AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046529.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046529.01.T01 MTR_4g109490 100.000 56 0 0 132 187 163 218 8.94e-25 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 87 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGTCTTTATTATGTTT+TGG 0.239738 8:+74440567 MsG0880046529.01.T01:CDS
GTAGCAAAAGCCATGTTGTT+AGG 0.285089 8:-74437019 None:intergenic
GGCAGTGGTATGGGGCCTTC+TGG 0.300371 8:+74440470 MsG0880046529.01.T01:CDS
GCCATGTTGTTAGGGTTAGA+AGG 0.304097 8:-74437010 None:intergenic
TTCCATGCCGGTGCCTGTTC+CGG 0.346454 8:-74440302 None:intergenic
GGTATGGGGCCTTCTGGAGC+TGG 0.348837 8:+74440476 MsG0880046529.01.T01:CDS
TGACATATGTAGGTGCTAAT+TGG 0.376958 8:+74437265 MsG0880046529.01.T01:intron
CTGGTGCCTGTGCCTGTTGA+CGG 0.378904 8:-74440330 None:intergenic
ACAGCTCCTGGTGGTGTGTT+AGG 0.379943 8:+74440440 MsG0880046529.01.T01:CDS
TGGTGCCTGTGCCTGTTGAC+GGG 0.385734 8:-74440329 None:intergenic
TCTATTTGTTCTTGATGAGC+AGG 0.386893 8:+74437594 MsG0880046529.01.T01:CDS
ACCAGCACGGGCACTGGCAC+AGG 0.387634 8:+74440348 MsG0880046529.01.T01:CDS
TAGAGAGTGAGCAGAGGAGA+AGG 0.389219 8:-74436846 None:intergenic
TTGGACTATGCTTGTGGAGC+TGG 0.394023 8:+74437330 MsG0880046529.01.T01:CDS
TTCCCATGCGGTGCCCGTGC+TGG 0.400782 8:-74440373 None:intergenic
ATTACCAGTGGCGCCGGTGC+TGG 0.406626 8:-74440402 None:intergenic
CACGGGCACCGCATGGGAAC+TGG 0.409619 8:+74440377 MsG0880046529.01.T01:CDS
TCTTGATGAGCAGGTGTTAG+TGG 0.412133 8:+74437603 MsG0880046529.01.T01:CDS
TACCGAACAGGTACCGGAAC+AGG 0.412489 8:+74440289 MsG0880046529.01.T01:CDS
GGAGGTATAGGCAGTGGTAT+GGG 0.420850 8:+74440461 MsG0880046529.01.T01:CDS
CATGGAACCACCCCGTCAAC+AGG 0.422368 8:+74440318 MsG0880046529.01.T01:CDS
AATTTAAACCTGGCACTTGA+AGG 0.429774 8:-74437636 None:intergenic
GGTGGTGTGTTAGGAGGTAT+AGG 0.430692 8:+74440449 MsG0880046529.01.T01:CDS
GCCTGTGCCAGTGCCCGTGC+TGG 0.440067 8:-74440349 None:intergenic
GTGAGCAGAGGAGAAGGGAT+TGG 0.444026 8:-74436840 None:intergenic
ACAGGCACCAGCACGGGCAC+TGG 0.447382 8:+74440342 MsG0880046529.01.T01:CDS
CCAGGAGCTGTTGTACTGTA+TGG 0.447426 8:-74440428 None:intergenic
ACCTGTTCGGTACCTGTCGA+TGG 0.449554 8:-74440278 None:intergenic
GTGCCTACCCTTCAAGTGCC+AGG 0.455839 8:+74437628 MsG0880046529.01.T01:CDS
ACTGGCACAGGCACCAGCAC+GGG 0.457127 8:+74440360 MsG0880046529.01.T01:CDS
TAGCAAAAGCCATGTTGTTA+GGG 0.462759 8:-74437018 None:intergenic
AGAGTGAGGTGTGAGAATAA+AGG 0.463499 8:-74436888 None:intergenic
TGCCTGTTCCGGTACCTGTT+CGG 0.466208 8:-74440291 None:intergenic
GACAGGTACCGAACAGGTAC+CGG 0.472467 8:+74440283 MsG0880046529.01.T01:CDS
GGCACCAGCACCGGCGCCAC+TGG 0.476458 8:+74440398 MsG0880046529.01.T01:CDS
AGGAGGTATAGGCAGTGGTA+TGG 0.479837 8:+74440460 MsG0880046529.01.T01:CDS
ACAGGCACAGGCACCAGCAC+GGG 0.482143 8:+74440336 MsG0880046529.01.T01:CDS
AACAGGCACAGGCACCAGCA+CGG 0.493126 8:+74440335 MsG0880046529.01.T01:CDS
ATGGGAACTGGCACCAGCAC+CGG 0.493451 8:+74440389 MsG0880046529.01.T01:CDS
CCCATCGACAGGTACCGAAC+AGG 0.496830 8:+74440277 MsG0880046529.01.T01:CDS
TTAGTAGTATATTATGATGA+TGG 0.497362 8:+74440613 MsG0880046529.01.T01:three_prime_UTR
CACCAGCACGGGCACCGCAT+GGG 0.503406 8:+74440371 MsG0880046529.01.T01:CDS
CACTGGCACAGGCACCAGCA+CGG 0.506011 8:+74440359 MsG0880046529.01.T01:CDS
CCATGTTGTTAGGGTTAGAA+GGG 0.506014 8:-74437009 None:intergenic
AGAGAGTGAGCAGAGGAGAA+GGG 0.510201 8:-74436845 None:intergenic
AGAAGGGAAAGATGAGGTAA+TGG 0.512144 8:-74436993 None:intergenic
GCACCAGCACGGGCACCGCA+TGG 0.516176 8:+74440370 MsG0880046529.01.T01:CDS
