AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021456.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021456.01.T01 MTR_4g073720 97.256 328 5 1 46 373 21 344 0.0 630
MsG0480021456.01.T01 MTR_5g022350 67.083 240 75 2 34 273 16 251 9.16e-116 339
MsG0480021456.01.T01 MTR_8g075510 70.667 225 62 2 47 270 28 249 2.91e-113 330
MsG0480021456.01.T01 MTR_8g075510 63.462 260 91 2 47 305 28 284 6.73e-112 329
MsG0480021456.01.T01 MTR_1g025420 66.387 238 71 5 46 274 19 256 2.15e-102 305
MsG0480021456.01.T01 MTR_1g025420 66.667 234 69 5 46 271 19 251 3.18e-101 300
MsG0480021456.01.T01 MTR_8g037890 52.721 294 124 6 36 314 11 304 1.46e-95 288
MsG0480021456.01.T01 MTR_8g075550 61.250 240 81 4 46 274 24 262 2.26e-94 284
MsG0480021456.01.T01 MTR_3g114030 63.478 230 76 5 46 267 3 232 4.64e-94 281
MsG0480021456.01.T01 MTR_5g022310 55.426 258 104 4 45 291 21 278 4.86e-91 276
MsG0480021456.01.T01 MTR_5g022310 58.228 237 88 4 45 271 21 256 1.66e-90 273
MsG0480021456.01.T01 MTR_4g073730 57.269 227 89 3 47 265 22 248 3.60e-87 265
MsG0480021456.01.T01 MTR_8g056820 57.143 238 95 5 36 266 11 248 7.27e-87 263
MsG0480021456.01.T01 MTR_4g073730 57.269 227 89 3 47 265 22 248 7.58e-87 266
MsG0480021456.01.T01 MTR_6g079580 55.357 224 93 4 47 265 19 240 6.39e-86 260
MsG0480021456.01.T01 MTR_3g111620 55.263 228 94 5 48 269 25 250 2.41e-83 254
MsG0480021456.01.T01 MTR_8g036215 55.804 224 94 3 45 264 15 237 3.86e-83 253
MsG0480021456.01.T01 MTR_1g021945 56.637 226 90 4 50 269 26 249 1.89e-82 252
MsG0480021456.01.T01 MTR_8g107140 55.251 219 91 4 54 267 31 247 6.01e-81 248
MsG0480021456.01.T01 MTR_7g102380 51.064 235 108 5 39 267 10 243 2.07e-78 241
MsG0480021456.01.T01 MTR_1g062590 54.825 228 96 5 44 265 16 242 4.71e-78 240
MsG0480021456.01.T01 MTR_1g062630 54.867 226 95 5 47 266 19 243 9.09e-78 240
MsG0480021456.01.T01 MTR_1g062350 54.185 227 97 5 47 267 19 244 1.05e-74 232
MsG0480021456.01.T01 MTR_1g062370 54.185 227 97 5 47 267 19 244 1.13e-74 232
MsG0480021456.01.T01 MTR_2g069660 52.423 227 100 4 46 265 18 243 1.77e-74 231
MsG0480021456.01.T01 MTR_1g062660 53.913 230 99 5 44 267 16 244 2.22e-74 231
MsG0480021456.01.T01 MTR_1g062340 54.185 227 97 5 47 267 19 244 5.10e-74 230
MsG0480021456.01.T01 MTR_5g059200 48.000 250 119 7 48 294 27 268 2.16e-71 224
MsG0480021456.01.T01 MTR_2g068655 49.351 231 111 4 46 270 27 257 1.22e-69 221
MsG0480021456.01.T01 MTR_2g068030 49.772 219 104 4 52 264 25 243 1.43e-69 219
MsG0480021456.01.T01 MTR_2g067980 50.000 236 106 5 44 267 14 249 4.49e-68 232
MsG0480021456.01.T01 MTR_3g068015 45.982 224 114 4 48 265 26 248 1.91e-67 213
MsG0480021456.01.T01 MTR_7g062610 46.875 224 113 3 47 265 20 242 4.20e-65 207
MsG0480021456.01.T01 MTR_6g009480 45.575 226 113 6 50 266 29 253 2.32e-62 201
MsG0480021456.01.T01 MTR_4g063630 47.085 223 106 7 52 264 31 251 3.56e-62 200
MsG0480021456.01.T01 MTR_5g022350 66.438 146 45 2 34 179 81 222 2.03e-60 194
MsG0480021456.01.T01 MTR_1g062690 46.903 226 91 5 47 267 19 220 1.83e-58 189
MsG0480021456.01.T01 MTR_5g010635 46.575 219 97 10 50 265 24 225 3.89e-49 166
MsG0480021456.01.T01 MTR_5g023850 41.079 241 94 8 44 271 17 222 3.49e-48 163
MsG0480021456.01.T01 MTR_2g067990 42.291 227 101 8 46 267 23 224 6.60e-44 163
MsG0480021456.01.T01 MTR_8g096900 42.273 220 104 10 50 265 48 248 8.83e-44 152
MsG0480021456.01.T01 MTR_5g010640 41.256 223 108 9 52 265 28 236 1.80e-42 148
MsG0480021456.01.T01 MTR_8g089020 47.134 157 59 3 104 257 21 156 6.04e-41 142
MsG0480021456.01.T01 MTR_2g067970 41.270 189 102 5 92 272 2 189 4.19e-39 149
MsG0480021456.01.T01 MTR_7g076360 36.321 212 77 3 44 255 2 155 2.12e-37 133
MsG0480021456.01.T01 MTR_2g063150 32.727 220 135 6 44 257 30 242 6.35e-34 126
MsG0480021456.01.T01 MTR_1g062390 31.858 226 133 6 51 266 25 239 3.06e-29 114
MsG0480021456.01.T01 MTR_8g096920 50.427 117 47 6 50 164 19 126 1.65e-24 99.0
MsG0480021456.01.T01 MTR_8g096910 46.479 142 61 8 50 189 22 150 1.75e-24 99.0
MsG0480021456.01.T01 MTR_1g062640 39.130 115 68 2 76 189 33 146 1.01e-17 79.7
MsG0480021456.01.T01 MTR_3g081550 50.526 95 40 4 134 221 15 109 2.85e-16 74.7
MsG0480021456.01.T01 MTR_5g068670 48.864 88 34 4 87 166 5 89 6.48e-14 68.6
MsG0480021456.01.T01 MTR_1g050170 64.444 45 16 0 1 45 1 45 4.87e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021456.01.T01 AT4G38660 64.286 336 97 4 46 374 26 345 2.46e-140 403
MsG0480021456.01.T01 AT4G38660 64.286 336 97 4 46 374 4 323 4.73e-140 401
MsG0480021456.01.T01 AT4G24180 69.959 243 65 3 39 273 22 264 1.11e-118 347
MsG0480021456.01.T01 AT4G24180 71.008 238 61 3 44 273 22 259 1.33e-118 346
MsG0480021456.01.T01 AT4G24180 70.168 238 63 3 39 268 22 259 1.12e-116 339
MsG0480021456.01.T01 AT4G24180 71.245 233 59 3 44 268 22 254 1.35e-116 339
MsG0480021456.01.T01 AT4G24180 68.636 220 61 3 39 250 22 241 2.29e-104 311
MsG0480021456.01.T01 AT4G24180 69.767 215 57 3 44 250 22 236 4.84e-104 310
MsG0480021456.01.T01 AT1G75800 54.082 294 118 7 46 328 19 306 2.30e-95 288
MsG0480021456.01.T01 AT1G20030 64.502 231 72 5 46 266 16 246 3.57e-95 287
MsG0480021456.01.T01 AT1G20030 65.487 226 68 5 51 266 4 229 3.27e-94 284
MsG0480021456.01.T01 AT4G36010 58.468 248 90 5 46 280 19 266 2.57e-92 279
