AlfalfaGEDB | MsG0380017440.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017440.01

KEGG: -
GO: -
PFAM: PF00641

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017440.01.T01	PNY09071.1	83.562	146	19	2	1	146	1	141	9.39E-79	241

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017440.01.T01	A0A072V277	96.992	133	3	1	1	133	1	132	8.02e-77	236

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0380017440.01	0.859760	3.308713e-63	8.836174e-60
MsG0080048258.01	MsG0380017440.01	0.825194	5.354152e-54	4.846712e-51
MsG0180000111.01	MsG0380017440.01	0.845041	5.200991e-59	8.558446e-56
MsG0180000817.01	MsG0380017440.01	0.803537	3.325621e-49	1.675513e-46
MsG0180002211.01	MsG0380017440.01	0.812826	3.486564e-51	2.239420e-48
MsG0180002583.01	MsG0380017440.01	0.802240	6.162580e-49	3.003534e-46
MsG0180003360.01	MsG0380017440.01	0.800043	1.733840e-48	7.992690e-46
MsG0180003485.01	MsG0380017440.01	0.878937	1.874465e-69	9.971771e-66
MsG0180004471.01	MsG0380017440.01	0.802354	5.837110e-49	2.853346e-46
MsG0180004538.01	MsG0380017440.01	0.813387	2.626563e-51	1.712947e-48
MsG0180004583.01	MsG0380017440.01	0.840602	7.877215e-58	1.127720e-54
MsG0180004661.01	MsG0380017440.01	0.805800	1.120603e-49	5.984112e-47
MsG0180004835.01	MsG0380017440.01	0.841874	3.645319e-58	5.429825e-55
MsG0180005048.01	MsG0380017440.01	0.825765	3.921231e-54	3.607713e-51
MsG0180006133.01	MsG0380017440.01	0.833598	4.865696e-56	5.630126e-53
MsG0380012956.01	MsG0380017440.01	0.842513	2.469563e-58	3.753399e-55
MsG0380014542.01	MsG0380017440.01	0.817317	3.511933e-52	2.549004e-49
MsG0380014594.01	MsG0380017440.01	0.809818	1.567488e-50	9.296670e-48
MsG0380014666.01	MsG0380017440.01	0.822016	2.968155e-53	2.454424e-50
MsG0380015090.01	MsG0380017440.01	0.843354	1.475044e-58	2.301908e-55
MsG0380015161.01	MsG0380017440.01	0.815017	1.146664e-51	7.815194e-49
MsG0380015340.01	MsG0380017440.01	0.807595	4.680542e-50	2.617524e-47
MsG0380015394.01	MsG0380017440.01	0.811583	6.510441e-51	4.045394e-48
MsG0380015825.01	MsG0380017440.01	0.845402	4.153687e-59	6.913955e-56
MsG0380016027.01	MsG0380017440.01	0.850373	1.771149e-60	3.461967e-57
MsG0380016225.01	MsG0380017440.01	0.809687	1.672735e-50	9.886579e-48
MsG0380017150.01	MsG0380017440.01	0.838719	2.433527e-57	3.287656e-54
MsG0380017164.01	MsG0380017440.01	0.819091	1.393088e-52	1.061761e-49
MsG0380017282.01	MsG0380017440.01	0.850544	1.585359e-60	3.116133e-57
MsG0380017440.01	MsG0380017605.01	0.802462	5.546011e-49	2.718402e-46
MsG0380017440.01	MsG0380017632.01	0.811558	6.592538e-51	4.093791e-48
MsG0380017440.01	MsG0380018055.01	0.811290	7.537357e-51	4.647308e-48
