Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013889.01.T01 | YP_009141600.1 | 98.851 | 87 | 1 | 0 | 1 | 87 | 100 | 186 | 1.63E-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013889.01.T01 | Q9BBT5 | 89.655 | 87 | 9 | 0 | 1 | 87 | 100 | 186 | 6.97E-52 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048560.01 | MsG0380013889.01 | 0.805066 | 1.597095e-49 | 8.369277e-47 |
| MsG0080048689.01 | MsG0380013889.01 | 0.865376 | 6.175438e-65 | 2.004686e-61 |
| MsG0080048691.01 | MsG0380013889.01 | 0.808203 | 3.474964e-50 | 1.974793e-47 |
| MsG0080049078.01 | MsG0380013889.01 | 0.824271 | 8.836400e-54 | 7.789132e-51 |
| MsG0080049079.01 | MsG0380013889.01 | 0.817610 | 3.016770e-52 | 2.207325e-49 |
| MsG0080049080.01 | MsG0380013889.01 | 0.843519 | 1.333065e-58 | 2.091044e-55 |
| MsG0180000325.01 | MsG0380013889.01 | 0.803953 | 2.725587e-49 | 1.387988e-46 |
| MsG0180000502.01 | MsG0380013889.01 | 0.810594 | 1.066402e-50 | 6.455016e-48 |
| MsG0180002227.01 | MsG0380013889.01 | 0.811387 | 7.183471e-51 | 4.440509e-48 |
| MsG0180003933.01 | MsG0380013889.01 | 0.801052 | 1.079953e-48 | 5.107798e-46 |
| MsG0180004187.01 | MsG0380013889.01 | 0.801288 | 9.665730e-49 | 4.598560e-46 |
| MsG0180004292.01 | MsG0380013889.01 | 0.804683 | 1.920695e-49 | 9.966052e-47 |
| MsG0180004302.01 | MsG0380013889.01 | 0.810948 | 8.941104e-51 | 5.464057e-48 |
| MsG0180004937.01 | MsG0380013889.01 | 0.803547 | 3.309216e-49 | 1.667699e-46 |
| MsG0280011279.01 | MsG0380013889.01 | 0.802374 | 5.782803e-49 | 2.828253e-46 |
| MsG0380013448.01 | MsG0380013889.01 | 0.804756 | 1.853807e-49 | 9.637584e-47 |
| MsG0380013888.01 | MsG0380013889.01 | 0.821311 | 4.318855e-53 | 3.501211e-50 |
| MsG0380013889.01 | MsG0380013915.01 | 0.827596 | 1.433816e-54 | 1.390427e-51 |
| MsG0380013889.01 | MsG0380013916.01 | 0.810016 | 1.421662e-50 | 8.475797e-48 |
| MsG0380013889.01 | MsG0380013917.01 | 0.848661 | 5.315906e-60 | 9.826600e-57 |
| MsG0380013889.01 | MsG0380013918.01 | 0.873700 | 1.199545e-67 | 5.254811e-64 |
| MsG0380013889.01 | MsG0380013919.01 | 0.839584 | 1.452068e-57 | 2.014176e-54 |
| MsG0380013889.01 | MsG0380013926.01 | 0.807998 | 3.843428e-50 | 2.172269e-47 |
| MsG0380013889.01 | MsG0380013927.01 | 0.812945 | 3.284471e-51 | 2.116296e-48 |
| MsG0380013889.01 | MsG0380013930.01 | 0.830244 | 3.275728e-55 | 3.432071e-52 |
| MsG0380013889.01 | MsG0380013931.01 | 0.847378 | 1.201178e-59 | 2.130863e-56 |
| MsG0380013889.01 | MsG0380013932.01 | 0.862273 | 5.693706e-64 | 1.657831e-60 |
| MsG0380013889.01 | MsG0380013935.01 | 0.830203 | 3.351622e-55 | 3.507521e-52 |
| MsG0380013889.01 | MsG0380013938.01 | 0.831813 | 1.349333e-55 | 1.480799e-52 |
| MsG0380013889.01 | MsG0380013939.01 | 0.849793 | 2.574203e-60 | 4.936583e-57 |
| MsG0380013889.01 | MsG0380013947.01 | 0.820185 | 7.839744e-53 | 6.160070e-50 |
| MsG0380013889.01 | MsG0380013948.01 | 0.801851 | 7.407298e-49 | 3.574734e-46 |