MsG0480021456.01.T01 AT4G36010 58.468 248 90 5 46 280 19 266 2.57e-92 279
MsG0480021456.01.T01 AT1G19320 59.402 234 85 4 39 264 15 246 6.79e-90 271
MsG0480021456.01.T01 AT1G75030 59.292 226 82 5 48 266 22 244 3.86e-87 264
MsG0480021456.01.T01 AT2G17860 57.759 232 86 5 50 270 23 253 1.96e-86 262
MsG0480021456.01.T01 AT1G18250 56.502 223 90 4 50 267 22 242 1.53e-84 257
MsG0480021456.01.T01 AT1G18250 56.000 225 92 4 48 267 19 241 1.56e-84 257
MsG0480021456.01.T01 AT1G75050 59.193 223 82 5 50 266 25 244 2.05e-84 257
MsG0480021456.01.T01 AT1G75040 58.667 225 85 5 45 265 19 239 4.24e-84 256
MsG0480021456.01.T01 AT1G73620 56.250 224 91 4 48 266 40 261 2.03e-83 255
MsG0480021456.01.T01 AT4G38670 58.929 224 83 5 51 265 24 247 9.04e-83 254
MsG0480021456.01.T01 AT4G38670 58.929 224 83 5 51 265 24 247 9.04e-83 254
MsG0480021456.01.T01 AT4G38670 58.929 224 83 5 51 265 8 231 2.00e-82 252
MsG0480021456.01.T01 AT5G24620 52.419 248 102 6 50 282 25 271 4.97e-81 254
MsG0480021456.01.T01 AT5G24620 52.419 248 102 6 50 282 80 326 6.61e-81 255
MsG0480021456.01.T01 AT5G24620 52.419 248 102 6 50 282 101 347 7.64e-81 256
MsG0480021456.01.T01 AT4G36000 53.785 251 72 7 126 375 1 208 1.35e-76 235
MsG0480021456.01.T01 AT4G36000 53.785 251 72 7 126 375 1 208 1.35e-76 235
MsG0480021456.01.T01 AT1G77700 50.901 222 99 6 48 266 59 273 7.94e-73 230
MsG0480021456.01.T01 AT1G77700 50.901 222 99 6 48 266 59 273 2.51e-72 228
MsG0480021456.01.T01 AT1G77700 50.901 222 99 6 48 266 87 301 2.69e-72 229
MsG0480021456.01.T01 AT5G38280 47.131 244 113 5 46 273 21 264 8.14e-72 236
MsG0480021456.01.T01 AT5G38280 47.131 244 113 5 46 273 21 264 1.55e-71 236
MsG0480021456.01.T01 AT5G40020 46.637 223 112 3 51 267 29 250 2.98e-67 213
MsG0480021456.01.T01 AT2G28790 50.901 222 98 7 52 264 54 273 1.27e-64 207
MsG0480021456.01.T01 AT2G28790 50.901 222 98 7 52 264 29 248 1.43e-64 206
MsG0480021456.01.T01 AT5G02140 45.045 222 117 3 49 265 20 241 3.51e-61 199
MsG0480021456.01.T01 AT5G02140 45.045 222 117 3 49 265 20 241 3.66e-61 197
MsG0480021456.01.T01 AT4G18253 39.474 228 129 3 47 270 21 243 5.36e-52 173
MsG0480021456.01.T01 AT1G70250 39.764 254 130 8 51 291 146 389 1.73e-51 184
MsG0480021456.01.T01 AT4G11650 44.538 238 111 10 48 281 21 241 7.10e-50 168
MsG0480021456.01.T01 AT4G18250 40.506 237 132 5 48 279 55 287 7.20e-44 161
MsG0480021456.01.T01 AT5G24620 51.429 140 55 4 156 282 15 154 1.29e-38 140
MsG0480021456.01.T01 AT2G24810 61.039 77 27 1 191 264 116 192 2.31e-25 102

Find 140 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTTGGTCCGGCCGGTTC+TGG 0.121811 4:+58073829 MsG0480021456.01.T01:CDS
TCTGCATTTGTTTACTCTTT+TGG 0.167211 4:+58075293 MsG0480021456.01.T01:CDS
GTTAACTGCCGAGGGATATT+TGG 0.174761 4:+58072570 MsG0480021456.01.T01:CDS
TTTGTTAAATGAAATGTAAA+TGG 0.314121 4:+58075389 MsG0480021456.01.T01:three_prime_UTR
AAAACGCAACAATGGAGTTT+TGG 0.314199 4:+58072446 None:intergenic
TATTCAGTTCCCGTAAATTC+AGG 0.318296 4:+58075167 MsG0480021456.01.T01:CDS
GTGAACTCAGCTAGGGTTGC+TGG 0.336395 4:-58073954 None:intergenic
CCAGGAGCAGGGACAGTGAT+AGG 0.340612 4:+58075077 MsG0480021456.01.T01:CDS
TGATCCGGACCCTGAATTTA+CGG 0.349274 4:-58075177 None:intergenic
ACTGTCCCTGCTCCTGGTAT+TGG 0.357647 4:-58075071 None:intergenic
AGTTAACTGTCGAAGTTTAC+AGG 0.361144 4:-58072554 None:intergenic
TTTATTTACCTTGGAGAAGA+TGG 0.363744 4:-58074341 None:intergenic
CGGTTGGTCCGGCCGGTTCT+GGG 0.371851 4:+58073830 MsG0480021456.01.T01:CDS
CCAGAACCGGCCGGACCAAC+CGG 0.372349 4:-58073829 None:intergenic
GGTATTGGTGTTGAGGTCAT+TGG 0.375177 4:-58075056 None:intergenic
GTTGAGGTCATTGGAGTTGT+TGG 0.375805 4:-58075047 None:intergenic
TTAACTGCCGAGGGATATTT+GGG 0.378403 4:+58072571 MsG0480021456.01.T01:CDS
TTAACTCCGCTGGACATTGC+TGG 0.382982 4:-58074103 None:intergenic
TCCGGATCAGCATCTAATTC+AGG 0.394047 4:+58075191 MsG0480021456.01.T01:CDS
CTCCAGCCGGTTGGTCCGGC+CGG 0.396644 4:+58073823 MsG0480021456.01.T01:CDS
TACGACGTGAGTCTCGTTGA+TGG 0.402827 4:+58074002 MsG0480021456.01.T01:CDS
GTTGGAACAGGATCTGAAAA+TGG 0.408945 4:+58075110 MsG0480021456.01.T01:CDS
GATCCGGACCCTGAATTTAC+GGG 0.410876 4:-58075176 None:intergenic
ACAAATGTGCCTACACAGTA+TGG 0.411373 4:+58073715 MsG0480021456.01.T01:CDS
CAAGCTCCAGCCGGTTGGTC+CGG 0.411921 4:+58073819 MsG0480021456.01.T01:CDS
GGCCGGTTCTGGGCTCGAAC+CGG 0.412457 4:+58073840 MsG0480021456.01.T01:CDS
CTGTCGAAGTTTACAGGATC+CGG 0.412474 4:-58072548 None:intergenic
TAGGCGTAGCTATACGATCT+AGG 0.413391 4:-58074260 None:intergenic
AAGAGCGCGTGTGAGGCTTT+TGG 0.414184 4:+58074149 MsG0480021456.01.T01:CDS
AAGGTGGGTGGTTTACAATA+AGG 0.418882 4:-58075485 None:intergenic
AAACCGGTGCTTCCGAGTGT+TGG 0.422655 4:-58073765 None:intergenic
TCAGATCCTGTTCCAACCTC+AGG 0.424740 4:-58075104 None:intergenic
AACCGGTGCTTCCGAGTGTT+GGG 0.429937 4:-58073764 None:intergenic
TCGGGTATGTGTGAGTCCAC+CGG 0.437031 4:+58074062 MsG0480021456.01.T01:CDS
GGCTTGTTGCTCACTAAAGC+TGG 0.439918 4:+58075450 MsG0480021456.01.T01:three_prime_UTR
ACCAGAGCCTTCAACAATCA+TGG 0.440414 4:-58074036 None:intergenic
AACCGGTTCGAGCCCAGAAC+CGG 0.440678 4:-58073842 None:intergenic
CGCGCCACTACAACAATACT+CGG 0.445194 4:-58074177 None:intergenic
TTCTTGTGGAAGCTCGAAAC+CGG 0.455126 4:-58073781 None:intergenic
CCTATCACTGTCCCTGCTCC+TGG 0.456736 4:-58075077 None:intergenic