MsG0380017440.01	MsG0480018106.01	0.811435	7.012479e-51	4.340504e-48
MsG0380017440.01	MsG0480018785.01	0.854405	1.258385e-61	2.807113e-58
MsG0380017440.01	MsG0480019699.01	0.804583	2.014566e-49	1.042613e-46
MsG0380017440.01	MsG0480020926.01	0.805769	1.137806e-49	6.071249e-47
MsG0380017440.01	MsG0480021100.01	0.812992	3.206018e-51	2.068496e-48
MsG0380017440.01	MsG0480021301.01	0.810978	8.808234e-51	5.387192e-48
MsG0380017440.01	MsG0480021449.01	0.863530	2.331190e-64	7.089655e-61
MsG0380017440.01	MsG0480021454.01	0.851077	1.122642e-60	2.245554e-57
MsG0380017440.01	MsG0480021456.01	0.853536	2.240244e-61	4.856393e-58
MsG0380017440.01	MsG0480021773.01	0.824595	7.411349e-54	6.595262e-51
MsG0380017440.01	MsG0480021902.01	0.833634	4.764142e-56	5.518506e-53
MsG0380017440.01	MsG0480022307.01	0.815943	7.132984e-52	4.986199e-49
MsG0380017440.01	MsG0480022378.01	0.836299	1.015322e-56	1.274396e-53
MsG0380017440.01	MsG0480022784.01	0.835817	1.345271e-56	1.663815e-53
MsG0380017440.01	MsG0480022873.01	0.801328	9.482279e-49	4.515914e-46
MsG0380017440.01	MsG0480022991.01	0.816445	5.511350e-52	3.905698e-49
MsG0380017440.01	MsG0480022998.01	0.814005	1.920408e-51	1.273535e-48
MsG0380017440.01	MsG0480023003.01	0.847514	1.101884e-59	1.963423e-56
MsG0380017440.01	MsG0480023426.01	0.817634	2.979110e-52	2.181169e-49
MsG0380017440.01	MsG0480023532.01	0.812960	3.258392e-51	2.100350e-48
MsG0380017440.01	MsG0580024060.01	0.819574	1.081270e-52	8.352772e-50
MsG0380017440.01	MsG0580024276.01	0.813579	2.382615e-51	1.561956e-48
MsG0380017440.01	MsG0580024748.01	0.844657	6.600707e-59	1.072954e-55
MsG0380017440.01	MsG0580024787.01	0.818906	1.535016e-52	1.164060e-49
MsG0380017440.01	MsG0580025186.01	0.825082	5.689643e-54	5.134027e-51
MsG0380017440.01	MsG0580025504.01	0.808679	2.751193e-50	1.582940e-47
MsG0380017440.01	MsG0580025506.01	0.820140	8.026275e-53	6.299144e-50
MsG0380017440.01	MsG0580025775.01	0.812399	4.324435e-51	2.746816e-48
MsG0380017440.01	MsG0580028923.01	0.835607	1.520593e-56	1.868836e-53
MsG0380017440.01	MsG0580028955.01	0.835136	2.000437e-56	2.423954e-53
MsG0380017440.01	MsG0580029102.01	0.800712	1.267389e-48	5.942165e-46
MsG0380017440.01	MsG0580029591.01	0.814479	1.509042e-51	1.013712e-48
MsG0380017440.01	MsG0680035792.01	0.853095	2.997223e-61	6.401612e-58
MsG0380017440.01	MsG0780036534.01	0.808299	3.315754e-50	1.888977e-47
MsG0380017440.01	MsG0780037741.01	0.809139	2.192726e-50	1.277238e-47
MsG0380017440.01	MsG0780038402.01	0.803719	3.047800e-49	1.542670e-46
MsG0380017440.01	MsG0780038736.01	0.830025	3.704689e-55	3.856713e-52
MsG0380017440.01	MsG0780039861.01	0.858510	7.838324e-63	2.005385e-59
