Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004471.01.T01 | XP_003590996.1 | 98.113 | 212 | 3 | 1 | 1 | 212 | 1 | 211 | 1.59E-143 | 409 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004471.01.T01 | Q8L8A5 | 59.052 | 232 | 53 | 7 | 1 | 212 | 1 | 210 | 3.13E-56 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004471.01.T01 | G7I6V2 | 98.113 | 212 | 3 | 1 | 1 | 212 | 1 | 211 | 7.58e-144 | 409 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048258.01 | MsG0180004471.01 | 0.811239 | 7.734826e-51 | 4.762728e-48 |
MsG0180001588.01 | MsG0180004471.01 | 0.829203 | 5.871608e-55 | 5.968842e-52 |
MsG0180001719.01 | MsG0180004471.01 | 0.813712 | 2.227910e-51 | 1.465835e-48 |
MsG0180003905.01 | MsG0180004471.01 | 0.803806 | 2.923819e-49 | 1.483231e-46 |
MsG0180004120.01 | MsG0180004471.01 | 0.824149 | 9.437216e-54 | 8.290684e-51 |
MsG0180004471.01 | MsG0180004538.01 | 0.813694 | 2.247875e-51 | 1.478230e-48 |
MsG0180004471.01 | MsG0180004583.01 | 0.812188 | 4.807322e-51 | 3.036072e-48 |
MsG0180004471.01 | MsG0180005048.01 | 0.823904 | 1.077231e-53 | 9.398666e-51 |
MsG0180004471.01 | MsG0180006062.01 | 0.828564 | 8.382613e-55 | 8.362679e-52 |
MsG0180004471.01 | MsG0180006133.01 | 0.839943 | 1.170703e-57 | 1.642234e-54 |
MsG0180004471.01 | MsG0280006717.01 | 0.846244 | 2.452766e-59 | 4.195032e-56 |
MsG0180004471.01 | MsG0280007092.01 | 0.812534 | 4.039692e-51 | 2.575120e-48 |
MsG0180004471.01 | MsG0280010429.01 | 0.807983 | 3.870987e-50 | 2.186960e-47 |
MsG0180004471.01 | MsG0380012818.01 | 0.806838 | 6.773207e-50 | 3.714302e-47 |
MsG0180004471.01 | MsG0380014542.01 | 0.804731 | 1.876859e-49 | 9.751237e-47 |
MsG0180004471.01 | MsG0380014544.01 | 0.810949 | 8.939235e-51 | 5.462978e-48 |
MsG0180004471.01 | MsG0380014666.01 | 0.841851 | 3.698705e-58 | 5.505219e-55 |
MsG0180004471.01 | MsG0380015340.01 | 0.817845 | 2.669839e-52 | 1.966138e-49 |
MsG0180004471.01 | MsG0380015402.01 | 0.830235 | 3.292075e-55 | 3.448347e-52 |
MsG0180004471.01 | MsG0380017150.01 | 0.813540 | 2.430194e-51 | 1.591488e-48 |
MsG0180004471.01 | MsG0380017181.01 | 0.823313 | 1.481162e-53 | 1.270830e-50 |
MsG0180004471.01 | MsG0380017282.01 | 0.829106 | 6.196495e-55 | 6.280214e-52 |
MsG0180004471.01 | MsG0380017332.01 | 0.811176 | 7.979459e-51 | 4.905315e-48 |
MsG0180004471.01 | MsG0380017440.01 | 0.802354 | 5.837110e-49 | 2.853346e-46 |
MsG0180004471.01 | MsG0380017588.01 | 0.843908 | 1.048711e-58 | 1.665384e-55 |
MsG0180004471.01 | MsG0480018106.01 | 0.835730 | 1.415196e-56 | 1.745844e-53 |
MsG0180004471.01 | MsG0480018228.01 | 0.814889 | 1.224004e-51 | 8.313150e-49 |
MsG0180004471.01 | MsG0480019601.01 | 0.848845 | 4.728512e-60 | 8.793147e-57 |
MsG0180004471.01 | MsG0480020398.01 | 0.830671 | 2.575613e-55 | 2.732321e-52 |
MsG0180004471.01 | MsG0480020937.01 | 0.845571 | 3.737376e-59 | 6.254821e-56 |
MsG0180004471.01 | MsG0480021100.01 | 0.821591 | 3.722606e-53 | 3.041399e-50 |
MsG0180004471.01 | MsG0480021301.01 | 0.837997 | 3.734560e-57 | 4.935636e-54 |
MsG0180004471.01 | MsG0480021456.01 | 0.828016 | 1.136001e-54 | 1.115441e-51 |
MsG0180004471.01 | MsG0480021704.01 | 0.803493 | 3.396312e-49 | 1.709154e-46 |
MsG0180004471.01 | MsG0480021740.01 | 0.803536 | 3.326216e-49 | 1.675802e-46 |
MsG0180004471.01 | MsG0480021773.01 | 0.818507 | 1.891034e-52 | 1.418195e-49 |
MsG0180004471.01 | MsG0480021902.01 | 0.823372 | 1.435178e-53 | 1.233317e-50 |
MsG0180004471.01 | MsG0480022307.01 | 0.839042 | 2.006839e-57 | 2.737830e-54 |
MsG0180004471.01 | MsG0480022320.01 | 0.807957 | 3.921555e-50 | 2.214047e-47 |
MsG0180004471.01 | MsG0480022682.01 | 0.801147 | 1.032611e-48 | 4.895488e-46 |
MsG0180004471.01 | MsG0480022784.01 | 0.825746 | 3.961296e-54 | 3.642681e-51 |