ACCACCCCGTCAACAGGCAC+AGG 0.518201 8:+74440324 MsG0880046529.01.T01:CDS
ATGGGGCCTTCTGGAGCTGG+AGG 0.525618 8:+74440479 MsG0880046529.01.T01:CDS
ATCATCATAATATACTACTA+AGG 0.527017 8:-74440611 None:intergenic
TGCTAATTGGTGCGTGTGCA+AGG 0.528841 8:+74437278 MsG0880046529.01.T01:CDS
CCATACAGTACAACAGCTCC+TGG 0.531703 8:+74440428 MsG0880046529.01.T01:CDS
CCCTTCTAACCCTAACAACA+TGG 0.535980 8:+74437009 MsG0880046529.01.T01:exon
AGAGTAGTTACTTGAAGGAA+TGG 0.538541 8:-74437076 None:intergenic
ACAGGTACCGGAACAGGCAC+CGG 0.541635 8:+74440295 MsG0880046529.01.T01:CDS
CCTGTTCGGTACCTGTCGAT+GGG 0.544348 8:-74440277 None:intergenic
AATTGGTGCGTGTGCAAGGA+TGG 0.547293 8:+74437282 MsG0880046529.01.T01:CDS
ATTTAAACCTGGCACTTGAA+GGG 0.550247 8:-74437635 None:intergenic
ACTTGAAGGAATGGCGGTGA+AGG 0.551245 8:-74437067 None:intergenic
TTGACGGGGTGGTTCCATGC+CGG 0.553655 8:-74440314 None:intergenic
AGCACAACAAGCCCATCGAC+AGG 0.566305 8:+74440266 MsG0880046529.01.T01:CDS
GTGTTAGGAGGTATAGGCAG+TGG 0.567121 8:+74440455 MsG0880046529.01.T01:CDS
GAGGTATAGGCAGTGGTATG+GGG 0.567753 8:+74440462 MsG0880046529.01.T01:CDS
TACCGGAACAGGCACCGGCA+TGG 0.568541 8:+74440300 MsG0880046529.01.T01:CDS
TGCAATCTTACAAAAGACCT+TGG 0.568888 8:+74437311 MsG0880046529.01.T01:CDS
TCATGGTGGTCTTAGACTTG+TGG 0.577210 8:+74440517 MsG0880046529.01.T01:CDS
AAACCTGGCACTTGAAGGGT+AGG 0.578796 8:-74437631 None:intergenic
GCCTGTGCCTGTTGACGGGG+TGG 0.580302 8:-74440325 None:intergenic
GGTGCCTGTGCCTGTTGACG+GGG 0.584558 8:-74440328 None:intergenic
GCTCCTGGTGGTGTGTTAGG+AGG 0.584893 8:+74440443 MsG0880046529.01.T01:CDS
TGGAGTATTACCAGTGGCGC+CGG 0.591264 8:-74440408 None:intergenic
AAGACCTTGGACTATGCTTG+TGG 0.615068 8:+74437324 MsG0880046529.01.T01:CDS
TTCATTCCTCCAGCTCCAGA+AGG 0.618676 8:-74440485 None:intergenic
TAATAAAGACAGAAAAGAGA+GGG 0.621796 8:-74440559 None:intergenic
AGCTCCACAAGCATAGTCCA+AGG 0.629352 8:-74437328 None:intergenic
AGGGTTAGAAGGGAAAGATG+AGG 0.646486 8:-74436999 None:intergenic
ATAATAAAGACAGAAAAGAG+AGG 0.649627 8:-74440560 None:intergenic
ATAGATTAGAGAGTGAGCAG+AGG 0.657056 8:-74436852 None:intergenic
ATACCTCCTAACACACCACC+AGG 0.661726 8:-74440446 None:intergenic
ATTGAGTTGAAAGAGAAGAG+TGG 0.662370 8:-74436923 None:intergenic
GGAATGAATGATGATAGTCA+TGG 0.689619 8:+74440500 MsG0880046529.01.T01:CDS
GTAGTTACTTGAAGGAATGG+CGG 0.700102 8:-74437073 None:intergenic
TGCTGGTGCCAGTTCCCATG+CGG 0.705003 8:-74440385 None:intergenic
TACAGTACAACAGCTCCTGG+TGG 0.711572 8:+74440431 MsG0880046529.01.T01:CDS
GGTGCGTGACAGAAAGAGTG+AGG 0.729752 8:-74436902 None:intergenic
ACTGTATGGAGTATTACCAG+TGG 0.731514 8:-74440414 None:intergenic
ATGAATGATGATAGTCATGG+TGG 0.761282 8:+74440503 MsG0880046529.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATGTAAAATAAATT+TGG - Chr8:74438265-74438284 None:intergenic 10.0%
!! AAGTAAATTTAATGATTCAT+TGG + Chr8:74438552-74438571 MsG0880046529.01.T01:intron 15.0%
!! TATACATCAAAAGAATTAAT+GGG + Chr8:74438237-74438256 MsG0880046529.01.T01:intron 15.0%
!!! TACTTTTGTTTATCATAATA+GGG + Chr8:74437773-74437792 MsG0880046529.01.T01:intron 15.0%
!!! TATACTTTTAACTACTTTTA+AGG - Chr8:74439909-74439928 None:intergenic 15.0%
!!! TTACTTTTGTTTATCATAAT+AGG + Chr8:74437772-74437791 MsG0880046529.01.T01:intron 15.0%
!!! TTTAAAATTTGTTGATGATA+AGG + Chr8:74439302-74439321 MsG0880046529.01.T01:intron 15.0%
!!! TTTTAAAGATATCTTTTTCA+TGG + Chr8:74438084-74438103 MsG0880046529.01.T01:intron 15.0%
!! AAAATAATGAAATGAATGCA+CGG - Chr8:74439470-74439489 None:intergenic 20.0%