| MsG0380013889.01 | MsG0380013949.01 | 0.819832 | 9.442733e-53 | 7.346793e-50 |
| MsG0380013889.01 | MsG0380013952.01 | 0.838395 | 2.949637e-57 | 3.945483e-54 |
| MsG0380013889.01 | MsG0380013955.01 | 0.824503 | 7.791369e-54 | 6.914107e-51 |
| MsG0380013889.01 | MsG0380013958.01 | 0.849229 | 3.698547e-60 | 6.965565e-57 |
| MsG0380013889.01 | MsG0380013959.01 | 0.809331 | 1.994401e-50 | 1.167663e-47 |
| MsG0380013889.01 | MsG0380013963.01 | 0.834098 | 3.648053e-56 | 4.285215e-53 |
| MsG0380013889.01 | MsG0380013964.01 | 0.878917 | 1.904952e-69 | 1.012548e-65 |
| MsG0380013889.01 | MsG0380013965.01 | 0.818834 | 1.594237e-52 | 1.206485e-49 |
| MsG0380013889.01 | MsG0380013969.01 | 0.835243 | 1.879974e-56 | 2.285708e-53 |
| MsG0380013889.01 | MsG0380013970.01 | 0.814117 | 1.813599e-51 | 1.206356e-48 |
| MsG0380013889.01 | MsG0380013972.01 | 0.832211 | 1.075932e-55 | 1.194452e-52 |
| MsG0380013889.01 | MsG0380013976.01 | 0.827485 | 1.524654e-54 | 1.473955e-51 |
| MsG0380013889.01 | MsG0380013978.01 | 0.865767 | 4.650039e-65 | 1.530759e-61 |
| MsG0380013889.01 | MsG0380013979.01 | 0.952209 | 3.964563e-110 | 9.540597e-105 |
| MsG0380013889.01 | MsG0380013980.01 | 0.856039 | 4.210610e-62 | 9.917330e-59 |
| MsG0380013889.01 | MsG0380013981.01 | 0.867332 | 1.479869e-65 | 5.147749e-62 |
| MsG0380013889.01 | MsG0380013983.01 | 0.869974 | 2.070120e-66 | 7.918953e-63 |
| MsG0380013889.01 | MsG0380013992.01 | 0.831890 | 1.291300e-55 | 1.420421e-52 |
| MsG0380013889.01 | MsG0380013993.01 | 0.808638 | 2.807021e-50 | 1.613309e-47 |
| MsG0380013889.01 | MsG0380013995.01 | 0.850390 | 1.751634e-60 | 3.425812e-57 |
| MsG0380013889.01 | MsG0380013996.01 | 0.839112 | 1.925403e-57 | 2.632335e-54 |
| MsG0380013889.01 | MsG0380014004.01 | 0.815511 | 8.904208e-52 | 6.151603e-49 |
| MsG0380013889.01 | MsG0380014009.01 | 0.801721 | 7.877772e-49 | 3.789009e-46 |
| MsG0380013889.01 | MsG0380014012.01 | 0.811253 | 7.679609e-51 | 4.730567e-48 |
| MsG0380013889.01 | MsG0380014013.01 | 0.816301 | 5.935784e-52 | 4.190435e-49 |
| MsG0380013889.01 | MsG0380014022.01 | 0.845408 | 4.138577e-59 | 6.890136e-56 |
| MsG0380013889.01 | MsG0380014028.01 | 0.827812 | 1.271910e-54 | 1.241266e-51 |
| MsG0380013889.01 | MsG0380014030.01 | 0.818350 | 2.051793e-52 | 1.532245e-49 |
| MsG0380013889.01 | MsG0380014034.01 | 0.865920 | 4.159965e-65 | 1.376700e-61 |
| MsG0380013889.01 | MsG0380014035.01 | 0.876131 | 1.781562e-68 | 8.539064e-65 |
| MsG0380013889.01 | MsG0380014036.01 | 0.850925 | 1.238385e-60 | 2.464949e-57 |
| MsG0380013889.01 | MsG0380014037.01 | 0.841002 | 6.187064e-58 | 8.967658e-55 |
| MsG0380013889.01 | MsG0380014041.01 | 0.803211 | 3.884898e-49 | 1.940873e-46 |
| MsG0380013889.01 | MsG0380014048.01 | 0.818751 | 1.664945e-52 | 1.257066e-49 |
| MsG0380013889.01 | MsG0380014050.01 | 0.842848 | 2.011875e-58 | 3.089682e-55 |