MsG0180004471.01 | MsG0480023003.01 | 0.803261 | 3.793779e-49 | 1.897758e-46 |
MsG0180004471.01 | MsG0480023424.01 | 0.846179 | 2.555712e-59 | 4.361818e-56 |
MsG0180004471.01 | MsG0480023426.01 | 0.850596 | 1.532680e-60 | 3.017745e-57 |
MsG0180004471.01 | MsG0480023428.01 | 0.807207 | 5.658313e-50 | 3.132733e-47 |
MsG0180004471.01 | MsG0480023626.01 | 0.847154 | 1.383836e-59 | 2.437537e-56 |
MsG0180004471.01 | MsG0480023653.01 | 0.803110 | 4.076638e-49 | 2.031333e-46 |
MsG0180004471.01 | MsG0480023706.01 | 0.852849 | 3.524056e-61 | 7.464722e-58 |
MsG0180004471.01 | MsG0480023842.01 | 0.803517 | 3.356362e-49 | 1.690145e-46 |
MsG0180004471.01 | MsG0480023913.01 | 0.828594 | 8.241625e-55 | 8.228982e-52 |
MsG0180004471.01 | MsG0480024019.01 | 0.846748 | 1.787294e-59 | 3.107435e-56 |
MsG0180004471.01 | MsG0580024060.01 | 0.800120 | 1.673132e-48 | 7.727807e-46 |
MsG0180004471.01 | MsG0580024158.01 | 0.800647 | 1.306259e-48 | 6.114769e-46 |
MsG0180004471.01 | MsG0580024276.01 | 0.839456 | 1.567736e-57 | 2.166249e-54 |
MsG0180004471.01 | MsG0580024835.01 | 0.824220 | 9.084828e-54 | 7.996783e-51 |
MsG0180004471.01 | MsG0580025203.01 | 0.811244 | 7.713761e-51 | 4.750446e-48 |
MsG0180004471.01 | MsG0580025504.01 | 0.836553 | 8.746702e-57 | 1.106046e-53 |
MsG0180004471.01 | MsG0580026343.01 | 0.801357 | 9.352856e-49 | 4.457590e-46 |
MsG0180004471.01 | MsG0580028927.01 | 0.823793 | 1.144135e-53 | 9.951552e-51 |
MsG0180004471.01 | MsG0580028955.01 | 0.883998 | 2.790560e-71 | 1.809657e-67 |
MsG0180004471.01 | MsG0680031356.01 | 0.801263 | 9.777367e-49 | 4.648830e-46 |
MsG0180004471.01 | MsG0680035776.01 | 0.817377 | 3.404374e-52 | 2.475180e-49 |
MsG0180004471.01 | MsG0680035792.01 | 0.880415 | 5.594080e-70 | 3.149334e-66 |
MsG0180004471.01 | MsG0780036534.01 | 0.806979 | 6.323760e-50 | 3.480422e-47 |
MsG0180004471.01 | MsG0780038736.01 | 0.817617 | 3.005186e-52 | 2.199249e-49 |
MsG0180004471.01 | MsG0780039536.01 | 0.843946 | 1.024900e-58 | 1.629410e-55 |
MsG0180004471.01 | MsG0780040620.01 | 0.808331 | 3.264906e-50 | 1.861638e-47 |
MsG0180004471.01 | MsG0780040641.01 | 0.831507 | 1.605513e-55 | 1.745841e-52 |
MsG0180004471.01 | MsG0780041273.01 | 0.827339 | 1.652233e-54 | 1.590676e-51 |
MsG0180004471.01 | MsG0780041359.01 | 0.820392 | 7.026488e-53 | 5.553056e-50 |
MsG0180004471.01 | MsG0780041546.01 | 0.805034 | 1.621781e-49 | 8.491462e-47 |
MsG0180004471.01 | MsG0780041660.01 | 0.821801 | 3.328841e-53 | 2.736078e-50 |
MsG0180004471.01 | MsG0880042833.01 | 0.816140 | 6.447454e-52 | 4.531560e-49 |
MsG0180004471.01 | MsG0880043907.01 | 0.816433 | 5.545250e-52 | 3.928493e-49 |
MsG0180004471.01 | MsG0880045015.01 | 0.830786 | 2.413571e-55 | 2.569088e-52 |
MsG0180004471.01 | MsG0880045647.01 | 0.818169 | 2.254875e-52 | 1.675369e-49 |
MsG0180004471.01 | MsG0880046529.01 | 0.830661 | 2.589506e-55 | 2.746198e-52 |
MsG0180004471.01 | MsG0880046904.01 | 0.823114 | 1.648957e-53 | 1.406949e-50 |
MsG0180004471.01 | MsG0880046905.01 | 0.826839 | 2.175880e-54 | 2.064109e-51 |
MsG0180004471.01 | MsG0880047649.01 | 0.808152 | 3.563584e-50 | 2.022405e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004471.01.T01 | MTR_1g080590 | 98.113 | 212 | 3 | 1 | 1 | 212 | 1 | 211 | 1.92e-147 | 409 |
MsG0180004471.01.T01 | MTR_1g080590 | 98.000 | 150 | 2 | 1 | 63 | 212 | 1 | 149 | 4.82e-97 | 279 |
MsG0180004471.01.T01 | MTR_7g115410 | 56.502 | 223 | 71 | 10 | 11 | 212 | 1 | 218 | 1.40e-41 | 140 |
MsG0180004471.01.T01 | MTR_8g024650 | 59.783 | 92 | 33 | 3 | 7 | 96 | 6 | 95 | 1.67e-27 | 104 |
MsG0180004471.01.T01 | MTR_3g097190 | 48.322 | 149 | 41 | 2 | 38 | 186 | 69 | 181 | 1.81e-21 | 87.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180004471.01.T01 | AT5G28640 | 59.052 | 232 | 53 | 7 | 1 | 212 | 1 | 210 | 3.20e-57 | 180 |
