AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004471.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004471.01.T01 MTR_1g080590 98.113 212 3 1 1 212 1 211 1.92e-147 409
MsG0180004471.01.T01 MTR_1g080590 98.000 150 2 1 63 212 1 149 4.82e-97 279
MsG0180004471.01.T01 MTR_7g115410 56.502 223 71 10 11 212 1 218 1.40e-41 140
MsG0180004471.01.T01 MTR_8g024650 59.783 92 33 3 7 96 6 95 1.67e-27 104
MsG0180004471.01.T01 MTR_3g097190 48.322 149 41 2 38 186 69 181 1.81e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004471.01.T01 AT5G28640 59.052 232 53 7 1 212 1 210 3.20e-57 180
MsG0180004471.01.T01 AT4G00850 38.596 228 95 9 7 202 6 220 2.02e-28 107
MsG0180004471.01.T01 AT4G00850 51.786 112 42 3 7 106 6 117 1.73e-26 102
MsG0180004471.01.T01 AT1G01160 62.500 72 26 1 2 72 3 74 5.85e-23 92.0
MsG0180004471.01.T01 AT1G01160 42.453 106 26 2 2 72 3 108 4.29e-16 74.3
MsG0180004471.01.T01 AT5G28640 47.059 170 48 7 63 212 1 148 3.22e-11 59.7
MsG0180004471.01.T01 AT5G28640 47.059 170 48 7 63 212 1 148 3.22e-11 59.7

Find 82 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTCTTGTGTAAAGTTT+TGG 0.241797 1:-78523212 MsG0180004471.01.T01:three_prime_UTR
CCTAATCCTCCTAACTAAAA+AGG 0.244213 1:+78523381 None:intergenic
GATGACACAACAACAATTAA+TGG 0.291040 1:-78523749 MsG0180004471.01.T01:CDS
CGGTGAGCTTGCCAGAGTTC+TGG 0.291829 1:+78524782 None:intergenic
GTTTCTTTCTGCTCTTGTTC+AGG 0.296487 1:-78525158 MsG0180004471.01.T01:five_prime_UTR
ACCCTTTACCTAAAATCTTC+TGG 0.314141 1:-78523451 MsG0180004471.01.T01:CDS
CAGGGTCACACACCTTTGTT+TGG 0.314789 1:-78525132 MsG0180004471.01.T01:five_prime_UTR
TCTGCTCTTGTTCAGGTCAC+AGG 0.322676 1:-78525151 MsG0180004471.01.T01:five_prime_UTR
GCCAGGCATAGTAGGTGGTT+GGG 0.340247 1:+78524315 None:intergenic
GATTTCTCTGCAGCCTTGAT+TGG 0.360123 1:+78524371 None:intergenic
TCATGGGCTGCATCTGCATC+AGG 0.386454 1:+78525059 None:intergenic
GGCCAGGCATAGTAGGTGGT+TGG 0.392149 1:+78524314 None:intergenic
TGATCAGTAGTGACGTTGTT+AGG 0.399937 1:+78525022 None:intergenic
TGCTGCATCATTCCACTTGA+AGG 0.403024 1:+78523808 None:intergenic
AATGAGGTTGCTCAATTTCA+AGG 0.409443 1:-78523183 MsG0180004471.01.T01:three_prime_UTR
TGGTAAAACTAATTAGTTCC+TGG 0.422692 1:-78523404 MsG0180004471.01.T01:three_prime_UTR
TTCAACAATCTTGAGAATCA+AGG 0.434695 1:+78524807 None:intergenic
CACTACTGATCATATTCAAC+AGG 0.437472 1:-78525011 MsG0180004471.01.T01:intron
TGTACCTGGCCAGGCATAGT+AGG 0.442060 1:+78524307 None:intergenic
CTGCTCTTGTTCAGGTCACA+GGG 0.442934 1:-78525150 MsG0180004471.01.T01:five_prime_UTR
GGGAATTAGTTAAGCAAGAA+TGG 0.444582 1:-78523424 MsG0180004471.01.T01:exon
CCAGGCATAGTAGGTGGTTG+GGG 0.455596 1:+78524316 None:intergenic