MsG0380017440.01	MsG0780039878.01	0.823613	1.260565e-53	1.090779e-50
MsG0380017440.01	MsG0780040533.01	0.804987	1.658841e-49	8.675161e-47
MsG0380017440.01	MsG0780040620.01	0.859181	4.939894e-63	1.293127e-59
MsG0380017440.01	MsG0780040641.01	0.839212	1.813155e-57	2.486716e-54
MsG0380017440.01	MsG0780041008.01	0.842156	3.070468e-58	4.614268e-55
MsG0380017440.01	MsG0780041063.01	0.801234	9.912601e-49	4.709742e-46
MsG0380017440.01	MsG0780041273.01	0.829983	3.793738e-55	3.944874e-52
MsG0380017440.01	MsG0780041359.01	0.846033	2.800661e-59	4.757954e-56
MsG0380017440.01	MsG0780041820.01	0.800603	1.333962e-48	6.237276e-46
MsG0380017440.01	MsG0880045612.01	0.819489	1.130479e-52	8.711977e-50
MsG0380017440.01	MsG0880045647.01	0.811225	7.787959e-51	4.793761e-48
MsG0380017440.01	MsG0880046319.01	0.827776	1.297935e-54	1.265347e-51
MsG0380017440.01	MsG0880046529.01	0.862871	3.727119e-64	1.108238e-60
MsG0380017440.01	MsG0880046646.01	0.814494	1.496994e-51	1.006054e-48
MsG0380017440.01	MsG0880046904.01	0.814884	1.227259e-51	8.334102e-49
MsG0380017440.01	MsG0880046905.01	0.846276	2.405196e-59	4.117867e-56
MsG0380017440.01	MsG0880046993.01	0.831872	1.304824e-55	1.434496e-52
MsG0380017440.01	MsG0880047649.01	0.848703	5.176989e-60	9.582861e-57
MsG0280006540.01	MsG0380017440.01	0.806910	6.538909e-50	3.592407e-47
MsG0280006563.01	MsG0380017440.01	0.823730	1.183641e-53	1.027754e-50
MsG0280006909.01	MsG0380017440.01	0.808995	2.354944e-50	1.366347e-47
MsG0280009866.01	MsG0380017440.01	0.807943	3.948825e-50	2.228515e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017440.01.T01	MTR_3g107610	96.992	133	3	1	1	133	1	132	2.03e-80	236
MsG0380017440.01.T01	MTR_3g107610	89.726	146	14	1	1	146	1	145	4.00e-80	235
MsG0380017440.01.T01	MTR_4g011190	59.398	133	38	4	1	133	1	117	4.41e-37	125
MsG0380017440.01.T01	MTR_4g113840	39.416	137	40	6	5	133	6	107	2.43e-18	77.4
MsG0380017440.01.T01	MTR_2g054750	36.893	103	46	2	5	106	6	90	9.27e-18	75.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017440.01.T01	AT3G15680	74.468	94	21	2	1	94	1	91	3.93e-42	139
MsG0380017440.01.T01	AT3G15680	74.468	94	21	2	1	94	1	91	3.93e-42	139
MsG0380017440.01.T01	AT5G25490	65.049	103	32	2	1	103	1	99	8.36e-38	128
MsG0380017440.01.T01	AT5G25490	65.049	103	32	2	1	103	1	99	8.36e-38	128
MsG0380017440.01.T01	AT2G26695	38.760	129	51	5	5	133	6	106	6.53e-19	79.0
MsG0380017440.01.T01	AT2G26695	38.760	129	51	5	5	133	6	106	6.53e-19	79.0

Find 69 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCGGCGGCGCCGTTGATTT+TGG	0.178200	3:-96277220	MsG0380017440.01.T01:CDS
TTGAGATCACCATACGGTTT+TGG	0.292602	3:-96276998	MsG0380017440.01.T01:CDS
GGGGAGTCAAGAATGATTTC+TGG	0.322815	3:-96277244	MsG0380017440.01.T01:CDS