| MsG0380013889.01 | MsG0380014051.01 | 0.811866 | 5.650146e-51 | 3.537228e-48 |
| MsG0380013889.01 | MsG0380014053.01 | 0.833767 | 4.414832e-56 | 5.134709e-53 |
| MsG0380013889.01 | MsG0380015974.01 | 0.800836 | 1.195674e-48 | 5.623877e-46 |
| MsG0380013889.01 | MsG0380016424.01 | 0.808805 | 2.585250e-50 | 1.492385e-47 |
| MsG0380013889.01 | MsG0380016723.01 | 0.806158 | 9.424391e-50 | 5.079016e-47 |
| MsG0380013889.01 | MsG0480018983.01 | 0.803886 | 2.814500e-49 | 1.430800e-46 |
| MsG0380013889.01 | MsG0480022626.01 | 0.803076 | 4.143009e-49 | 2.062548e-46 |
| MsG0380013889.01 | MsG0480023006.01 | 0.814701 | 1.347720e-51 | 9.107428e-49 |
| MsG0380013889.01 | MsG0480023371.01 | 0.820859 | 5.488334e-53 | 4.393994e-50 |
| MsG0380013889.01 | MsG0480023505.01 | 0.800399 | 1.467644e-48 | 6.827066e-46 |
| MsG0380013889.01 | MsG0480023850.01 | 0.818050 | 2.399291e-52 | 1.776794e-49 |
| MsG0380013889.01 | MsG0580027254.01 | 0.801803 | 7.577301e-49 | 3.652235e-46 |
| MsG0380013889.01 | MsG0580028853.01 | 0.804646 | 1.955109e-49 | 1.013482e-46 |
| MsG0380013889.01 | MsG0680032339.01 | 0.828110 | 1.078678e-54 | 1.062029e-51 |
| MsG0380013889.01 | MsG0780036678.01 | 0.845131 | 4.915928e-59 | 8.111314e-56 |
| MsG0380013889.01 | MsG0780037988.01 | 0.806317 | 8.724303e-50 | 4.720636e-47 |
| MsG0380013889.01 | MsG0780039596.01 | 0.810794 | 9.657428e-51 | 5.876979e-48 |
| MsG0380013889.01 | MsG0780039859.01 | 0.830273 | 3.223011e-55 | 3.379489e-52 |
| MsG0380013889.01 | MsG0780040315.01 | 0.808701 | 2.721865e-50 | 1.566948e-47 |
| MsG0380013889.01 | MsG0780040316.01 | 0.880934 | 3.644078e-70 | 2.093554e-66 |
| MsG0380013889.01 | MsG0780040317.01 | 0.867314 | 1.498920e-65 | 5.210685e-62 |
| MsG0380013889.01 | MsG0780040644.01 | 0.815998 | 6.937067e-52 | 4.856688e-49 |
| MsG0380013889.01 | MsG0780041768.01 | 0.803352 | 3.631392e-49 | 1.820769e-46 |
| MsG0380013889.01 | MsG0780041792.01 | 0.807501 | 4.901441e-50 | 2.734593e-47 |
| MsG0380013889.01 | MsG0880042921.01 | 0.803096 | 4.103189e-49 | 2.043805e-46 |
| MsG0380013889.01 | MsG0880043032.01 | 0.805815 | 1.112515e-49 | 5.943214e-47 |
| MsG0380013889.01 | MsG0880043541.01 | 0.830521 | 2.803301e-55 | 2.960520e-52 |
| MsG0380013889.01 | MsG0880044440.01 | 0.853213 | 2.772168e-61 | 5.945154e-58 |
| MsG0380013889.01 | MsG0880044727.01 | 0.806668 | 7.354572e-50 | 4.015208e-47 |
| MsG0380013889.01 | MsG0880045261.01 | 0.819544 | 1.098720e-52 | 8.480028e-50 |
| MsG0380013889.01 | MsG0880045283.01 | 0.826462 | 2.677858e-54 | 2.512992e-51 |
| MsG0380013889.01 | MsG0880045412.01 | 0.820191 | 7.815830e-53 | 6.142358e-50 |
| MsG0380013889.01 | MsG0880046584.01 | 0.804352 | 2.251422e-49 | 1.158273e-46 |
| MsG0280007026.01 | MsG0380013889.01 | 0.808665 | 2.770444e-50 | 1.593423e-47 |
| MsG0280007041.01 | MsG0380013889.01 | 0.850318 | 1.835109e-60 | 3.580748e-57 |
| MsG0280007042.01 | MsG0380013889.01 | 0.864393 | 1.256258e-64 | 3.938132e-61 |