!! AAATTCTTATTCCAGAAAAA+AGG - Chr8:74439021-74439040 None:intergenic 20.0%
!! AGAAAATAATAAAGTTCACT+TGG - Chr8:74438949-74438968 None:intergenic 20.0%
!! ATAAAGAAAAAGATCATTCT+TGG - Chr8:74439059-74439078 None:intergenic 20.0%
!! ATACATCAAAAGAATTAATG+GGG + Chr8:74438238-74438257 MsG0880046529.01.T01:intron 20.0%
!! ATCATCATAATATACTACTA+AGG - Chr8:74440614-74440633 None:intergenic 20.0%
!! ATCCTGAATAAAAGTTTAAT+TGG + Chr8:74439631-74439650 MsG0880046529.01.T01:intron 20.0%
!! GTATACATCAAAAGAATTAA+TGG + Chr8:74438236-74438255 MsG0880046529.01.T01:intron 20.0%
!! GTTAGCTACAATTATTTAAA+AGG - Chr8:74437553-74437572 None:intergenic 20.0%
!! TAGAGAAAAAAATTTAAACC+TGG - Chr8:74437649-74437668 None:intergenic 20.0%
!! TAGCATGAAATCTAAAAATT+AGG + Chr8:74439853-74439872 MsG0880046529.01.T01:intron 20.0%
!! TCCTGAATAAAAGTTTAATT+GGG + Chr8:74439632-74439651 MsG0880046529.01.T01:intron 20.0%
!! TTAAATGTGTAATTATGAGT+TGG - Chr8:74440171-74440190 None:intergenic 20.0%
!! TTAGATATATTCACACAAAA+AGG + Chr8:74437822-74437841 MsG0880046529.01.T01:intron 20.0%
!! TTAGTAGTATATTATGATGA+TGG + Chr8:74440613-74440632 MsG0880046529.01.T01:three_prime_UTR 20.0%
!! TTTATCTTTATAACAAAAGC+CGG - Chr8:74438410-74438429 None:intergenic 20.0%
!!! ATAAAAGTTTAATTGGGTTT+TGG + Chr8:74439638-74439657 MsG0880046529.01.T01:intron 20.0%
!!! ATTTTTTAAGACATTCGAAA+TGG + Chr8:74438028-74438047 MsG0880046529.01.T01:intron 20.0%
!!! CTATTTTGTTTTTGTTAATG+AGG - Chr8:74439569-74439588 None:intergenic 20.0%
!!! TATTTTACATAATGATGATG+CGG + Chr8:74438269-74438288 MsG0880046529.01.T01:intron 20.0%
!!! TTTCTGTCTTTATTATGTTT+TGG + Chr8:74440567-74440586 MsG0880046529.01.T01:CDS 20.0%
!!! TTTTTCATTTACATACATAG+AGG - Chr8:74438359-74438378 None:intergenic 20.0%
!!! TTTTTGTATAGTAGTAGTTT+AGG - Chr8:74438587-74438606 None:intergenic 20.0%
! AAATTATAGAAAGTGATGTG+TGG - Chr8:74439432-74439451 None:intergenic 25.0%
! AAGGAAAAACAAGAAAGAAA+AGG - Chr8:74437534-74437553 None:intergenic 25.0%
! AGACGCACAATAATAATTTA+AGG - Chr8:74440206-74440225 None:intergenic 25.0%
! AGTAATGTCACAAAAAAACA+TGG + Chr8:74437195-74437214 MsG0880046529.01.T01:intron 25.0%
! ATAATAAAGACAGAAAAGAG+AGG - Chr8:74440563-74440582 None:intergenic 25.0%
! CTATACAAAAAGAACTTGAA+AGG + Chr8:74438596-74438615 MsG0880046529.01.T01:intron 25.0%
! GCATTTGAAAAATGAAAAGA+AGG - Chr8:74437117-74437136 None:intergenic 25.0%
! TAATAAAGACAGAAAAGAGA+GGG - Chr8:74440562-74440581 None:intergenic 25.0%
! TACATCAAAAGAATTAATGG+GGG + Chr8:74438239-74438258 MsG0880046529.01.T01:intron 25.0%
! TATGTAAATGAAAAAAAGCC+AGG + Chr8:74438364-74438383 MsG0880046529.01.T01:intron 25.0%
! TCATATAAAATTGCAACTGA+GGG + Chr8:74440112-74440131 MsG0880046529.01.T01:intron 25.0%
! TTCATATAAAATTGCAACTG+AGG + Chr8:74440111-74440130 MsG0880046529.01.T01:intron 25.0%
! TTTATTCCTAGAAGAATGAA+AGG + Chr8:74439074-74439093 MsG0880046529.01.T01:intron 25.0%
!! AACTCTAAAAACCTTATCAT+AGG + Chr8:74439950-74439969 MsG0880046529.01.T01:intron 25.0%
!! ACCCAATTAAACTTTTATTC+AGG - Chr8:74439636-74439655 None:intergenic 25.0%
!! AGGAATTGTTTAAAACATGA+CGG + Chr8:74440012-74440031 MsG0880046529.01.T01:intron 25.0%
!! ATTCAAACTTTAGAAAGCAT+CGG - Chr8:74438841-74438860 None:intergenic 25.0%
!! ATTCTTTTGATGTATACGTA+CGG - Chr8:74438233-74438252 None:intergenic 25.0%
!! TTGTAGCTAACTCTTTTTAT+TGG + Chr8:74437562-74437581 MsG0880046529.01.T01:intron 25.0%
!!! TAAAGATATCTTTTTCATGG+TGG + Chr8:74438087-74438106 MsG0880046529.01.T01:intron 25.0%