TTGAGAAGTTCACGATAAAT+AGG	0.332528	3:+96276523	None:intergenic
TCGGTAGCATTCCATTCTAT+TGG	0.379779	3:+96276583	None:intergenic
GGCTCCTTTCTTGGTGGAAG+AGG	0.386495	3:-96277196	MsG0380017440.01.T01:CDS
GAGAAGGTATCAATATCCTT+AGG	0.387497	3:+96277049	None:intergenic
ACTCGCCCCGGCTGGAAATC+CGG	0.405258	3:-96276947	MsG0380017440.01.T01:intron
GTGCCTCCACTCGCCCCGGC+TGG	0.416254	3:-96276955	MsG0380017440.01.T01:CDS
TTATCGTGAACTTCTCAATC+TGG	0.418523	3:-96276518	MsG0380017440.01.T01:CDS
GGGCCGGTGGTGAAAGGAAA+AGG	0.421977	3:+96277163	None:intergenic
CAGTCACCAGGACGGACATC+AGG	0.429559	3:+96277142	None:intergenic
CTGATGTCCGTCCTGGTGAC+TGG	0.431260	3:-96277141	MsG0380017440.01.T01:CDS
AGATGAGCAGACCAGGAGAT+TGG	0.434758	3:-96277324	MsG0380017440.01.T01:CDS
GTCCTGCAGTTCCAATCTCC+TGG	0.444104	3:+96277313	None:intergenic
CTCTTCTTTGAAAGTTGAGG+TGG	0.445847	3:+96277284	None:intergenic
GGCACCACATTTGAAGCAGC+TGG	0.455963	3:+96277072	None:intergenic
GGAGGAGGCAGCGCCGGTGG+TGG	0.457413	3:-96276977	MsG0380017440.01.T01:CDS
TTTGAAGCAGCTGGAGCGGC+TGG	0.457465	3:+96277081	None:intergenic
CGCTCCAGCTGCTTCAAATG+TGG	0.474359	3:-96277076	MsG0380017440.01.T01:CDS
CTTCAAATGTGGTGCCCCTA+AGG	0.478199	3:-96277065	MsG0380017440.01.T01:CDS
CAGTCACCGGATTTCCAGCC+GGG	0.479965	3:+96276941	None:intergenic
AGAGCCTCTTCCACCAAGAA+AGG	0.496788	3:+96277192	None:intergenic
GCATAACTTCGCCAATAGAA+TGG	0.497407	3:-96276594	MsG0380017440.01.T01:CDS
CTTCCAGTACTAGATTCCCT+TGG	0.497781	3:+96276551	None:intergenic
ATTCTCTTCTTTGAAAGTTG+AGG	0.498262	3:+96277281	None:intergenic
TTTGGTGGCTCCTTTCTTGG+TGG	0.500076	3:-96277202	MsG0380017440.01.T01:CDS
AGCAGAAAGATGAGCAGACC+AGG	0.504369	3:-96277331	None:intergenic
CACATTTGAAGCAGCTGGAG+CGG	0.504933	3:+96277077	None:intergenic
GGCCGGTGGTGAAAGGAAAA+GGG	0.509497	3:+96277164	None:intergenic
AGAAGGTATCAATATCCTTA+GGG	0.509984	3:+96277050	None:intergenic
GACCAGGAGATTGGAACTGC+AGG	0.511105	3:-96277315	MsG0380017440.01.T01:CDS
GCTACCGATGCAACGGTCCA+AGG	0.513927	3:-96276568	MsG0380017440.01.T01:CDS
GGATTTCCAGCCGGGGCGAG+TGG	0.514801	3:+96276949	None:intergenic
AGAATGATTTCTGGCGGCGG+CGG	0.516918	3:-96277235	MsG0380017440.01.T01:CDS
GCGAGTGGAGGCACCACCAC+CGG	0.520780	3:+96276964	None:intergenic
GTCTGAGGAGTCAGAGGAGA+AGG	0.523791	3:+96277033	None:intergenic
CCAGTCACCGGATTTCCAGC+CGG	0.530047	3:+96276940	None:intergenic
TTCTTGACTCCCCACATCGT+TGG	0.531867	3:+96277254	None:intergenic
ACCGGCCCTGATGTCCGTCC+TGG	0.532481	3:-96277148	MsG0380017440.01.T01:CDS
GGTCCAAGGGAATCTAGTAC+TGG	0.534715	3:-96276554	MsG0380017440.01.T01:CDS
TTTGGAGGAGGCAGCGCCGG+TGG	0.535377	3:-96276980	MsG0380017440.01.T01:CDS