GGCAATTCATCGTTAGGTAC+TGG 0.456481 1:-78523598 MsG0180004471.01.T01:CDS
GGTCGTAGCTCGGCTGGTGA+TGG 0.457573 1:-78523559 MsG0180004471.01.T01:CDS
TACCTAAAATCTTCTGGTGA+TGG 0.461677 1:-78523445 MsG0180004471.01.T01:CDS
GGTAATATTATGAGGTGGGT+GGG 0.464527 1:+78525310 None:intergenic
ACCTAAAATCTTCTGGTGAT+GGG 0.465114 1:-78523444 MsG0180004471.01.T01:CDS
GCCGAGCTACGACCAAAATC+AGG 0.475093 1:+78523568 None:intergenic
GTTGGAGGCAATTCATCGTT+AGG 0.483523 1:-78523604 MsG0180004471.01.T01:CDS
ATAATTTCAGGAACCAATCA+AGG 0.484218 1:-78524384 MsG0180004471.01.T01:intron
TTTCTTTGAGGCGGCTAAAG+AGG 0.487663 1:+78525283 None:intergenic
CCCCAACCACCTACTATGCC+TGG 0.488367 1:-78524316 MsG0180004471.01.T01:CDS
AGATAGGGGTGTACCTGGCC+AGG 0.491173 1:+78524298 None:intergenic
GGATAGTAAGCTGCCATCAT+GGG 0.492977 1:+78525043 None:intergenic
TTCAAGTGGAATGATGCAGC+AGG 0.504147 1:-78523806 MsG0180004471.01.T01:CDS
CACTCGAATTCATACCGAGT+TGG 0.508517 1:+78523668 None:intergenic
AGGATAGTAAGCTGCCATCA+TGG 0.510940 1:+78525042 None:intergenic
GAGGCAATGGTAATATTATG+AGG 0.518176 1:+78525302 None:intergenic
CTTCACATGTTGCATAGTGA+AGG 0.521552 1:-78523634 MsG0180004471.01.T01:CDS
CAAGACATTGGAAGTGCTGA+TGG 0.526599 1:-78523517 MsG0180004471.01.T01:CDS
AGTGAAGGGGCTAACGTTGG+AGG 0.535342 1:-78523619 MsG0180004471.01.T01:CDS
GGCCGCGGTGGAAGCTCTAG+TGG 0.537316 1:-78523496 MsG0180004471.01.T01:CDS
AACAGAGAAACAGAAGAGTC+TGG 0.538077 1:+78525188 None:intergenic
CAAGCCTTGCAAAGCCAACT+CGG 0.540362 1:-78523682 MsG0180004471.01.T01:CDS
AGTTACTAGTACACAAACAT+AGG 0.546361 1:+78523248 None:intergenic
CTTCACTATGCAACATGTGA+AGG 0.550899 1:+78523635 None:intergenic
CTGTTCTTACTCAGCACACT+CGG 0.552381 1:+78524762 None:intergenic
GCAATGGTAATATTATGAGG+TGG 0.554152 1:+78525305 None:intergenic
TTCACATGTTGCATAGTGAA+GGG 0.554627 1:-78523633 MsG0180004471.01.T01:CDS
ATTGTTGAAAGCCAGAACTC+TGG 0.560643 1:-78524793 MsG0180004471.01.T01:CDS
ACCACCTACTATGCCTGGCC+AGG 0.560989 1:-78524311 MsG0180004471.01.T01:intron
TAAGTTGAATGAACATGTAG+AGG 0.561700 1:+78523149 None:intergenic
CAATGGTAATATTATGAGGT+GGG 0.562210 1:+78525306 None:intergenic
CTACACAACACTTAGAAGAG+TGG 0.563660 1:+78525258 None:intergenic
CATACCGAGTTGGCTTTGCA+AGG 0.565479 1:+78523678 None:intergenic
GGTGATGGTTTGCACGGTAG+TGG 0.566282 1:-78523544 MsG0180004471.01.T01:CDS
GGTAGTGGCAAGCAAGACAT+TGG 0.567432 1:-78523529 MsG0180004471.01.T01:CDS
TCTAGTGGTCACTCTGGTGA+TGG 0.573573 1:-78523481 MsG0180004471.01.T01:CDS
ATTGGAAGTGCTGATGGCCG+CGG 0.585066 1:-78523511 MsG0180004471.01.T01:CDS
GAGAATCAGCTATTGCAGCT+AGG 0.595794 1:+78524341 None:intergenic
TGGTAATATTATGAGGTGGG+TGG 0.602397 1:+78525309 None:intergenic
ACATTGCAGTACCCTTCAAG+TGG 0.608273 1:-78523820 MsG0180004471.01.T01:intron