!!! TCTTTTCATTTTTCAAATGC+TGG + Chr8:74437117-74437136 MsG0880046529.01.T01:intron 25.0%
!!! TGTCTTTATTATGTTTTGGT+GGG + Chr8:74440571-74440590 MsG0880046529.01.T01:CDS 25.0%
!!! TGTGTTTTTGAAGAATCTTA+TGG + Chr8:74437729-74437748 MsG0880046529.01.T01:intron 25.0%
!!! TTATTTTGCTTTGATATGTG+TGG + Chr8:74438667-74438686 MsG0880046529.01.T01:intron 25.0%
AACAATAAGATTTGCCCATT+AGG - Chr8:74439784-74439803 None:intergenic 30.0%
AAGAATCTTATGGACAATAG+TGG + Chr8:74437739-74437758 MsG0880046529.01.T01:intron 30.0%
AATAGCTATTACCAGAAGAA+GGG + Chr8:74437432-74437451 MsG0880046529.01.T01:intron 30.0%
ACAATACATACACGTTGAAT+TGG - Chr8:74438694-74438713 None:intergenic 30.0%
ACATATTTGCACACAAGATA+GGG - Chr8:74438443-74438462 None:intergenic 30.0%
AGTATATGAAATGTGTAGAC+TGG + Chr8:74439923-74439942 MsG0880046529.01.T01:intron 30.0%
ATAGACAATAGTAGTGATAG+TGG + Chr8:74437914-74437933 MsG0880046529.01.T01:intron 30.0%
GCAAAATAATGCCTATGATA+AGG - Chr8:74439964-74439983 None:intergenic 30.0%
GGTGAAAATGAGTATTTACT+TGG - Chr8:74437513-74437532 None:intergenic 30.0%
TAATCAATTATGTGACCTAC+CGG + Chr8:74438388-74438407 MsG0880046529.01.T01:intron 30.0%
TACATATTTGCACACAAGAT+AGG - Chr8:74438444-74438463 None:intergenic 30.0%
TCATTTACATACATAGAGGA+GGG - Chr8:74438355-74438374 None:intergenic 30.0%
TCTCAAACTTTGACATATGT+AGG + Chr8:74437255-74437274 MsG0880046529.01.T01:intron 30.0%
TTAGATAGCAATGAAAAACG+TGG - Chr8:74436965-74436984 None:intergenic 30.0%
TTCATTTACATACATAGAGG+AGG - Chr8:74438356-74438375 None:intergenic 30.0%
TTGTTGATGTGTATGTTCTT+TGG + Chr8:74439799-74439818 MsG0880046529.01.T01:intron 30.0%
! ACACAAAAAGGTTTTTCCTT+GGG + Chr8:74437834-74437853 MsG0880046529.01.T01:intron 30.0%
! ACTCCTATTACTCCTATTTT+GGG + Chr8:74439536-74439555 MsG0880046529.01.T01:intron 30.0%
! ATGTGTATGTTCTTTGGTTT+GGG + Chr8:74439805-74439824 MsG0880046529.01.T01:intron 30.0%
! ATTGACTTTACGAAAGTTGA+TGG - Chr8:74439374-74439393 None:intergenic 30.0%
! GAACCACTGATTAGTAAAAA+AGG - Chr8:74440239-74440258 None:intergenic 30.0%
! TACTCCTATTACTCCTATTT+TGG + Chr8:74439535-74439554 MsG0880046529.01.T01:intron 30.0%
! TTAGGTGACATGTTTTATGA+TGG + Chr8:74439871-74439890 MsG0880046529.01.T01:intron 30.0%
! TTTTTACTAATCAGTGGTTC+AGG + Chr8:74440239-74440258 MsG0880046529.01.T01:intron 30.0%
!! CTGTCTTTATTATGTTTTGG+TGG + Chr8:74440570-74440589 MsG0880046529.01.T01:CDS 30.0%
!! GGCATTATTTTGCGAAATTT+AGG + Chr8:74439971-74439990 MsG0880046529.01.T01:intron 30.0%
!! GTAATTATGAGTTGGTTTGT+CGG - Chr8:74440163-74440182 None:intergenic 30.0%
!! TTGTTTTGCATAGAGGTTAT+GGG + Chr8:74437971-74437990 MsG0880046529.01.T01:intron 30.0%
!!! GTCTTTATTATGTTTTGGTG+GGG + Chr8:74440572-74440591 MsG0880046529.01.T01:CDS 30.0%
!!! GTTCCTTTTTTACTAATCAG+TGG + Chr8:74440233-74440252 MsG0880046529.01.T01:intron 30.0%
!!! GTTTAATTGGGTTTTGGTTT+TGG + Chr8:74439644-74439663 MsG0880046529.01.T01:intron 30.0%
AATTTAAACCTGGCACTTGA+AGG - Chr8:74437639-74437658 None:intergenic 35.0%
ACTGTCCATCTAAACCTAAT+GGG + Chr8:74439767-74439786 MsG0880046529.01.T01:intron 35.0%
AGAGTAGTTACTTGAAGGAA+TGG - Chr8:74437079-74437098 None:intergenic 35.0%
AGTCCCAAAATAGGAGTAAT+AGG - Chr8:74439542-74439561 None:intergenic 35.0%
ATGAATGATGATAGTCATGG+TGG + Chr8:74440503-74440522 MsG0880046529.01.T01:CDS 35.0%
ATTCCACCTTTCATTCTTCT+AGG - Chr8:74439083-74439102 None:intergenic 35.0%
ATTCCTAGAAGAATGAAAGG+TGG + Chr8:74439077-74439096 MsG0880046529.01.T01:intron 35.0%
ATTTAAACCTGGCACTTGAA+GGG - Chr8:74437638-74437657 None:intergenic 35.0%