GAGTTCACTCTTGGCACTAT+AGG 0.458610 4:+58073969 MsG0480021456.01.T01:CDS
TGGATCATATTTAGCTGGAT+TGG 0.461151 4:+58075241 MsG0480021456.01.T01:CDS
GTTGAAGGCTCTGGTGGGTC+GGG 0.465729 4:+58074044 MsG0480021456.01.T01:CDS
AATCTACCCATGATTGTTGA+AGG 0.467465 4:+58074029 MsG0480021456.01.T01:CDS
AACTTCGACGGATCCGGCTC+CGG 0.467634 4:+58073867 MsG0480021456.01.T01:CDS
AACCGGCCGGACCAACCGGC+TGG 0.468762 4:-58073825 None:intergenic
TTGTAGACCGTCGATTTACT+CGG 0.469194 4:+58074217 MsG0480021456.01.T01:CDS
CGGGTATGTGTGAGTCCACC+GGG 0.470901 4:+58074063 MsG0480021456.01.T01:CDS
CCCATGATTGTTGAAGGCTC+TGG 0.472347 4:+58074035 MsG0480021456.01.T01:CDS
TATTGTTGTAGTGGCGCGTA+TGG 0.473651 4:+58074182 MsG0480021456.01.T01:CDS
TCAGCATCTAATTCAGGATC+AGG 0.473729 4:+58075197 MsG0480021456.01.T01:CDS
GGTTGCTGGTGGTGCAGCTC+CGG 0.475246 4:-58073940 None:intergenic
GTCTCCGGTAAGACATGAAC+CGG 0.475517 4:-58073886 None:intergenic
GGTTGCAACTTCGACGGATC+CGG 0.475598 4:+58073861 MsG0480021456.01.T01:CDS
CCACCCACCTTAAGATTCGT+TGG 0.475637 4:+58075497 MsG0480021456.01.T01:three_prime_UTR
TTGTTAAATGAAATGTAAAT+GGG 0.477170 4:+58075390 MsG0480021456.01.T01:three_prime_UTR
GGGACTCCTGAGGTTGGAAC+AGG 0.482015 4:+58075098 MsG0480021456.01.T01:CDS
CCTTGGAGAAGATGGACAAA+AGG 0.482274 4:-58074333 None:intergenic
GCAGATGGATCATATTTAGC+TGG 0.484088 4:+58075236 MsG0480021456.01.T01:CDS
CGCACTTTCCAAGCTCCAGC+CGG 0.485696 4:+58073810 MsG0480021456.01.T01:CDS
CCTGCATTTGCTAGAATACC+TGG 0.487206 4:-58073738 None:intergenic
GTTCCCGTAAATTCAGGGTC+CGG 0.490170 4:+58075173 MsG0480021456.01.T01:CDS
CGGACCAACCGGCTGGAGCT+TGG 0.491158 4:-58073818 None:intergenic
TCCTGAATTAGATGCTGATC+CGG 0.492799 4:-58075192 None:intergenic
TGTTGAAGGCTCTGGTGGGT+CGG 0.495865 4:+58074043 MsG0480021456.01.T01:CDS
TTAACTGCCGAGGCTTTCCT+TGG 0.497254 4:-58072519 None:intergenic
GGCTCCGGTTCATGTCTTAC+CGG 0.498319 4:+58073882 MsG0480021456.01.T01:CDS
CATGTTTGAGCCACAGTCTC+CGG 0.506120 4:-58073901 None:intergenic
TGCTCCTGGTATTGGTGTTG+AGG 0.514274 4:-58075063 None:intergenic
TCTGAAGCTCTTAACTCCGC+TGG 0.518210 4:-58074113 None:intergenic
ATGATTGTTGAAGGCTCTGG+TGG 0.522224 4:+58074038 MsG0480021456.01.T01:CDS
ATTCAGTTCCCGTAAATTCA+GGG 0.523849 4:+58075168 MsG0480021456.01.T01:CDS
CCTCGGCAGTTAACTGCAGC+CGG 0.525517 4:+58072529 MsG0480021456.01.T01:CDS
GGTAAGACATGAACCGGAGC+CGG 0.526054 4:-58073880 None:intergenic
ACCCTAGCTGAGTTCACTCT+TGG 0.527571 4:+58073960 MsG0480021456.01.T01:CDS
ACGGGTACAGACACACCCAT+TGG 0.533892 4:+58075143 MsG0480021456.01.T01:CDS
ATGGTAGAATGCAACGGTGC+CGG 0.536138 4:+58073921 MsG0480021456.01.T01:CDS
CGGGTACAGACACACCCATT+GGG 0.537883 4:+58075144 MsG0480021456.01.T01:CDS
GGATCCGTCGAAGTTGCAAC+CGG 0.540266 4:-58073859 None:intergenic
GTGATAGGGACTCCTGAGGT+TGG 0.541020 4:+58075092 MsG0480021456.01.T01:CDS
ACGGGAACTGAATACCCAAT+GGG 0.541906 4:-58075158 None:intergenic
AGCCCAACACTCGGAAGCAC+CGG 0.545623 4:+58073762 MsG0480021456.01.T01:CDS
CTTTCCAAGCTCCAGCCGGT+TGG 0.546315 4:+58073814 MsG0480021456.01.T01:CDS
GGAGAAACCATGCTTGCAGA+TGG 0.549482 4:+58075221 MsG0480021456.01.T01:CDS
CGCGTGTAAGAGCGCGTGTG+AGG 0.556474 4:+58074142 MsG0480021456.01.T01:CDS
TGCCAAGAGTGAACTCAGCT+AGG 0.556861 4:-58073962 None:intergenic
TCAACACCAATACCAGGAGC+AGG 0.558407 4:+58075065 MsG0480021456.01.T01:CDS
AGGCGTAGCTATACGATCTA+GGG 0.561666 4:-58074259 None:intergenic
ATATGATCCATCTGCAAGCA+TGG 0.561786 4:-58075228 None:intergenic
GCCAAGAGTGAACTCAGCTA+GGG 0.562984 4:-58073961 None:intergenic
TATTTAGCTGGATTGGCCAT+GGG 0.568640 4:+58075248 MsG0480021456.01.T01:CDS
CAGGAGCAGGGACAGTGATA+GGG 0.571920 4:+58075078 MsG0480021456.01.T01:CDS
AACATTTCCGAGTAAATCGA+CGG 0.574542 4:-58074224 None:intergenic
CGGAGACTGTGGCTCAAACA+TGG 0.576529 4:+58073902 MsG0480021456.01.T01:CDS
CCAGAGCCTTCAACAATCAT+GGG 0.576787 4:-58074035 None:intergenic
CCGGCTGCAGTTAACTGCCG+AGG 0.577473 4:-58072529 None:intergenic
CCAACGAATCTTAAGGTGGG+TGG 0.577670 4:-58075497 None:intergenic
TGTGCCTACACAGTATGGCC+AGG 0.579329 4:+58073720 MsG0480021456.01.T01:CDS
CCAGGTATTCTAGCAAATGC+AGG 0.579356 4:+58073738 MsG0480021456.01.T01:CDS
TGCAGATGAAGTTGTTGTAG+AGG 0.581360 4:-58075276 None:intergenic
TAGTGGCGCGTATGGTTCAC+CGG 0.583066 4:+58074190 MsG0480021456.01.T01:CDS
ACATTTGTTTACAAATGTGA+AGG 0.586021 4:-58073700 None:intergenic
ATATTTAGCTGGATTGGCCA+TGG 0.590981 4:+58075247 MsG0480021456.01.T01:CDS
GTTCAGATCGGAAGTACACC+CGG 0.591972 4:-58074081 None:intergenic
TACGGGAACTGAATACCCAA+TGG 0.595273 4:-58075159 None:intergenic
TTTCCAACGAATCTTAAGGT+GGG 0.596412 4:-58075500 None:intergenic
TTGTTCTTGTAACAAAACTT+CGG 0.602096 4:+58072486 MsG0480021456.01.T01:CDS
GCGGAGTTAAGAGCTTCAGA+TGG 0.606315 4:+58074116 MsG0480021456.01.T01:CDS
TGGACATTGCTGGTTCAGAT+CGG 0.606939 4:-58074093 None:intergenic
GGTTCGAGCCCAGAACCGGC+CGG 0.616663 4:-58073838 None:intergenic
ATGACCTCAACACCAATACC+AGG 0.616871 4:+58075059 MsG0480021456.01.T01:CDS
TTGACTACCAAGGAAAGCCT+CGG 0.618191 4:+58072512 MsG0480021456.01.T01:CDS
TAATTTACCCAAATATCCCT+CGG 0.619423 4:-58072578 None:intergenic
TACAAGAACAAAACTGGCAT+AGG 0.619757 4:-58072474 None:intergenic
ATCGACGGTCTACAAGTAGC+CGG 0.622951 4:-58074209 None:intergenic
ACTTCGACAGTTAACTGCCG+AGG 0.630134 4:+58072561 MsG0480021456.01.T01:CDS