TCGGCTGGTGATGGTTTGCA+CGG 0.610652 1:-78523550 MsG0180004471.01.T01:CDS
GCTGCATCATTCCACTTGAA+GGG 0.611938 1:+78523809 None:intergenic
CATAGTGAAGGGGCTAACGT+TGG 0.615754 1:-78523622 MsG0180004471.01.T01:CDS
AATTCATCGTTAGGTACTGG+AGG 0.617510 1:-78523595 MsG0180004471.01.T01:CDS
TGAGGCGGCTAAAGAGGCAA+TGG 0.620919 1:+78525289 None:intergenic
GGAAGCTCTAGTGGTCACTC+TGG 0.631800 1:-78523487 MsG0180004471.01.T01:CDS
ACCTGGCCAGGCATAGTAGG+TGG 0.636818 1:+78524310 None:intergenic
CTAAGTTCAAATCCAAACAA+AGG 0.637687 1:+78525120 None:intergenic
ATGAATTCGAGTGGAAGTCA+AGG 0.645385 1:-78523658 MsG0180004471.01.T01:CDS
GATGCAGATGCAGCCCATGA+TGG 0.647712 1:-78525056 MsG0180004471.01.T01:CDS
GCAGGGAGGACACTACATGC+AGG 0.651199 1:-78523788 MsG0180004471.01.T01:CDS
TCACATGTTGCATAGTGAAG+GGG 0.652179 1:-78523632 MsG0180004471.01.T01:CDS
ACATTAAGTTAAGTAGCTGA+AGG 0.653572 1:-78523352 MsG0180004471.01.T01:three_prime_UTR
AGTGGTCACTCTGGTGATGG+CGG 0.666560 1:-78523478 MsG0180004471.01.T01:CDS
CTGTTGAGCATACATAAGAG+AGG 0.666776 1:+78523717 None:intergenic
TCAAGTGGAATGATGCAGCA+GGG 0.669197 1:-78523805 MsG0180004471.01.T01:CDS
CAACTCGGTATGAATTCGAG+TGG 0.681006 1:-78523667 MsG0180004471.01.T01:CDS
GGAAGTGCTGATGGCCGCGG+TGG 0.694316 1:-78523508 MsG0180004471.01.T01:CDS
AGTGGAATGATGCAGCAGGG+AGG 0.729356 1:-78523802 MsG0180004471.01.T01:CDS
GACCACTAGAGCTTCCACCG+CGG 0.784566 1:+78523494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAAATAGTTAAAAAA+AGG + Chr1:78523593-78523612 None:intergenic 10.0%
!!! TTGTTTTATGTTTAATTAAA+AGG - Chr1:78525168-78525187 MsG0180004471.01.T01:five_prime_UTR 10.0%
!! AAATAATAGTAAAATGTATC+AGG - Chr1:78524490-78524509 MsG0180004471.01.T01:intron 15.0%
!! ATATATACCTAAACAATTAT+TGG - Chr1:78524048-78524067 MsG0180004471.01.T01:intron 15.0%
!!! TTTATTTTATTAAGGTTTGT+GGG + Chr1:78523831-78523850 None:intergenic 15.0%
!! AAACATATTCATATGTACAA+GGG + Chr1:78524418-78524437 None:intergenic 20.0%
!! GTATTAATTATGTGTACATT+TGG - Chr1:78524465-78524484 MsG0180004471.01.T01:intron 20.0%
!! GTGAAAAATGAAAATTAGAA+AGG + Chr1:78524324-78524343 None:intergenic 20.0%
!! TAAACATATTCATATGTACA+AGG + Chr1:78524419-78524438 None:intergenic 20.0%
!!! CTTTATTTTATTAAGGTTTG+TGG + Chr1:78523832-78523851 None:intergenic 20.0%
!!! TTATTTTATTAAGGTTTGTG+GGG + Chr1:78523830-78523849 None:intergenic 20.0%
!!! TTTACTAGTATTAGCTTTTT+TGG - Chr1:78523967-78523986 MsG0180004471.01.T01:intron 20.0%
! ATTAATACTACTAAGCATCA+TGG + Chr1:78524453-78524472 None:intergenic 25.0%
! GAAAATTAGAAAGGAAACTA+GGG + Chr1:78524315-78524334 None:intergenic 25.0%
! TATAGCACCAATAATTGTTT+AGG + Chr1:78524058-78524077 None:intergenic 25.0%