| MsG0280007600.01 | MsG0380013889.01 | 0.823813 | 1.131591e-53 | 9.848053e-51 |
| MsG0280010137.01 | MsG0380013889.01 | 0.821836 | 3.267385e-53 | 2.688299e-50 |
| MsG0280010281.01 | MsG0380013889.01 | 0.809226 | 2.100770e-50 | 1.226511e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013889.01.T01 | MTR_4g051220 | 95.402 | 87 | 4 | 0 | 1 | 87 | 100 | 186 | 5.38e-57 | 176 |
| MsG0380013889.01.T01 | MTR_0002s0590 | 66.265 | 83 | 28 | 0 | 1 | 83 | 100 | 182 | 5.24e-34 | 121 |
| MsG0380013889.01.T01 | MTR_0477s0040 | 100.000 | 42 | 0 | 0 | 90 | 131 | 1 | 42 | 8.37e-24 | 87.8 |
| MsG0380013889.01.T01 | MTR_4g051213 | 100.000 | 42 | 0 | 0 | 90 | 131 | 1 | 42 | 8.37e-24 | 87.8 |
| MsG0380013889.01.T01 | MTR_8g102790 | 91.892 | 37 | 3 | 0 | 90 | 126 | 1 | 37 | 3.74e-18 | 72.8 |
| MsG0380013889.01.T01 | MTR_1g041800 | 67.857 | 56 | 6 | 1 | 90 | 133 | 1 | 56 | 3.00e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013889.01.T01 | ATCG00380 | 77.011 | 87 | 20 | 0 | 1 | 87 | 100 | 186 | 1.25e-41 | 137 |
Find 28 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | 3:+47523834 | MsG0380013889.01.T01:CDS |
| CGAATAATTCCGACAACTTC+TGG | 0.195705 | 3:+47524540 | MsG0380013889.01.T01:CDS |
| ATGACTAGATCTCGGATAAA+TGG | 0.278088 | 3:+47524471 | MsG0380013889.01.T01:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | 3:-47523814 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | 3:+47523803 | MsG0380013889.01.T01:CDS |
| AATTATTCGTAATAAGATAT+TGG | 0.314059 | 3:-47524526 | None:intergenic |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | 3:-47523774 | None:intergenic |
| TTTATCCGAGATCTAGTCAT+AGG | 0.463215 | 3:-47524468 | None:intergenic |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | 3:-47523683 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | 3:-47523809 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | 3:-47523628 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | 3:+47523835 | MsG0380013889.01.T01:CDS |
| GATATTGGCTACAATGGTAA+AGG | 0.509030 | 3:-47524511 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | 3:-47523788 | None:intergenic |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | 3:-47523627 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | 3:-47523775 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | 3:+47523703 | MsG0380013889.01.T01:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | 3:-47523701 | None:intergenic |
| TAATAAGATATTGGCTACAA+TGG | 0.565840 | 3:-47524517 | None:intergenic |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | 3:+47523704 | MsG0380013889.01.T01:CDS |
| TGCTACCTATGACTAGATCT+CGG | 0.572595 | 3:+47524463 | MsG0380013889.01.T01:CDS |
