AlfalfaGEDB | MsG0380017150.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017150.01

KEGG: K09419
GO: GO:0003700 GO:0005634 GO:0006355 GO:0043565
PFAM: PF00447

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017150.01.T01	XP_003603058.1	96.247	373	13	1	1	372	1	373	0	743

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017150.01.T01	Q9C635	55.443	395	104	14	1	371	1	347	2.48E-119	352

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017150.01.T01	G7J6F2	96.247	373	13	1	1	372	1	373	0.0	743

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0380017150.01	0.809745	1.625350e-50	9.621754e-48
MsG0180001719.01	MsG0380017150.01	0.820836	5.556698e-53	4.445774e-50
MsG0180002583.01	MsG0380017150.01	0.804656	1.945564e-49	1.008793e-46
MsG0180004471.01	MsG0380017150.01	0.813540	2.430194e-51	1.591488e-48
MsG0180006062.01	MsG0380017150.01	0.809957	1.463614e-50	8.712292e-48
MsG0380014666.01	MsG0380017150.01	0.813114	3.014456e-51	1.951154e-48
MsG0380015340.01	MsG0380017150.01	0.822069	2.885731e-53	2.389844e-50
MsG0380015552.01	MsG0380017150.01	0.811205	7.865372e-51	4.838865e-48
MsG0380017150.01	MsG0380017282.01	0.803109	4.078633e-49	2.032267e-46
MsG0380017150.01	MsG0380017416.01	0.809136	2.196294e-50	1.279209e-47
MsG0380017150.01	MsG0380017440.01	0.838719	2.433527e-57	3.287656e-54
MsG0380017150.01	MsG0480018106.01	0.814440	1.539103e-51	1.032803e-48
MsG0380017150.01	MsG0480019601.01	0.836251	1.043996e-56	1.308522e-53
MsG0380017150.01	MsG0480020937.01	0.823970	1.039678e-53	9.087672e-51
MsG0380017150.01	MsG0480021456.01	0.833121	6.396020e-56	7.297176e-53
MsG0380017150.01	MsG0480021773.01	0.810119	1.350522e-50	8.073097e-48
MsG0380017150.01	MsG0480021902.01	0.826914	2.088624e-54	1.985829e-51
MsG0380017150.01	MsG0480022307.01	0.801425	9.061241e-49	4.325826e-46
MsG0380017150.01	MsG0480022378.01	0.840578	7.992129e-58	1.143335e-54
MsG0380017150.01	MsG0480022784.01	0.803733	3.027451e-49	1.532970e-46
MsG0380017150.01	MsG0480023003.01	0.815388	9.486418e-52	6.531424e-49
MsG0380017150.01	MsG0480023424.01	0.819660	1.033800e-52	8.004765e-50
MsG0380017150.01	MsG0480023426.01	0.813489	2.494570e-51	1.631392e-48
MsG0380017150.01	MsG0480023532.01	0.822362	2.466892e-53	2.060484e-50
MsG0380017150.01	MsG0480023626.01	0.807024	6.186548e-50	3.408906e-47
MsG0380017150.01	MsG0580024276.01	0.845936	2.974578e-59	5.037880e-56
MsG0380017150.01	MsG0580025504.01	0.801885	7.289362e-49	3.520953e-46
MsG0380017150.01	MsG0580025506.01	0.806836	6.777802e-50	3.716687e-47
MsG0380017150.01	MsG0580028927.01	0.804373	2.228398e-49	1.147070e-46
MsG0380017150.01	MsG0580028955.01	0.816560	5.192196e-52	3.691387e-49
MsG0380017150.01	MsG0680031356.01	0.806255	8.987627e-50	4.855755e-47
MsG0380017150.01	MsG0680035792.01	0.840644	7.682388e-58	1.101268e-54
MsG0380017150.01	MsG0780036553.01	0.800704	1.272105e-48	5.963109e-46
MsG0380017150.01	MsG0780038736.01	0.825183	5.386326e-54	4.874460e-51
MsG0380017150.01	MsG0780038952.01	0.803287	3.746748e-49	1.875472e-46