! TGAAAATTAGAAAGGAAACT+AGG + Chr1:78524316-78524335 None:intergenic 25.0%
!! AACACAAATTTCTTCTAAAG+AGG - Chr1:78524540-78524559 MsG0180004471.01.T01:intron 25.0%
!! AACATTCTGAAAATAGATAG+GGG + Chr1:78524178-78524197 None:intergenic 25.0%
!! ACAACATTCTGAAAATAGAT+AGG + Chr1:78524180-78524199 None:intergenic 25.0%
!! ACACAAATTTCTTCTAAAGA+GGG - Chr1:78524541-78524560 MsG0180004471.01.T01:intron 25.0%
!! CAACATTCTGAAAATAGATA+GGG + Chr1:78524179-78524198 None:intergenic 25.0%
!! CTAAAATGTTACAACCTTTT+TGG - Chr1:78523913-78523932 MsG0180004471.01.T01:intron 25.0%
!!! ATTATTGGTGCTATAATTTC+AGG - Chr1:78524063-78524082 MsG0180004471.01.T01:intron 25.0%
AAAACATCTAGACACACAAT+AGG + Chr1:78524388-78524407 None:intergenic 30.0%
ACAAATCAATCATTGTTGTG+AGG + Chr1:78524234-78524253 None:intergenic 30.0%
ACATAATAAGAGCTAGAGTT+TGG + Chr1:78524292-78524311 None:intergenic 30.0%
ACATTAAGTTAAGTAGCTGA+AGG - Chr1:78525107-78525126 MsG0180004471.01.T01:five_prime_UTR 30.0%
AGATCAAAATTCTGCTTACT+TGG - Chr1:78524011-78524030 MsG0180004471.01.T01:intron 30.0%
AGTTACTAGTACACAAACAT+AGG + Chr1:78525214-78525233 None:intergenic 30.0%
ATAATTTCAGGAACCAATCA+AGG - Chr1:78524075-78524094 MsG0180004471.01.T01:intron 30.0%
CAATGGTAATATTATGAGGT+GGG + Chr1:78523156-78523175 None:intergenic 30.0%
CCAATGGAATTGAAACAAAA+AGG + Chr1:78523496-78523515 None:intergenic 30.0%
CTAAGTTCAAATCCAAACAA+AGG + Chr1:78523342-78523361 None:intergenic 30.0%
GATGACACAACAACAATTAA+TGG - Chr1:78524710-78524729 MsG0180004471.01.T01:intron 30.0%
GGGTTTATATTTAGACACAT+AGG - Chr1:78524561-78524580 MsG0180004471.01.T01:intron 30.0%
TGGTAAAACTAATTAGTTCC+TGG - Chr1:78525055-78525074 MsG0180004471.01.T01:CDS 30.0%
TTCAACAATCTTGAGAATCA+AGG + Chr1:78523655-78523674 None:intergenic 30.0%
! ATTACTGCTATTTGACCATT+TGG - Chr1:78524597-78524616 MsG0180004471.01.T01:intron 30.0%
! TATGCTCTTGTGTAAAGTTT+TGG - Chr1:78525247-78525266 MsG0180004471.01.T01:five_prime_UTR 30.0%
!! ACCAGAAGATTTTAGGTAAA+GGG + Chr1:78525012-78525031 None:intergenic 30.0%
!! CCTTTTTGTTTCAATTCCAT+TGG - Chr1:78523493-78523512 MsG0180004471.01.T01:CDS 30.0%
!!! ACTAGTATTAGCTTTTTTGG+TGG - Chr1:78523970-78523989 MsG0180004471.01.T01:intron 30.0%
!!! CTAGTATTAGCTTTTTTGGT+GGG - Chr1:78523971-78523990 MsG0180004471.01.T01:intron 30.0%
!!! GTCATCATGTTTTGAAACTT+TGG + Chr1:78523887-78523906 None:intergenic 30.0%
!!! TAGTATTAGCTTTTTTGGTG+GGG - Chr1:78523972-78523991 MsG0180004471.01.T01:intron 30.0%
!!! TGTCACTTTCTATATTTTGC+AGG - Chr1:78523773-78523792 MsG0180004471.01.T01:CDS 30.0%
AAGAGCTAGAGTTTGGTAAA+TGG + Chr1:78524285-78524304 None:intergenic 35.0%
AATGAGGTTGCTCAATTTCA+AGG - Chr1:78525276-78525295 MsG0180004471.01.T01:five_prime_UTR 35.0%