ATTTGCCCATTAGGTTTAGA+TGG - Chr8:74439775-74439794 None:intergenic 35.0%
GAAAAGAAGGAAGATCTGAA+TGG - Chr8:74437104-74437123 None:intergenic 35.0%
GAATAGCTATTACCAGAAGA+AGG + Chr8:74437431-74437450 MsG0880046529.01.T01:intron 35.0%
GATGTGTATGTTCTTTGGTT+TGG + Chr8:74439804-74439823 MsG0880046529.01.T01:intron 35.0%
GCTTACATGACATACAGTAA+AGG - Chr8:74439684-74439703 None:intergenic 35.0%
GGAATGAATGATGATAGTCA+TGG + Chr8:74440500-74440519 MsG0880046529.01.T01:CDS 35.0%
GGCTATAATCACCAATGAAT+GGG - Chr8:74438765-74438784 None:intergenic 35.0%
GGTCACATAATTGATTATCC+TGG - Chr8:74438385-74438404 None:intergenic 35.0%
GTACCACTACTACTAAAACA+AGG + Chr8:74438894-74438913 MsG0880046529.01.T01:intron 35.0%
TAATGAAATGAATGCACGGT+TGG - Chr8:74439466-74439485 None:intergenic 35.0%
TAGCAAAAGCCATGTTGTTA+GGG - Chr8:74437021-74437040 None:intergenic 35.0%
TAGTCTCATCAAAACTACCT+TGG + Chr8:74439586-74439605 MsG0880046529.01.T01:intron 35.0%
TCTAAAAAAAGCCTGATGGA+GGG + Chr8:74439227-74439246 MsG0880046529.01.T01:intron 35.0%
TCTATTTGTTCTTGATGAGC+AGG + Chr8:74437594-74437613 MsG0880046529.01.T01:CDS 35.0%
TCTTTATAACAAAAGCCGGT+AGG - Chr8:74438406-74438425 None:intergenic 35.0%
TGACATATGTAGGTGCTAAT+TGG + Chr8:74437265-74437284 MsG0880046529.01.T01:intron 35.0%
TGCAATCTTACAAAAGACCT+TGG + Chr8:74437311-74437330 MsG0880046529.01.T01:CDS 35.0%
TGGTTAGAGTAGTTACTTGA+AGG - Chr8:74437084-74437103 None:intergenic 35.0%
! AAAAGGTTTTTCCTTGGGTT+AGG + Chr8:74437839-74437858 MsG0880046529.01.T01:intron 35.0%
! CACACAAAAAGGTTTTTCCT+TGG + Chr8:74437833-74437852 MsG0880046529.01.T01:intron 35.0%
! TGTAGTCTTTTTCTTCCCTA+CGG + Chr8:74438328-74438347 MsG0880046529.01.T01:intron 35.0%
! TTCTAAAAAAAGCCTGATGG+AGG + Chr8:74439226-74439245 MsG0880046529.01.T01:intron 35.0%
!! ATTGAGTTGAAAGAGAAGAG+TGG - Chr8:74436926-74436945 None:intergenic 35.0%
!! GTGTTCTAAAAAAAGCCTGA+TGG + Chr8:74439223-74439242 MsG0880046529.01.T01:intron 35.0%
!! GTTGTTTTGCATAGAGGTTA+TGG + Chr8:74437970-74437989 MsG0880046529.01.T01:intron 35.0%
!!! ATCTTGCTTTGCCTTTTTTC+TGG + Chr8:74439007-74439026 MsG0880046529.01.T01:intron 35.0%
!!! GACATTGTTGTTTTGCATAG+AGG + Chr8:74437964-74437983 MsG0880046529.01.T01:intron 35.0%
!!! GGTGACACGTTTTGAAAAAT+AGG + Chr8:74439992-74440011 MsG0880046529.01.T01:intron 35.0%
!!! TGGTTTTGGTTTGTGTGAAT+AGG + Chr8:74439658-74439677 MsG0880046529.01.T01:intron 35.0%
AACTCAGAATTACCCATGAC+CGG - Chr8:74439284-74439303 None:intergenic 40.0%
AAGAAATCAAGAACCAGCCA+AGG - Chr8:74439606-74439625 None:intergenic 40.0%
AGAAGGGAAAGATGAGGTAA+TGG - Chr8:74436996-74437015 None:intergenic 40.0%
AGAGTGAGGTGTGAGAATAA+AGG - Chr8:74436891-74436910 None:intergenic 40.0%
AGTAGTAGTTTAGGTCAGAC+AGG - Chr8:74438578-74438597 None:intergenic 40.0%
ATAGATTAGAGAGTGAGCAG+AGG - Chr8:74436855-74436874 None:intergenic 40.0%
ATCTCTTTGTCTGTTTGGCA+TGG + Chr8:74438144-74438163 MsG0880046529.01.T01:intron 40.0%
ATTGGAAACGTCATCACGAT+AGG - Chr8:74438736-74438755 None:intergenic 40.0%
CACTGTCCATCTAAACCTAA+TGG + Chr8:74439766-74439785 MsG0880046529.01.T01:intron 40.0%
CCAATGAATGGGCACTAAAT+TGG - Chr8:74438754-74438773 None:intergenic 40.0%
CCAATTTAGTGCCCATTCAT+TGG + Chr8:74438751-74438770 MsG0880046529.01.T01:intron 40.0%
CCATGTTGTTAGGGTTAGAA+GGG - Chr8:74437012-74437031 None:intergenic 40.0%
CGGCTATAATCACCAATGAA+TGG - Chr8:74438766-74438785 None:intergenic 40.0%
GTAGCAAAAGCCATGTTGTT+AGG - Chr8:74437022-74437041 None:intergenic 40.0%
GTAGTTACTTGAAGGAATGG+CGG - Chr8:74437076-74437095 None:intergenic 40.0%