MsG0380017150.01	MsG0780039536.01	0.818528	1.870412e-52	1.403592e-49
MsG0380017150.01	MsG0780040620.01	0.804021	2.637961e-49	1.345693e-46
MsG0380017150.01	MsG0780040641.01	0.806354	8.566176e-50	4.639491e-47
MsG0380017150.01	MsG0780041008.01	0.829518	4.922801e-55	5.050016e-52
MsG0380017150.01	MsG0780041273.01	0.809403	1.925464e-50	1.129467e-47
MsG0380017150.01	MsG0780041546.01	0.808817	2.570851e-50	1.484556e-47
MsG0380017150.01	MsG0780041820.01	0.819490	1.130137e-52	8.709548e-50
MsG0380017150.01	MsG0880041837.01	0.801110	1.050710e-48	4.976666e-46
MsG0380017150.01	MsG0880046319.01	0.800685	1.283600e-48	6.014226e-46
MsG0380017150.01	MsG0880046433.01	0.804718	1.888412e-49	9.807772e-47
MsG0380017150.01	MsG0880046529.01	0.831830	1.336049e-55	1.466984e-52
MsG0380017150.01	MsG0880046905.01	0.823184	1.587833e-53	1.357407e-50
MsG0380017150.01	MsG0880046993.01	0.808460	3.063071e-50	1.752486e-47
MsG0280006909.01	MsG0380017150.01	0.816679	4.883132e-52	3.482910e-49
MsG0280007092.01	MsG0380017150.01	0.812112	4.993752e-51	3.147231e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017150.01.T01	MTR_3g101870	96.247	373	13	1	1	372	1	373	0.0	743
MsG0380017150.01.T01	MTR_5g089170	47.337	338	87	11	1	335	1	250	1.87e-87	265
MsG0380017150.01.T01	MTR_5g010680	47.391	230	107	5	1	228	1	218	8.60e-59	194
MsG0380017150.01.T01	MTR_0020s0020	46.429	224	89	5	15	227	24	227	3.09e-55	185
MsG0380017150.01.T01	MTR_5g017470	44.796	221	85	5	17	229	2	193	5.60e-51	172
MsG0380017150.01.T01	MTR_1g100777	42.326	215	95	2	16	229	10	196	7.02e-51	172
MsG0380017150.01.T01	MTR_7g091370	39.744	234	91	5	9	237	2	190	1.68e-47	161
MsG0380017150.01.T01	MTR_6g043060	74.194	93	24	0	23	115	21	113	3.68e-46	160
MsG0380017150.01.T01	MTR_5g029680	72.632	95	26	0	21	115	29	123	3.39e-44	159
MsG0380017150.01.T01	MTR_7g095680	69.388	98	30	0	18	115	43	140	4.20e-43	154
MsG0380017150.01.T01	MTR_8g083100	72.527	91	25	0	25	115	23	113	1.90e-41	152
MsG0380017150.01.T01	MTR_1g102860	65.049	103	36	0	18	120	34	136	8.80e-41	146
MsG0380017150.01.T01	MTR_1g061170	66.667	99	33	0	24	122	49	147	9.93e-40	147
MsG0380017150.01.T01	MTR_8g087540	64.646	99	34	1	17	115	6	103	2.23e-39	144
MsG0380017150.01.T01	MTR_4g077970	42.487	193	63	4	24	216	12	156	1.05e-38	144
MsG0380017150.01.T01	MTR_1g071360	64.078	103	36	1	22	123	30	132	4.68e-38	140
MsG0380017150.01.T01	MTR_2g100680	65.957	94	32	0	22	115	29	122	7.09e-38	141
MsG0380017150.01.T01	MTR_1g071360	64.078	103	36	1	22	123	27	129	8.04e-38	140
MsG0380017150.01.T01	MTR_6g086805	62.105	95	36	0	21	115	8	102	1.24e-36	136
MsG0380017150.01.T01	MTR_2g100670	65.957	94	32	0	22	115	31	124	2.18e-36	134
MsG0380017150.01.T01	MTR_3g104550	56.757	111	43	1	18	123	40	150	2.27e-36	136
MsG0380017150.01.T01	MTR_2g017890	61.000	100	38	1	17	116	9	107	6.14e-36	135
MsG0380017150.01.T01	MTR_2g100670	65.957	94	32	0	22	115	139	232	2.52e-35	134
MsG0380017150.01.T01	MTR_4g088900	58.000	100	38	1	21	116	30	129	2.13e-34	126
MsG0380017150.01.T01	MTR_8g105780	62.766	94	34	1	23	115	21	114	5.63e-33	127