ACCCTTTACCTAAAATCTTC+TGG - Chr1:78525008-78525027 MsG0180004471.01.T01:intron 35.0%
ACCTAAAATCTTCTGGTGAT+GGG - Chr1:78525015-78525034 MsG0180004471.01.T01:CDS 35.0%
AGGAGAAGAAGAAGAAAGAA+AGG + Chr1:78523476-78523495 None:intergenic 35.0%
ATGTCATTCAGAAGATTGTG+AGG + Chr1:78524623-78524642 None:intergenic 35.0%
CACTACTGATCATATTCAAC+AGG - Chr1:78523448-78523467 MsG0180004471.01.T01:CDS 35.0%
CCTAATCCTCCTAACTAAAA+AGG + Chr1:78525081-78525100 None:intergenic 35.0%
GAGGCAATGGTAATATTATG+AGG + Chr1:78523160-78523179 None:intergenic 35.0%
GCAATGGTAATATTATGAGG+TGG + Chr1:78523157-78523176 None:intergenic 35.0%
GGGAATTAGTTAAGCAAGAA+TGG - Chr1:78525035-78525054 MsG0180004471.01.T01:CDS 35.0%
TACCTAAAATCTTCTGGTGA+TGG - Chr1:78525014-78525033 MsG0180004471.01.T01:CDS 35.0%
TTCACATGTTGCATAGTGAA+GGG - Chr1:78524826-78524845 MsG0180004471.01.T01:CDS 35.0%
! AATTGAGCAACCTCATTTTC+TGG + Chr1:78525273-78525292 None:intergenic 35.0%
! AGAAGAGTGGTTTTTCTTTG+AGG + Chr1:78523191-78523210 None:intergenic 35.0%
!! AAAGTTTTGGCCAGAAAATG+AGG - Chr1:78525260-78525279 MsG0180004471.01.T01:five_prime_UTR 35.0%
!! CACCAGAAGATTTTAGGTAA+AGG + Chr1:78525013-78525032 None:intergenic 35.0%
!!! AGTATTAGCTTTTTTGGTGG+GGG - Chr1:78523973-78523992 MsG0180004471.01.T01:intron 35.0%
!!! CCTTTTTAGTTAGGAGGATT+AGG - Chr1:78525078-78525097 MsG0180004471.01.T01:exon 35.0%
!!! TTTTTCTAAGATGTGGGAGT+GGG - Chr1:78523797-78523816 MsG0180004471.01.T01:CDS 35.0%
AACAGAGAAACAGAAGAGTC+TGG + Chr1:78523274-78523293 None:intergenic 40.0%
ATGAATTCGAGTGGAAGTCA+AGG - Chr1:78524801-78524820 MsG0180004471.01.T01:CDS 40.0%
ATTGTTGAAAGCCAGAACTC+TGG - Chr1:78523666-78523685 MsG0180004471.01.T01:CDS 40.0%
CTACACAACACTTAGAAGAG+TGG + Chr1:78523204-78523223 None:intergenic 40.0%
CTGTTGAGCATACATAAGAG+AGG + Chr1:78524745-78524764 None:intergenic 40.0%
CTTCACATGTTGCATAGTGA+AGG - Chr1:78524825-78524844 MsG0180004471.01.T01:CDS 40.0%
CTTCACTATGCAACATGTGA+AGG + Chr1:78524827-78524846 None:intergenic 40.0%
GTTAGTACAAGTGACCACTT+AGG - Chr1:78524198-78524217 MsG0180004471.01.T01:intron 40.0%
GTTTCTTTCTGCTCTTGTTC+AGG - Chr1:78523301-78523320 MsG0180004471.01.T01:three_prime_UTR 40.0%
TACAAGTGACCACTTAGGAA+GGG - Chr1:78524203-78524222 MsG0180004471.01.T01:intron 40.0%
TCAAGATGCTGTTGCCAAAA+AGG + Chr1:78523930-78523949 None:intergenic 40.0%
TCACATGTTGCATAGTGAAG+GGG - Chr1:78524827-78524846 MsG0180004471.01.T01:CDS 40.0%
TGATCAGTAGTGACGTTGTT+AGG + Chr1:78523440-78523459 None:intergenic 40.0%
! AAAATAGATAGGGGTGTACC+TGG + Chr1:78524169-78524188 None:intergenic 40.0%
! ACTGGAGGTTTTCCTGATTT+TGG - Chr1:78524879-78524898 MsG0180004471.01.T01:intron 40.0%