MsG0180004471.01.T01 | AT4G00850 | 38.596 | 228 | 95 | 9 | 7 | 202 | 6 | 220 | 2.02e-28 | 107 |
MsG0180004471.01.T01 | AT4G00850 | 51.786 | 112 | 42 | 3 | 7 | 106 | 6 | 117 | 1.73e-26 | 102 |
MsG0180004471.01.T01 | AT1G01160 | 62.500 | 72 | 26 | 1 | 2 | 72 | 3 | 74 | 5.85e-23 | 92.0 |
MsG0180004471.01.T01 | AT1G01160 | 42.453 | 106 | 26 | 2 | 2 | 72 | 3 | 108 | 4.29e-16 | 74.3 |
MsG0180004471.01.T01 | AT5G28640 | 47.059 | 170 | 48 | 7 | 63 | 212 | 1 | 148 | 3.22e-11 | 59.7 |
MsG0180004471.01.T01 | AT5G28640 | 47.059 | 170 | 48 | 7 | 63 | 212 | 1 | 148 | 3.22e-11 | 59.7 |
Find 82 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGCTCTTGTGTAAAGTTT+TGG | 0.241797 | 1:-78523212 | MsG0180004471.01.T01:three_prime_UTR |
CCTAATCCTCCTAACTAAAA+AGG | 0.244213 | 1:+78523381 | None:intergenic |
GATGACACAACAACAATTAA+TGG | 0.291040 | 1:-78523749 | MsG0180004471.01.T01:CDS |
CGGTGAGCTTGCCAGAGTTC+TGG | 0.291829 | 1:+78524782 | None:intergenic |
GTTTCTTTCTGCTCTTGTTC+AGG | 0.296487 | 1:-78525158 | MsG0180004471.01.T01:five_prime_UTR |
ACCCTTTACCTAAAATCTTC+TGG | 0.314141 | 1:-78523451 | MsG0180004471.01.T01:CDS |
CAGGGTCACACACCTTTGTT+TGG | 0.314789 | 1:-78525132 | MsG0180004471.01.T01:five_prime_UTR |
TCTGCTCTTGTTCAGGTCAC+AGG | 0.322676 | 1:-78525151 | MsG0180004471.01.T01:five_prime_UTR |
GCCAGGCATAGTAGGTGGTT+GGG | 0.340247 | 1:+78524315 | None:intergenic |
GATTTCTCTGCAGCCTTGAT+TGG | 0.360123 | 1:+78524371 | None:intergenic |
TCATGGGCTGCATCTGCATC+AGG | 0.386454 | 1:+78525059 | None:intergenic |
GGCCAGGCATAGTAGGTGGT+TGG | 0.392149 | 1:+78524314 | None:intergenic |
TGATCAGTAGTGACGTTGTT+AGG | 0.399937 | 1:+78525022 | None:intergenic |
TGCTGCATCATTCCACTTGA+AGG | 0.403024 | 1:+78523808 | None:intergenic |
AATGAGGTTGCTCAATTTCA+AGG | 0.409443 | 1:-78523183 | MsG0180004471.01.T01:three_prime_UTR |
TGGTAAAACTAATTAGTTCC+TGG | 0.422692 | 1:-78523404 | MsG0180004471.01.T01:three_prime_UTR |
TTCAACAATCTTGAGAATCA+AGG | 0.434695 | 1:+78524807 | None:intergenic |
CACTACTGATCATATTCAAC+AGG | 0.437472 | 1:-78525011 | MsG0180004471.01.T01:intron |
TGTACCTGGCCAGGCATAGT+AGG | 0.442060 | 1:+78524307 | None:intergenic |
CTGCTCTTGTTCAGGTCACA+GGG | 0.442934 | 1:-78525150 | MsG0180004471.01.T01:five_prime_UTR |
GGGAATTAGTTAAGCAAGAA+TGG | 0.444582 | 1:-78523424 | MsG0180004471.01.T01:exon |
CCAGGCATAGTAGGTGGTTG+GGG | 0.455596 | 1:+78524316 | None:intergenic |
GGCAATTCATCGTTAGGTAC+TGG | 0.456481 | 1:-78523598 | MsG0180004471.01.T01:CDS |
GGTCGTAGCTCGGCTGGTGA+TGG | 0.457573 | 1:-78523559 | MsG0180004471.01.T01:CDS |
TACCTAAAATCTTCTGGTGA+TGG | 0.461677 | 1:-78523445 | MsG0180004471.01.T01:CDS |
GGTAATATTATGAGGTGGGT+GGG | 0.464527 | 1:+78525310 | None:intergenic |
ACCTAAAATCTTCTGGTGAT+GGG | 0.465114 | 1:-78523444 | MsG0180004471.01.T01:CDS |
GCCGAGCTACGACCAAAATC+AGG | 0.475093 | 1:+78523568 | None:intergenic |
GTTGGAGGCAATTCATCGTT+AGG | 0.483523 | 1:-78523604 | MsG0180004471.01.T01:CDS |
ATAATTTCAGGAACCAATCA+AGG | 0.484218 | 1:-78524384 | MsG0180004471.01.T01:intron |
TTTCTTTGAGGCGGCTAAAG+AGG | 0.487663 | 1:+78525283 | None:intergenic |
CCCCAACCACCTACTATGCC+TGG | 0.488367 | 1:-78524316 | MsG0180004471.01.T01:CDS |
AGATAGGGGTGTACCTGGCC+AGG | 0.491173 | 1:+78524298 | None:intergenic |
GGATAGTAAGCTGCCATCAT+GGG | 0.492977 | 1:+78525043 | None:intergenic |
TTCAAGTGGAATGATGCAGC+AGG | 0.504147 | 1:-78523806 | MsG0180004471.01.T01:CDS |
CACTCGAATTCATACCGAGT+TGG | 0.508517 | 1:+78523668 | None:intergenic |
AGGATAGTAAGCTGCCATCA+TGG | 0.510940 | 1:+78525042 | None:intergenic |
GAGGCAATGGTAATATTATG+AGG | 0.518176 | 1:+78525302 | None:intergenic |
CTTCACATGTTGCATAGTGA+AGG | 0.521552 | 1:-78523634 | MsG0180004471.01.T01:CDS |
CAAGACATTGGAAGTGCTGA+TGG | 0.526599 | 1:-78523517 | MsG0180004471.01.T01:CDS |