MsG0380017150.01.T01	MTR_4g045757	56.923	65	28	0	17	81	7	71	1.74e-18	79.7
MsG0380017150.01.T01	MTR_5g047190	40.217	92	48	2	32	116	1	92	3.08e-15	71.2
MsG0380017150.01.T01	MTR_4g011850	87.879	33	4	0	84	116	9	41	6.30e-15	71.6
MsG0380017150.01.T01	MTR_4g011850	78.378	37	8	0	193	229	63	99	5.83e-13	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017150.01.T01	AT1G46264	55.443	395	104	14	1	371	1	347	2.52e-120	352
MsG0380017150.01.T01	AT4G11660	49.533	214	105	2	16	227	51	263	9.72e-60	197
MsG0380017150.01.T01	AT5G62020	44.726	237	109	4	17	253	16	230	3.18e-58	191
MsG0380017150.01.T01	AT4G36990	45.794	214	89	2	17	230	7	193	6.70e-54	179
MsG0380017150.01.T01	AT1G32330	43.627	204	54	3	21	216	34	184	1.27e-45	163
MsG0380017150.01.T01	AT1G32330	43.627	204	54	3	21	216	34	184	1.33e-45	163
MsG0380017150.01.T01	AT2G41690	41.905	210	89	5	22	228	38	217	4.69e-45	155
MsG0380017150.01.T01	AT4G17750	70.707	99	29	0	20	118	48	146	4.89e-45	162
MsG0380017150.01.T01	AT3G22830	67.000	100	33	0	18	117	55	154	5.47e-42	152
MsG0380017150.01.T01	AT3G02990	61.261	111	39	2	8	115	5	114	2.41e-40	149
MsG0380017150.01.T01	AT5G03720	67.677	99	32	0	24	122	55	153	2.94e-40	147
MsG0380017150.01.T01	AT5G03720	67.677	99	32	0	24	122	55	153	2.94e-40	147
MsG0380017150.01.T01	AT5G16820	68.367	98	30	1	20	117	24	120	1.40e-39	147
MsG0380017150.01.T01	AT5G16820	68.367	98	30	1	20	117	24	120	1.40e-39	147
MsG0380017150.01.T01	AT5G43840	64.356	101	36	0	22	122	17	117	2.89e-39	141
MsG0380017150.01.T01	AT2G26150	65.957	94	32	0	22	115	42	135	1.99e-38	140
MsG0380017150.01.T01	AT2G26150	65.957	94	32	0	22	115	42	135	1.99e-38	140
MsG0380017150.01.T01	AT3G24520	62.245	98	37	0	21	118	14	111	6.23e-38	139
MsG0380017150.01.T01	AT4G13980	67.033	91	30	0	25	115	24	114	1.07e-37	141
MsG0380017150.01.T01	AT3G51910	61.856	97	37	0	18	114	23	119	3.03e-37	135
MsG0380017150.01.T01	AT3G63350	60.825	97	38	0	18	114	22	118	1.09e-35	132
MsG0380017150.01.T01	AT5G54070	59.341	91	37	0	24	114	71	161	5.27e-34	129
MsG0380017150.01.T01	AT4G18880	64.646	99	34	1	17	115	9	106	1.78e-31	123
MsG0380017150.01.T01	AT1G67970	57.732	97	40	1	23	118	18	114	6.76e-31	121
MsG0380017150.01.T01	AT5G45710	59.783	92	37	0	24	115	13	104	2.98e-30	119
MsG0380017150.01.T01	AT5G45710	59.783	92	37	0	24	115	13	104	2.98e-30	119
MsG0380017150.01.T01	AT4G18870	42.553	94	51	1	18	108	137	230	1.17e-20	91.3
MsG0380017150.01.T01	AT4G18870	44.186	86	43	3	25	108	14	96	3.45e-16	78.6
MsG0380017150.01.T01	AT1G77570	38.636	88	49	3	25	108	27	113	2.26e-12	64.7

Find 78 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGTTTGTTTCCAAACTATT+TGG	0.202751	3:+92636368	None:intergenic
AAACAAGGCTCGTTTGGTTT+TGG	0.245774	3:-92636351	MsG0380017150.01.T01:CDS
TGAATCATCATCACTGAAAA+TGG	0.259439	3:-92637569	MsG0380017150.01.T01:exon
GGATTATTAGATCCACATTC+AGG	0.261808	3:+92636389	None:intergenic
TGAAGACGAGTCATATGTTT+AGG	0.266459	3:+92636563	None:intergenic
CTAACTCTAGTGTTTGAAAA+TGG	0.272288	3:+92636971	None:intergenic
AAGCCAATGAACCAGCTTTC+GGG	0.281382	3:-92636602	MsG0380017150.01.T01:CDS