! TCCCATCACCAGAAGATTTT+AGG + Chr1:78525019-78525038 None:intergenic 40.0%
!! AATTCATCGTTAGGTACTGG+AGG - Chr1:78524864-78524883 MsG0180004471.01.T01:intron 40.0%
!! AGAGTGGTTTTTCTTTGAGG+CGG + Chr1:78523188-78523207 None:intergenic 40.0%
!! AGCAGAGAAAGAGTATCCAA+TGG + Chr1:78523512-78523531 None:intergenic 40.0%
!!! AGTTCCTGGCCTTTTTAGTT+AGG - Chr1:78525069-78525088 MsG0180004471.01.T01:CDS 40.0%
!!! CTTTTTCTAAGATGTGGGAG+TGG - Chr1:78523796-78523815 MsG0180004471.01.T01:CDS 40.0%
!!! GCAGGCTTTTTCTAAGATGT+GGG - Chr1:78523791-78523810 MsG0180004471.01.T01:CDS 40.0%
!!! TGCAGGCTTTTTCTAAGATG+TGG - Chr1:78523790-78523809 MsG0180004471.01.T01:CDS 40.0%
ACAAGTGACCACTTAGGAAG+GGG - Chr1:78524204-78524223 MsG0180004471.01.T01:intron 45.0%
ACATTGCAGTACCCTTCAAG+TGG - Chr1:78524639-78524658 MsG0180004471.01.T01:intron 45.0%
AGGATAGTAAGCTGCCATCA+TGG + Chr1:78523420-78523439 None:intergenic 45.0%
CAACTCGGTATGAATTCGAG+TGG - Chr1:78524792-78524811 MsG0180004471.01.T01:CDS 45.0%
CACTCGAATTCATACCGAGT+TGG + Chr1:78524794-78524813 None:intergenic 45.0%
CAGAAGATTGTGAGGCCAAA+TGG + Chr1:78524615-78524634 None:intergenic 45.0%
CTGTTCTTACTCAGCACACT+CGG + Chr1:78523700-78523719 None:intergenic 45.0%
GAGAATCAGCTATTGCAGCT+AGG + Chr1:78524121-78524140 None:intergenic 45.0%
GATTTCTCTGCAGCCTTGAT+TGG + Chr1:78524091-78524110 None:intergenic 45.0%
GCTGCATCATTCCACTTGAA+GGG + Chr1:78524653-78524672 None:intergenic 45.0%
GGATAGTAAGCTGCCATCAT+GGG + Chr1:78523419-78523438 None:intergenic 45.0%
GGCAATTCATCGTTAGGTAC+TGG - Chr1:78524861-78524880 MsG0180004471.01.T01:intron 45.0%
GTACAAGTGACCACTTAGGA+AGG - Chr1:78524202-78524221 MsG0180004471.01.T01:intron 45.0%
GTTGGAGGCAATTCATCGTT+AGG - Chr1:78524855-78524874 MsG0180004471.01.T01:intron 45.0%
TCAAGTGGAATGATGCAGCA+GGG - Chr1:78524654-78524673 MsG0180004471.01.T01:intron 45.0%
TCCTCCTAACTAAAAAGGCC+AGG + Chr1:78525076-78525095 None:intergenic 45.0%
TGCTGCATCATTCCACTTGA+AGG + Chr1:78524654-78524673 None:intergenic 45.0%
TTCAAGTGGAATGATGCAGC+AGG - Chr1:78524653-78524672 MsG0180004471.01.T01:intron 45.0%
!! CAAGACATTGGAAGTGCTGA+TGG - Chr1:78524942-78524961 MsG0180004471.01.T01:intron 45.0%
!! TCCTGATTTTGGTCGTAGCT+CGG - Chr1:78524890-78524909 MsG0180004471.01.T01:intron 45.0%
!! TTTCTTTGAGGCGGCTAAAG+AGG + Chr1:78523179-78523198 None:intergenic 45.0%
!!! ATTAGCTTTTTTGGTGGGGG+AGG - Chr1:78523976-78523995 MsG0180004471.01.T01:intron 45.0%
!!! TCCTGGCCTTTTTAGTTAGG+AGG - Chr1:78525072-78525091 MsG0180004471.01.T01:CDS 45.0%
!!! TTAGCTTTTTTGGTGGGGGA+GGG - Chr1:78523977-78523996 MsG0180004471.01.T01:intron 45.0%
!! AAAATAAATAGTTAAAAAAA+GGG + Chr1:78523592-78523611 None:intergenic 5.0%