| GCATTCACTTATTACAGAGA+TGG | 0.579208 | 3:+47524573 | MsG0380013889.01.T01:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | 3:-47523620 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | 3:-47523793 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | 3:-47523771 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | 3:-47523773 | None:intergenic |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | 3:-47523643 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | 3:-47523772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAATAATTTTATCTTA+CGG | - | Chr3:47524335-47524354 | None:intergenic | 10.0% |
| !! | AATTATTCGTAATAAGATAT+TGG | - | Chr3:47524529-47524548 | None:intergenic | 15.0% |
| !! | ATCAAATAATAGATAGTAAA+TGG | + | Chr3:47523834-47523853 | MsG0380013889.01.T01:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | + | Chr3:47523835-47523854 | MsG0380013889.01.T01:CDS | 15.0% |
| !!! | TAAACAATGAAATTTTAGAA+TGG | + | Chr3:47524438-47524457 | MsG0380013889.01.T01:intron | 15.0% |
| !! | GTTTATTACAGAAAGAAATT+AGG | + | Chr3:47524029-47524048 | MsG0380013889.01.T01:intron | 20.0% |
| !! | TTCTGTAATAAACAAAATAG+TGG | - | Chr3:47524022-47524041 | None:intergenic | 20.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | + | Chr3:47523862-47523881 | MsG0380013889.01.T01:intron | 20.0% |
| ! | AACATTGATGAACTTGATAA+GGG | + | Chr3:47524112-47524131 | MsG0380013889.01.T01:intron | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | - | Chr3:47523812-47523831 | None:intergenic | 25.0% |
| ! | AGTACGAAATAACGTAAAAA+TGG | - | Chr3:47524374-47524393 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | + | Chr3:47523839-47523858 | MsG0380013889.01.T01:intron | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | - | Chr3:47523817-47523836 | None:intergenic | 25.0% |
| ! | TAACATTGATGAACTTGATA+AGG | + | Chr3:47524111-47524130 | MsG0380013889.01.T01:intron | 25.0% |
| ! | TATTGTACAATTCCTTTGTT+TGG | + | Chr3:47524395-47524414 | MsG0380013889.01.T01:intron | 25.0% |
| !! | AAATAATTTTATCTTACGGC+AGG | - | Chr3:47524331-47524350 | None:intergenic | 25.0% |
| !! | AACAAAATAGTGGAATAAAG+TGG | - | Chr3:47524012-47524031 | None:intergenic | 25.0% |
| !! | ACAAAATAGTGGAATAAAGT+GGG | - | Chr3:47524011-47524030 | None:intergenic | 25.0% |
| !! | ATTGTACAATTCCTTTGTTT+GGG | + | Chr3:47524396-47524415 | MsG0380013889.01.T01:intron | 25.0% |
| !! | TAATAAGATATTGGCTACAA+TGG | - | Chr3:47524520-47524539 | None:intergenic | 25.0% |
| !!! | TTAAGAATAATTTTGATCCG+AGG | + | Chr3:47523933-47523952 | MsG0380013889.01.T01:intron | 25.0% |
| AGCAAAAAAAACTTACTTCG+AGG | + | Chr3:47524305-47524324 | MsG0380013889.01.T01:intron | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | + | Chr3:47523704-47523723 | MsG0380013889.01.T01:CDS | 30.0% | |
| CATTAACTAAAACATGTCTG+TGG | - | Chr3:47523646-47523665 | None:intergenic | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | + | Chr3:47523803-47523822 | MsG0380013889.01.T01:CDS | 30.0% | |
| TAAAATAATCCCCCAAACAA+AGG | - | Chr3:47524410-47524429 | None:intergenic | 30.0% | |