AATGCAGGTAGCCCAACACT+CGG 0.635714 4:+58073753 MsG0480021456.01.T01:CDS
AGTCCCGAGTATTGTTGTAG+TGG 0.636472 4:+58074173 MsG0480021456.01.T01:CDS
AATACCTGGCCATACTGTGT+AGG 0.637300 4:-58073724 None:intergenic
CGAACCGGTTGCAACTTCGA+CGG 0.637688 4:+58073855 MsG0480021456.01.T01:CDS
GCATCTAATTCAGGATCAGG+AGG 0.640976 4:+58075200 MsG0480021456.01.T01:CDS
TGGAGCTTGGAAAGTGCGAG+TGG 0.641087 4:-58073805 None:intergenic
TGTTGTAGAGGAGTCTCCCA+TGG 0.642923 4:-58075264 None:intergenic
GCGCCACTACAACAATACTC+GGG 0.652627 4:-58074176 None:intergenic
TCAAACATGGTAGAATGCAA+CGG 0.654931 4:+58073915 MsG0480021456.01.T01:CDS
AGAAGATGGACAAAAGGTAA+CGG 0.655103 4:-58074327 None:intergenic
AACTCAGCTAGGGTTGCTGG+TGG 0.659719 4:-58073951 None:intergenic
CAACACCAATACCAGGAGCA+GGG 0.663691 4:+58075066 MsG0480021456.01.T01:CDS
AGTACTCGAAGCATCATCGT+AGG 0.663812 4:-58074279 None:intergenic
CTTCGACAGTTAACTGCCGA+GGG 0.666992 4:+58072562 MsG0480021456.01.T01:CDS
TCATGTCTTACCGGAGACTG+TGG 0.669388 4:+58073891 MsG0480021456.01.T01:CDS
TGATTGTTGAAGGCTCTGGT+GGG 0.669561 4:+58074039 MsG0480021456.01.T01:CDS
TGAAAATGGAGTTCAATACA+CGG 0.669710 4:+58075124 MsG0480021456.01.T01:CDS
AAAGTGCGAGTGGTTTCTTG+TGG 0.674516 4:-58073795 None:intergenic
GTGGGTGGTTTACAATAAGG+AGG 0.682001 4:-58075482 None:intergenic
GAAAATGGAGTTCAATACAC+GGG 0.685341 4:+58075125 MsG0480021456.01.T01:CDS
ACTTCGGCAGTTGACTACCA+AGG 0.702640 4:+58072502 MsG0480021456.01.T01:CDS
TCTGAACCAGCAATGTCCAG+CGG 0.703644 4:+58074097 MsG0480021456.01.T01:CDS
GACAGTGATAGGGACTCCTG+AGG 0.705413 4:+58075088 MsG0480021456.01.T01:CDS
CAGATCGGAAGTACACCCGG+TGG 0.809112 4:-58074078 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAGTAATTTTTTACATT+TGG + Chr4:58072747-58072766 MsG0480021456.01.T01:intron 10.0%
!!! TAAAGTAATTTTTTACATTT+GGG + Chr4:58072748-58072767 MsG0480021456.01.T01:intron 10.0%
!! TTGTTAAATGAAATGTAAAT+GGG + Chr4:58075390-58075409 MsG0480021456.01.T01:three_prime_UTR 15.0%
!! TTTGTTAAATGAAATGTAAA+TGG + Chr4:58075389-58075408 MsG0480021456.01.T01:three_prime_UTR 15.0%
!!! TTACTTTTTTTTTTGTCTTA+GGG - Chr4:58073277-58073296 None:intergenic 15.0%
!!! TTGATTAATTTTATTTACCT+TGG - Chr4:58074353-58074372 None:intergenic 15.0%
!! AAATAATGAACATAGAACAA+AGG - Chr4:58073605-58073624 None:intergenic 20.0%
!! ATTAATAGTAGATTTATCGT+TGG + Chr4:58074750-58074769 MsG0480021456.01.T01:intron 20.0%
!!! AATTTTGTGATTGTAGAAAT+TGG + Chr4:58074972-58074991 MsG0480021456.01.T01:intron 20.0%
!!! ATGTTAAAAGTATGTAAACT+AGG + Chr4:58074390-58074409 MsG0480021456.01.T01:intron 20.0%
!!! GTTACTTTTTTTTTTGTCTT+AGG - Chr4:58073278-58073297 None:intergenic 20.0%
!!! TACTTTTTTTTTTGTCTTAG+GGG - Chr4:58073276-58073295 None:intergenic 20.0%
!!! TGTTAAAAGTATGTAAACTA+GGG + Chr4:58074391-58074410 MsG0480021456.01.T01:intron 20.0%
!!! TTTTTTACATGTTTTTGTTC+AGG + Chr4:58073663-58073682 MsG0480021456.01.T01:intron 20.0%
! AAACTACCATCGATATTTAA+AGG - Chr4:58072682-58072701 None:intergenic 25.0%
! ACATTTGTTTACAAATGTGA+AGG - Chr4:58073703-58073722 None:intergenic 25.0%
! CTGAACTAAACATAATTTGA+CGG - Chr4:58072882-58072901 None:intergenic 25.0%
! GTCAGAAATTATTCTTCAAA+AGG - Chr4:58074510-58074529 None:intergenic 25.0%
! TAACAACATTGTCGTATAAT+GGG - Chr4:58074418-58074437 None:intergenic 25.0%
! TGAACTAAACATAATTTGAC+GGG - Chr4:58072881-58072900 None:intergenic 25.0%
! TTAACAACATTGTCGTATAA+TGG - Chr4:58074419-58074438 None:intergenic 25.0%
! TTGTTCTTGTAACAAAACTT+CGG + Chr4:58072486-58072505 MsG0480021456.01.T01:CDS 25.0%
! TTTCGTCTAACAAAAGTTAA+AGG - Chr4:58072646-58072665 None:intergenic 25.0%
!! CAAGAAAAAGTTAGTGTTTT+TGG - Chr4:58073640-58073659 None:intergenic 25.0%
!! TAAATGGGTACTTAGATTTT+CGG + Chr4:58075405-58075424 MsG0480021456.01.T01:three_prime_UTR 25.0%
!! TTTTGTTACAAGAACAAAAC+TGG - Chr4:58072483-58072502 None:intergenic 25.0%
!!! ACTTTTTTTTTTGTCTTAGG+TGG - Chr4:58073275-58073294 None:intergenic 25.0%
!!! TTTTTTCCGATTTCAAAACA+CGG - Chr4:58072820-58072839 None:intergenic 25.0%
!!! TTTTTTGGGTTTATGGATTT+TGG + Chr4:58075429-58075448 MsG0480021456.01.T01:three_prime_UTR 25.0%
AACTAGTCATCTTAAGCAAA+CGG + Chr4:58074809-58074828 MsG0480021456.01.T01:intron 30.0%
AATAATGATTGTGTGTGGAA+TGG - Chr4:58073396-58073415 None:intergenic 30.0%
AATGAAATGAGAGAACTATG+GGG - Chr4:58073039-58073058 None:intergenic 30.0%
AATTTCCACTTCAGATTTGT+AGG + Chr4:58074660-58074679 MsG0480021456.01.T01:intron 30.0%
ACAATGAAATGAGAGAACTA+TGG - Chr4:58073041-58073060 None:intergenic 30.0%
ATCTTAAGCAAACGGTTAAA+TGG + Chr4:58074817-58074836 MsG0480021456.01.T01:intron 30.0%
ATGTGAATAATGATTGTGTG+TGG - Chr4:58073401-58073420 None:intergenic 30.0%
ATTAAAACTATGTTCCCCTT+TGG - Chr4:58074717-58074736 None:intergenic 30.0%
ATTTCCACTTCAGATTTGTA+GGG + Chr4:58074661-58074680 MsG0480021456.01.T01:intron 30.0%
CAATGAAATGAGAGAACTAT+GGG - Chr4:58073040-58073059 None:intergenic 30.0%
GATTGTAACAACTTGTGATA+TGG + Chr4:58074997-58075016 MsG0480021456.01.T01:intron 30.0%
GTTGATCCTTTAAATATCGA+TGG + Chr4:58072673-58072692 MsG0480021456.01.T01:intron 30.0%
TAAGAGAGTGATATAAGTTG+AGG - Chr4:58073546-58073565 None:intergenic 30.0%
TAATTTACCCAAATATCCCT+CGG - Chr4:58072581-58072600 None:intergenic 30.0%
TAGTAGTTTACATACACACA+TGG + Chr4:58073511-58073530 MsG0480021456.01.T01:intron 30.0%