GTGTCATCTCTTTGTCTGTT+TGG + Chr8:74438139-74438158 MsG0880046529.01.T01:intron 40.0%
TGAGGCTTAAGTCCCAAAAT+AGG - Chr8:74439551-74439570 None:intergenic 40.0%
! AATGAGCTCTAACGGTGTTT+GGG - Chr8:74437398-74437417 None:intergenic 40.0%
! ACTGTATGGAGTATTACCAG+TGG - Chr8:74440417-74440436 None:intergenic 40.0%
! ATAGCTGCAATGAGCTCTAA+CGG - Chr8:74437406-74437425 None:intergenic 40.0%
! CTGAGTAGAGAGTATGTACT+AGG + Chr8:74439726-74439745 MsG0880046529.01.T01:intron 40.0%
! TTTTGCATAGAGGTTATGGG+AGG + Chr8:74437974-74437993 MsG0880046529.01.T01:intron 40.0%
!!! GAGCCTTGTTTTAGTAGTAG+TGG - Chr8:74438900-74438919 None:intergenic 40.0%
AAGACCTTGGACTATGCTTG+TGG + Chr8:74437324-74437343 MsG0880046529.01.T01:CDS 45.0%
AATATACCGTCACCGGTCAT+GGG + Chr8:74439269-74439288 MsG0880046529.01.T01:intron 45.0%
AGAACACAGACTCACTGCAA+CGG - Chr8:74438786-74438805 None:intergenic 45.0%
AGGGTTAGAAGGGAAAGATG+AGG - Chr8:74437002-74437021 None:intergenic 45.0%
CATACTCTCTACTCAGCTGA+AGG - Chr8:74439722-74439741 None:intergenic 45.0%
CCCTTCTAACCCTAACAACA+TGG + Chr8:74437009-74437028 MsG0880046529.01.T01:exon 45.0%
CTCATCAAAACTACCTTGGC+TGG + Chr8:74439590-74439609 MsG0880046529.01.T01:intron 45.0%
GAGTCAAGTGTCTGTTGATC+AGG - Chr8:74439341-74439360 None:intergenic 45.0%
GCCATGTTGTTAGGGTTAGA+AGG - Chr8:74437013-74437032 None:intergenic 45.0%
GTGATGTGTGGTAGCACAAT+TGG - Chr8:74439420-74439439 None:intergenic 45.0%
TCTTGATGAGCAGGTGTTAG+TGG + Chr8:74437603-74437622 MsG0880046529.01.T01:CDS 45.0%
TTGGTCATGCACGAACATCA+AGG - Chr8:74439401-74439420 None:intergenic 45.0%
! CAATGAGCTCTAACGGTGTT+TGG - Chr8:74437399-74437418 None:intergenic 45.0%
! CAGACACTTGACTCGATATC+TGG + Chr8:74439347-74439366 MsG0880046529.01.T01:intron 45.0%
! TCATGGTGGTCTTAGACTTG+TGG + Chr8:74440517-74440536 MsG0880046529.01.T01:CDS 45.0%
!! ACGGTGTTTGGGTTGTAACA+AGG - Chr8:74437387-74437406 None:intergenic 45.0%
!! AGGTTTTTCCTTGGGTTAGG+TGG + Chr8:74437842-74437861 MsG0880046529.01.T01:intron 45.0%
!! GGTTTTTCCTTGGGTTAGGT+GGG + Chr8:74437843-74437862 MsG0880046529.01.T01:intron 45.0%
!!! AAGGAGCGTTTTGACGAAGA+GGG - Chr8:74437368-74437387 None:intergenic 45.0%
!! TAAAAAAAAATATAATGAAT+TGG - Chr8:74438489-74438508 None:intergenic 5.0%
!!! GAATTTTTTTTTTTTTTTTT+GGG + Chr8:74438295-74438314 MsG0880046529.01.T01:intron 5.0%
!!! TGAATTTTTTTTTTTTTTTT+TGG + Chr8:74438294-74438313 MsG0880046529.01.T01:intron 5.0%
AAACCTGGCACTTGAAGGGT+AGG - Chr8:74437634-74437653 None:intergenic 50.0%
AATTGGTGCGTGTGCAAGGA+TGG + Chr8:74437282-74437301 MsG0880046529.01.T01:CDS 50.0%
ACTCCAATACTCCCTCCATC+AGG - Chr8:74439241-74439260 None:intergenic 50.0%
ACTTGAAGGAATGGCGGTGA+AGG - Chr8:74437070-74437089 None:intergenic 50.0%
AGAGAGTGAGCAGAGGAGAA+GGG - Chr8:74436848-74436867 None:intergenic 50.0%
AGCTCCACAAGCATAGTCCA+AGG - Chr8:74437331-74437350 None:intergenic 50.0%
ATACATAGAGGAGGGACCGT+AGG - Chr8:74438347-74438366 None:intergenic 50.0%
ATACCTCCTAACACACCACC+AGG - Chr8:74440449-74440468 None:intergenic 50.0%
CAATATACCGTCACCGGTCA+TGG + Chr8:74439268-74439287 MsG0880046529.01.T01:intron 50.0%
CCAGGAGCTGTTGTACTGTA+TGG - Chr8:74440431-74440450 None:intergenic 50.0%
CCATACAGTACAACAGCTCC+TGG + Chr8:74440428-74440447 MsG0880046529.01.T01:CDS 50.0%
GAAGAAGGGTCAACAAGCAC+TGG + Chr8:74437446-74437465 MsG0880046529.01.T01:intron 50.0%
GAATTACCCATGACCGGTGA+CGG - Chr8:74439278-74439297 None:intergenic 50.0%
GAGGTATAGGCAGTGGTATG+GGG + Chr8:74440462-74440481 MsG0880046529.01.T01:CDS 50.0%
GGTGGGACATGCTTTGCAAT+AGG + Chr8:74437860-74437879 MsG0880046529.01.T01:intron 50.0%