AGTGAAGGGGCTAACGTTGG+AGG | 0.535342 | 1:-78523619 | MsG0180004471.01.T01:CDS |
GGCCGCGGTGGAAGCTCTAG+TGG | 0.537316 | 1:-78523496 | MsG0180004471.01.T01:CDS |
AACAGAGAAACAGAAGAGTC+TGG | 0.538077 | 1:+78525188 | None:intergenic |
CAAGCCTTGCAAAGCCAACT+CGG | 0.540362 | 1:-78523682 | MsG0180004471.01.T01:CDS |
AGTTACTAGTACACAAACAT+AGG | 0.546361 | 1:+78523248 | None:intergenic |
CTTCACTATGCAACATGTGA+AGG | 0.550899 | 1:+78523635 | None:intergenic |
CTGTTCTTACTCAGCACACT+CGG | 0.552381 | 1:+78524762 | None:intergenic |
GCAATGGTAATATTATGAGG+TGG | 0.554152 | 1:+78525305 | None:intergenic |
TTCACATGTTGCATAGTGAA+GGG | 0.554627 | 1:-78523633 | MsG0180004471.01.T01:CDS |
ATTGTTGAAAGCCAGAACTC+TGG | 0.560643 | 1:-78524793 | MsG0180004471.01.T01:CDS |
ACCACCTACTATGCCTGGCC+AGG | 0.560989 | 1:-78524311 | MsG0180004471.01.T01:intron |
TAAGTTGAATGAACATGTAG+AGG | 0.561700 | 1:+78523149 | None:intergenic |
CAATGGTAATATTATGAGGT+GGG | 0.562210 | 1:+78525306 | None:intergenic |
CTACACAACACTTAGAAGAG+TGG | 0.563660 | 1:+78525258 | None:intergenic |
CATACCGAGTTGGCTTTGCA+AGG | 0.565479 | 1:+78523678 | None:intergenic |
GGTGATGGTTTGCACGGTAG+TGG | 0.566282 | 1:-78523544 | MsG0180004471.01.T01:CDS |
GGTAGTGGCAAGCAAGACAT+TGG | 0.567432 | 1:-78523529 | MsG0180004471.01.T01:CDS |
TCTAGTGGTCACTCTGGTGA+TGG | 0.573573 | 1:-78523481 | MsG0180004471.01.T01:CDS |
ATTGGAAGTGCTGATGGCCG+CGG | 0.585066 | 1:-78523511 | MsG0180004471.01.T01:CDS |
GAGAATCAGCTATTGCAGCT+AGG | 0.595794 | 1:+78524341 | None:intergenic |
TGGTAATATTATGAGGTGGG+TGG | 0.602397 | 1:+78525309 | None:intergenic |
ACATTGCAGTACCCTTCAAG+TGG | 0.608273 | 1:-78523820 | MsG0180004471.01.T01:intron |
TCGGCTGGTGATGGTTTGCA+CGG | 0.610652 | 1:-78523550 | MsG0180004471.01.T01:CDS |
GCTGCATCATTCCACTTGAA+GGG | 0.611938 | 1:+78523809 | None:intergenic |
CATAGTGAAGGGGCTAACGT+TGG | 0.615754 | 1:-78523622 | MsG0180004471.01.T01:CDS |
AATTCATCGTTAGGTACTGG+AGG | 0.617510 | 1:-78523595 | MsG0180004471.01.T01:CDS |
TGAGGCGGCTAAAGAGGCAA+TGG | 0.620919 | 1:+78525289 | None:intergenic |
GGAAGCTCTAGTGGTCACTC+TGG | 0.631800 | 1:-78523487 | MsG0180004471.01.T01:CDS |
ACCTGGCCAGGCATAGTAGG+TGG | 0.636818 | 1:+78524310 | None:intergenic |
CTAAGTTCAAATCCAAACAA+AGG | 0.637687 | 1:+78525120 | None:intergenic |
ATGAATTCGAGTGGAAGTCA+AGG | 0.645385 | 1:-78523658 | MsG0180004471.01.T01:CDS |
GATGCAGATGCAGCCCATGA+TGG | 0.647712 | 1:-78525056 | MsG0180004471.01.T01:CDS |
GCAGGGAGGACACTACATGC+AGG | 0.651199 | 1:-78523788 | MsG0180004471.01.T01:CDS |
TCACATGTTGCATAGTGAAG+GGG | 0.652179 | 1:-78523632 | MsG0180004471.01.T01:CDS |
ACATTAAGTTAAGTAGCTGA+AGG | 0.653572 | 1:-78523352 | MsG0180004471.01.T01:three_prime_UTR |
AGTGGTCACTCTGGTGATGG+CGG | 0.666560 | 1:-78523478 | MsG0180004471.01.T01:CDS |
CTGTTGAGCATACATAAGAG+AGG | 0.666776 | 1:+78523717 | None:intergenic |
TCAAGTGGAATGATGCAGCA+GGG | 0.669197 | 1:-78523805 | MsG0180004471.01.T01:CDS |
CAACTCGGTATGAATTCGAG+TGG | 0.681006 | 1:-78523667 | MsG0180004471.01.T01:CDS |
GGAAGTGCTGATGGCCGCGG+TGG | 0.694316 | 1:-78523508 | MsG0180004471.01.T01:CDS |
AGTGGAATGATGCAGCAGGG+AGG | 0.729356 | 1:-78523802 | MsG0180004471.01.T01:CDS |
GACCACTAGAGCTTCCACCG+CGG | 0.784566 | 1:+78523494 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAATAAATAGTTAAAAAA+AGG | + | Chr1:78523593-78523612 | None:intergenic | 10.0% |
!!! | TTGTTTTATGTTTAATTAAA+AGG | - | Chr1:78525168-78525187 | MsG0180004471.01.T01:five_prime_UTR | 10.0% |
!! | AAATAATAGTAAAATGTATC+AGG | - | Chr1:78524490-78524509 | MsG0180004471.01.T01:intron | 15.0% |
!! | ATATATACCTAAACAATTAT+TGG | - | Chr1:78524048-78524067 | MsG0180004471.01.T01:intron | 15.0% |
!!! | TTTATTTTATTAAGGTTTGT+GGG | + | Chr1:78523831-78523850 | None:intergenic | 15.0% |
!! | AAACATATTCATATGTACAA+GGG | + | Chr1:78524418-78524437 | None:intergenic | 20.0% |