TGAAAATGGAGTTCAATACA+CGG + Chr4:58075124-58075143 MsG0480021456.01.T01:CDS 30.0%
TTTATTTACCTTGGAGAAGA+TGG - Chr4:58074344-58074363 None:intergenic 30.0%
! AAAAGCATGTAATGTCATCA+TGG + Chr4:58074607-58074626 MsG0480021456.01.T01:intron 30.0%
! AAATGGGTACTTAGATTTTC+GGG + Chr4:58075406-58075425 MsG0480021456.01.T01:three_prime_UTR 30.0%
! CAAATTATGTTTAGTTCAGG+CGG + Chr4:58072883-58072902 MsG0480021456.01.T01:intron 30.0%
! CGTCAAATTATGTTTAGTTC+AGG + Chr4:58072880-58072899 MsG0480021456.01.T01:intron 30.0%
! TCTGCATTTGTTTACTCTTT+TGG + Chr4:58075293-58075312 MsG0480021456.01.T01:CDS 30.0%
! TTTTTCCGATTTCAAAACAC+GGG - Chr4:58072819-58072838 None:intergenic 30.0%
!! AAAGGTTGTGTTTTTACCTT+TGG - Chr4:58073587-58073606 None:intergenic 30.0%
!! AAGGTTGTGTTTTTACCTTT+GGG - Chr4:58073586-58073605 None:intergenic 30.0%
!! TCGTTGGCATTTAATTTGTT+AGG + Chr4:58074766-58074785 MsG0480021456.01.T01:intron 30.0%
!!! AAAGGGGAACATAGTTTTAA+TGG + Chr4:58074716-58074735 MsG0480021456.01.T01:intron 30.0%
!!! ACTTAGATTTTCGGGTTTTT+TGG + Chr4:58075414-58075433 MsG0480021456.01.T01:three_prime_UTR 30.0%
!!! CTTAGATTTTCGGGTTTTTT+GGG + Chr4:58075415-58075434 MsG0480021456.01.T01:three_prime_UTR 30.0%
!!! GTTAGTGTTTTTGGTTTTGA+AGG - Chr4:58073631-58073650 None:intergenic 30.0%
!!! TGAGTTTTGTTGTTATGTCT+AGG + Chr4:58072919-58072938 MsG0480021456.01.T01:intron 30.0%
!!! TGTTTTTTCCATGTAACCAT+AGG + Chr4:58074688-58074707 MsG0480021456.01.T01:intron 30.0%
AAAAACCAAGCAACCTAACT+AGG + Chr4:58073449-58073468 MsG0480021456.01.T01:intron 35.0%
AACAACAAAACTCATATCCG+TGG - Chr4:58072913-58072932 None:intergenic 35.0%
AACATTTCCGAGTAAATCGA+CGG - Chr4:58074227-58074246 None:intergenic 35.0%
AATCTACCCATGATTGTTGA+AGG + Chr4:58074029-58074048 MsG0480021456.01.T01:CDS 35.0%
AGAAGATGGACAAAAGGTAA+CGG - Chr4:58074330-58074349 None:intergenic 35.0%
AGTTAACTGTCGAAGTTTAC+AGG - Chr4:58072557-58072576 None:intergenic 35.0%
ATAAAATCCCACTTGCTCAA+AGG + Chr4:58074910-58074929 MsG0480021456.01.T01:intron 35.0%
ATGATGATTGTGTTGTGGAA+TGG - Chr4:58073187-58073206 None:intergenic 35.0%
ATTCAGTTCCCGTAAATTCA+GGG + Chr4:58075168-58075187 MsG0480021456.01.T01:CDS 35.0%
ATTTATTAATCTGTCGACCC+AGG + Chr4:58072996-58073015 MsG0480021456.01.T01:intron 35.0%
GAAAATGGAGTTCAATACAC+GGG + Chr4:58075125-58075144 MsG0480021456.01.T01:CDS 35.0%
TAAAATCCCACTTGCTCAAA+GGG + Chr4:58074911-58074930 MsG0480021456.01.T01:intron 35.0%
TACAAGAACAAAACTGGCAT+AGG - Chr4:58072477-58072496 None:intergenic 35.0%
TATTCAGTTCCCGTAAATTC+AGG + Chr4:58075167-58075186 MsG0480021456.01.T01:CDS 35.0%
TCAAACATGGTAGAATGCAA+CGG + Chr4:58073915-58073934 MsG0480021456.01.T01:CDS 35.0%
TGGATCATATTTAGCTGGAT+TGG + Chr4:58075241-58075260 MsG0480021456.01.T01:CDS 35.0%
TGTTATTGACACATCGCATA+AGG - Chr4:58072618-58072637 None:intergenic 35.0%
TTTATTAATCTGTCGACCCA+GGG + Chr4:58072997-58073016 MsG0480021456.01.T01:intron 35.0%
TTTCCACTTCAGATTTGTAG+GGG + Chr4:58074662-58074681 MsG0480021456.01.T01:intron 35.0%
! TACTTTTACTTGTACTGCTG+CGG + Chr4:58074298-58074317 MsG0480021456.01.T01:CDS 35.0%
! TTTACATTTGGGACGAGTTT+GGG + Chr4:58072759-58072778 MsG0480021456.01.T01:intron 35.0%
!! AGGTTGTGTTTTTACCTTTG+GGG - Chr4:58073585-58073604 None:intergenic 35.0%
!! TGTTGGGATTTGATAATGAG+TGG - Chr4:58073115-58073134 None:intergenic 35.0%
!! TGTTTTTGTTCAGGTATCAC+TGG + Chr4:58073672-58073691 MsG0480021456.01.T01:intron 35.0%
!! TTTTACATTTGGGACGAGTT+TGG + Chr4:58072758-58072777 MsG0480021456.01.T01:intron 35.0%
!!! GACAAAAGAGAGTGTTTTGA+GGG - Chr4:58073077-58073096 None:intergenic 35.0%
!!! TGCTTGGTTTTTTTGAGTGT+TGG - Chr4:58073441-58073460 None:intergenic 35.0%
!!! TTTCGGGTTTTTTGGGTTTA+TGG + Chr4:58075422-58075441 MsG0480021456.01.T01:three_prime_UTR 35.0%
AAGGTGGGTGGTTTACAATA+AGG - Chr4:58075488-58075507 None:intergenic 40.0%
AATGATTGTGTGTGGAATGG+TGG - Chr4:58073393-58073412 None:intergenic 40.0%
ACAAATGTGCCTACACAGTA+TGG + Chr4:58073715-58073734 MsG0480021456.01.T01:CDS 40.0%
ACAATACCCTTTGAGCAAGT+GGG - Chr4:58074920-58074939 None:intergenic 40.0%
ATATGATCCATCTGCAAGCA+TGG - Chr4:58075231-58075250 None:intergenic 40.0%
ATGATTGTGTTGTGGAATGG+TGG - Chr4:58073184-58073203 None:intergenic 40.0%
ATGTAACCATAGGTAGCCAA+AGG + Chr4:58074698-58074717 MsG0480021456.01.T01:intron 40.0%
ATGTGTGTGTTTCGTGCATT+GGG + Chr4:58072961-58072980 MsG0480021456.01.T01:intron 40.0%
CAAAACCAAGCACCTTAACT+AGG + Chr4:58073242-58073261 MsG0480021456.01.T01:intron 40.0%
CGATTTCAAAACACGGGTAA+CGG - Chr4:58072813-58072832 None:intergenic 40.0%
GATTTCAAAACACGGGTAAC+GGG - Chr4:58072812-58072831 None:intergenic 40.0%
GCAGATGGATCATATTTAGC+TGG + Chr4:58075236-58075255 MsG0480021456.01.T01:CDS 40.0%
GTGCTATGATGATTGTGTTG+TGG - Chr4:58073192-58073211 None:intergenic 40.0%
GTTGGAACAGGATCTGAAAA+TGG + Chr4:58075110-58075129 MsG0480021456.01.T01:CDS 40.0%
TACAATACCCTTTGAGCAAG+TGG - Chr4:58074921-58074940 None:intergenic 40.0%
TATGTGTGTGTTTCGTGCAT+TGG + Chr4:58072960-58072979 MsG0480021456.01.T01:intron 40.0%
TCAGCATCTAATTCAGGATC+AGG + Chr4:58075197-58075216 MsG0480021456.01.T01:CDS 40.0%
TCCTGAATTAGATGCTGATC+CGG - Chr4:58075195-58075214 None:intergenic 40.0%
TGAGTGGAGTTAGCAAGAAA+AGG - Chr4:58073099-58073118 None:intergenic 40.0%
TGCAGATGAAGTTGTTGTAG+AGG - Chr4:58075279-58075298 None:intergenic 40.0%