ATCAACAAGTTGGTATGTTT+TGG	0.282286	3:+92637471	None:intergenic
CTATTGATGTAGGTGGATTT+TGG	0.289446	3:-92636023	MsG0380017150.01.T01:three_prime_UTR
TTAACTTCATCATTTGTTAA+TGG	0.296353	3:-92636887	MsG0380017150.01.T01:CDS
GAAGTTGTGCATTTAAAGTT+TGG	0.305380	3:+92635969	None:intergenic
TTAACAAATGATGAAGTTAA+TGG	0.309297	3:+92636890	None:intergenic
ATGAGAATCCTAAGCTAGTT+AGG	0.314254	3:-92636257	MsG0380017150.01.T01:three_prime_UTR
TTGTTGTGTTTGAAGTAGTT+AGG	0.319993	3:+92637358	None:intergenic
ATCTAATAATCCAAATAGTT+TGG	0.322798	3:-92636378	MsG0380017150.01.T01:CDS
AGGAGGTCTCTAGCAAATTC+TGG	0.338598	3:+92637382	None:intergenic
ATGACTCCACCTTCGTTGTT+TGG	0.343318	3:-92637411	MsG0380017150.01.T01:CDS
TAGTTGTTTGTTGCTGTTGT+TGG	0.344004	3:+92636857	None:intergenic
AAAGCCAATGAACCAGCTTT+CGG	0.347409	3:-92636603	MsG0380017150.01.T01:CDS
TGTTGTGTTTGAAGTAGTTA+GGG	0.361431	3:+92637359	None:intergenic
CACAGATCACATCGTCTCTT+GGG	0.368339	3:-92637440	MsG0380017150.01.T01:CDS
GGAAACAAACAAGGCTCGTT+TGG	0.378669	3:-92636357	MsG0380017150.01.T01:CDS
GAGCTTCTTGATGTGTTTGT+TGG	0.386154	3:+92636500	None:intergenic
GAAGATCATGATGATATTGA+TGG	0.395870	3:-92636120	MsG0380017150.01.T01:three_prime_UTR
ATTGAGAACAAAGATAATAT+TGG	0.400288	3:+92636046	None:intergenic
GAAGACGAGTCATATGTTTA+GGG	0.405370	3:+92636564	None:intergenic
TGTTCTCAATCTATTGATGT+AGG	0.411507	3:-92636033	MsG0380017150.01.T01:three_prime_UTR
TAAGAGTTACTTGGAGCTAC+TGG	0.420379	3:+92636701	None:intergenic
ACATTACCACCACCATTCAT+AGG	0.425778	3:+92636638	None:intergenic
TAGCCCGAAAGCTGGTTCAT+TGG	0.429834	3:+92636599	None:intergenic
CCACAGATCACATCGTCTCT+TGG	0.431871	3:-92637441	MsG0380017150.01.T01:CDS
TTGTTCATCAGAGTATTCAT+TGG	0.454805	3:+92636937	None:intergenic
CCACCACCATTCATAGGAGT+TGG	0.459985	3:+92636644	None:intergenic
CTGATGAACAAGTCAACAAC+TGG	0.462821	3:-92636925	MsG0380017150.01.T01:CDS
AGCTCAATAACAATGGTTGA+AGG	0.469701	3:-92636482	MsG0380017150.01.T01:CDS
ACATCACAGCCACAACAAAC+AGG	0.483395	3:-92637046	MsG0380017150.01.T01:CDS
GATGAAGAGTAAGAGTTACT+TGG	0.490480	3:+92636692	None:intergenic
TTAGCAAACTCCCATCTGTC+AGG	0.497806	3:+92637124	None:intergenic
GAAAATGGAAAGAAACTTGG+TGG	0.498648	3:+92636986	None:intergenic
GATTATTAGATCCACATTCA+GGG	0.505417	3:+92636390	None:intergenic
GTGGAACATTGTGATGCTGC+TGG	0.507886	3:+92637005	None:intergenic
TGTGTTTGAAGTAGTTAGGG+AGG	0.509850	3:+92637362	None:intergenic
TCATCAGAGTATTCATTGGA+TGG	0.511281	3:+92636941	None:intergenic
GAAAGATTGTACCTGACAGA+TGG	0.519136	3:-92637135	MsG0380017150.01.T01:CDS
GTTTGAAGTAGTTAGGGAGG+AGG	0.523740	3:+92637365	None:intergenic
TCAAATCCAACTCCTATGAA+TGG	0.530340	3:-92636650	MsG0380017150.01.T01:CDS
AATTGTAATAGCCCGAAAGC+TGG	0.534218	3:+92636591	None:intergenic
TCTCAATCTATTGATGTAGG+TGG	0.534364	3:-92636030	MsG0380017150.01.T01:three_prime_UTR
TTTGAAAATGGAAAGAAACT+TGG	0.548152	3:+92636983	None:intergenic
TGGTGGTGGTAATGTTTCAA+TGG	0.548976	3:-92636630	MsG0380017150.01.T01:CDS
ACTTCATCATTTGTTAATGG+AGG	0.552014	3:-92636884	MsG0380017150.01.T01:CDS