GAGAATCTTGCCAACGATGT+GGG	0.536610	3:-96277264	MsG0380017440.01.T01:CDS
GGTGACTGGTATTGTACTGT+TGG	0.542639	3:-96277127	MsG0380017440.01.T01:CDS
ACATCAGGGCCGGTGGTGAA+AGG	0.548866	3:+96277157	None:intergenic
ATTCCCTTGGACCGTTGCAT+CGG	0.549976	3:+96276564	None:intergenic
TTTCCAGCCGGGGCGAGTGG+AGG	0.551998	3:+96276952	None:intergenic
CTGCCTCCTCCAAAACCGTA+TGG	0.574316	3:+96276989	None:intergenic
ACCAGGACGGACATCAGGGC+CGG	0.576233	3:+96277147	None:intergenic
AAAGGAGCCACCAAAATCAA+CGG	0.591777	3:+96277210	None:intergenic
CTACCGATGCAACGGTCCAA+GGG	0.596798	3:-96276567	MsG0380017440.01.T01:CDS
GGTGGTGCCTCCACTCGCCC+CGG	0.597153	3:-96276959	MsG0380017440.01.T01:CDS
AGAGAATCTTGCCAACGATG+TGG	0.600788	3:-96277265	MsG0380017440.01.T01:CDS
AGAATCTTGCCAACGATGTG+GGG	0.604150	3:-96277263	MsG0380017440.01.T01:CDS
CAATAATCGTGGCATGTCTG+AGG	0.609735	3:+96277018	None:intergenic
TGGCATGTCTGAGGAGTCAG+AGG	0.612841	3:+96277027	None:intergenic
AGGACGGACATCAGGGCCGG+TGG	0.617823	3:+96277150	None:intergenic
TCAAGAATGATTTCTGGCGG+CGG	0.619694	3:-96277238	MsG0380017440.01.T01:CDS
ATGGAATGCTACCGATGCAA+CGG	0.621720	3:-96276575	MsG0380017440.01.T01:CDS
TATTGTACTGTTGGAAACTG+TGG	0.623871	3:-96277118	MsG0380017440.01.T01:CDS
CGATTATTGAGATCACCATA+CGG	0.625229	3:-96277004	MsG0380017440.01.T01:CDS
AGTCACCAGGACGGACATCA+GGG	0.629819	3:+96277143	None:intergenic
GCCGGTGGTGAAAGGAAAAG+GGG	0.632818	3:+96277165	None:intergenic
ACAGTACAATACCAGTCACC+AGG	0.642353	3:+96277130	None:intergenic
GAGTCAAGAATGATTTCTGG+CGG	0.656995	3:-96277241	MsG0380017440.01.T01:CDS
TACAATACCAGTCACCAGGA+CGG	0.657561	3:+96277134	None:intergenic
TATGGTGATCTCAATAATCG+TGG	0.671531	3:+96277007	None:intergenic
GAAGGTATCAATATCCTTAG+GGG	0.684912	3:+96277051	None:intergenic
AGTCACCGGATTTCCAGCCG+GGG	0.690621	3:+96276942	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATTATAAGTTCCAAATT+AGG	+	Chr3:96276957-96276976	None:intergenic	15.0%
!!	CTAACAAAATCTCATAAAAA+TGG	-	Chr3:96277053-96277072	MsG0380017440.01.T01:CDS	20.0%
!!	GATACTTCTTATAAATATTG+TGG	-	Chr3:96277024-96277043	MsG0380017440.01.T01:CDS	20.0%
!!	TTTCATTTGTCTCATTATAA+GGG	+	Chr3:96277153-96277172	None:intergenic	20.0%
!!!	CATTTTTATGAGATTTTGTT+AGG	+	Chr3:96277055-96277074	None:intergenic	20.0%
!	CTTCTTATAAATATTGTGGT+TGG	-	Chr3:96277028-96277047	MsG0380017440.01.T01:CDS	25.0%
!	GTTTCATTTGTCTCATTATA+AGG	+	Chr3:96277154-96277173	None:intergenic	25.0%
	ACATGACACTTATAATGAGA+CGG	+	Chr3:96276998-96277017	None:intergenic	30.0%
	TTGAGAAGTTCACGATAAAT+AGG	+	Chr3:96277297-96277316	None:intergenic	30.0%
!	ATTCTCTTCTTTGAAAGTTG+AGG	+	Chr3:96276539-96276558	None:intergenic	30.0%
!!	AGAAGGTATCAATATCCTTA+GGG	+	Chr3:96276770-96276789	None:intergenic	30.0%