TGTAACCATAGGTAGCCAAA+GGG + Chr4:58074699-58074718 MsG0480021456.01.T01:intron 40.0%
TTAACTGCCGAGGGATATTT+GGG + Chr4:58072571-58072590 MsG0480021456.01.T01:CDS 40.0%
TTCCACTTCAGATTTGTAGG+GGG + Chr4:58074663-58074682 MsG0480021456.01.T01:intron 40.0%
TTGAATGTTGCTAGTGAGTG+AGG - Chr4:58073157-58073176 None:intergenic 40.0%
TTTGGCTACCTATGGTTACA+TGG - Chr4:58074699-58074718 None:intergenic 40.0%
! AGTAACCTAGTTAAGGTGCT+TGG - Chr4:58073250-58073269 None:intergenic 40.0%
! AGTAACCTAGTTAGGTTGCT+TGG - Chr4:58073457-58073476 None:intergenic 40.0%
! GCACTGTTTTCGTGGTATTT+TGG + Chr4:58075366-58075385 MsG0480021456.01.T01:three_prime_UTR 40.0%
!! AGTTTAGGAAGGAGTGTTGT+TGG - Chr4:58073343-58073362 None:intergenic 40.0%
!! ATATTTAGCTGGATTGGCCA+TGG + Chr4:58075247-58075266 MsG0480021456.01.T01:CDS 40.0%
!! GGTTGTGTTTTTACCTTTGG+GGG - Chr4:58073584-58073603 None:intergenic 40.0%
!! GTTTAGGAAGGAGTGTTGTT+GGG - Chr4:58073342-58073361 None:intergenic 40.0%
!! TATTTAGCTGGATTGGCCAT+GGG + Chr4:58075248-58075267 MsG0480021456.01.T01:CDS 40.0%
!! TTGTAGACCGTCGATTTACT+CGG + Chr4:58074217-58074236 MsG0480021456.01.T01:CDS 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - Chr4:58072849-58072868 None:intergenic 40.0%
!!! ATTTTGACTGGGTTTGGGTA+TGG - Chr4:58072850-58072869 None:intergenic 40.0%
!!! CGTTACCCGTGTTTTGAAAT+CGG + Chr4:58072811-58072830 MsG0480021456.01.T01:intron 40.0%
!!! GGACAAAAGAGAGTGTTTTG+AGG - Chr4:58073078-58073097 None:intergenic 40.0%
AAAGTGCGAGTGGTTTCTTG+TGG - Chr4:58073798-58073817 None:intergenic 45.0%
AACCCCCTACAAATCTGAAG+TGG - Chr4:58074668-58074687 None:intergenic 45.0%
AATACCTGGCCATACTGTGT+AGG - Chr4:58073727-58073746 None:intergenic 45.0%
ACCAGAGCCTTCAACAATCA+TGG - Chr4:58074039-58074058 None:intergenic 45.0%
ACCCAAACCCAGTCAAAATG+CGG + Chr4:58072851-58072870 MsG0480021456.01.T01:intron 45.0%
ACGGGAACTGAATACCCAAT+GGG - Chr4:58075161-58075180 None:intergenic 45.0%
AGGCGTAGCTATACGATCTA+GGG - Chr4:58074262-58074281 None:intergenic 45.0%
AGTGAGTGAGGAGTTTAGGA+AGG - Chr4:58073145-58073164 None:intergenic 45.0%
ATGACCTCAACACCAATACC+AGG + Chr4:58075059-58075078 MsG0480021456.01.T01:CDS 45.0%
ATTGTGTTGTGGAATGGTGG+TGG - Chr4:58073181-58073200 None:intergenic 45.0%
CCAGAGCCTTCAACAATCAT+GGG - Chr4:58074038-58074057 None:intergenic 45.0%
CCAGGTATTCTAGCAAATGC+AGG + Chr4:58073738-58073757 MsG0480021456.01.T01:CDS 45.0%
CCTTGGAGAAGATGGACAAA+AGG - Chr4:58074336-58074355 None:intergenic 45.0%
CTAGGCGAAAAAGAAACGCA+AGG + Chr4:58072937-58072956 MsG0480021456.01.T01:intron 45.0%
CTGTCGAAGTTTACAGGATC+CGG - Chr4:58072551-58072570 None:intergenic 45.0%
GAGTTCACTCTTGGCACTAT+AGG + Chr4:58073969-58073988 MsG0480021456.01.T01:CDS 45.0%
GCATCTAATTCAGGATCAGG+AGG + Chr4:58075200-58075219 MsG0480021456.01.T01:CDS 45.0%
GGGGTGTAGTAACCTAGTTA+AGG - Chr4:58073257-58073276 None:intergenic 45.0%
GGTGGTGTAGTAACCTAGTT+AGG - Chr4:58073465-58073484 None:intergenic 45.0%
GTAACCATAGGTAGCCAAAG+GGG + Chr4:58074700-58074719 MsG0480021456.01.T01:intron 45.0%
GTGAGTGAGGAGTTTAGGAA+GGG - Chr4:58073144-58073163 None:intergenic 45.0%
GTGGGTGGTTTACAATAAGG+AGG - Chr4:58075485-58075504 None:intergenic 45.0%
GTTAACTGCCGAGGGATATT+TGG + Chr4:58072570-58072589 MsG0480021456.01.T01:CDS 45.0%
GTTGAGGTCATTGGAGTTGT+TGG - Chr4:58075050-58075069 None:intergenic 45.0%
TACGGGAACTGAATACCCAA+TGG - Chr4:58075162-58075181 None:intergenic 45.0%
TAGGCGTAGCTATACGATCT+AGG - Chr4:58074263-58074282 None:intergenic 45.0%
TATTGTTGTAGTGGCGCGTA+TGG + Chr4:58074182-58074201 MsG0480021456.01.T01:CDS 45.0%
TCCGGATCAGCATCTAATTC+AGG + Chr4:58075191-58075210 MsG0480021456.01.T01:CDS 45.0%
TGAGAGAACTATGGGGCTAT+TGG - Chr4:58073032-58073051 None:intergenic 45.0%
TGAGTGAGGAGTTTAGGAAG+GGG - Chr4:58073143-58073162 None:intergenic 45.0%
TGATCCGGACCCTGAATTTA+CGG - Chr4:58075180-58075199 None:intergenic 45.0%
TGCTAGTGAGTGAGGAGTTT+AGG - Chr4:58073149-58073168 None:intergenic 45.0%
TTAGTTCAGGCGGATAACCA+CGG + Chr4:58072893-58072912 MsG0480021456.01.T01:intron 45.0%
TTCTTGTGGAAGCTCGAAAC+CGG - Chr4:58073784-58073803 None:intergenic 45.0%
TTGACTACCAAGGAAAGCCT+CGG + Chr4:58072512-58072531 MsG0480021456.01.T01:CDS 45.0%
! AGACTGTAGCACTGTTTTCG+TGG + Chr4:58075358-58075377 MsG0480021456.01.T01:three_prime_UTR 45.0%
! AGTACTCGAAGCATCATCGT+AGG - Chr4:58074282-58074301 None:intergenic 45.0%
! AGTCCCGAGTATTGTTGTAG+TGG + Chr4:58074173-58074192 MsG0480021456.01.T01:CDS 45.0%
! ATGATTGTTGAAGGCTCTGG+TGG + Chr4:58074038-58074057 MsG0480021456.01.T01:CDS 45.0%
! ATTTGGGACGAGTTTGGGTA+CGG + Chr4:58072764-58072783 MsG0480021456.01.T01:intron 45.0%
! CCTGCATTTGCTAGAATACC+TGG - Chr4:58073741-58073760 None:intergenic 45.0%
! CCTTTTGTCCATCTTCTCCA+AGG + Chr4:58074333-58074352 MsG0480021456.01.T01:CDS 45.0%
! TGATTGTTGAAGGCTCTGGT+GGG + Chr4:58074039-58074058 MsG0480021456.01.T01:CDS 45.0%
!! AACACGGGTAACGGGTATAT+AGG - Chr4:58072804-58072823 None:intergenic 45.0%
!! GGTATTGGTGTTGAGGTCAT+TGG - Chr4:58075059-58075078 None:intergenic 45.0%
!! TGGACATTGCTGGTTCAGAT+CGG - Chr4:58074096-58074115 None:intergenic 45.0%
!! TGTTTTTACCTTTGGGGGTG+AGG - Chr4:58073579-58073598 None:intergenic 45.0%
!! TTAGGAAGGGGAGTGTTGTT+GGG - Chr4:58073131-58073150 None:intergenic 45.0%