!! | GTATTAATTATGTGTACATT+TGG | - | Chr1:78524465-78524484 | MsG0180004471.01.T01:intron | 20.0% |
!! | GTGAAAAATGAAAATTAGAA+AGG | + | Chr1:78524324-78524343 | None:intergenic | 20.0% |
!! | TAAACATATTCATATGTACA+AGG | + | Chr1:78524419-78524438 | None:intergenic | 20.0% |
!!! | CTTTATTTTATTAAGGTTTG+TGG | + | Chr1:78523832-78523851 | None:intergenic | 20.0% |
!!! | TTATTTTATTAAGGTTTGTG+GGG | + | Chr1:78523830-78523849 | None:intergenic | 20.0% |
!!! | TTTACTAGTATTAGCTTTTT+TGG | - | Chr1:78523967-78523986 | MsG0180004471.01.T01:intron | 20.0% |
! | ATTAATACTACTAAGCATCA+TGG | + | Chr1:78524453-78524472 | None:intergenic | 25.0% |
! | GAAAATTAGAAAGGAAACTA+GGG | + | Chr1:78524315-78524334 | None:intergenic | 25.0% |
! | TATAGCACCAATAATTGTTT+AGG | + | Chr1:78524058-78524077 | None:intergenic | 25.0% |
! | TGAAAATTAGAAAGGAAACT+AGG | + | Chr1:78524316-78524335 | None:intergenic | 25.0% |
!! | AACACAAATTTCTTCTAAAG+AGG | - | Chr1:78524540-78524559 | MsG0180004471.01.T01:intron | 25.0% |
!! | AACATTCTGAAAATAGATAG+GGG | + | Chr1:78524178-78524197 | None:intergenic | 25.0% |
!! | ACAACATTCTGAAAATAGAT+AGG | + | Chr1:78524180-78524199 | None:intergenic | 25.0% |
!! | ACACAAATTTCTTCTAAAGA+GGG | - | Chr1:78524541-78524560 | MsG0180004471.01.T01:intron | 25.0% |
!! | CAACATTCTGAAAATAGATA+GGG | + | Chr1:78524179-78524198 | None:intergenic | 25.0% |
!! | CTAAAATGTTACAACCTTTT+TGG | - | Chr1:78523913-78523932 | MsG0180004471.01.T01:intron | 25.0% |
!!! | ATTATTGGTGCTATAATTTC+AGG | - | Chr1:78524063-78524082 | MsG0180004471.01.T01:intron | 25.0% |
AAAACATCTAGACACACAAT+AGG | + | Chr1:78524388-78524407 | None:intergenic | 30.0% | |
ACAAATCAATCATTGTTGTG+AGG | + | Chr1:78524234-78524253 | None:intergenic | 30.0% | |
ACATAATAAGAGCTAGAGTT+TGG | + | Chr1:78524292-78524311 | None:intergenic | 30.0% | |
ACATTAAGTTAAGTAGCTGA+AGG | - | Chr1:78525107-78525126 | MsG0180004471.01.T01:five_prime_UTR | 30.0% | |
AGATCAAAATTCTGCTTACT+TGG | - | Chr1:78524011-78524030 | MsG0180004471.01.T01:intron | 30.0% | |
AGTTACTAGTACACAAACAT+AGG | + | Chr1:78525214-78525233 | None:intergenic | 30.0% | |
ATAATTTCAGGAACCAATCA+AGG | - | Chr1:78524075-78524094 | MsG0180004471.01.T01:intron | 30.0% | |
CAATGGTAATATTATGAGGT+GGG | + | Chr1:78523156-78523175 | None:intergenic | 30.0% | |
CCAATGGAATTGAAACAAAA+AGG | + | Chr1:78523496-78523515 | None:intergenic | 30.0% | |
CTAAGTTCAAATCCAAACAA+AGG | + | Chr1:78523342-78523361 | None:intergenic | 30.0% | |
GATGACACAACAACAATTAA+TGG | - | Chr1:78524710-78524729 | MsG0180004471.01.T01:intron | 30.0% | |
GGGTTTATATTTAGACACAT+AGG | - | Chr1:78524561-78524580 | MsG0180004471.01.T01:intron | 30.0% | |
TGGTAAAACTAATTAGTTCC+TGG | - | Chr1:78525055-78525074 | MsG0180004471.01.T01:CDS | 30.0% | |
TTCAACAATCTTGAGAATCA+AGG | + | Chr1:78523655-78523674 | None:intergenic | 30.0% | |
! | ATTACTGCTATTTGACCATT+TGG | - | Chr1:78524597-78524616 | MsG0180004471.01.T01:intron | 30.0% |
! | TATGCTCTTGTGTAAAGTTT+TGG | - | Chr1:78525247-78525266 | MsG0180004471.01.T01:five_prime_UTR | 30.0% |
!! | ACCAGAAGATTTTAGGTAAA+GGG | + | Chr1:78525012-78525031 | None:intergenic | 30.0% |
!! | CCTTTTTGTTTCAATTCCAT+TGG | - | Chr1:78523493-78523512 | MsG0180004471.01.T01:CDS | 30.0% |
!!! | ACTAGTATTAGCTTTTTTGG+TGG | - | Chr1:78523970-78523989 | MsG0180004471.01.T01:intron | 30.0% |
!!! | CTAGTATTAGCTTTTTTGGT+GGG | - | Chr1:78523971-78523990 | MsG0180004471.01.T01:intron | 30.0% |
!!! | GTCATCATGTTTTGAAACTT+TGG | + | Chr1:78523887-78523906 | None:intergenic | 30.0% |
!!! | TAGTATTAGCTTTTTTGGTG+GGG | - | Chr1:78523972-78523991 | MsG0180004471.01.T01:intron | 30.0% |
!!! | TGTCACTTTCTATATTTTGC+AGG | - | Chr1:78523773-78523792 | MsG0180004471.01.T01:CDS | 30.0% |