CCACAAAATCAATCCCATCA+TGG	0.552202	3:-92636539	MsG0380017150.01.T01:CDS
AGTTCACATTCATACCATGA+TGG	0.552494	3:+92636525	None:intergenic
ATGTTGATTCCTGTTTGTTG+TGG	0.553850	3:+92637037	None:intergenic
AAAAGAGTGCACCCTGAATG+TGG	0.555827	3:-92636401	MsG0380017150.01.T01:CDS
TTCAATAACACACACAACAC+TGG	0.558866	3:+92637588	None:intergenic
ACAAATGATGAAGTTAATGG+TGG	0.561209	3:+92636893	None:intergenic
ACACTGGTTTAGAGAGGGAG+AGG	0.565479	3:+92637604	None:intergenic
GTTCACATTCATACCATGAT+GGG	0.572426	3:+92636526	None:intergenic
CCAACTCCTATGAATGGTGG+TGG	0.572594	3:-92636644	MsG0380017150.01.T01:CDS
AAAGATTGTACCTGACAGAT+GGG	0.574158	3:-92637134	MsG0380017150.01.T01:CDS
GCTCAATAACAATGGTTGAA+GGG	0.590591	3:-92636481	MsG0380017150.01.T01:CDS
GGAGTTGGATTTGAAGCTTG+TGG	0.599678	3:+92636659	None:intergenic
AAAACTAACTAACAAGTGGA+AGG	0.604739	3:+92636287	None:intergenic
TGGTTGGATCATCAACAAGT+TGG	0.622309	3:+92637461	None:intergenic
CACACAACACTGGTTTAGAG+AGG	0.626575	3:+92637598	None:intergenic
ACAGATCACATCGTCTCTTG+GGG	0.629510	3:-92637439	MsG0380017150.01.T01:CDS
ATCAAGAAGCTCAATAACAA+TGG	0.631659	3:-92636489	MsG0380017150.01.T01:CDS
GAGACGATGTGATCTGTGGT+TGG	0.633776	3:+92637445	None:intergenic
AAATAGTTTGGAAACAAACA+AGG	0.638741	3:-92636366	MsG0380017150.01.T01:CDS
AGGACGCCAAACAACGAAGG+TGG	0.642419	3:+92637405	None:intergenic
ACACAACACTGGTTTAGAGA+GGG	0.651513	3:+92637599	None:intergenic
AATCCAACTCCTATGAATGG+TGG	0.654630	3:-92636647	MsG0380017150.01.T01:CDS
ACTAACTAACAAGTGGAAGG+AGG	0.655564	3:+92636290	None:intergenic
CTTCTACTAGACAACTGTGA+AGG	0.669455	3:-92637544	MsG0380017150.01.T01:CDS
AGGTCTCTAGCAAATTCTGG+AGG	0.693279	3:+92637385	None:intergenic
TGGAGGACGCCAAACAACGA+AGG	0.695849	3:+92637402	None:intergenic
CCAAGAGACGATGTGATCTG+TGG	0.707530	3:+92637441	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTTTTTCTCTGTTTTTTA+GGG	-	Chr3:92636440-92636459	MsG0380017150.01.T01:CDS	15.0%
!!!	TTATTTTTTCTCTGTTTTTT+AGG	-	Chr3:92636439-92636458	MsG0380017150.01.T01:CDS	15.0%
!!	ATCTAATAATCCAAATAGTT+TGG	-	Chr3:92637225-92637244	MsG0380017150.01.T01:intron	20.0%
!!	ATTGAGAACAAAGATAATAT+TGG	+	Chr3:92637560-92637579	None:intergenic	20.0%
!!	GCTAATGAATATTTCAAAAA+AGG	-	Chr3:92636497-92636516	MsG0380017150.01.T01:CDS	20.0%
!!	TTAACAAATGATGAAGTTAA+TGG	+	Chr3:92636716-92636735	None:intergenic	20.0%
!!!	AAAAGATCATGATTTTGATT+TGG	-	Chr3:92637276-92637295	MsG0380017150.01.T01:intron	20.0%
!!!	AAAGATCATGATTTTGATTT+GGG	-	Chr3:92637277-92637296	MsG0380017150.01.T01:intron	20.0%
!!!	TTAACTTCATCATTTGTTAA+TGG	-	Chr3:92636716-92636735	MsG0380017150.01.T01:CDS	20.0%
!	AAATAGTTTGGAAACAAACA+AGG	-	Chr3:92637237-92637256	MsG0380017150.01.T01:intron	25.0%
!	AAGAAAAACTAACTAACAAG+TGG	+	Chr3:92637323-92637342	None:intergenic	25.0%
!	TTGTTTGTTTCCAAACTATT+TGG	+	Chr3:92637238-92637257	None:intergenic	25.0%
!	TTTGAAAATGGAAAGAAACT+TGG	+	Chr3:92636623-92636642	None:intergenic	25.0%
!!	AAAAAAAACCTAACTAGCTT+AGG	+	Chr3:92637357-92637376	None:intergenic	25.0%