!! TTTAGGAAGGGGAGTGTTGT+TGG - Chr4:58073132-58073151 None:intergenic 45.0%
!!! AAGGTGCTTGGTTTTGAGTG+TGG - Chr4:58073238-58073257 None:intergenic 45.0%
!!! AGGTGCTTGGTTTTGAGTGT+GGG - Chr4:58073237-58073256 None:intergenic 45.0%
!!! GGGTTTTCCGCATTTTGACT+GGG - Chr4:58072861-58072880 None:intergenic 45.0%
!!! GTTTTGAGGGTAAAAGCTGC+TGG - Chr4:58073064-58073083 None:intergenic 45.0%
!!! TCCGCATTTTGACTGGGTTT+GGG - Chr4:58072855-58072874 None:intergenic 45.0%
!!! TTCCGCATTTTGACTGGGTT+TGG - Chr4:58072856-58072875 None:intergenic 45.0%
AATGCAGGTAGCCCAACACT+CGG + Chr4:58073753-58073772 MsG0480021456.01.T01:CDS 50.0%
ACCCTAGCTGAGTTCACTCT+TGG + Chr4:58073960-58073979 MsG0480021456.01.T01:CDS 50.0%
ACTTCGACAGTTAACTGCCG+AGG + Chr4:58072561-58072580 MsG0480021456.01.T01:CDS 50.0%
ACTTCGGCAGTTGACTACCA+AGG + Chr4:58072502-58072521 MsG0480021456.01.T01:CDS 50.0%
ATCGACGGTCTACAAGTAGC+CGG - Chr4:58074212-58074231 None:intergenic 50.0%
ATGGTAGAATGCAACGGTGC+CGG + Chr4:58073921-58073940 MsG0480021456.01.T01:CDS 50.0%
CAACACCAATACCAGGAGCA+GGG + Chr4:58075066-58075085 MsG0480021456.01.T01:CDS 50.0%
CATGTTTGAGCCACAGTCTC+CGG - Chr4:58073904-58073923 None:intergenic 50.0%
CCCATGATTGTTGAAGGCTC+TGG + Chr4:58074035-58074054 MsG0480021456.01.T01:CDS 50.0%
CGCGCCACTACAACAATACT+CGG - Chr4:58074180-58074199 None:intergenic 50.0%
CTTCGACAGTTAACTGCCGA+GGG + Chr4:58072562-58072581 MsG0480021456.01.T01:CDS 50.0%
CTTCTTATCCTCACCCCCAA+AGG + Chr4:58073568-58073587 MsG0480021456.01.T01:intron 50.0%
GATCCGGACCCTGAATTTAC+GGG - Chr4:58075179-58075198 None:intergenic 50.0%
GATTGTGTGTGGAATGGTGG+TGG - Chr4:58073390-58073409 None:intergenic 50.0%
GCCAAGAGTGAACTCAGCTA+GGG - Chr4:58073964-58073983 None:intergenic 50.0%
GCGCCACTACAACAATACTC+GGG - Chr4:58074179-58074198 None:intergenic 50.0%
GCGGAGTTAAGAGCTTCAGA+TGG + Chr4:58074116-58074135 MsG0480021456.01.T01:CDS 50.0%
GGAGAAACCATGCTTGCAGA+TGG + Chr4:58075221-58075240 MsG0480021456.01.T01:CDS 50.0%
GTCTCCGGTAAGACATGAAC+CGG - Chr4:58073889-58073908 None:intergenic 50.0%
GTTCCCGTAAATTCAGGGTC+CGG + Chr4:58075173-58075192 MsG0480021456.01.T01:CDS 50.0%
TAATCTGTCGACCCAGGGTA+CGG + Chr4:58073002-58073021 MsG0480021456.01.T01:intron 50.0%
TACGACGTGAGTCTCGTTGA+TGG + Chr4:58074002-58074021 MsG0480021456.01.T01:CDS 50.0%
TCAACACCAATACCAGGAGC+AGG + Chr4:58075065-58075084 MsG0480021456.01.T01:CDS 50.0%
TCAGATCCTGTTCCAACCTC+AGG - Chr4:58075107-58075126 None:intergenic 50.0%
TCATGTCTTACCGGAGACTG+TGG + Chr4:58073891-58073910 MsG0480021456.01.T01:CDS 50.0%
TCTGAACCAGCAATGTCCAG+CGG + Chr4:58074097-58074116 MsG0480021456.01.T01:CDS 50.0%
TGCCAAGAGTGAACTCAGCT+AGG - Chr4:58073965-58073984 None:intergenic 50.0%
TGTTCCCCTTTGGCTACCTA+TGG - Chr4:58074707-58074726 None:intergenic 50.0%
TGTTGTAGAGGAGTCTCCCA+TGG - Chr4:58075267-58075286 None:intergenic 50.0%
TTAACTCCGCTGGACATTGC+TGG - Chr4:58074106-58074125 None:intergenic 50.0%
TTAACTGCCGAGGCTTTCCT+TGG - Chr4:58072522-58072541 None:intergenic 50.0%
! GTTCAGATCGGAAGTACACC+CGG - Chr4:58074084-58074103 None:intergenic 50.0%
! TCTGAAGCTCTTAACTCCGC+TGG - Chr4:58074116-58074135 None:intergenic 50.0%
! TTTGGGACGAGTTTGGGTAC+GGG + Chr4:58072765-58072784 MsG0480021456.01.T01:intron 50.0%
!! CGGGTTTTCCGCATTTTGAC+TGG - Chr4:58072862-58072881 None:intergenic 50.0%
!! GGCTTGTTGCTCACTAAAGC+TGG + Chr4:58075450-58075469 MsG0480021456.01.T01:three_prime_UTR 50.0%
!! TGCTCCTGGTATTGGTGTTG+AGG - Chr4:58075066-58075085 None:intergenic 50.0%
!!! GCTTGGTTTTGAGTGTGGGA+TGG - Chr4:58073233-58073252 None:intergenic 50.0%
AAACCGGTGCTTCCGAGTGT+TGG - Chr4:58073768-58073787 None:intergenic 55.0%
AACCGGTGCTTCCGAGTGTT+GGG - Chr4:58073767-58073786 None:intergenic 55.0%
AACTCAGCTAGGGTTGCTGG+TGG - Chr4:58073954-58073973 None:intergenic 55.0%
AATCTGTCGACCCAGGGTAC+GGG + Chr4:58073003-58073022 MsG0480021456.01.T01:intron 55.0%
ACGAGTTTGGGTACGGGTTC+GGG + Chr4:58072771-58072790 MsG0480021456.01.T01:intron 55.0%
ACGGGTACAGACACACCCAT+TGG + Chr4:58075143-58075162 MsG0480021456.01.T01:CDS 55.0%
ACTGTCCCTGCTCCTGGTAT+TGG - Chr4:58075074-58075093 None:intergenic 55.0%
CAGGAGCAGGGACAGTGATA+GGG + Chr4:58075078-58075097 MsG0480021456.01.T01:CDS 55.0%
CGAACCGGTTGCAACTTCGA+CGG + Chr4:58073855-58073874 MsG0480021456.01.T01:CDS 55.0%
CGGAGACTGTGGCTCAAACA+TGG + Chr4:58073902-58073921 MsG0480021456.01.T01:CDS 55.0%
CGGGTACAGACACACCCATT+GGG + Chr4:58075144-58075163 MsG0480021456.01.T01:CDS 55.0%
CTATTGGATGCCCGTACCCT+GGG - Chr4:58073016-58073035 None:intergenic 55.0%
GACAGTGATAGGGACTCCTG+AGG + Chr4:58075088-58075107 MsG0480021456.01.T01:CDS 55.0%
GACGAGTTTGGGTACGGGTT+CGG + Chr4:58072770-58072789 MsG0480021456.01.T01:intron 55.0%
GGATCCGTCGAAGTTGCAAC+CGG - Chr4:58073862-58073881 None:intergenic 55.0%
GGCTCCGGTTCATGTCTTAC+CGG + Chr4:58073882-58073901 MsG0480021456.01.T01:CDS 55.0%
GGTAAGACATGAACCGGAGC+CGG - Chr4:58073883-58073902 None:intergenic 55.0%
GGTTGCAACTTCGACGGATC+CGG + Chr4:58073861-58073880 MsG0480021456.01.T01:CDS 55.0%
GTGAACTCAGCTAGGGTTGC+TGG - Chr4:58073957-58073976 None:intergenic 55.0%
GTGATAGGGACTCCTGAGGT+TGG + Chr4:58075092-58075111 MsG0480021456.01.T01:CDS 55.0%
TAGTGGCGCGTATGGTTCAC+CGG + Chr4:58074190-58074209 MsG0480021456.01.T01:CDS 55.0%
TCGGGTATGTGTGAGTCCAC+CGG + Chr4:58074062-58074081 MsG0480021456.01.T01:CDS 55.0%