AAGAGCTAGAGTTTGGTAAA+TGG | + | Chr1:78524285-78524304 | None:intergenic | 35.0% | |
AATGAGGTTGCTCAATTTCA+AGG | - | Chr1:78525276-78525295 | MsG0180004471.01.T01:five_prime_UTR | 35.0% | |
ACCCTTTACCTAAAATCTTC+TGG | - | Chr1:78525008-78525027 | MsG0180004471.01.T01:intron | 35.0% | |
ACCTAAAATCTTCTGGTGAT+GGG | - | Chr1:78525015-78525034 | MsG0180004471.01.T01:CDS | 35.0% | |
AGGAGAAGAAGAAGAAAGAA+AGG | + | Chr1:78523476-78523495 | None:intergenic | 35.0% | |
ATGTCATTCAGAAGATTGTG+AGG | + | Chr1:78524623-78524642 | None:intergenic | 35.0% | |
CACTACTGATCATATTCAAC+AGG | - | Chr1:78523448-78523467 | MsG0180004471.01.T01:CDS | 35.0% | |
CCTAATCCTCCTAACTAAAA+AGG | + | Chr1:78525081-78525100 | None:intergenic | 35.0% | |
GAGGCAATGGTAATATTATG+AGG | + | Chr1:78523160-78523179 | None:intergenic | 35.0% | |
GCAATGGTAATATTATGAGG+TGG | + | Chr1:78523157-78523176 | None:intergenic | 35.0% | |
GGGAATTAGTTAAGCAAGAA+TGG | - | Chr1:78525035-78525054 | MsG0180004471.01.T01:CDS | 35.0% | |
TACCTAAAATCTTCTGGTGA+TGG | - | Chr1:78525014-78525033 | MsG0180004471.01.T01:CDS | 35.0% | |
TTCACATGTTGCATAGTGAA+GGG | - | Chr1:78524826-78524845 | MsG0180004471.01.T01:CDS | 35.0% | |
! | AATTGAGCAACCTCATTTTC+TGG | + | Chr1:78525273-78525292 | None:intergenic | 35.0% |
! | AGAAGAGTGGTTTTTCTTTG+AGG | + | Chr1:78523191-78523210 | None:intergenic | 35.0% |
!! | AAAGTTTTGGCCAGAAAATG+AGG | - | Chr1:78525260-78525279 | MsG0180004471.01.T01:five_prime_UTR | 35.0% |
!! | CACCAGAAGATTTTAGGTAA+AGG | + | Chr1:78525013-78525032 | None:intergenic | 35.0% |
!!! | AGTATTAGCTTTTTTGGTGG+GGG | - | Chr1:78523973-78523992 | MsG0180004471.01.T01:intron | 35.0% |
!!! | CCTTTTTAGTTAGGAGGATT+AGG | - | Chr1:78525078-78525097 | MsG0180004471.01.T01:exon | 35.0% |
!!! | TTTTTCTAAGATGTGGGAGT+GGG | - | Chr1:78523797-78523816 | MsG0180004471.01.T01:CDS | 35.0% |
AACAGAGAAACAGAAGAGTC+TGG | + | Chr1:78523274-78523293 | None:intergenic | 40.0% | |
ATGAATTCGAGTGGAAGTCA+AGG | - | Chr1:78524801-78524820 | MsG0180004471.01.T01:CDS | 40.0% | |
ATTGTTGAAAGCCAGAACTC+TGG | - | Chr1:78523666-78523685 | MsG0180004471.01.T01:CDS | 40.0% | |
CTACACAACACTTAGAAGAG+TGG | + | Chr1:78523204-78523223 | None:intergenic | 40.0% | |
CTGTTGAGCATACATAAGAG+AGG | + | Chr1:78524745-78524764 | None:intergenic | 40.0% | |
CTTCACATGTTGCATAGTGA+AGG | - | Chr1:78524825-78524844 | MsG0180004471.01.T01:CDS | 40.0% | |
CTTCACTATGCAACATGTGA+AGG | + | Chr1:78524827-78524846 | None:intergenic | 40.0% | |
GTTAGTACAAGTGACCACTT+AGG | - | Chr1:78524198-78524217 | MsG0180004471.01.T01:intron | 40.0% | |
GTTTCTTTCTGCTCTTGTTC+AGG | - | Chr1:78523301-78523320 | MsG0180004471.01.T01:three_prime_UTR | 40.0% | |
TACAAGTGACCACTTAGGAA+GGG | - | Chr1:78524203-78524222 | MsG0180004471.01.T01:intron | 40.0% | |
TCAAGATGCTGTTGCCAAAA+AGG | + | Chr1:78523930-78523949 | None:intergenic | 40.0% | |
TCACATGTTGCATAGTGAAG+GGG | - | Chr1:78524827-78524846 | MsG0180004471.01.T01:CDS | 40.0% | |
TGATCAGTAGTGACGTTGTT+AGG | + | Chr1:78523440-78523459 | None:intergenic | 40.0% | |
! | AAAATAGATAGGGGTGTACC+TGG | + | Chr1:78524169-78524188 | None:intergenic | 40.0% |
! | ACTGGAGGTTTTCCTGATTT+TGG | - | Chr1:78524879-78524898 | MsG0180004471.01.T01:intron | 40.0% |
! | TCCCATCACCAGAAGATTTT+AGG | + | Chr1:78525019-78525038 | None:intergenic | 40.0% |
!! | AATTCATCGTTAGGTACTGG+AGG | - | Chr1:78524864-78524883 | MsG0180004471.01.T01:intron | 40.0% |
!! | AGAGTGGTTTTTCTTTGAGG+CGG | + | Chr1:78523188-78523207 | None:intergenic | 40.0% |
!! | AGCAGAGAAAGAGTATCCAA+TGG | + | Chr1:78523512-78523531 | None:intergenic | 40.0% |
!!! | AGTTCCTGGCCTTTTTAGTT+AGG | - | Chr1:78525069-78525088 | MsG0180004471.01.T01:CDS | 40.0% |
!!! | CTTTTTCTAAGATGTGGGAG+TGG | - | Chr1:78523796-78523815 | MsG0180004471.01.T01:CDS | 40.0% |