	AAAACTAACTAACAAGTGGA+AGG	+	Chr3:92637319-92637338	None:intergenic	30.0%
	ACAAATGATGAAGTTAATGG+TGG	+	Chr3:92636713-92636732	None:intergenic	30.0%
	ATCAAGAAGCTCAATAACAA+TGG	-	Chr3:92637114-92637133	MsG0380017150.01.T01:CDS	30.0%
	CTAACTCTAGTGTTTGAAAA+TGG	+	Chr3:92636635-92636654	None:intergenic	30.0%
	GAAGATCATGATGATATTGA+TGG	-	Chr3:92637483-92637502	MsG0380017150.01.T01:CDS	30.0%
	GATTATTAGATCCACATTCA+GGG	+	Chr3:92637216-92637235	None:intergenic	30.0%
	TGAATCATCATCACTGAAAA+TGG	-	Chr3:92636034-92636053	MsG0380017150.01.T01:three_prime_UTR	30.0%
	TGTTCTCAATCTATTGATGT+AGG	-	Chr3:92637570-92637589	MsG0380017150.01.T01:exon	30.0%
!	ACTTCATCATTTGTTAATGG+AGG	-	Chr3:92636719-92636738	MsG0380017150.01.T01:CDS	30.0%
!	GAAGTTGTGCATTTAAAGTT+TGG	+	Chr3:92637637-92637656	None:intergenic	30.0%
!	TGTTGTGTTTGAAGTAGTTA+GGG	+	Chr3:92636247-92636266	None:intergenic	30.0%
!	TTGTTCATCAGAGTATTCAT+TGG	+	Chr3:92636669-92636688	None:intergenic	30.0%
!	TTGTTGTGTTTGAAGTAGTT+AGG	+	Chr3:92636248-92636267	None:intergenic	30.0%
!!!	ATCAACAAGTTGGTATGTTT+TGG	+	Chr3:92636135-92636154	None:intergenic	30.0%
!!!	GATTATCAAGTTTTGAGTCA+CGG	-	Chr3:92637451-92637470	MsG0380017150.01.T01:CDS	30.0%
	AAAGATTGTACCTGACAGAT+GGG	-	Chr3:92636469-92636488	MsG0380017150.01.T01:CDS	35.0%
	AGCTCAATAACAATGGTTGA+AGG	-	Chr3:92637121-92637140	MsG0380017150.01.T01:CDS	35.0%
	AGTTCACATTCATACCATGA+TGG	+	Chr3:92637081-92637100	None:intergenic	35.0%
	ATGAGAATCCTAAGCTAGTT+AGG	-	Chr3:92637346-92637365	MsG0380017150.01.T01:CDS	35.0%
	GAAAATGGAAAGAAACTTGG+TGG	+	Chr3:92636620-92636639	None:intergenic	35.0%
	GAAGACGAGTCATATGTTTA+GGG	+	Chr3:92637042-92637061	None:intergenic	35.0%
	GAAGAGATGATTGCTTACAT+AGG	+	Chr3:92636300-92636319	None:intergenic	35.0%
	GATGAAGAGTAAGAGTTACT+TGG	+	Chr3:92636914-92636933	None:intergenic	35.0%
	GCTCAATAACAATGGTTGAA+GGG	-	Chr3:92637122-92637141	MsG0380017150.01.T01:CDS	35.0%
	GGATTATTAGATCCACATTC+AGG	+	Chr3:92637217-92637236	None:intergenic	35.0%
	GTTCACATTCATACCATGAT+GGG	+	Chr3:92637080-92637099	None:intergenic	35.0%
	TCAAATCCAACTCCTATGAA+TGG	-	Chr3:92636953-92636972	MsG0380017150.01.T01:CDS	35.0%
	TCTCAATCTATTGATGTAGG+TGG	-	Chr3:92637573-92637592	MsG0380017150.01.T01:five_prime_UTR	35.0%
	TGAAGACGAGTCATATGTTT+AGG	+	Chr3:92637043-92637062	None:intergenic	35.0%
	TTCAATAACACACACAACAC+TGG	+	Chr3:92636018-92636037	None:intergenic	35.0%
!	TAGTTGTTTGTTGCTGTTGT+TGG	+	Chr3:92636749-92636768	None:intergenic	35.0%
!	TCATCAGAGTATTCATTGGA+TGG	+	Chr3:92636665-92636684	None:intergenic	35.0%
!!	ATGTTGATTCCTGTTTGTTG+TGG	+	Chr3:92636569-92636588	None:intergenic	35.0%
!!	CTATTGATGTAGGTGGATTT+TGG	-	Chr3:92637580-92637599	MsG0380017150.01.T01:five_prime_UTR	35.0%
	AAAGCCAATGAACCAGCTTT+CGG	-	Chr3:92637000-92637019	MsG0380017150.01.T01:CDS	40.0%
	AATCCAACTCCTATGAATGG+TGG	-	Chr3:92636956-92636975	MsG0380017150.01.T01:CDS	40.0%
	AATTGTAATAGCCCGAAAGC+TGG	+	Chr3:92637015-92637034	None:intergenic	40.0%
	ACATTACCACCACCATTCAT+AGG	+	Chr3:92636968-92636987	None:intergenic	40.0%