TGTGCCTACACAGTATGGCC+AGG + Chr4:58073720-58073739 MsG0480021456.01.T01:CDS 55.0%
! TGGAGCTTGGAAAGTGCGAG+TGG - Chr4:58073808-58073827 None:intergenic 55.0%
! TGTTGAAGGCTCTGGTGGGT+CGG + Chr4:58074043-58074062 MsG0480021456.01.T01:CDS 55.0%
!! AAGAGCGCGTGTGAGGCTTT+TGG + Chr4:58074149-58074168 MsG0480021456.01.T01:CDS 55.0%
AACTTCGACGGATCCGGCTC+CGG + Chr4:58073867-58073886 MsG0480021456.01.T01:CDS 60.0%
CCAGGAGCAGGGACAGTGAT+AGG + Chr4:58075077-58075096 MsG0480021456.01.T01:CDS 60.0%
CCTATCACTGTCCCTGCTCC+TGG - Chr4:58075080-58075099 None:intergenic 60.0%
CCTCGGCAGTTAACTGCAGC+CGG + Chr4:58072529-58072548 MsG0480021456.01.T01:CDS 60.0%
CGAGTTTGGGTACGGGTTCG+GGG + Chr4:58072772-58072791 MsG0480021456.01.T01:intron 60.0%
CGCACTTTCCAAGCTCCAGC+CGG + Chr4:58073810-58073829 MsG0480021456.01.T01:CDS 60.0%
CGGGTATGTGTGAGTCCACC+GGG + Chr4:58074063-58074082 MsG0480021456.01.T01:CDS 60.0%
CTTTCCAAGCTCCAGCCGGT+TGG + Chr4:58073814-58073833 MsG0480021456.01.T01:CDS 60.0%
GCTATTGGATGCCCGTACCC+TGG - Chr4:58073017-58073036 None:intergenic 60.0%
GGGACTCCTGAGGTTGGAAC+AGG + Chr4:58075098-58075117 MsG0480021456.01.T01:CDS 60.0%
TTTGGGTACGGGTTCGGGGT+GGG + Chr4:58072776-58072795 MsG0480021456.01.T01:intron 60.0%
! AGCCCAACACTCGGAAGCAC+CGG + Chr4:58073762-58073781 MsG0480021456.01.T01:CDS 60.0%
! CAGATCGGAAGTACACCCGG+TGG - Chr4:58074081-58074100 None:intergenic 60.0%
! GTTGAAGGCTCTGGTGGGTC+GGG + Chr4:58074044-58074063 MsG0480021456.01.T01:CDS 60.0%
!! AACCGGTTCGAGCCCAGAAC+CGG - Chr4:58073845-58073864 None:intergenic 60.0%
CCGGCTGCAGTTAACTGCCG+AGG - Chr4:58072532-58072551 None:intergenic 65.0%
GTTTGGGTACGGGTTCGGGG+TGG + Chr4:58072775-58072794 MsG0480021456.01.T01:intron 65.0%
! CAAGCTCCAGCCGGTTGGTC+CGG + Chr4:58073819-58073838 MsG0480021456.01.T01:CDS 65.0%
! CGCGTGTAAGAGCGCGTGTG+AGG + Chr4:58074142-58074161 MsG0480021456.01.T01:CDS 65.0%
! GGTTGCTGGTGGTGCAGCTC+CGG - Chr4:58073943-58073962 None:intergenic 65.0%
CCAGAACCGGCCGGACCAAC+CGG - Chr4:58073832-58073851 None:intergenic 70.0%
CGGACCAACCGGCTGGAGCT+TGG - Chr4:58073821-58073840 None:intergenic 70.0%
GGTTCGAGCCCAGAACCGGC+CGG - Chr4:58073841-58073860 None:intergenic 70.0%
! CGGTTGGTCCGGCCGGTTCT+GGG + Chr4:58073830-58073849 MsG0480021456.01.T01:CDS 70.0%
!! GGCCGGTTCTGGGCTCGAAC+CGG + Chr4:58073840-58073859 MsG0480021456.01.T01:CDS 70.0%
AACCGGCCGGACCAACCGGC+TGG - Chr4:58073828-58073847 None:intergenic 75.0%
! CCGGTTGGTCCGGCCGGTTC+TGG + Chr4:58073829-58073848 MsG0480021456.01.T01:CDS 75.0%
! CTCCAGCCGGTTGGTCCGGC+CGG + Chr4:58073823-58073842 MsG0480021456.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 58072457 58075518 58072457 ID=MsG0480021456.01;Name=MsG0480021456.01
Chr4 mRNA 58072457 58075518 58072457 ID=MsG0480021456.01.T01;Parent=MsG0480021456.01;Name=MsG0480021456.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.33|0.66|0.5|0.66|3|169|375
Chr4 exon 58072457 58072592 58072457 ID=MsG0480021456.01.T01:exon:19452;Parent=MsG0480021456.01.T01
Chr4 exon 58073685 58074354 58073685 ID=MsG0480021456.01.T01:exon:19453;Parent=MsG0480021456.01.T01
Chr4 exon 58075028 58075518 58075028 ID=MsG0480021456.01.T01:exon:19454;Parent=MsG0480021456.01.T01
Chr4 CDS 58072457 58072592 58072457 ID=MsG0480021456.01.T01:cds;Parent=MsG0480021456.01.T01
Chr4 CDS 58073685 58074354 58073685 ID=MsG0480021456.01.T01:cds;Parent=MsG0480021456.01.T01
Chr4 CDS 58075028 58075349 58075028 ID=MsG0480021456.01.T01:cds;Parent=MsG0480021456.01.T01
Chr4 three_prime_UTR 58075350 58075518 58075350 ID=MsG0480021456.01.T01:three_prime_utr;Parent=MsG0480021456.01.T01
Gene Sequence

>MsG0480021456.01.T01

ATGGAGTTTTGGAAACTCCTATGCCAGTTTTGTTCTTGTAACAAAACTTCGGCAGTTGACTACCAAGGAAAGCCTCGGCAGTTAACTGCAGCCGGATCCTGTAAACTTCGACAGTTAACTGCCGAGGGATATTTGGGTATCACTGGTTCAACCTTCACATTTGTAAACAAATGTGCCTACACAGTATGGCCAGGTATTCTAGCAAATGCAGGTAGCCCAACACTCGGAAGCACCGGTTTCGAGCTTCCACAAGAAACCACTCGCACTTTCCAAGCTCCAGCCGGTTGGTCCGGCCGGTTCTGGGCTCGAACCGGTTGCAACTTCGACGGATCCGGCTCCGGTTCATGTCTTACCGGAGACTGTGGCTCAAACATGGTAGAATGCAACGGTGCCGGAGCTGCACCACCAGCAACCCTAGCTGAGTTCACTCTTGGCACTATAGGACAAGATTTCTACGACGTGAGTCTCGTTGATGGCTACAATCTACCCATGATTGTTGAAGGCTCTGGTGGGTCGGGTATGTGTGAGTCCACCGGGTGTACTTCCGATCTGAACCAGCAATGTCCAGCGGAGTTAAGAGCTTCAGATGGAAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGTAGTCCCGAGTATTGTTGTAGTGGCGCGTATGGTTCACCGGCTACTTGTAGACCGTCGATTTACTCGGAAATGTTTAAAGCTGCTTGCCCTAGATCGTATAGCTACGCCTACGATGATGCTTCGAGTACTTTTACTTGTACTGCTGCGGATTATACCGTTACCTTTTGTCCATCTTCTCCAAGTAAAAAATCATCACAATATCCAACAACTCCAATGACCTCAACACCAATACCAGGAGCAGGGACAGTGATAGGGACTCCTGAGGTTGGAACAGGATCTGAAAATGGAGTTCAATACACGGGTACAGACACACCCATTGGGTATTCAGTTCCCGTAAATTCAGGGTCCGGATCAGCATCTAATTCAGGATCAGGAGGAGAAACCATGCTTGCAGATGGATCATATTTAGCTGGATTGGCCATGGGAGACTCCTCTACAACAACTTCATCTGCATTTGTTTACTCTTTTGGTTTTTTTCTTATTTTCTTCTTGCTTAGTTTTTAG

Protein sequence

>MsG0480021456.01.T01

MEFWKLLCQFCSCNKTSAVDYQGKPRQLTAAGSCKLRQLTAEGYLGITGSTFTFVNKCAYTVWPGILANAGSPTLGSTGFELPQETTRTFQAPAGWSGRFWARTGCNFDGSGSGSCLTGDCGSNMVECNGAGAAPPATLAEFTLGTIGQDFYDVSLVDGYNLPMIVEGSGGSGMCESTGCTSDLNQQCPAELRASDGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDASSTFTCTAADYTVTFCPSSPSKKSSQYPTTPMTSTPIPGAGTVIGTPEVGTGSENGVQYTGTDTPIGYSVPVNSGSGSASNSGSGGETMLADGSYLAGLAMGDSSTTTSSAFVYSFGFFLIFFLLSF*