TACAGTACAACAGCTCCTGG+TGG + Chr8:74440431-74440450 MsG0880046529.01.T01:CDS 50.0%
TACATAGAGGAGGGACCGTA+GGG - Chr8:74438346-74438365 None:intergenic 50.0%
TAGAGAGTGAGCAGAGGAGA+AGG - Chr8:74436849-74436868 None:intergenic 50.0%
TGCTAATTGGTGCGTGTGCA+AGG + Chr8:74437278-74437297 MsG0880046529.01.T01:CDS 50.0%
TTCATTCCTCCAGCTCCAGA+AGG - Chr8:74440488-74440507 None:intergenic 50.0%
TTGGACTATGCTTGTGGAGC+TGG + Chr8:74437330-74437349 MsG0880046529.01.T01:CDS 50.0%
! AAGCCTGATGGAGGGAGTAT+TGG + Chr8:74439235-74439254 MsG0880046529.01.T01:intron 50.0%
! AGGAGGTATAGGCAGTGGTA+TGG + Chr8:74440460-74440479 MsG0880046529.01.T01:CDS 50.0%
! CATGACCGGTGACGGTATAT+TGG - Chr8:74439270-74439289 None:intergenic 50.0%
! GGAGGTATAGGCAGTGGTAT+GGG + Chr8:74440461-74440480 MsG0880046529.01.T01:CDS 50.0%
! GGTGGTGTGTTAGGAGGTAT+AGG + Chr8:74440449-74440468 MsG0880046529.01.T01:CDS 50.0%
! GTGCTTGTTGACCCTTCTTC+TGG - Chr8:74437446-74437465 None:intergenic 50.0%
! GTGTTAGGAGGTATAGGCAG+TGG + Chr8:74440455-74440474 MsG0880046529.01.T01:CDS 50.0%
!! GGAGGGAGTATTGGAGTACT+GGG + Chr8:74439244-74439263 MsG0880046529.01.T01:intron 50.0%
!! TGGAGGGAGTATTGGAGTAC+TGG + Chr8:74439243-74439262 MsG0880046529.01.T01:intron 50.0%
!!! CAAGGAGCGTTTTGACGAAG+AGG - Chr8:74437369-74437388 None:intergenic 50.0%
ACCTGTTCGGTACCTGTCGA+TGG - Chr8:74440281-74440300 None:intergenic 55.0%
AGCACAACAAGCCCATCGAC+AGG + Chr8:74440266-74440285 MsG0880046529.01.T01:CDS 55.0%
AGCATGTCCCACCTAACCCA+AGG - Chr8:74437853-74437872 None:intergenic 55.0%
CCTGTTCGGTACCTGTCGAT+GGG - Chr8:74440280-74440299 None:intergenic 55.0%
CTGGGCCAATATACCGTCAC+CGG + Chr8:74439262-74439281 MsG0880046529.01.T01:intron 55.0%
GGTGCGTGACAGAAAGAGTG+AGG - Chr8:74436905-74436924 None:intergenic 55.0%
GTGAGCAGAGGAGAAGGGAT+TGG - Chr8:74436843-74436862 None:intergenic 55.0%
TGCCTGTTCCGGTACCTGTT+CGG - Chr8:74440294-74440313 None:intergenic 55.0%
! ACAGCTCCTGGTGGTGTGTT+AGG + Chr8:74440440-74440459 MsG0880046529.01.T01:CDS 55.0%
! TGGAGTATTACCAGTGGCGC+CGG - Chr8:74440411-74440430 None:intergenic 55.0%
!! GACAGGTACCGAACAGGTAC+CGG + Chr8:74440283-74440302 MsG0880046529.01.T01:CDS 55.0%
!! GCACTGGCTTGTGACTTTGC+AGG + Chr8:74437462-74437481 MsG0880046529.01.T01:intron 55.0%
!! TACCGAACAGGTACCGGAAC+AGG + Chr8:74440289-74440308 MsG0880046529.01.T01:CDS 55.0%
AACAGGCACAGGCACCAGCA+CGG + Chr8:74440335-74440354 MsG0880046529.01.T01:CDS 60.0%
ATGGGAACTGGCACCAGCAC+CGG + Chr8:74440389-74440408 MsG0880046529.01.T01:CDS 60.0%
CATGGAACCACCCCGTCAAC+AGG + Chr8:74440318-74440337 MsG0880046529.01.T01:CDS 60.0%
CTGGTGCCTGTGCCTGTTGA+CGG - Chr8:74440333-74440352 None:intergenic 60.0%
GTGCCTACCCTTCAAGTGCC+AGG + Chr8:74437628-74437647 MsG0880046529.01.T01:CDS 60.0%
TGGTGCCTGTGCCTGTTGAC+GGG - Chr8:74440332-74440351 None:intergenic 60.0%
TTCCATGCCGGTGCCTGTTC+CGG - Chr8:74440305-74440324 None:intergenic 60.0%
TTGACGGGGTGGTTCCATGC+CGG - Chr8:74440317-74440336 None:intergenic 60.0%
! GCTCCTGGTGGTGTGTTAGG+AGG + Chr8:74440443-74440462 MsG0880046529.01.T01:CDS 60.0%
! TGCTGGTGCCAGTTCCCATG+CGG - Chr8:74440388-74440407 None:intergenic 60.0%
!! ACAGGTACCGGAACAGGCAC+CGG + Chr8:74440295-74440314 MsG0880046529.01.T01:CDS 60.0%
!! CCCATCGACAGGTACCGAAC+AGG + Chr8:74440277-74440296 MsG0880046529.01.T01:CDS 60.0%
ACAGGCACAGGCACCAGCAC+GGG + Chr8:74440336-74440355 MsG0880046529.01.T01:CDS 65.0%
ACCACCCCGTCAACAGGCAC+AGG + Chr8:74440324-74440343 MsG0880046529.01.T01:CDS 65.0%