	AGAATTGAAATGTGTAGGTC+TGG	-	Chr3:96277191-96277210	MsG0380017440.01.T01:CDS	35.0%
	CGATTATTGAGATCACCATA+CGG	-	Chr3:96276813-96276832	MsG0380017440.01.T01:intron	35.0%
	GAAATGATTGACATGAAACC+TGG	+	Chr3:96276910-96276929	None:intergenic	35.0%
	GAATTGAAATGTGTAGGTCT+GGG	-	Chr3:96277192-96277211	MsG0380017440.01.T01:CDS	35.0%
	GACCTACACATTTCAATTCT+CGG	+	Chr3:96277191-96277210	None:intergenic	35.0%
	TACCGAGAATTGAAATGTGT+AGG	-	Chr3:96277186-96277205	MsG0380017440.01.T01:CDS	35.0%
	TATGGTGATCTCAATAATCG+TGG	+	Chr3:96276813-96276832	None:intergenic	35.0%
	TATTGTACTGTTGGAAACTG+TGG	-	Chr3:96276699-96276718	MsG0380017440.01.T01:intron	35.0%
	TTATCGTGAACTTCTCAATC+TGG	-	Chr3:96277299-96277318	MsG0380017440.01.T01:CDS	35.0%
!!	GAAGGTATCAATATCCTTAG+GGG	+	Chr3:96276769-96276788	None:intergenic	35.0%
!!	GAGAAGGTATCAATATCCTT+AGG	+	Chr3:96276771-96276790	None:intergenic	35.0%
	AAAGGAGCCACCAAAATCAA+CGG	+	Chr3:96276610-96276629	None:intergenic	40.0%
	CAAATTAGGACGAAGTAGCA+AGG	+	Chr3:96276943-96276962	None:intergenic	40.0%
	CAATTCTCGGTAATGTCAGT+AGG	+	Chr3:96277178-96277197	None:intergenic	40.0%
	GCATAACTTCGCCAATAGAA+TGG	-	Chr3:96277223-96277242	MsG0380017440.01.T01:CDS	40.0%
	TCGGTAGCATTCCATTCTAT+TGG	+	Chr3:96277237-96277256	None:intergenic	40.0%
!	CTCTTCTTTGAAAGTTGAGG+TGG	+	Chr3:96276536-96276555	None:intergenic	40.0%
!	CTTGCTACTTCGTCCTAATT+TGG	-	Chr3:96276941-96276960	MsG0380017440.01.T01:intron	40.0%
!	GAGTCAAGAATGATTTCTGG+CGG	-	Chr3:96276576-96276595	MsG0380017440.01.T01:CDS	40.0%
!	TTGAGATCACCATACGGTTT+TGG	-	Chr3:96276819-96276838	MsG0380017440.01.T01:intron	40.0%
	ACAGTACAATACCAGTCACC+AGG	+	Chr3:96276690-96276709	None:intergenic	45.0%
	AGAATCTTGCCAACGATGTG+GGG	-	Chr3:96276554-96276573	MsG0380017440.01.T01:CDS	45.0%
	AGAGAATCTTGCCAACGATG+TGG	-	Chr3:96276552-96276571	MsG0380017440.01.T01:CDS	45.0%
	ATGGAATGCTACCGATGCAA+CGG	-	Chr3:96277242-96277261	MsG0380017440.01.T01:CDS	45.0%
	CAATAATCGTGGCATGTCTG+AGG	+	Chr3:96276802-96276821	None:intergenic	45.0%
	CTTCCAGTACTAGATTCCCT+TGG	+	Chr3:96277269-96277288	None:intergenic	45.0%
	GAGAATCTTGCCAACGATGT+GGG	-	Chr3:96276553-96276572	MsG0380017440.01.T01:CDS	45.0%
	GGGGAGTCAAGAATGATTTC+TGG	-	Chr3:96276573-96276592	MsG0380017440.01.T01:CDS	45.0%
	GGTGACTGGTATTGTACTGT+TGG	-	Chr3:96276690-96276709	MsG0380017440.01.T01:intron	45.0%
	TACAATACCAGTCACCAGGA+CGG	+	Chr3:96276686-96276705	None:intergenic	45.0%
!!	AGATCACCATACGGTTTTGG+AGG	-	Chr3:96276822-96276841	MsG0380017440.01.T01:intron	45.0%
!!	GATTTTGGTGGCTCCTTTCT+TGG	-	Chr3:96276612-96276631	MsG0380017440.01.T01:CDS	45.0%
!!	TCAAGAATGATTTCTGGCGG+CGG	-	Chr3:96276579-96276598	MsG0380017440.01.T01:CDS	45.0%