!!! | GCAGGCTTTTTCTAAGATGT+GGG | - | Chr1:78523791-78523810 | MsG0180004471.01.T01:CDS | 40.0% |
!!! | TGCAGGCTTTTTCTAAGATG+TGG | - | Chr1:78523790-78523809 | MsG0180004471.01.T01:CDS | 40.0% |
ACAAGTGACCACTTAGGAAG+GGG | - | Chr1:78524204-78524223 | MsG0180004471.01.T01:intron | 45.0% | |
ACATTGCAGTACCCTTCAAG+TGG | - | Chr1:78524639-78524658 | MsG0180004471.01.T01:intron | 45.0% | |
AGGATAGTAAGCTGCCATCA+TGG | + | Chr1:78523420-78523439 | None:intergenic | 45.0% | |
CAACTCGGTATGAATTCGAG+TGG | - | Chr1:78524792-78524811 | MsG0180004471.01.T01:CDS | 45.0% | |
CACTCGAATTCATACCGAGT+TGG | + | Chr1:78524794-78524813 | None:intergenic | 45.0% | |
CAGAAGATTGTGAGGCCAAA+TGG | + | Chr1:78524615-78524634 | None:intergenic | 45.0% | |
CTGTTCTTACTCAGCACACT+CGG | + | Chr1:78523700-78523719 | None:intergenic | 45.0% | |
GAGAATCAGCTATTGCAGCT+AGG | + | Chr1:78524121-78524140 | None:intergenic | 45.0% | |
GATTTCTCTGCAGCCTTGAT+TGG | + | Chr1:78524091-78524110 | None:intergenic | 45.0% | |
GCTGCATCATTCCACTTGAA+GGG | + | Chr1:78524653-78524672 | None:intergenic | 45.0% | |
GGATAGTAAGCTGCCATCAT+GGG | + | Chr1:78523419-78523438 | None:intergenic | 45.0% | |
GGCAATTCATCGTTAGGTAC+TGG | - | Chr1:78524861-78524880 | MsG0180004471.01.T01:intron | 45.0% | |
GTACAAGTGACCACTTAGGA+AGG | - | Chr1:78524202-78524221 | MsG0180004471.01.T01:intron | 45.0% | |
GTTGGAGGCAATTCATCGTT+AGG | - | Chr1:78524855-78524874 | MsG0180004471.01.T01:intron | 45.0% | |
TCAAGTGGAATGATGCAGCA+GGG | - | Chr1:78524654-78524673 | MsG0180004471.01.T01:intron | 45.0% | |
TCCTCCTAACTAAAAAGGCC+AGG | + | Chr1:78525076-78525095 | None:intergenic | 45.0% | |
TGCTGCATCATTCCACTTGA+AGG | + | Chr1:78524654-78524673 | None:intergenic | 45.0% | |
TTCAAGTGGAATGATGCAGC+AGG | - | Chr1:78524653-78524672 | MsG0180004471.01.T01:intron | 45.0% | |
!! | CAAGACATTGGAAGTGCTGA+TGG | - | Chr1:78524942-78524961 | MsG0180004471.01.T01:intron | 45.0% |
!! | TCCTGATTTTGGTCGTAGCT+CGG | - | Chr1:78524890-78524909 | MsG0180004471.01.T01:intron | 45.0% |
!! | TTTCTTTGAGGCGGCTAAAG+AGG | + | Chr1:78523179-78523198 | None:intergenic | 45.0% |
!!! | ATTAGCTTTTTTGGTGGGGG+AGG | - | Chr1:78523976-78523995 | MsG0180004471.01.T01:intron | 45.0% |
!!! | TCCTGGCCTTTTTAGTTAGG+AGG | - | Chr1:78525072-78525091 | MsG0180004471.01.T01:CDS | 45.0% |
!!! | TTAGCTTTTTTGGTGGGGGA+GGG | - | Chr1:78523977-78523996 | MsG0180004471.01.T01:intron | 45.0% |
!! | AAAATAAATAGTTAAAAAAA+GGG | + | Chr1:78523592-78523611 | None:intergenic | 5.0% |
!!! | AAAAAAACTTTATTTTATTA+AGG | + | Chr1:78523839-78523858 | None:intergenic | 5.0% |
!!! | TTTGAAATAAAATTTATTTT+TGG | - | Chr1:78524516-78524535 | MsG0180004471.01.T01:intron | 5.0% |
CAAGCCTTGCAAAGCCAACT+CGG | - | Chr1:78524777-78524796 | MsG0180004471.01.T01:CDS | 50.0% | |
CAGGGTCACACACCTTTGTT+TGG | - | Chr1:78523327-78523346 | MsG0180004471.01.T01:three_prime_UTR | 50.0% | |
CATAGTGAAGGGGCTAACGT+TGG | - | Chr1:78524837-78524856 | MsG0180004471.01.T01:intron | 50.0% | |
CTGCTCTTGTTCAGGTCACA+GGG | - | Chr1:78523309-78523328 | MsG0180004471.01.T01:three_prime_UTR | 50.0% | |
TCTAGTGGTCACTCTGGTGA+TGG | - | Chr1:78524978-78524997 | MsG0180004471.01.T01:intron | 50.0% | |
TCTGCTCTTGTTCAGGTCAC+AGG | - | Chr1:78523308-78523327 | MsG0180004471.01.T01:three_prime_UTR | 50.0% | |
! | GGTAGTGGCAAGCAAGACAT+TGG | - | Chr1:78524930-78524949 | MsG0180004471.01.T01:intron | 50.0% |
!! | CATACCGAGTTGGCTTTGCA+AGG | + | Chr1:78524784-78524803 | None:intergenic | 50.0% |
AGTGAAGGGGCTAACGTTGG+AGG | - | Chr1:78524840-78524859 | MsG0180004471.01.T01:intron | 55.0% | |
AGTGGAATGATGCAGCAGGG+AGG | - | Chr1:78524657-78524676 | MsG0180004471.01.T01:intron | 55.0% | |
CCAGGCATAGTAGGTGGTTG+GGG | + | Chr1:78524146-78524165 | None:intergenic | 55.0% | |