ACTGGCACAGGCACCAGCAC+GGG + Chr8:74440360-74440379 MsG0880046529.01.T01:CDS 65.0%
CACTGGCACAGGCACCAGCA+CGG + Chr8:74440359-74440378 MsG0880046529.01.T01:CDS 65.0%
GGCAGTGGTATGGGGCCTTC+TGG + Chr8:74440470-74440489 MsG0880046529.01.T01:CDS 65.0%
GGTGCCTGTGCCTGTTGACG+GGG - Chr8:74440331-74440350 None:intergenic 65.0%
!! ATGGGGCCTTCTGGAGCTGG+AGG + Chr8:74440479-74440498 MsG0880046529.01.T01:CDS 65.0%
!! ATTACCAGTGGCGCCGGTGC+TGG - Chr8:74440405-74440424 None:intergenic 65.0%
!! GGTATGGGGCCTTCTGGAGC+TGG + Chr8:74440476-74440495 MsG0880046529.01.T01:CDS 65.0%
!! TACCGGAACAGGCACCGGCA+TGG + Chr8:74440300-74440319 MsG0880046529.01.T01:CDS 65.0%
ACAGGCACCAGCACGGGCAC+TGG + Chr8:74440342-74440361 MsG0880046529.01.T01:CDS 70.0%
GCCTGTGCCTGTTGACGGGG+TGG - Chr8:74440328-74440347 None:intergenic 70.0%
TTCCCATGCGGTGCCCGTGC+TGG - Chr8:74440376-74440395 None:intergenic 70.0%
! CACCAGCACGGGCACCGCAT+GGG + Chr8:74440371-74440390 MsG0880046529.01.T01:CDS 70.0%
! CACGGGCACCGCATGGGAAC+TGG + Chr8:74440377-74440396 MsG0880046529.01.T01:CDS 70.0%
!! ACCAGCACGGGCACTGGCAC+AGG + Chr8:74440348-74440367 MsG0880046529.01.T01:CDS 70.0%
GCCTGTGCCAGTGCCCGTGC+TGG - Chr8:74440352-74440371 None:intergenic 75.0%
! GCACCAGCACGGGCACCGCA+TGG + Chr8:74440370-74440389 MsG0880046529.01.T01:CDS 75.0%
!!! GGCACCAGCACCGGCGCCAC+TGG + Chr8:74440398-74440417 MsG0880046529.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr8 gene 74436837 74440715 74436837 ID=MsG0880046529.01;Name=MsG0880046529.01
Chr8 mRNA 74436837 74440715 74436837 ID=MsG0880046529.01.T01;Parent=MsG0880046529.01;Name=MsG0880046529.01.T01;_AED=0.47;_eAED=0.50;_QI=191|0.33|0.5|1|0|0.25|4|117|187
Chr8 exon 74436837 74437087 74436837 ID=MsG0880046529.01.T01:exon:31024;Parent=MsG0880046529.01.T01
Chr8 exon 74437277 74437360 74437277 ID=MsG0880046529.01.T01:exon:31025;Parent=MsG0880046529.01.T01
Chr8 exon 74437568 74437649 74437568 ID=MsG0880046529.01.T01:exon:31026;Parent=MsG0880046529.01.T01
Chr8 exon 74440261 74440715 74440261 ID=MsG0880046529.01.T01:exon:31027;Parent=MsG0880046529.01.T01
Chr8 five_prime_UTR 74436837 74437027 74436837 ID=MsG0880046529.01.T01:five_prime_utr;Parent=MsG0880046529.01.T01
Chr8 CDS 74437028 74437087 74437028 ID=MsG0880046529.01.T01:cds;Parent=MsG0880046529.01.T01
Chr8 CDS 74437277 74437360 74437277 ID=MsG0880046529.01.T01:cds;Parent=MsG0880046529.01.T01
Chr8 CDS 74437568 74437649 74437568 ID=MsG0880046529.01.T01:cds;Parent=MsG0880046529.01.T01
Chr8 CDS 74440261 74440598 74440261 ID=MsG0880046529.01.T01:cds;Parent=MsG0880046529.01.T01
Chr8 three_prime_UTR 74440599 74440715 74440599 ID=MsG0880046529.01.T01:three_prime_utr;Parent=MsG0880046529.01.T01
Gene Sequence

>MsG0880046529.01.T01

ATGGCTTTTGCTACTCTTGCTCTTGTACTTCTTCTTTTGCCTTCACCGCCATTCCTTCAAGTGCTAATTGGTGCGTGTGCAAGGATGGAGCTGATGCAATCTTACAAAAGACCTTGGACTATGCTTGTGGAGCTGGAGCTGACTCTAACTCTTTTTATTGGTTTTTTCTTTCTATTTGTTCTTGATGAGCAGGTGTTAGTGGCTGTGCCTACCCTTCAAGTGCCAGGCACTAGCACAACAAGCCCATCGACAGGTACCGAACAGGTACCGGAACAGGCACCGGCATGGAACCACCCCGTCAACAGGCACAGGCACCAGCACGGGCACTGGCACAGGCACCAGCACGGGCACCGCATGGGAACTGGCACCAGCACCGGCGCCACTGGTAATACTCCATACAGTACAACAGCTCCTGGTGGTGTGTTAGGAGGTATAGGCAGTGGTATGGGGCCTTCTGGAGCTGGAGGAATGAATGATGATAGTCATGGTGGTCTTAGACTTGTGGACACTAGTTTCTTATCAATCCCTCTCTTTTCTGTCTTTATTATGTTTTGGTGGGGTTAA

Protein sequence

>MsG0880046529.01.T01

MAFATLALVLLLLPSPPFLQVLIGACARMELMQSYKRPWTMLVELELTLTLFIGFFFLFVLDEQVLVAVPTLQVPGTSTTSPSTGTEQVPEQAPAWNHPVNRHRHQHGHWHRHQHGHRMGTGTSTGATGNTPYSTTAPGGVLGGIGSGMGPSGAGGMNDDSHGGLRLVDTSFLSIPLFSVFIMFWWG*