!!! AAAAAAACTTTATTTTATTA+AGG + Chr1:78523839-78523858 None:intergenic 5.0%
!!! TTTGAAATAAAATTTATTTT+TGG - Chr1:78524516-78524535 MsG0180004471.01.T01:intron 5.0%
CAAGCCTTGCAAAGCCAACT+CGG - Chr1:78524777-78524796 MsG0180004471.01.T01:CDS 50.0%
CAGGGTCACACACCTTTGTT+TGG - Chr1:78523327-78523346 MsG0180004471.01.T01:three_prime_UTR 50.0%
CATAGTGAAGGGGCTAACGT+TGG - Chr1:78524837-78524856 MsG0180004471.01.T01:intron 50.0%
CTGCTCTTGTTCAGGTCACA+GGG - Chr1:78523309-78523328 MsG0180004471.01.T01:three_prime_UTR 50.0%
TCTAGTGGTCACTCTGGTGA+TGG - Chr1:78524978-78524997 MsG0180004471.01.T01:intron 50.0%
TCTGCTCTTGTTCAGGTCAC+AGG - Chr1:78523308-78523327 MsG0180004471.01.T01:three_prime_UTR 50.0%
! GGTAGTGGCAAGCAAGACAT+TGG - Chr1:78524930-78524949 MsG0180004471.01.T01:intron 50.0%
!! CATACCGAGTTGGCTTTGCA+AGG + Chr1:78524784-78524803 None:intergenic 50.0%
AGTGAAGGGGCTAACGTTGG+AGG - Chr1:78524840-78524859 MsG0180004471.01.T01:intron 55.0%
AGTGGAATGATGCAGCAGGG+AGG - Chr1:78524657-78524676 MsG0180004471.01.T01:intron 55.0%
CCAGGCATAGTAGGTGGTTG+GGG + Chr1:78524146-78524165 None:intergenic 55.0%
GAGGTGAACCCCTTCCTAAG+TGG + Chr1:78524215-78524234 None:intergenic 55.0%
GATGCAGATGCAGCCCATGA+TGG - Chr1:78523403-78523422 MsG0180004471.01.T01:three_prime_UTR 55.0%
GCCAGGCATAGTAGGTGGTT+GGG + Chr1:78524147-78524166 None:intergenic 55.0%
GCCGAGCTACGACCAAAATC+AGG + Chr1:78524894-78524913 None:intergenic 55.0%
TGAGGCGGCTAAAGAGGCAA+TGG + Chr1:78523173-78523192 None:intergenic 55.0%
TGTACCTGGCCAGGCATAGT+AGG + Chr1:78524155-78524174 None:intergenic 55.0%
! GGAAGCTCTAGTGGTCACTC+TGG - Chr1:78524972-78524991 MsG0180004471.01.T01:intron 55.0%
! GGTGATGGTTTGCACGGTAG+TGG - Chr1:78524915-78524934 MsG0180004471.01.T01:intron 55.0%
! TCATGGGCTGCATCTGCATC+AGG + Chr1:78523403-78523422 None:intergenic 55.0%
!! AGTGGTCACTCTGGTGATGG+CGG - Chr1:78524981-78525000 MsG0180004471.01.T01:intron 55.0%
!! ATTGGAAGTGCTGATGGCCG+CGG - Chr1:78524948-78524967 MsG0180004471.01.T01:intron 55.0%
!! GATTTTGGTCGTAGCTCGGC+TGG - Chr1:78524894-78524913 MsG0180004471.01.T01:intron 55.0%
!! TCGGCTGGTGATGGTTTGCA+CGG - Chr1:78524909-78524928 MsG0180004471.01.T01:intron 55.0%
ACCACCTACTATGCCTGGCC+AGG - Chr1:78524148-78524167 MsG0180004471.01.T01:intron 60.0%
ACCTGGCCAGGCATAGTAGG+TGG + Chr1:78524152-78524171 None:intergenic 60.0%
CCCCAACCACCTACTATGCC+TGG - Chr1:78524143-78524162 MsG0180004471.01.T01:intron 60.0%
CGGTGAGCTTGCCAGAGTTC+TGG + Chr1:78523680-78523699 None:intergenic 60.0%
GACCACTAGAGCTTCCACCG+CGG + Chr1:78524968-78524987 None:intergenic 60.0%
GCAGGGAGGACACTACATGC+AGG - Chr1:78524671-78524690 MsG0180004471.01.T01:intron 60.0%
GGCCAGGCATAGTAGGTGGT+TGG + Chr1:78524148-78524167 None:intergenic 60.0%