	ACTAACTAACAAGTGGAAGG+AGG	+	Chr3:92637316-92637335	None:intergenic	40.0%
	CCACAAAATCAATCCCATCA+TGG	-	Chr3:92637064-92637083	MsG0380017150.01.T01:CDS	40.0%
	CTGATGAACAAGTCAACAAC+TGG	-	Chr3:92636678-92636697	MsG0380017150.01.T01:CDS	40.0%
	CTTCTACTAGACAACTGTGA+AGG	-	Chr3:92636059-92636078	MsG0380017150.01.T01:three_prime_UTR	40.0%
	GAAAGATTGTACCTGACAGA+TGG	-	Chr3:92636468-92636487	MsG0380017150.01.T01:CDS	40.0%
	GAGCTTCTTGATGTGTTTGT+TGG	+	Chr3:92637106-92637125	None:intergenic	40.0%
	TAAGAGTTACTTGGAGCTAC+TGG	+	Chr3:92636905-92636924	None:intergenic	40.0%
	TGGTTGGATCATCAACAAGT+TGG	+	Chr3:92636145-92636164	None:intergenic	40.0%
!	TGCAGCAAGACTAAGCTTTT+TGG	-	Chr3:92637160-92637179	MsG0380017150.01.T01:intron	40.0%
!	TGTGTTTGAAGTAGTTAGGG+AGG	+	Chr3:92636244-92636263	None:intergenic	40.0%
!!	AAACAAGGCTCGTTTGGTTT+TGG	-	Chr3:92637252-92637271	MsG0380017150.01.T01:intron	40.0%
!!	ACACAACACTGGTTTAGAGA+GGG	+	Chr3:92636007-92636026	None:intergenic	40.0%
!!	CCATGATGGGATTGATTTTG+TGG	+	Chr3:92637067-92637086	None:intergenic	40.0%
!!	TGGTGGTGGTAATGTTTCAA+TGG	-	Chr3:92636973-92636992	MsG0380017150.01.T01:CDS	40.0%
!!!	CAAGTTGGTATGTTTTGGTG+AGG	+	Chr3:92636130-92636149	None:intergenic	40.0%
!!!	TATCAAGTTTTGAGTCACGG+AGG	-	Chr3:92637454-92637473	MsG0380017150.01.T01:CDS	40.0%
!!!	TGGTATGTTTTGGTGAGGAA+TGG	+	Chr3:92636125-92636144	None:intergenic	40.0%
	AAGCCAATGAACCAGCTTTC+GGG	-	Chr3:92637001-92637020	MsG0380017150.01.T01:CDS	45.0%
	ACAGATCACATCGTCTCTTG+GGG	-	Chr3:92636164-92636183	MsG0380017150.01.T01:three_prime_UTR	45.0%
	ACATCACAGCCACAACAAAC+AGG	-	Chr3:92636557-92636576	MsG0380017150.01.T01:CDS	45.0%
	AGGAGGTCTCTAGCAAATTC+TGG	+	Chr3:92636224-92636243	None:intergenic	45.0%
	AGGTCTCTAGCAAATTCTGG+AGG	+	Chr3:92636221-92636240	None:intergenic	45.0%
	ATGACTCCACCTTCGTTGTT+TGG	-	Chr3:92636192-92636211	MsG0380017150.01.T01:three_prime_UTR	45.0%
	CACAGATCACATCGTCTCTT+GGG	-	Chr3:92636163-92636182	MsG0380017150.01.T01:three_prime_UTR	45.0%
	GGAAACAAACAAGGCTCGTT+TGG	-	Chr3:92637246-92637265	MsG0380017150.01.T01:intron	45.0%
	TAACGAATCGAAGCGACAAG+AGG	+	Chr3:92636369-92636388	None:intergenic	45.0%
	TTAGCAAACTCCCATCTGTC+AGG	+	Chr3:92636482-92636501	None:intergenic	45.0%
!	AAAAGAGTGCACCCTGAATG+TGG	-	Chr3:92637202-92637221	MsG0380017150.01.T01:intron	45.0%
!	GGAGTTGGATTTGAAGCTTG+TGG	+	Chr3:92636947-92636966	None:intergenic	45.0%
!	GTTTGAAGTAGTTAGGGAGG+AGG	+	Chr3:92636241-92636260	None:intergenic	45.0%
!	TTCAGGGTGCACTCTTTTCT+TGG	+	Chr3:92637200-92637219	None:intergenic	45.0%
!	TTTTGGTGAGGAATGGAGCT+GGG	+	Chr3:92636118-92636137	None:intergenic	45.0%
!!	CACACAACACTGGTTTAGAG+AGG	+	Chr3:92636008-92636027	None:intergenic	45.0%
	CCAACTCCTATGAATGGTGG+TGG	-	Chr3:92636959-92636978	MsG0380017150.01.T01:CDS	50.0%
	CCAAGAGACGATGTGATCTG+TGG	+	Chr3:92636165-92636184	None:intergenic	50.0%
	CCACAGATCACATCGTCTCT+TGG	-	Chr3:92636162-92636181	MsG0380017150.01.T01:three_prime_UTR	50.0%
	CCACCACCATTCATAGGAGT+TGG	+	Chr3:92636962-92636981	None:intergenic	50.0%
	GAGACGATGTGATCTGTGGT+TGG	+	Chr3:92636161-92636180	None:intergenic	50.0%