| TAATCATTATGTAGGAGAGA+TGG | - | Chr3:47524218-47524237 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | + | Chr3:47523703-47523722 | MsG0380013889.01.T01:CDS | 30.0% | |
| TCATTATTCCAACTTTGATG+TGG | - | Chr3:47524065-47524084 | None:intergenic | 30.0% | |
| TTCGCTGTAATAATATCTTG+AGG | - | Chr3:47523704-47523723 | None:intergenic | 30.0% | |
| ! | TTGTACAATTCCTTTGTTTG+GGG | + | Chr3:47524397-47524416 | MsG0380013889.01.T01:intron | 30.0% |
| !!! | CACAGACATGTTTTAGTTAA+TGG | + | Chr3:47523644-47523663 | MsG0380013889.01.T01:CDS | 30.0% |
| ATGACTAGATCTCGGATAAA+TGG | + | Chr3:47524471-47524490 | MsG0380013889.01.T01:CDS | 35.0% | |
| CATACATATTCCATTTGCGT+AGG | + | Chr3:47524261-47524280 | MsG0380013889.01.T01:intron | 35.0% | |
| GCATTCACTTATTACAGAGA+TGG | + | Chr3:47524573-47524592 | MsG0380013889.01.T01:CDS | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | - | Chr3:47523631-47523650 | None:intergenic | 35.0% | |
| TAGAGAATCCACATCAAAGT+TGG | + | Chr3:47524054-47524073 | MsG0380013889.01.T01:intron | 35.0% | |
| TCTGTGGTTAACTAATTGAC+GGG | - | Chr3:47523630-47523649 | None:intergenic | 35.0% | |
| TTTATCCGAGATCTAGTCAT+AGG | - | Chr3:47524471-47524490 | None:intergenic | 35.0% | |
| ! | GATATTGGCTACAATGGTAA+AGG | - | Chr3:47524514-47524533 | None:intergenic | 35.0% |
| ! | TCTTTTTCTCCAGAAGTTGT+CGG | - | Chr3:47524552-47524571 | None:intergenic | 35.0% |
| ! | TGTACAATTCCTTTGTTTGG+GGG | + | Chr3:47524398-47524417 | MsG0380013889.01.T01:intron | 35.0% |
| ACCCACGTCTATACATGAAT+GGG | - | Chr3:47523966-47523985 | None:intergenic | 40.0% | |
| CGAATAATTCCGACAACTTC+TGG | + | Chr3:47524540-47524559 | MsG0380013889.01.T01:CDS | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | - | Chr3:47523796-47523815 | None:intergenic | 40.0% | |
| GGATCAAGAGTCAAATGGAT+TGG | - | Chr3:47523791-47523810 | None:intergenic | 40.0% | |
| TACCCACGTCTATACATGAA+TGG | - | Chr3:47523967-47523986 | None:intergenic | 40.0% | |
| TCATGTATAGACGTGGGTAT+AGG | + | Chr3:47523968-47523987 | MsG0380013889.01.T01:intron | 40.0% | |
| TGAGGTTTGCAACGATAACT+TGG | - | Chr3:47523686-47523705 | None:intergenic | 40.0% | |
| TGATGAACTTGATAAGGGTG+CGG | + | Chr3:47524117-47524136 | MsG0380013889.01.T01:intron | 40.0% | |
| TGCTACCTATGACTAGATCT+CGG | + | Chr3:47524463-47524482 | MsG0380013889.01.T01:CDS | 40.0% | |
| ! | ATAGTGGAATAAAGTGGGCA+AGG | - | Chr3:47524006-47524025 | None:intergenic | 40.0% |
| ! | GACAACTTCTGGAGAAAAAG+AGG | + | Chr3:47524551-47524570 | MsG0380013889.01.T01:CDS | 40.0% |
| ! | GAGGGGCATAATCATTATGT+AGG | - | Chr3:47524226-47524245 | None:intergenic | 40.0% |
| !! | AATGGATTGGCAATTCTTCG+CGG | - | Chr3:47523778-47523797 | None:intergenic | 40.0% |
| !! | GTAGGCTTTTTGTTTACCGA+GGG | - | Chr3:47524160-47524179 | None:intergenic | 40.0% |
| !! | TGTAGGCTTTTTGTTTACCG+AGG | - | Chr3:47524161-47524180 | None:intergenic | 40.0% |