! AGATAGGGGTGTACCTGGCC+AGG + Chr1:78524164-78524183 None:intergenic 60.0%
!!! GCTTTTTTGGTGGGGGAGGG+AGG - Chr1:78523980-78523999 MsG0180004471.01.T01:intron 60.0%
GGTCGTAGCTCGGCTGGTGA+TGG - Chr1:78524900-78524919 MsG0180004471.01.T01:intron 65.0%
! GGCCGCGGTGGAAGCTCTAG+TGG - Chr1:78524963-78524982 MsG0180004471.01.T01:intron 70.0%
!! GGAAGTGCTGATGGCCGCGG+TGG - Chr1:78524951-78524970 MsG0180004471.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78523152 78525329 78523152 ID=MsG0180004471.01;Name=MsG0180004471.01
Chr1 mRNA 78523152 78525329 78523152 ID=MsG0180004471.01.T01;Parent=MsG0180004471.01;Name=MsG0180004471.01.T01;_AED=0.47;_eAED=0.47;_QI=237|1|1|1|0.66|0.75|4|286|212
Chr1 exon 78523152 78523833 78523152 ID=MsG0180004471.01.T01:exon:45425;Parent=MsG0180004471.01.T01
Chr1 exon 78524312 78524396 78524312 ID=MsG0180004471.01.T01:exon:45424;Parent=MsG0180004471.01.T01
Chr1 exon 78524772 78524848 78524772 ID=MsG0180004471.01.T01:exon:45423;Parent=MsG0180004471.01.T01
Chr1 exon 78525012 78525329 78525012 ID=MsG0180004471.01.T01:exon:45422;Parent=MsG0180004471.01.T01
Chr1 five_prime_UTR 78525093 78525329 78525093 ID=MsG0180004471.01.T01:five_prime_utr;Parent=MsG0180004471.01.T01
Chr1 CDS 78525012 78525092 78525012 ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01
Chr1 CDS 78524772 78524848 78524772 ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01
Chr1 CDS 78524312 78524396 78524312 ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01
Chr1 CDS 78523438 78523833 78523438 ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01
Chr1 three_prime_UTR 78523152 78523437 78523152 ID=MsG0180004471.01.T01:three_prime_utr;Parent=MsG0180004471.01.T01
Gene Sequence

>MsG0180004471.01.T01

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTACTATCCTAACAACGTCACTACTGATCATATTCAACAGTATCTTGATGAGAACAAGTCCTTGATTCTCAAGATTGTTGAAAGCCAGAACTCTGGCAAGCTCACCGAGTGTGCTGAGAACCAATCAAGGCTGCAGAGAAATCTCATGTACCTAGCTGCAATAGCTGATTCTCAACCCCAACCACCTACTATGCCTGGCCAGTACCCTTCAAGTGGAATGATGCAGCAGGGAGGACACTACATGCAGGCTCAACAAGCTCAGCAGATGACACAACAACAATTAATGGCTGCACGTTCCTCTCTTATGTATGCTCAACAGCTTCAACAGCAGCAAGCCTTGCAAAGCCAACTCGGTATGAATTCGAGTGGAAGTCAAGGCCTTCACATGTTGCATAGTGAAGGGGCTAACGTTGGAGGCAATTCATCGTTAGGTACTGGAGGTTTTCCTGATTTTGGTCGTAGCTCGGCTGGTGATGGTTTGCACGGTAGTGGCAAGCAAGACATTGGAAGTGCTGATGGCCGCGGTGGAAGCTCTAGTGGTCACTCTGGTGATGGCGGCGAAACCCTTTACCTAAAATCTTCTGGTGATGGGAATTAG

Protein sequence

>MsG0180004471.01.T01

MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQSRLQRNLMYLAAIADSQPQPPTMPGQYPSSGMMQQGGHYMQAQQAQQMTQQQLMAARSSLMYAQQLQQQQALQSQLGMNSSGSQGLHMLHSEGANVGGNSSLGTGGFPDFGRSSAGDGLHGSGKQDIGSADGRGGSSSGHSGDGGETLYLKSSGDGN*