	GTGGAACATTGTGATGCTGC+TGG	+	Chr3:92636601-92636620	None:intergenic	50.0%
!	TAGCCCGAAAGCTGGTTCAT+TGG	+	Chr3:92637007-92637026	None:intergenic	50.0%
!!	ACACTGGTTTAGAGAGGGAG+AGG	+	Chr3:92636002-92636021	None:intergenic	50.0%
!!	GTTTTGGTGAGGAATGGAGC+TGG	+	Chr3:92636119-92636138	None:intergenic	50.0%
!!	TTTTGAGTCACGGAGGAGCT+AGG	-	Chr3:92637461-92637480	MsG0380017150.01.T01:CDS	50.0%
	AGGACGCCAAACAACGAAGG+TGG	+	Chr3:92636201-92636220	None:intergenic	55.0%
	TGGAGGACGCCAAACAACGA+AGG	+	Chr3:92636204-92636223	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	92635955	92637670	92635955	ID=MsG0380017150.01;Name=MsG0380017150.01
Chr3	mRNA	92635955	92637670	92635955	ID=MsG0380017150.01.T01;Parent=MsG0380017150.01;Name=MsG0380017150.01.T01;_AED=0.10;_eAED=0.10;_QI=98\|1\|1\|1\|1\|1\|2\|340\|372
Chr3	exon	92635955	92637164	92635955	ID=MsG0380017150.01.T01:exon:20762;Parent=MsG0380017150.01.T01
Chr3	exon	92637324	92637670	92637324	ID=MsG0380017150.01.T01:exon:20761;Parent=MsG0380017150.01.T01
Chr3	five_prime_UTR	92637573	92637670	92637573	ID=MsG0380017150.01.T01:five_prime_utr;Parent=MsG0380017150.01.T01
Chr3	CDS	92637324	92637572	92637324	ID=MsG0380017150.01.T01:cds;Parent=MsG0380017150.01.T01
Chr3	CDS	92636295	92637164	92636295	ID=MsG0380017150.01.T01:cds;Parent=MsG0380017150.01.T01
Chr3	three_prime_UTR	92635955	92636294	92635955	ID=MsG0380017150.01.T01:three_prime_utr;Parent=MsG0380017150.01.T01

Gene Sequence

>MsG0380017150.01.T01

ATGGCTCTTCTACTAGACAACTGTGAAGGCATTTTACTCTCACTAGACTCACACAAATCAGTCCCAGCTCCATTCCTCACCAAAACATACCAACTTGTTGATGATCCAACCACAGATCACATCGTCTCTTGGGGTGAAGATGACTCCACCTTCGTTGTTTGGCGTCCTCCAGAATTTGCTAGAGACCTCCTCCCTAACTACTTCAAACACAACAACTTCTCTAGCTTCGTTCGACAACTCAACACCTATGGTTTTAGAAAGATTGTACCTGACAGATGGGAGTTTGCTAATGAATATTTCAAAAAAGGAGAAAAGCATTTGCTTTGTGAGATTCATAGAAGAAAAACATCACAGCCACAACAAACAGGAATCAACATGAATCATCACCAGCAGCATCACAATGTTCCACCAAGTTTCTTTCCATTTTCAAACACTAGAGTTAGCATTTCTCCATCCAATGAATACTCTGATGAACAAGTCAACAACTGGTGTGACTCTCCACCATTAACTTCATCATTTGTTAATGGAGGAACACCAACAACAGCAACAAACAACTATAACAGTTCTGTTACTGCTCTTTCTGAAGACAATGAAAGACTTAGAAGAAGTAACAACATGTTAATGTCTGAGCTAGCTCACATGAAGAAACTTTACAATGATATTATCTACTTTGTTCAGAATCATGTTAAACCAGTAGCTCCAAGTAACTCTTACTCTTCATCTTTTCTACTTCCACAAGCTTCAAATCCAACTCCTATGAATGGTGGTGGTAATGTTTCAATGGTGCAAAAGCCAATGAACCAGCTTTCGGGCTATTACAATTCTAACCCTAAACATATGACTCGTCTTCAACCACAAAATCAATCCCATCATGGTATGAATGTGAACTCTCCAACAAACACATCAAGAAGCTCAATAACAATGGTTGAAGGGCTTAACAGTAATAACTGCAGCAAGACTAAGCTTTTTGGAGTATCACTTCAGTCCAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAATCCAAATAGTTTGGAAACAAACAAGGCTCGTTTGGTTTTGGAAAAAGATCATGATTTTGATTTGGGTTTGAATCTCATGCCTCCTTCCACTTGTTAG

Protein sequence

>MsG0380017150.01.T01

MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTSQPQQTGINMNHHQQHHNVPPSFFPFSNTRVSISPSNEYSDEQVNNWCDSPPLTSSFVNGGTPTTATNNYNSSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSFLLPQASNPTPMNGGGNVSMVQKPMNQLSGYYNSNPKHMTRLQPQNQSHHGMNVNSPTNTSRSSITMVEGLNSNNCSKTKLFGVSLQSKKRVHPECGSNNPNSLETNKARLVLEKDHDFDLGLNLMPPSTC*