GAGGTGAACCCCTTCCTAAG+TGG | + | Chr1:78524215-78524234 | None:intergenic | 55.0% | |
GATGCAGATGCAGCCCATGA+TGG | - | Chr1:78523403-78523422 | MsG0180004471.01.T01:three_prime_UTR | 55.0% | |
GCCAGGCATAGTAGGTGGTT+GGG | + | Chr1:78524147-78524166 | None:intergenic | 55.0% | |
GCCGAGCTACGACCAAAATC+AGG | + | Chr1:78524894-78524913 | None:intergenic | 55.0% | |
TGAGGCGGCTAAAGAGGCAA+TGG | + | Chr1:78523173-78523192 | None:intergenic | 55.0% | |
TGTACCTGGCCAGGCATAGT+AGG | + | Chr1:78524155-78524174 | None:intergenic | 55.0% | |
! | GGAAGCTCTAGTGGTCACTC+TGG | - | Chr1:78524972-78524991 | MsG0180004471.01.T01:intron | 55.0% |
! | GGTGATGGTTTGCACGGTAG+TGG | - | Chr1:78524915-78524934 | MsG0180004471.01.T01:intron | 55.0% |
! | TCATGGGCTGCATCTGCATC+AGG | + | Chr1:78523403-78523422 | None:intergenic | 55.0% |
!! | AGTGGTCACTCTGGTGATGG+CGG | - | Chr1:78524981-78525000 | MsG0180004471.01.T01:intron | 55.0% |
!! | ATTGGAAGTGCTGATGGCCG+CGG | - | Chr1:78524948-78524967 | MsG0180004471.01.T01:intron | 55.0% |
!! | GATTTTGGTCGTAGCTCGGC+TGG | - | Chr1:78524894-78524913 | MsG0180004471.01.T01:intron | 55.0% |
!! | TCGGCTGGTGATGGTTTGCA+CGG | - | Chr1:78524909-78524928 | MsG0180004471.01.T01:intron | 55.0% |
ACCACCTACTATGCCTGGCC+AGG | - | Chr1:78524148-78524167 | MsG0180004471.01.T01:intron | 60.0% | |
ACCTGGCCAGGCATAGTAGG+TGG | + | Chr1:78524152-78524171 | None:intergenic | 60.0% | |
CCCCAACCACCTACTATGCC+TGG | - | Chr1:78524143-78524162 | MsG0180004471.01.T01:intron | 60.0% | |
CGGTGAGCTTGCCAGAGTTC+TGG | + | Chr1:78523680-78523699 | None:intergenic | 60.0% | |
GACCACTAGAGCTTCCACCG+CGG | + | Chr1:78524968-78524987 | None:intergenic | 60.0% | |
GCAGGGAGGACACTACATGC+AGG | - | Chr1:78524671-78524690 | MsG0180004471.01.T01:intron | 60.0% | |
GGCCAGGCATAGTAGGTGGT+TGG | + | Chr1:78524148-78524167 | None:intergenic | 60.0% | |
! | AGATAGGGGTGTACCTGGCC+AGG | + | Chr1:78524164-78524183 | None:intergenic | 60.0% |
!!! | GCTTTTTTGGTGGGGGAGGG+AGG | - | Chr1:78523980-78523999 | MsG0180004471.01.T01:intron | 60.0% |
GGTCGTAGCTCGGCTGGTGA+TGG | - | Chr1:78524900-78524919 | MsG0180004471.01.T01:intron | 65.0% | |
! | GGCCGCGGTGGAAGCTCTAG+TGG | - | Chr1:78524963-78524982 | MsG0180004471.01.T01:intron | 70.0% |
!! | GGAAGTGCTGATGGCCGCGG+TGG | - | Chr1:78524951-78524970 | MsG0180004471.01.T01:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 78523152 | 78525329 | 78523152 | ID=MsG0180004471.01;Name=MsG0180004471.01 |
Chr1 | mRNA | 78523152 | 78525329 | 78523152 | ID=MsG0180004471.01.T01;Parent=MsG0180004471.01;Name=MsG0180004471.01.T01;_AED=0.47;_eAED=0.47;_QI=237|1|1|1|0.66|0.75|4|286|212 |
Chr1 | exon | 78523152 | 78523833 | 78523152 | ID=MsG0180004471.01.T01:exon:45425;Parent=MsG0180004471.01.T01 |
Chr1 | exon | 78524312 | 78524396 | 78524312 | ID=MsG0180004471.01.T01:exon:45424;Parent=MsG0180004471.01.T01 |
Chr1 | exon | 78524772 | 78524848 | 78524772 | ID=MsG0180004471.01.T01:exon:45423;Parent=MsG0180004471.01.T01 |
Chr1 | exon | 78525012 | 78525329 | 78525012 | ID=MsG0180004471.01.T01:exon:45422;Parent=MsG0180004471.01.T01 |
Chr1 | five_prime_UTR | 78525093 | 78525329 | 78525093 | ID=MsG0180004471.01.T01:five_prime_utr;Parent=MsG0180004471.01.T01 |
Chr1 | CDS | 78525012 | 78525092 | 78525012 | ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01 |
Chr1 | CDS | 78524772 | 78524848 | 78524772 | ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01 |
Chr1 | CDS | 78524312 | 78524396 | 78524312 | ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01 |
Chr1 | CDS | 78523438 | 78523833 | 78523438 | ID=MsG0180004471.01.T01:cds;Parent=MsG0180004471.01.T01 |
Chr1 | three_prime_UTR | 78523152 | 78523437 | 78523152 | ID=MsG0180004471.01.T01:three_prime_utr;Parent=MsG0180004471.01.T01 |
Gene Sequence |
Protein sequence |