	AGAGCCTCTTCCACCAAGAA+AGG	+	Chr3:96276628-96276647	None:intergenic	50.0%
	ATTCCCTTGGACCGTTGCAT+CGG	+	Chr3:96277256-96277275	None:intergenic	50.0%
	CTTCAAATGTGGTGCCCCTA+AGG	-	Chr3:96276752-96276771	MsG0380017440.01.T01:intron	50.0%
	GGTCCAAGGGAATCTAGTAC+TGG	-	Chr3:96277263-96277282	MsG0380017440.01.T01:CDS	50.0%
	TTCTTGACTCCCCACATCGT+TGG	+	Chr3:96276566-96276585	None:intergenic	50.0%
!	CACATTTGAAGCAGCTGGAG+CGG	+	Chr3:96276743-96276762	None:intergenic	50.0%
!	TCCCCTTTTCCTTTCACCAC+CGG	-	Chr3:96276651-96276670	MsG0380017440.01.T01:intron	50.0%
!	TTTGGTGGCTCCTTTCTTGG+TGG	-	Chr3:96276615-96276634	MsG0380017440.01.T01:intron	50.0%
!!!	TCACCATACGGTTTTGGAGG+AGG	-	Chr3:96276825-96276844	MsG0380017440.01.T01:intron	50.0%
	AGTCACCAGGACGGACATCA+GGG	+	Chr3:96276677-96276696	None:intergenic	55.0%
	CCTGGTGCATATCCAGTCAC+CGG	+	Chr3:96276892-96276911	None:intergenic	55.0%
	CGCTCCAGCTGCTTCAAATG+TGG	-	Chr3:96276741-96276760	MsG0380017440.01.T01:intron	55.0%
	CTACCGATGCAACGGTCCAA+GGG	-	Chr3:96277250-96277269	MsG0380017440.01.T01:CDS	55.0%
	CTGCCTCCTCCAAAACCGTA+TGG	+	Chr3:96276831-96276850	None:intergenic	55.0%
	GACCAGGAGATTGGAACTGC+AGG	-	Chr3:96276502-96276521	MsG0380017440.01.T01:CDS	55.0%
	GCCGGTGGTGAAAGGAAAAG+GGG	+	Chr3:96276655-96276674	None:intergenic	55.0%
	GGCCGGTGGTGAAAGGAAAA+GGG	+	Chr3:96276656-96276675	None:intergenic	55.0%
	GGCTCCTTTCTTGGTGGAAG+AGG	-	Chr3:96276621-96276640	MsG0380017440.01.T01:intron	55.0%
	GTCCTGCAGTTCCAATCTCC+TGG	+	Chr3:96276507-96276526	None:intergenic	55.0%
	GTCTGAGGAGTCAGAGGAGA+AGG	+	Chr3:96276787-96276806	None:intergenic	55.0%
	TGGCATGTCTGAGGAGTCAG+AGG	+	Chr3:96276793-96276812	None:intergenic	55.0%
!	GGCACCACATTTGAAGCAGC+TGG	+	Chr3:96276748-96276767	None:intergenic	55.0%
!!	AGAATGATTTCTGGCGGCGG+CGG	-	Chr3:96276582-96276601	MsG0380017440.01.T01:CDS	55.0%
	ACATCAGGGCCGGTGGTGAA+AGG	+	Chr3:96276663-96276682	None:intergenic	60.0%
	AGTCACCGGATTTCCAGCCG+GGG	+	Chr3:96276878-96276897	None:intergenic	60.0%
	CAGTCACCAGGACGGACATC+AGG	+	Chr3:96276678-96276697	None:intergenic	60.0%
	CAGTCACCGGATTTCCAGCC+GGG	+	Chr3:96276879-96276898	None:intergenic	60.0%
	CCAGTCACCGGATTTCCAGC+CGG	+	Chr3:96276880-96276899	None:intergenic	60.0%
	CCGGTGACTGGATATGCACC+AGG	-	Chr3:96276889-96276908	MsG0380017440.01.T01:intron	60.0%
	CTGATGTCCGTCCTGGTGAC+TGG	-	Chr3:96276676-96276695	MsG0380017440.01.T01:intron	60.0%
	GCTACCGATGCAACGGTCCA+AGG	-	Chr3:96277249-96277268	MsG0380017440.01.T01:CDS	60.0%
	GGGCCGGTGGTGAAAGGAAA+AGG	+	Chr3:96276657-96276676	None:intergenic	60.0%
!	TTTGAAGCAGCTGGAGCGGC+TGG	+	Chr3:96276739-96276758	None:intergenic	60.0%
	ACCAGGACGGACATCAGGGC+CGG	+	Chr3:96276673-96276692	None:intergenic	65.0%
