None:intergenic | 55.0% |
!! | CATCCACATGGTGGTGGTGA+AGG | - | Chr3:48749658-48749677 | MsG0380014057.01.T01:CDS | 55.0% |
ACCTCCTCCTCTATGCCCTG+CGG | + | Chr3:48748426-48748445 | MsG0380014058.01.T01:CDS | 60.0% | |
CTCCCTTCACCACCACCATG+TGG | + | Chr3:48749664-48749683 | None:intergenic | 60.0% | |
GCAGAGCCGGAGCTAAACGT+TGG | - | Chr3:48749587-48749606 | MsG0380014057.01.T01:CDS | 60.0% | |
TCTATCCCGAGCAGCCGCAA+TGG | - | Chr3:48748305-48748324 | MsG0380014057.01.T01:CDS | 60.0% | |
! | GGCCGTGCCTAAGGGCATAT+CGG | + | Chr3:48749371-48749390 | None:intergenic | 60.0% |
!! | CACATGGTGGTGGTGAAGGG+AGG | - | Chr3:48749662-48749681 | MsG0380014057.01.T01:CDS | 60.0% |
ACCGCAGGGCATAGAGGAGG+AGG | - | Chr3:48748422-48748441 | MsG0380014057.01.T01:CDS | 65.0% | |
ACGGCTCCATTGCGGCTGCT+CGG | + | Chr3:48748314-48748333 | None:intergenic | 65.0% | |
CGGCTCCATTGCGGCTGCTC+GGG | + | Chr3:48748313-48748332 | None:intergenic | 70.0% | |
GGTGAAGGGAGGGCCCCGAT+TGG | - | Chr3:48749673-48749692 | MsG0380014057.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 48748281 | 48749801 | 48748281 | ID=MsG0380014057.01;Name=MsG0380014057.01 |
Chr3 | mRNA | 48748281 | 48749801 | 48748281 | ID=MsG0380014057.01.T01;Parent=MsG0380014057.01;Name=MsG0380014057.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|275 |
Chr3 | exon | 48749453 | 48749801 | 48749453 | ID=MsG0380014057.01.T01:exon:9275;Parent=MsG0380014057.01.T01 |
Chr3 | exon | 48748281 | 48748759 | 48748281 | ID=MsG0380014057.01.T01:exon:9274;Parent=MsG0380014057.01.T01 |
Chr3 | CDS | 48749453 | 48749801 | 48749453 | ID=MsG0380014057.01.T01:cds;Parent=MsG0380014057.01.T01 |
Chr3 | CDS | 48748281 | 48748759 | 48748281 | ID=MsG0380014057.01.T01:cds;Parent=MsG0380014057.01.T01 |
Gene Sequence |
Protein sequence |