| !! | TTAACTAATTGACGGGCTTG+AGG | - | Chr3:47523623-47523642 | None:intergenic | 40.0% |
| ATGCCTCACTATTCACTCGA+GGG | - | Chr3:47524244-47524263 | None:intergenic | 45.0% | |
| ATTATGTGCGCCTACGCAAA+TGG | - | Chr3:47524274-47524293 | None:intergenic | 45.0% | |
| CATGAATGGGGGAAAATCCT+CGG | - | Chr3:47523953-47523972 | None:intergenic | 45.0% | |
| CCACGTCTATACATGAATGG+GGG | - | Chr3:47523964-47523983 | None:intergenic | 45.0% | |
| CCCACGTCTATACATGAATG+GGG | - | Chr3:47523965-47523984 | None:intergenic | 45.0% | |
| CCCCATTCATGTATAGACGT+GGG | + | Chr3:47523962-47523981 | MsG0380013889.01.T01:intron | 45.0% | |
| TATGCCTCACTATTCACTCG+AGG | - | Chr3:47524245-47524264 | None:intergenic | 45.0% | |
| ! | TAGCACTGGAACTGCTATGT+AGG | - | Chr3:47524178-47524197 | None:intergenic | 45.0% |
| !! | ATGGATTGGCAATTCTTCGC+GGG | - | Chr3:47523777-47523796 | None:intergenic | 45.0% |
| !!! | CTTAATTTAATATTTTAATT+AGG | - | Chr3:47523918-47523937 | None:intergenic | 5.0% |
| AAGAGAGGGATTCGAACCCT+CGG | + | Chr3:47524141-47524160 | MsG0380013889.01.T01:intron | 50.0% | |
| CCCCCATTCATGTATAGACG+TGG | + | Chr3:47523961-47523980 | MsG0380013889.01.T01:intron | 50.0% | |
| TGCCTCACTATTCACTCGAG+GGG | - | Chr3:47524243-47524262 | None:intergenic | 50.0% | |
| ! | GATAAGGGTGCGGAAAGAGA+GGG | + | Chr3:47524127-47524146 | MsG0380013889.01.T01:intron | 50.0% |
| ! | TGATAAGGGTGCGGAAAGAG+AGG | + | Chr3:47524126-47524145 | MsG0380013889.01.T01:intron | 50.0% |
| !! | TGGATTGGCAATTCTTCGCG+GGG | - | Chr3:47523776-47523795 | None:intergenic | 50.0% |
| AGAGATGGCCGAGTGGTTGA+AGG | - | Chr3:47524203-47524222 | None:intergenic | 55.0% | |
| ATGTAGGAGAGATGGCCGAG+TGG | - | Chr3:47524210-47524229 | None:intergenic | 55.0% | |
| GATTGGCAATTCTTCGCGGG+GGG | - | Chr3:47523774-47523793 | None:intergenic | 55.0% | |
| GTGCTACGCCTTCAACCACT+CGG | + | Chr3:47524192-47524211 | MsG0380013889.01.T01:intron | 55.0% | |
| TGCCCCTCGAGTGAATAGTG+AGG | + | Chr3:47524238-47524257 | MsG0380013889.01.T01:intron | 55.0% | |
| ! | AGTGGTTGAAGGCGTAGCAC+TGG | - | Chr3:47524192-47524211 | None:intergenic | 55.0% |
| ! | GGATTGGCAATTCTTCGCGG+GGG | - | Chr3:47523775-47523794 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 47523605 | 47524605 | 47523605 | ID=MsG0380013889.01;Name=MsG0380013889.01 |
| Chr3 | mRNA | 47523605 | 47524605 | 47523605 | ID=MsG0380013889.01.T01;Parent=MsG0380013889.01;Name=MsG0380013889.01.T01;_AED=0.47;_eAED=0.51;_QI=0|0|0|1|0|0|2|0|133 |
| Chr3 | exon | 47523605 | 47523856 | 47523605 | ID=MsG0380013889.01.T01:exon:26396;Parent=MsG0380013889.01.T01 |
| Chr3 | exon | 47524456 | 47524605 | 47524456 | ID=MsG0380013889.01.T01:exon:26397;Parent=MsG0380013889.01.T01 |
| Chr3 | CDS | 47523605 | 47523856 | 47523605 | ID=MsG0380013889.01.T01:cds;Parent=MsG0380013889.01.T01 |
| Chr3 | CDS | 47524456 | 47524605 | 47524456 | ID=MsG0380013889.01.T01:cds;Parent=MsG0380013889.01.T01 |
| Gene Sequence |
| Protein sequence |