	ACTCGCCCCGGCTGGAAATC+CGG	-	Chr3:96276870-96276889	MsG0380017440.01.T01:intron	65.0%
	CCGGCTGGAAATCCGGTGAC+TGG	-	Chr3:96276877-96276896	MsG0380017440.01.T01:intron	65.0%
!!!	GGCGGCGCCGTTGATTTTGG+TGG	-	Chr3:96276600-96276619	MsG0380017440.01.T01:CDS	65.0%
!!!	GGTTTTGGAGGAGGCAGCGC+CGG	-	Chr3:96276834-96276853	MsG0380017440.01.T01:intron	65.0%
	ACCGGCCCTGATGTCCGTCC+TGG	-	Chr3:96276669-96276688	MsG0380017440.01.T01:intron	70.0%
	AGGACGGACATCAGGGCCGG+TGG	+	Chr3:96276670-96276689	None:intergenic	70.0%
	GGATTTCCAGCCGGGGCGAG+TGG	+	Chr3:96276871-96276890	None:intergenic	70.0%
	TTTCCAGCCGGGGCGAGTGG+AGG	+	Chr3:96276868-96276887	None:intergenic	70.0%
!	TTTGGAGGAGGCAGCGCCGG+TGG	-	Chr3:96276837-96276856	MsG0380017440.01.T01:intron	70.0%
!!	GCGAGTGGAGGCACCACCAC+CGG	+	Chr3:96276856-96276875	None:intergenic	70.0%
!!!	GGCGGCGGCGCCGTTGATTT+TGG	-	Chr3:96276597-96276616	MsG0380017440.01.T01:CDS	70.0%
	GGTGGTGCCTCCACTCGCCC+CGG	-	Chr3:96276858-96276877	MsG0380017440.01.T01:intron	75.0%
!	GTGCCTCCACTCGCCCCGGC+TGG	-	Chr3:96276862-96276881	MsG0380017440.01.T01:intron	80.0%
!!!	GGAGGAGGCAGCGCCGGTGG+TGG	-	Chr3:96276840-96276859	MsG0380017440.01.T01:intron	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	96276495	96277344	96276495	ID=MsG0380017440.01;Name=MsG0380017440.01
Chr3	mRNA	96276495	96277344	96276495	ID=MsG0380017440.01.T01;Parent=MsG0380017440.01;Name=MsG0380017440.01.T01;_AED=0.50;_eAED=0.63;_QI=0\|0\|0\|1\|1\|1\|2\|0\|177
Chr3	exon	96276948	96277344	96276948	ID=MsG0380017440.01.T01:exon:17494;Parent=MsG0380017440.01.T01
Chr3	exon	96276495	96276631	96276495	ID=MsG0380017440.01.T01:exon:17493;Parent=MsG0380017440.01.T01
Chr3	CDS	96276948	96277344	96276948	ID=MsG0380017440.01.T01:cds;Parent=MsG0380017440.01.T01
Chr3	CDS	96276495	96276631	96276495	ID=MsG0380017440.01.T01:cds;Parent=MsG0380017440.01.T01

Gene Sequence

>MsG0380017440.01.T01

ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTTCAAAGAAGAGAATCTTGCCAACGATGTGGGGAGTCAAGAATGATTTCTGGCGGCGGCGGCGCCGTTGATTTTGGTGGCTCCTTTCTTGGTGGAAGAGGCTCTAGCTCCCCTTTTCCTTTCACCACCGGCCCTGATGTCCGTCCTGGTGACTGGTATTGTACTGTTGGAAACTGTGGAGCTCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAATGTGGTGCCCCTAAGGATATTGATACCTTCTCCTCTGACTCCTCAGACATGCCACGATTATTGAGATCACCATACGGTTTTGGAGGAGGCAGCGCCGGTGGTGGTGCCTCCACTCGCCCCGGCTGGAAATCCGGTCTGGGTGTAACGAGCATAACTTCGCCAATAGAATGGAATGCTACCGATGCAACGGTCCAAGGGAATCTAGTACTGGAAGATCTTCCTATTTATCGTGAACTTCTCAATCTGGTAATTCATTCTGATATCATTTAA

Protein sequence

>MsG0380017440.01.T01

MSRPGDWNCRTCNHLNFQRRESCQRCGESRMISGGGGAVDFGGSFLGGRGSSSPFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGGGSAGGGASTRPGWKSGLGVTSITSPIEWNATDATVQGNLVLEDLPIYRELLNLVIHSDII*